BB914408 ( RCE13959 )

[UP]


[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=UPI0000163E03
          Length = 824

 Score =  313 bits (803), Expect = 5e-84
 Identities = 146/191 (76%), Positives = 167/191 (87%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E 
Sbjct: 538  EAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQEN 597

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
            DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN  GYLI+P+LR Q+
Sbjct: 598  DFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQI 657

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            EAGKR++FMSPAPYVANNAALIAFG+  K+L Q+DALVHYRN IPEST+GLEQYFDAP+ 
Sbjct: 658  EAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLP 717

Query: 542  QANIGQFYFVD 574
             A IG FYF +
Sbjct: 718  TATIGTFYFAN 728

[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=POL1_BRSV
          Length = 2264

 Score =  313 bits (803), Expect = 5e-84
 Identities = 146/191 (76%), Positives = 167/191 (87%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E 
Sbjct: 1978 EAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQEN 2037

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
            DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN  GYLI+P+LR Q+
Sbjct: 2038 DFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQI 2097

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            EAGKR++FMSPAPYVANNAALIAFG+  K+L Q+DALVHYRN IPEST+GLEQYFDAP+ 
Sbjct: 2098 EAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLP 2157

Query: 542  QANIGQFYFVD 574
             A IG FYF +
Sbjct: 2158 TATIGTFYFAN 2168

[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
          Length = 824

 Score =  300 bits (767), Expect = 7e-80
 Identities = 143/191 (74%), Positives = 164/191 (85%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E 
Sbjct: 538  EAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEG 597

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
            DFIVS +PLK G+ GE+VPI +G G+G LPTK WV  FGK S LKN+KGYLI  LLREQ+
Sbjct: 598  DFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQI 657

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQYFDAPI 
Sbjct: 658  EAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIP 717

Query: 542  QANIGQFYFVD 574
            QA++G FYF D
Sbjct: 718  QASVGTFYFGD 728

[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
            RepID=POL1_TBRVM
          Length = 2266

 Score =  300 bits (767), Expect = 7e-80
 Identities = 143/191 (74%), Positives = 164/191 (85%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E 
Sbjct: 1980 EAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEG 2039

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
            DFIVS +PLK G+ GE+VPI +G G+G LPTK WV  FGK S LKN+KGYLI  LLREQ+
Sbjct: 2040 DFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQI 2099

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQYFDAPI 
Sbjct: 2100 EAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIP 2159

Query: 542  QANIGQFYFVD 574
            QA++G FYF D
Sbjct: 2160 QASVGTFYFGD 2170

[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=UPI00017F0C90
          Length = 826

 Score =  251 bits (641), Expect = 3e-65
 Identities = 119/191 (62%), Positives = 146/191 (76%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FHS+QQTGMLRHDPA +LD ++G +F +FM  S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 537  EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 596

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
            DF+VST P+K G  G H+PIK GGGVG LPT  WV +FG+ S LKN  GY  Y LL EQ+
Sbjct: 597  DFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQI 655

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            E GKR++FMS APYVA NAALI+FGS+ K+L ++  L HYRN IPES  GL  YFDAP+ 
Sbjct: 656  EQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLP 715

Query: 542  QANIGQFYFVD 574
             A IG+ YF +
Sbjct: 716  AATIGKSYFAN 726

[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=POL1_GCMV
          Length = 2252

 Score =  251 bits (641), Expect = 3e-65
 Identities = 119/191 (62%), Positives = 146/191 (76%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FHS+QQTGMLRHDPA +LD ++G +F +FM  S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 1963 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 2022

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
            DF+VST P+K G  G H+PIK GGGVG LPT  WV +FG+ S LKN  GY  Y LL EQ+
Sbjct: 2023 DFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQI 2081

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            E GKR++FMS APYVA NAALI+FGS+ K+L ++  L HYRN IPES  GL  YFDAP+ 
Sbjct: 2082 EQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLP 2141

Query: 542  QANIGQFYFVD 574
             A IG+ YF +
Sbjct: 2142 AATIGKSYFAN 2152

[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=UPI00003FE52F
          Length = 846

 Score =  186 bits (473), Expect = 8e-46
 Identities = 98/192 (51%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FH S+QTGM  + PA  +D   G +F +FMH S+ GN+ HF    L V GP YKP  +
Sbjct: 545  EAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPD 604

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
              +VST PLK G  G  VP++ G G+G LPT  WV  F + + L +A GY I+  +R  +
Sbjct: 605  QLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHI 664

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            E+GK ++F S APYVA NAAL+AFG A KLL  + AL  YRN IPEST GLEQYFDA I 
Sbjct: 665  ESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIP 724

Query: 542  QANI-GQFYFVD 574
            QA++ G FY  +
Sbjct: 725  QASLPGTFYLAN 736

[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=POL1_CNSV
          Length = 2336

