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[1][TOP]
>UniRef100_B9RRX0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9RRX0_RICCO
Length = 560
Score = 175 bits (443), Expect = 3e-42
Identities = 85/169 (50%), Positives = 127/169 (75%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
++ ARGI +P ++++AI QI+KARK L +++ KYP+D EIAK TGLSL +I SAS CLR
Sbjct: 391 SRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDDDEIAKYTGLSLAKIESASRCLRV 450
Query: 396 VSSMN------CGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
V S++ +Y ++PD S++SPE+ VM+QH+ +D+H++L+ LDSRERQ+LILRF
Sbjct: 451 VGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHMIQDMHNLLRSLDSRERQVLILRF 510
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GLND++PKSLE IGR + VSK W+ ++EK+ +T+L NE + +Y++
Sbjct: 511 GLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRNEETCRNLRHYIN 559
[2][TOP]
>UniRef100_B9HE05 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HE05_POPTR
Length = 559
Score = 161 bits (407), Expect = 4e-38
Identities = 78/169 (46%), Positives = 128/169 (75%), Gaps = 6/169 (3%)
Frame = -3
Query: 573 KYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTV 394
++ARGI +P++++++IN+I+KARK L ++ +YP+D E+AK TGLSL +I SA CLR V
Sbjct: 391 RHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEVAKFTGLSLAKIESAQKCLRVV 450
Query: 393 SSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
+S++ + +Y +IPDMSI++PE+ VM+QH+R++I+D+L+ LDSRE+Q+++LR+G
Sbjct: 451 ASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREEIYDLLRGLDSREKQVMVLRYG 510
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
D++PKSL IGR+++VSK + +IEKK + KL +E ++ Y+ L
Sbjct: 511 FKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGIRRNLSRYMIL 559
[3][TOP]
>UniRef100_Q710C2 Sigma factor (Fragment) n=1 Tax=Spinacia oleracea
RepID=Q710C2_SPIOL
Length = 548
Score = 157 bits (397), Expect = 6e-37
Identities = 79/170 (46%), Positives = 121/170 (71%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
+++ RGI VP +++ IN+++KARK+L+ + K+P+D E++K TGLSLD+I SA +CLR
Sbjct: 380 SRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGLSLDKIKSADNCLRI 439
Query: 396 VSSMN------CGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
V S++ ++Y PD ++E PEKTVMKQH+R D+H +LQ LD +ER++LI R+
Sbjct: 440 VGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQELDPKERRVLIHRY 499
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL H SL +G+++ VSK WI ++EK+ALTKL E N + + +YL+L
Sbjct: 500 GLEGH-CMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKHYLNL 548
[4][TOP]
>UniRef100_O22058 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22058_ARATH
Length = 571
Score = 157 bits (397), Expect = 6e-37
Identities = 76/170 (44%), Positives = 125/170 (73%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRST-SMKYPEDHEIAKMTGLSLDRIISASHCLR 400
+++ARG+ +P S+ + IN I+KARK L+++ +KY D EIAK+TG S+ +I +A+ CL+
Sbjct: 401 SRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLK 460
Query: 399 TVSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
V S++ V ++ + PD ++ESPE+ VM+Q R+DIHD+L+ L+ RE+Q+++LR
Sbjct: 461 VVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLR 520
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
+GL D++PKSLE IG+++KVSK WI +IE++A+ KL ++ N + YYL+
Sbjct: 521 YGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570
[5][TOP]
>UniRef100_A7P4G3 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P4G3_VITVI
Length = 561
Score = 156 bits (395), Expect = 1e-36
Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A++ARG+ +P+++N+AI QI+KARK L + +YP+D+EIAK TGLSL +I SA +CLR
Sbjct: 392 ARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRV 451
Query: 396 VSS-----MNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
V S +C G + PD SI+SPE+ M+Q RKDIH++L+ LD RERQIL+LR+
Sbjct: 452 VGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRY 511
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
G + + KSLE IGR + VSK WI ++EK AL L +E + +Y+D+
Sbjct: 512 GFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 561
[6][TOP]
>UniRef100_A5BHR4 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BHR4_VITVI
Length = 611
Score = 156 bits (395), Expect = 1e-36
Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A++ARG+ +P+++N+AI QI+KARK L + +YP+D+EIAK TGLSL +I SA +CLR
