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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 325 bits (832), Expect = 2e-87
Identities = 150/191 (78%), Positives = 170/191 (89%)
Frame = +2
Query: 2 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 181
RTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPH
Sbjct: 532 RTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPH 591
Query: 182 YKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
YKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI+P
Sbjct: 592 YKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHP 651
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQY 541
+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQY
Sbjct: 652 ILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQY 711
Query: 542 FDAPIPQANIG 574
FDAP+P A IG
Sbjct: 712 FDAPLPTATIG 722
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 325 bits (832), Expect = 2e-87
Identities = 150/191 (78%), Positives = 170/191 (89%)
Frame = +2
Query: 2 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 181
RTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPH
Sbjct: 1972 RTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPH 2031
Query: 182 YKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
YKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI+P
Sbjct: 2032 YKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHP 2091
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQY 541
+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQY
Sbjct: 2092 ILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQY 2151
Query: 542 FDAPIPQANIG 574
FDAP+P A IG
Sbjct: 2152 FDAPLPTATIG 2162
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 310 bits (794), Expect = 5e-83
Identities = 146/191 (76%), Positives = 167/191 (87%)
Frame = +2
Query: 2 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 181
RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPH
Sbjct: 532 RTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPH 591
Query: 182 YKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
YKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN+KGYLI
Sbjct: 592 YKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITG 651
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQY 541
LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQY
Sbjct: 652 LLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQY 711
Query: 542 FDAPIPQANIG 574
FDAPIPQA++G
Sbjct: 712 FDAPIPQASVG 722
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 310 bits (794), Expect = 5e-83
Identities = 146/191 (76%), Positives = 167/191 (87%)
Frame = +2
Query: 2 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 181
RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPH
Sbjct: 1974 RTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPH 2033
Query: 182 YKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
YKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN+KGYLI
Sbjct: 2034 YKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITG 2093
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQY 541
LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQY
Sbjct: 2094 LLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQY 2153
Query: 542 FDAPIPQANIG 574
FDAPIPQA++G
Sbjct: 2154 FDAPIPQASVG 2164
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 265 bits (676), Expect = 2e-69
Identities = 124/191 (64%), Positives = 149/191 (78%)
Frame = +2
Query: 2 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 181
RTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPH
Sbjct: 531 RTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPH 590
Query: 182 YKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
YKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN GY Y
Sbjct: 591 YKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYK 649
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQY 541
LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL Y
Sbjct: 650 LLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGY 709
Query: 542 FDAPIPQANIG 574
FDAP+P A IG
Sbjct: 710 FDAPLPAATIG 720
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 265 bits (676), Expect = 2e-69
Identities = 124/191 (64%), Positives = 149/191 (78%)
Frame = +2
Query: 2 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 181
RTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPH
Sbjct: 1957 RTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPH 2016
Query: 182 YKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
YKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN GY Y
Sbjct: 2017 YKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYK 2075
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQY 541
LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL Y
Sbjct: 2076 LLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGY 2135
Query: 542 FDAPIPQANIG 574
FDAP+P A IG
Sbjct: 2136 FDAPLPAATIG 2146
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 192 bits (488), Expect = 2e-47
Identities = 99/189 (52%), Positives = 125/189 (66%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 184
TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP Y
Sbjct: 540 TWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFY 599
Query: 185 KPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPL 364
KP + +VST PLK G G VP++ G G+G LPT WV F + + L +A GY I+
Sbjct: 600 KPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGN 659
Query: 365 LREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYF 544
+R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYF
Sbjct: 660 VRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYF 719
Query: 545 DAPIPQANI 571
DA IPQA++
Sbjct: 720 DAAIPQASL 728
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 192 bits (488), Expect = 2e-47
Identities = 99/189 (52%), Positives = 125/189 (66%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 184
TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP Y
Sbjct: 2030 TWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFY 2089
Query: 185 KPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPL 364
KP + +VST PLK G G VP++ G G+G LPT WV F + + L +A GY I+
Sbjct: 2090 KPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGN 2149
Query: 365 LREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYF 544
+R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYF
Sbjct: 2150 VRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYF 2209
Query: 545 DAPIPQANI 571
DA IPQA++
Sbjct: 2210 DAAIPQASL 2218
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 93.2 bits (230), Expect = 1e-17
Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGP 178
TW FH +QQ G + + P + ++ + + K M ++ G + H + + V GP
Sbjct: 1713 TWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGP 1771
Query: 179 HY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKG 346
+ + C++ F+VST PL G H+P++ G G+GR+P+++WV F + +++ +
