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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 333 bits (855), Expect = 4e-90
Identities = 154/194 (79%), Positives = 171/194 (88%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDKDAPTIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q
Sbjct: 419 DGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQ 478
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+AS + G VDV+EEL+LNVNVALMELYLHNDP+EF RVR F++ LPL QFRTWAFCE
Sbjct: 479 RASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCE 538
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E D
Sbjct: 539 AFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQEND 598
Query: 542 FIVSTEPLKMGVLG 583
FIVSTEPLKMGV G
Sbjct: 599 FIVSTEPLKMGVCG 612
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 333 bits (855), Expect = 4e-90
Identities = 154/194 (79%), Positives = 171/194 (88%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDKDAPTIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q
Sbjct: 1859 DGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQ 1918
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+AS + G VDV+EEL+LNVNVALMELYLHNDP+EF RVR F++ LPL QFRTWAFCE
Sbjct: 1919 RASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCE 1978
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E D
Sbjct: 1979 AFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQEND 2038
Query: 542 FIVSTEPLKMGVLG 583
FIVSTEPLKMGV G
Sbjct: 2039 FIVSTEPLKMGVCG 2052
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 322 bits (825), Expect = 1e-86
Identities = 152/194 (78%), Positives = 168/194 (86%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDKDAPTIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q
Sbjct: 419 DGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQ 478
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
K S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE
Sbjct: 479 KPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCE 538
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E D
Sbjct: 539 AFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGD 598
Query: 542 FIVSTEPLKMGVLG 583
FIVS +PLK GV G
Sbjct: 599 FIVSNQPLKPGVQG 612
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 322 bits (825), Expect = 1e-86
Identities = 152/194 (78%), Positives = 168/194 (86%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDKDAPTIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q
Sbjct: 1861 DGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQ 1920
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
K S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE
Sbjct: 1921 KPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCE 1980
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E D
Sbjct: 1981 AFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGD 2040
Query: 542 FIVSTEPLKMGVLG 583
FIVS +PLK GV G
Sbjct: 2041 FIVSNQPLKPGVQG 2054
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 282 bits (722), Expect = 1e-74
Identities = 131/192 (68%), Positives = 160/192 (83%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTH 178
DGSDKDAPTIE+KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K KF
Sbjct: 417 DGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQ 476
Query: 179 QKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 358
+KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFC
Sbjct: 477 EKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFC 536
Query: 359 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 538
E+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 537 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 596
Query: 539 DFIVSTEPLKMG 574
DF+VST P+K G
Sbjct: 597 DFLVSTLPIKQG 608
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 282 bits (722), Expect = 1e-74
Identities = 131/192 (68%), Positives = 160/192 (83%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTH 178
DGSDKDAPTIE+KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K KF
Sbjct: 1843 DGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQ 1902
Query: 179 QKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 358
+KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFC
Sbjct: 1903 EKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFC 1962
Query: 359 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 538
E+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 1963 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 2022
Query: 539 DFIVSTEPLKMG 574
DF+VST P+K G
Sbjct: 2023 DFLVSTLPIKQG 2034
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 194 bits (493), Expect = 4e-48
Identities = 101/194 (52%), Positives = 127/194 (65%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K
Sbjct: 427 DGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGG 486
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E
Sbjct: 487 AQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADRE 545
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP YKP +
Sbjct: 546 AFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQ 605
Query: 542 FIVSTEPLKMGVLG 583
+VST PLK G G
Sbjct: 606 LLVSTTPLKQGESG 619
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 194 bits (493), Expect = 4e-48
Identities = 101/194 (52%), Positives = 127/194 (65%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K
Sbjct: 1917 DGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGG 1976
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E
Sbjct: 1977 AQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADRE 2035
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP YKP +
Sbjct: 2036 AFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQ 2095
Query: 542 FIVSTEPLKMGVLG 583
+VST PLK G G
Sbjct: 2096 LLVSTTPLKQGESG 2109
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 109 bits (272), Expect = 2e-22
Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 4/192 (2%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK +PT+ KP LDFLKR F D G + APLD TAI+SSL+W+
Sbjct: 1615 DGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ------ 1668
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
DV+ L N AL+E++ H D EF +RSF+V+++P D TW
Sbjct: 1669 ---------DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQAR 1718
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KP 529
FH +QQ G + + P + ++ + + K M ++ G + H + + V GP + +
Sbjct: 1719 CFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIES 1777
Query: 530 CEEDFIVSTEPL 565
C++ F+VST PL
Sbjct: 1778 CDKQFVVSTLPL 1789
[10][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 103 bits (256), Expect = 1e-20
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DG DK TI ++P EL+FLKR F++ G+I APL+ +I SSL ++
Sbjct: 1870 DGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR---------- 1919
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFC 358
S D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + TW
Sbjct: 1920 -----SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQA 1974
Query: 359 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 538
ESFH Q++G + P +++ G F F + + H L + G Y E
Sbjct: 1975 ESFHECQKSGESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATEN 2034
Query: 539 DFIVSTEPLKMG 574
+ ++S + G
Sbjct: 2035 EIVLSLSSVLPG 2046
[11][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 102 bits (253), Expect = 3e-20
Identities = 66/191 (34%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AIFSSLY++ P
Sbjct: 694 DGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP--------- 744
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ + + L LN VAL ELYLHND ++F VR+F+VT++ W C
Sbjct: 745 -------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCA 797
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
+FH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 798 AFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPD 855
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 856 KYLLVSLTSLK 866
[12][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 100 bits (249), Expect = 8e-20
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 420 DGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--------- 470
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++ W C
Sbjct: 471 -------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCA 523
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