 Score =  186 bits (473), Expect = 8e-46
 Identities = 98/192 (51%), Positives = 125/192 (65%), Gaps = 1/192 (0%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            E+FH S+QTGM  + PA  +D   G +F +FMH S+ GN+ HF    L V GP YKP  +
Sbjct: 2035 EAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPD 2094

Query: 182  DFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQL 361
              +VST PLK G  G  VP++ G G+G LPT  WV  F + + L +A GY I+  +R  +
Sbjct: 2095 QLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHI 2154

Query: 362  EAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYFDAPIX 541
            E+GK ++F S APYVA NAAL+AFG A KLL  + AL  YRN IPEST GLEQYFDA I 
Sbjct: 2155 ESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIP 2214

Query: 542  QANI-GQFYFVD 574
            QA++ G FY  +
Sbjct: 2215 QASLPGTFYLAN 2226

[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
            RepID=A2ID54_9SECO
          Length = 1916

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
 Frame = +2

Query: 8    FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPC 175
            FH +QQ G + + P + ++ +  +   K M ++  G + H  +    + V GP +  + C
Sbjct: 1720 FHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESC 1778

Query: 176  EEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLL 349
            ++ F+VST PL       G H+P++ G G+GR+P+++WV  F +   +++ +  +IY   
Sbjct: 1779 DKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY--- 1832

Query: 350  REQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCIPESTTGLEQYF 526
             +   AGK IIF   APY+A   A I+F  A +  + RD L  Y N    +++G+EQYF
Sbjct: 1833 -DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRDMLNRYNNVCTPNSSGIEQYF 1889

[10][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
           RepID=UPI0000163DCE
          Length = 707

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
 Frame = +2

Query: 5   SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--K 169
           +FH  Q +G+    P  + D    VD  +   +     +A F T +   + +CGP +   
Sbjct: 514 AFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVS 571

Query: 170 PCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIY 340
             E  F+VST PL+    G   H  I+Y   GVGRLP+++WV  F  S+    A+     
Sbjct: 572 DPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE----- 626

Query: 341 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 445
             +R+   +GK I F    PYVAN  A I F   +
Sbjct: 627 --IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 659

[11][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
            RepID=POL1_BRAV
          Length = 2094

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
 Frame = +2

Query: 5    SFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--K 169
            +FH  Q +G+    P  + D    VD  +   +     +A F T +   + +CGP +   
Sbjct: 1901 AFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVS 1958

Query: 170  PCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIY 340
              E  F+VST PL+    G   H  I+Y   GVGRLP+++WV  F  S+    A+     
Sbjct: 1959 DPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE----- 2013

Query: 341  PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 445
              +R+   +GK I F    PYVAN  A I F   +
Sbjct: 2014 --IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 2046

[12][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
          Length = 2285

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
 Frame = +2

Query: 2    ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 181
            ++FH  Q +G     P  +++   GV F  F+       + H     L + G  Y   +E
Sbjct: 1976 QTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKE 2035

Query: 182  DFIVSTEPLKMGILGEH-VPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQ 358
            + ++S   L  G +  H + +K G G+GRLP+        K+S L      ++  L ++ 
Sbjct: 2036 EILMSLSSLLPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMRLCKQA 2087

Query: 359  LEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQYF 526
            LE  K ++     PY+   A     G +    + R  L  Y N + P+   GL  YF
Sbjct: 2088 LEEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNGLAGYF 2143

[13][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
            RepID=UPI00003FE537
          Length = 825

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
 Frame = +2

Query: 8    FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 187
            FH  Q +G     P  +++   G  F  F+  +    + H     L + G  Y   EE+ 
Sbjct: 517  FHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEI 576

Query: 188  IVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLE 364
            ++S   L  G I    + +K G G+GRLP+        K+S L   K  ++  L    ++
Sbjct: 577  LMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIK 628

Query: 365  AGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQY---FDA 532
              K ++     PY+   A     G +    + +D L  Y N + P    GL  Y   FD+
Sbjct: 629  EKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYFTDFDS 687

Query: 533  PI 538
            P+
Sbjct: 688  PV 689

[14][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
            RepID=POL1_ARMVN
          Length = 2284

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
 Frame = +2

Query: 8    FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 187
            FH  Q +G     P  +++   G  F  F+  +    + H     L + G  Y   EE+ 
Sbjct: 1976 FHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEI 2035

Query: 188  IVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLE 364
            ++S   L  G I    + +K G G+GRLP+        K+S L   K  ++  L    ++
Sbjct: 2036 LMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIK 2087

Query: 365  AGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYRNCI-PESTTGLEQY---FDA 532
              K ++     PY+   A     G +    + +D L  Y N + P    GL  Y   FD+
Sbjct: 2088 EKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYFTDFDS 2146

Query: 533  PI 538
            P+
Sbjct: 2147 PV 2148