Sbjct: 1772 KWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQI 1828
Query: 347 YLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTT 526
+IY + AGK IIF APY+A A I+F A + + RD L Y N +++
Sbjct: 1829 RVIY----DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRDMLNRYNNVCTPNSS 1883
Query: 527 GLEQYF 544
G+EQYF
Sbjct: 1884 GIEQYF 1889
[10][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 175
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 508 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 565
Query: 176 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 340
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 566 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 625
Query: 341 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 463
+ +R+ +GK I F PYVAN A I F +
Sbjct: 626 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 659
[11][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 63.5 bits (153), Expect = 1e-08
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 2/182 (1%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 184
TW ++FH Q +G P +++ GV F F+ + H L + G Y
Sbjct: 1971 TWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARY 2030
Query: 185 KPCEEDFIVSTEPLKMGILGEH-VPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+E+ ++S L G + H + +K G G+GRLP+ K+S L ++
Sbjct: 2031 IAKKEEILMSLSSLLPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMR 2082
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQ 538
L ++ LE K ++ PY+ A G + + R L Y N + P+ GL
Sbjct: 2083 LCKQALEEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNGLAG 2141
Query: 539 YF 544
YF
Sbjct: 2142 YF 2143
[12][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 175
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 1895 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 1952
Query: 176 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 340
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 1953 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 2012
Query: 341 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 463
+ +R+ +GK I F PYVAN A I F +
Sbjct: 2013 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 2046
[13][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 59.3 bits (142), Expect = 2e-07
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 5/189 (2%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 184
TW + FH Q +G P +++ G F F+ + + H L + G Y
Sbjct: 510 TWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKY 569
Query: 185 KPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
EE+ ++S L G I + +K G G+GRLP+ K+S L K ++
Sbjct: 570 IAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQ 621
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQ 538
L ++ K ++ PY+ A G + + +D L Y N + P GL
Sbjct: 622 LCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLAT 680
Query: 539 Y---FDAPI 556
Y FD+P+
Sbjct: 681 YFTDFDSPV 689
[14][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 59.3 bits (142), Expect = 2e-07
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 5/189 (2%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 184
TW + FH Q +G P +++ G F F+ + + H L + G Y
Sbjct: 1969 TWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKY 2028
Query: 185 KPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
EE+ ++S L G I + +K G G+GRLP+ K+S L K ++
Sbjct: 2029 IAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQ 2080
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQ 538
L ++ K ++ PY+ A G + + +D L Y N + P GL
Sbjct: 2081 LCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLAT 2139
Query: 539 Y---FDAPI 556
Y FD+P+
Sbjct: 2140 YFTDFDSPV 2148
[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 576
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 577 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 674
[16][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[17][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 2005 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 2062
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 2063 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 2115
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 2116 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 2160
[18][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK ++F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[19][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 58.5 bits (140), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWR 576
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 577 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGASIG-MNAQDLLINY 674
[20][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 58.2 bits (139), Expect = 5e-07
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWR 850
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK ++F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[21][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 56.6 bits (135), Expect = 1e-06
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C +FH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWR 850
Query: 188 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
+ D +VS LK G + P+ YG GVG+ T+ + ++ K +
Sbjct: 851 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH------ 904
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 499
+R+ GK I+F P+V+ AA I+FG+ + +N +D L +Y
Sbjct: 905 -MRDSWNEGKTIVFRCEGPFVSGWAAAISFGTTVG-MNAQDLLRNY 948
[22][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 56.2 bits (134), Expect = 2e-06
Identities = 43/182 (23%), Positives = 72/182 (39%), Gaps = 2/182 (1%)
Frame = +2
Query: 5 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 184
TW ESFH Q++G + P +++ G F F + + H L + G Y
Sbjct: 1970 TWFQAESFHECQKSGESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKY 2029
Query: 185 KPCEEDFIVSTEPLKMGILGE-HVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 361
E + ++S + G + + G G+GRLP+K +++ K L+
Sbjct: 2030 IATENEIVLSLSSVLPGDRNVFKLDLPCGDGIGRLPSKCSILNLRKPG--------LVMR 2081
Query: 362 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQ 538
L + + K ++ PY+ A G + Q+ L Y N + P GL
Sbjct: 2082 LCKRAQDEKKTLVIRDERPYIGAWAVACICGESFG-FGQQSVLALYANLLGPNQRNGLAS 2140
Query: 539 YF 544
YF
Sbjct: 2141 YF 2142
[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 54.7 bits (130), Expect = 5e-06
Identities = 46/180 (25%), Positives = 69/180 (38%)
Frame = +2
Query: 8 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 187
W C ++ TG +PA VLD + K FM + N + + VCGP +
Sbjct: 2021 WNQCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFS 2080
Query: 188 PCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLL 367
+ + L G G + + G +PT +V SF ++ K L
Sbjct: 2081 ASGPSYTLCFNRLAAGETGVQIKPVHAATQGAMPTAKFVESF------RSIKKRPELELA 2134
Query: 368 REQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFD 547
E+G + F APY A I+F SA ++ L Y NC + L YF+
Sbjct: 2135 ISAYESGSNLYFKGCAPYNDIWACAISFCSAFGYAQKQVLLHMYDNCKRLGASSLRSYFN 2194