[UP]
[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 313 bits (803), Expect = 5e-84
Identities = 146/191 (76%), Positives = 167/191 (87%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E
Sbjct: 538 EAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQEN 597
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI+P+LR Q+
Sbjct: 598 DFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQI 657
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQYFDAP+
Sbjct: 658 EAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLP 717
Query: 542 QANIGQFYFVD 574
A IG FYF +
Sbjct: 718 TATIGTFYFAN 728
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 313 bits (803), Expect = 5e-84
Identities = 146/191 (76%), Positives = 167/191 (87%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E
Sbjct: 1978 EAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQEN 2037
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI+P+LR Q+
Sbjct: 2038 DFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQI 2097
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQYFDAP+
Sbjct: 2098 EAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLP 2157
Query: 542 QANIGQFYFVD 574
A IG FYF +
Sbjct: 2158 TATIGTFYFAN 2168
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 300 bits (767), Expect = 7e-80
Identities = 143/191 (74%), Positives = 164/191 (85%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E
Sbjct: 538 EAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEG 597
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN+KGYLI LLREQ+
Sbjct: 598 DFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQI 657
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQYFDAPI
Sbjct: 658 EAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIP 717
Query: 542 QANIGQFYFVD 574
QA++G FYF D
Sbjct: 718 QASVGTFYFGD 728
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 300 bits (767), Expect = 7e-80
Identities = 143/191 (74%), Positives = 164/191 (85%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E
Sbjct: 1980 EAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEG 2039
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN+KGYLI LLREQ+
Sbjct: 2040 DFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQI 2099
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQYFDAPI
Sbjct: 2100 EAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIP 2159
Query: 542 QANIGQFYFVD 574
QA++G FYF D
Sbjct: 2160 QASVGTFYFGD 2170
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 251 bits (641), Expect = 3e-65
Identities = 119/191 (62%), Positives = 146/191 (76%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 537 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 596
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN GY Y LL EQ+
Sbjct: 597 DFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQI 655
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL YFDAP+
Sbjct: 656 EQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLP 715
Query: 542 QANIGQFYFVD 574
A IG+ YF +
Sbjct: 716 AATIGKSYFAN 726
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 251 bits (641), Expect = 3e-65
Identities = 119/191 (62%), Positives = 146/191 (76%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 1963 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 2022
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN GY Y LL EQ+
Sbjct: 2023 DFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQI 2081
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL YFDAP+
Sbjct: 2082 EQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLP 2141
Query: 542 QANIGQFYFVD 574
A IG+ YF +
Sbjct: 2142 AATIGKSYFAN 2152
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 186 bits (473), Expect = 8e-46
Identities = 98/192 (51%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP YKP +
Sbjct: 545 EAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPD 604
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
+VST PLK G G VP++ G G+G LPT WV F + + L +A GY I+ +R +
Sbjct: 605 QLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHI 664
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYFDA I
Sbjct: 665 ESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIP 724
Query: 542 QANI-GQFYFVD 574
QA++ G FY +
Sbjct: 725 QASLPGTFYLAN 736
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 186 bits (473), Expect = 8e-46
Identities = 98/192 (51%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP YKP +
Sbjct: 2035 EAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPD 2094
Query: 182 DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
+VST PLK G G VP++ G G+G LPT WV F + + L +A GY I+ +R +
Sbjct: 2095 QLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHI 2154
Query: 362 EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYFDA I
Sbjct: 2155 ESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIP 2214
Query: 542 QANI-GQFYFVD 574
QA++ G FY +
Sbjct: 2215 QASLPGTFYLAN 2226
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 89.4 bits (220), Expect = 2e-16
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
Frame = +2
Query: 8 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPC 175
FH +QQ G + + P + ++ + + K M ++ G + H + + V GP + + C
Sbjct: 1720 FHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESC 1778
Query: 176 EEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLL 349
++ F+VST PL G H+P++ G G+GR+P+++WV F + +++ + +IY
Sbjct: 1779 DKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY--- 1832
Query: 350 REQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYF 526
+ AGK IIF APY+A A I+F A + + RD L Y N +++G+EQYF
Sbjct: 1833 -DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRDMLNRYNNVCTPNSSGIEQYF 1889
[10][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 61.6 bits (148), Expect = 4e-08
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Frame = +2
Query: 5 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--K 169
+FH Q +G+ P + D VD + + +A F T + + +CGP +
Sbjct: 514 AFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVS 571
Query: 170 PCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIY 340
E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A+
Sbjct: 572 DPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE----- 626
Query: 341 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 445
+R+ +GK I F PYVAN A I F +
Sbjct: 627 --IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 659
[11][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 61.6 bits (148), Expect = 4e-08
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Frame = +2
Query: 5 SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--K 169
+FH Q +G+ P + D VD + + +A F T + + +CGP +
Sbjct: 1901 AFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVS 1958
Query: 170 PCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIY 340
E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A+
Sbjct: 1959 DPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE----- 2013
Query: 341 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 445
+R+ +GK I F PYVAN A I F +
Sbjct: 2014 --IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 2046
[12][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 59.3 bits (142), Expect = 2e-07
Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
Frame = +2
Query: 2 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
++FH Q +G P +++ GV F F+ + H L + G Y +E
Sbjct: 1976 QTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKE 2035
Query: 182 DFIVSTEPLKMGILGEH-VPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQ 358
+ ++S L G + H + +K G G+GRLP+ K+S L ++ L ++
Sbjct: 2036 EILMSLSSLLPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMRLCKQA 2087
Query: 359 LEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQYF 526
LE K ++ PY+ A G + + R L Y N + P+ GL YF
Sbjct: 2088 LEEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNGLAGYF 2143
[13][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 55.1 bits (131), Expect = 4e-06
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
Frame = +2
Query: 8 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 187
FH Q +G P +++ G F F+ + + H L + G Y EE+
Sbjct: 517 FHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEI 576
Query: 188 IVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLE 364
++S L G I + +K G G+GRLP+ K+S L K ++ L ++
Sbjct: 577 LMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIK 628
Query: 365 AGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQY---FDA 532
K ++ PY+ A G + + +D L Y N + P GL Y FD+
Sbjct: 629 EKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYFTDFDS 687
Query: 533 PI 538
P+
Sbjct: 688 PV 689
[14][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 55.1 bits (131), Expect = 4e-06
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
Frame = +2
Query: 8 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 187
FH Q +G P +++ G F F+ + + H L + G Y EE+
Sbjct: 1976 FHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEI 2035
Query: 188 IVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLE 364
++S L G I + +K G G+GRLP+ K+S L K ++ L ++
Sbjct: 2036 LMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIK 2087
Query: 365 AGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQY---FDA 532
K ++ PY+ A G + + +D L Y N + P GL Y FD+
Sbjct: 2088 EKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYFTDFDS 2146
Query: 533 PI 538
P+
Sbjct: 2147 PV 2148