SFH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 524 SFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPD 581
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 582 RYLLVSLTSLK 592
[13][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 100 bits (249), Expect = 8e-20
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 694 DGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--------- 744
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++ W C
Sbjct: 745 -------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCA 797
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
SFH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 798 SFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPD 855
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 856 RYLLVSLTSLK 866
[14][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 100 bits (249), Expect = 8e-20
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 1906 DGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--------- 1956
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++ W C
Sbjct: 1957 -------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCA 2009
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
SFH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 2010 SFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPD 2067
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 2068 RYLLVSLTSLK 2078
[15][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/191 (33%), Positives = 91/191 (47%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 694 DGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--------- 744
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ +++ L LN VAL ELYLH D ++F VR+F+V ++ W C
Sbjct: 745 -------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCA 797
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
SFH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 798 SFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPD 855
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 856 RYLLVSLTSLK 866
[16][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/191 (33%), Positives = 91/191 (47%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 694 DGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--------- 744
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ +++ L LN VAL ELYLH D ++F VR+F+V ++ W C
Sbjct: 745 -------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCA 797
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
SFH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 798 SFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPD 855
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 856 RYLLVSLTSLK 866
[17][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 99.4 bits (246), Expect = 2e-19
Identities = 64/191 (33%), Positives = 91/191 (47%), Gaps = 2/191 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK++P + +KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 420 DGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--------- 470
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
+ +++ L LN VAL ELYLH D ++F VR+F+V ++ W C
Sbjct: 471 -------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCA 523
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED 541
SFH Q + P L+ V KF+ L V GP ++ + D
Sbjct: 524 SFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPD 581
Query: 542 --FIVSTEPLK 568
+VS LK
Sbjct: 582 KYLLVSLTSLK 592
[18][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 99.0 bits (245), Expect = 2e-19
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DG DK TI ++P EL+FLKR K + G+I APL+ +I SSL ++
Sbjct: 1871 DGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR---------- 1920
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFC 358
S D++++LV NVN AL+EL+LH D + F VR+F++ +LP + TW
Sbjct: 1921 -----SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQA 1975
Query: 359 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 538
++FH Q +G P +++ GV F F+ + H L + G Y +E
Sbjct: 1976 QTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKE 2035
Query: 539 DFIVSTEPLKMG 574
+ ++S L G
Sbjct: 2036 EILMSLSSLLPG 2047
[19][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 98.6 bits (244), Expect = 3e-19
Identities = 66/197 (33%), Positives = 93/197 (47%), Gaps = 3/197 (1%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK +P +E+KP +LDFLKR FL D+G + LD T I+SSL +L
Sbjct: 1918 DGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR---------- 1967
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWA 352
S + D I L NV AL ELY D +EF +R+F++ RLP+ + + W
Sbjct: 1968 -----SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWN 2022
Query: 353 FCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPC 532
C ++ TG +PA VLD + K FM + N + + VCGP +
Sbjct: 2023 QCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSAS 2082
Query: 533 EEDFIVSTEPLKMGVLG 583
+ + L G G
Sbjct: 2083 GPSYTLCFNRLAAGETG 2099
[20][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 98.2 bits (243), Expect = 4e-19
Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DG DK TI ++P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 410 DGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---------- 459
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFC 358
S D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW
Sbjct: 460 -----SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEA 514
Query: 359 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 538
+ FH Q +G P +++ G F F+ + + H L + G Y EE
Sbjct: 515 QIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREE 574
Query: 539 DFIVSTEPLKMG 574
+ ++S L G
Sbjct: 575 EILMSLSSLLPG 586
[21][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 98.2 bits (243), Expect = 4e-19
Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DG DK TI ++P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 1869 DGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---------- 1918
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFC 358
S D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW
Sbjct: 1919 -----SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEA 1973
Query: 359 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 538
+ FH Q +G P +++ G F F+ + + H L + G Y EE
Sbjct: 1974 QIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREE 2033
Query: 539 DFIVSTEPLKMG 574
+ ++S L G
Sbjct: 2034 EILMSLSSLLPG 2045
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 89.7 bits (221), Expect = 1e-16
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 5/194 (2%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T H
Sbjct: 411 DGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI-- 468
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
L NV+ AL+ELYLH + F +R F+ R +W
Sbjct: 469 -------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAF 513
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--K 526
+FH Q +G+ P + D VD + + +A F T + + +CGP +
Sbjct: 514 AFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVS 571
Query: 527 PCEEDFIVSTEPLK 568
E F+VST PL+
Sbjct: 572 DPEHQFVVSTTPLR 585
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 89.7 bits (221), Expect = 1e-16
Identities = 64/194 (32%), Positives = 93/194 (47%), Gaps = 5/194 (2%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T H
Sbjct: 1798 DGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI-- 1855
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCE 361
L NV+ AL+ELYLH + F +R F+ R +W
Sbjct: 1856 -------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAF 1900
Query: 362 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--K 526
+FH Q +G+ P + D VD + + +A F T + + +CGP +
Sbjct: 1901 AFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVS 1958
Query: 527 PCEEDFIVSTEPLK 568
E F+VST PL+
Sbjct: 1959 DPEHQFVVSTTPLR 1972
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 61.2 bits (147), Expect = 6e-08
Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 DGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQ 181
DG+DK + T+E KP L+FLKR F + G++ APLD T++++ L++L + F
Sbjct: 1849 DGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTSMYTRLFYLPLALMAFIPGY 1908
Query: 182 KASQYSGEVDVIEELVLNVNVALMELYLH-NDPKEFQRVRSFFVTRLP 322
+ NV L E+ LH N +EF RVR+F+V++ P
Sbjct: 1909 FSKG-------------NVKSFLEEIVLHPNHRREFYRVRNFYVSKAP 1943