Sbjct: 442 ARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRV 501
Query: 396 VSS-----MNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
V S +C G + PD SI+SPE+ M+Q RKDIH++L+ LD RERQIL+LR+
Sbjct: 502 VGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRY 561
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
G + + KSLE IGR + VSK WI ++EK AL L +E + +Y+D+
Sbjct: 562 GFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV 611
[7][TOP]
>UniRef100_Q8L7P7 Sigma factor SigC n=1 Tax=Arabidopsis thaliana RepID=Q8L7P7_ARATH
Length = 291
Score = 155 bits (393), Expect = 2e-36
Identities = 76/170 (44%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRST-SMKYPEDHEIAKMTGLSLDRIISASHCLR 400
+++ARG+ +P S+ + IN I+KARK L+++ +KY D EIAK+TG S+ +I +A+ CL+
Sbjct: 121 SRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLK 180
Query: 399 TVSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
V S++ V ++ + PD ++ESPE+ VM+Q R+DIHD+L+ L+ RE+Q+++LR
Sbjct: 181 VVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLR 240
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
+GL D++PKSLE IG++ KVSK WI +IE++A+ KL ++ N + YYL+
Sbjct: 241 YGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 290
[8][TOP]
>UniRef100_O24621 Sigma factor 3 n=1 Tax=Arabidopsis thaliana RepID=O24621_ARATH
Length = 571
Score = 155 bits (393), Expect = 2e-36
Identities = 76/170 (44%), Positives = 124/170 (72%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRST-SMKYPEDHEIAKMTGLSLDRIISASHCLR 400
+++ARG+ +P S+ + IN I+KARK L+++ +KY D EIAK+TG S+ +I +A+ CL+
Sbjct: 401 SRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKIRAANQCLK 460
Query: 399 TVSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
V S++ V ++ + PD ++ESPE+ VM+Q R+DIHD+L+ L+ RE+Q+++LR
Sbjct: 461 VVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLR 520
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
+GL D++PKSLE IG++ KVSK WI +IE++A+ KL ++ N + YYL+
Sbjct: 521 YGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYLN 570
[9][TOP]
>UniRef100_Q9MTH2 Sigma factor 3 n=1 Tax=Sinapis alba RepID=Q9MTH2_SINAL
Length = 567
Score = 144 bits (364), Expect = 4e-33
Identities = 72/170 (42%), Positives = 120/170 (70%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLR-STSMKYPEDHEIAKMTGLSLDRIISASHCLR 400
+++ARG+ +P S+ + ++QI+KARK L+ S +KYP D EI+K+TG SL +I +A+ CL+
Sbjct: 397 SRHARGVHIPASIIRTMSQIQKARKTLKTSQGIKYPADEEISKLTGYSLKKIRAANQCLK 456
Query: 399 TVSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
V S++ V + + PD ++ESPE+ VM+Q R ++H++L+ L+ RE+Q+++LR
Sbjct: 457 VVGSIDKKVGDCFTTRFLEFTPDPTMESPEEAVMRQSARGEVHNLLEGLEPREKQVMVLR 516
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
+GL D+ PKSLE IG+I +VSK I +IE++A+ KL ++ + YYL+
Sbjct: 517 YGLQDYSPKSLEEIGKILRVSKEGIRKIERRAMAKLRDQPKADNLRYYLN 566
[10][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 103 bits (256), Expect = 1e-20
Identities = 59/170 (34%), Positives = 102/170 (60%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + I++I KA+++L + + E+A++ GL+++++ S +
Sbjct: 405 ADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSAKA 464
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
SM + G + D ++SPE ++KQ +R+DI VL+ L+ RER++L LRF
Sbjct: 465 PGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRF 524
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL+D + K+LE IG+I+KV++ I QIE KA+ KL + S + YLD+
Sbjct: 525 GLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSILREYLDV 574
[11][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 99.8 bits (247), Expect = 1e-19
Identities = 60/170 (35%), Positives = 103/170 (60%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + I++I KA+K+L + P D E+A++ G+S++++ +T
Sbjct: 419 ADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMSVEKLKFIVKSAKT 478
Query: 396 VSSMN--CGVEYPGYIPDM----SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
SSM+ G E I +M +ESPE +++Q +++D+ VL L+ RER++L LRF
Sbjct: 479 PSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRLRF 538
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL+D + ++LE IG ++KV++ I QIE KA+ KL + + YLD+
Sbjct: 539 GLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGVLREYLDV 588
[12][TOP]
>UniRef100_Q6L565 Putative RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=Q6L565_ORYSJ
Length = 882
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNC 379
I +P M I ++++AR+ +R + + P D EIA + G+S+ + A C R V S+
Sbjct: 719 IQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYT 778
Query: 378 GV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHK 217
+ ++ PD S+E+P++ + + +R+ + VL L RE +L LR GL D K
Sbjct: 779 EIGVGQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGK 838
Query: 216 PKSLEYIGRIYKVSKAWIWQIEKKALTKLWNE 121
+SLE IG IY VSK WI +IEK A++KL N+
Sbjct: 839 CRSLEQIGSIYHVSKEWIRKIEKSAMSKLRND 870
[13][TOP]
>UniRef100_Q6I5E7 Putative uncharacterized protein OSJNBa0022J22.1 n=1 Tax=Oryza sativa
Japonica Group RepID=Q6I5E7_ORYSJ
Length = 799
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNC 379
I +P M I ++++AR+ +R + + P D EIA + G+S+ + A C R V S+
Sbjct: 636 IQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYT 695
Query: 378 GV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHK 217
+ ++ PD S+E+P++ + + +R+ + VL L RE +L LR GL D K
Sbjct: 696 EIGVGQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGK 755
Query: 216 PKSLEYIGRIYKVSKAWIWQIEKKALTKLWNE 121
+SLE IG IY VSK WI +IEK A++KL N+
Sbjct: 756 CRSLEQIGSIYHVSKEWIRKIEKSAMSKLRND 787
[14][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 97.8 bits (242), Expect = 5e-19
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS------ASHC 406
+R I +P+ M +A ++K+ARK L S + ++P+D E+A+ GLS+ R+ + A
Sbjct: 403 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRS 462
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L MN ++ I D E+ E+ +MKQ +++D+ VL L+ RE Q++ RFGL
Sbjct: 463 LDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLE 522
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG I VS+ I QIE A KL N+ ++ YL
Sbjct: 523 DGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYL 567
[15][TOP]
>UniRef100_B9FLV6 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9FLV6_ORYSJ
Length = 1012
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNC 379
I +P M I ++++AR+ +R + + P D EIA + G+S+ + A C R V S+
Sbjct: 849 IQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYT 908
Query: 378 GV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHK 217
+ ++ PD S+E+P++ + + +R+ + VL L RE +L LR GL D K
Sbjct: 909 EIGVGQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGK 968
Query: 216 PKSLEYIGRIYKVSKAWIWQIEKKALTKLWNE 121
+SLE IG IY VSK WI +IEK A++KL N+
Sbjct: 969 CRSLEQIGSIYHVSKEWIRKIEKSAMSKLRND 1000
[16][TOP]
>UniRef100_B8AX92 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AX92_ORYSI
Length = 557
Score = 97.8 bits (242), Expect = 5e-19
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 6/152 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNC 379
I +P M I ++++AR+ +R + + P D EIA + G+S+ + A C R V S+
Sbjct: 394 IQLPARMEGIIRKVREARRAIRYNTGRNPPDAEIAALIGVSVANVRLARKCSRRVVSLYT 453
Query: 378 GV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHK 217
+ ++ PD S+E+P++ + + +R+ + VL L RE +L LR GL D K
Sbjct: 454 EIGVGQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVLKLRHGLEDGK 513
Query: 216 PKSLEYIGRIYKVSKAWIWQIEKKALTKLWNE 121
+SLE IG IY VSK WI +IEK A++KL N+
Sbjct: 514 CRSLEQIGSIYHVSKEWIRKIEKSAMSKLRND 545
[17][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 95.1 bits (235), Expect = 3e-18
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS------ASHC 406
+R I +P+ M +A ++K+ARK L S + K P + E+A+ TGLS+ R+ + A
Sbjct: 409 SRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRS 468
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L N ++ I D E+ E + KQ +R+D+ VL L SRE+Q++ RFGL
Sbjct: 469 LDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLE 528
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
D + K+L+ IG + VS+ I QIE A KL N+ + Y+ L
Sbjct: 529 DGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYMFL 575
[18][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 93.6 bits (231), Expect = 1e-17
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA------SHC 406
+R I +P+ M +A ++K+ARK L S + K+P++ EIA+ TGLS+ R+++
Sbjct: 404 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 463
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L MN ++ I D +PE ++K+ +R+D+ VL L +RE+Q++ RFG+
Sbjct: 464 LDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 523
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ + QIE A KL N+ + + YL
Sbjct: 524 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568
[19][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 92.8 bits (229), Expect = 2e-17
Identities = 56/165 (33%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA------SHC 406
+R I +P+ M +A ++K+ARK L S + K P++ E+A+ TGLS+ R+++
Sbjct: 404 SRMIRLPFHMVEATYRVKEARKQLYSETGKQPKNEEVAEATGLSMKRLMAVLLSPKPPRS 463
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L +N ++ I D E+ E +MKQ +R+D+ VL L +RE+Q++ RFG+
Sbjct: 464 LDQKIGINLNLKPSEVIADPEAETSEDILMKQFMRQDLDKVLDSLSTREKQVIRWRFGME 523
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG VS+ + QI+ A KL N+ S + YL
Sbjct: 524 DGRMKTLQEIGETMGVSRERVRQIDTSAFRKLKNKKRNSHLQQYL 568
[20][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 92.8 bits (229), Expect = 2e-17
Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS------ASHC 406
+R I +P+ M A ++K+ARK S + ++P+D E+A+ TGLS+ R+ + A
Sbjct: 398 SRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEVAEATGLSMKRLSAVLLTPKAPRS 457
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L N ++ D E+ E +MK+ ++KD+ VL+ L RE Q++ RFG+
Sbjct: 458 LDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLERVLESLSPRENQVIRWRFGME 517
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ I QIE A KL N+ ++ YL
Sbjct: 518 DGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNRTKQLRQYL 562
[21][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 92.4 bits (228), Expect = 2e-17
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS------ASHC 406
+R I +P+ M +A ++K+ARK L S + ++P + E+A+ TGLS+ R+ + A
Sbjct: 412 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRS 471
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L +N ++ I D E+ E+ ++KQ +R+D+ VL L+ RE+Q++ R+GL
Sbjct: 472 LDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLE 531
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ I QIE A KL N+ + YL
Sbjct: 532 DGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 576
[22][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 92.4 bits (228), Expect = 2e-17
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS------ASHC 406
+R I +P+ M +A ++K+ARK L S + ++P + E+A+ TGLS+ R+ + A
Sbjct: 69 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRS 128
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L +N ++ I D E+ E+ ++KQ +R+D+ VL L+ RE+Q++ R+GL
Sbjct: 129 LDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLE 188
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ I QIE A KL N+ + YL
Sbjct: 189 DGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYL 233
[23][TOP]
>UniRef100_B1C762 RNA polymerase sigma factor n=1 Tax=Anaerofustis stercorihominis
DSM 17244 RepID=B1C762_9FIRM
Length = 403
Score = 91.3 bits (225), Expect = 5e-17
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++K+ +++L + P HEIAK GL +++ +
Sbjct: 236 ADQARTIRIPVHMVETINKLKRVQRMLIQDLGRDPNSHEIAKEMGLPEEKVRDIMKISQD 295
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +PE+ +R + +VL+ L RE ++LILRF
Sbjct: 296 PVSLETPIGEEEDSHLGDFIPDDDAVAPEEAASYMLLRTQLFEVLKTLTDREAKVLILRF 355
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D +P++LE +G I+ V++ I QIE KAL KL + T K+ +L
Sbjct: 356 GLEDGRPRTLEEVGDIFCVTRERIRQIEAKALRKLRHPTRSKKLRDFL 403
[24][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 90.5 bits (223), Expect = 8e-17
Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA------SHC 406
+R I +P+ M +A ++K+ARK L S + K+P++ EIA+ TGLS+ R+++
Sbjct: 406 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 465
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L MN ++ I D + E ++K+ +R+D+ VL L +RE+Q++ RFG+
Sbjct: 466 LDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 525
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ + QIE A KL N+ + + YL
Sbjct: 526 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 570
[25][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 90.5 bits (223), Expect = 8e-17
Identities = 55/165 (33%), Positives = 94/165 (56%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA------SHC 406
+R I +P+ M +A ++K+ARK L S + K+P++ EIA+ TGLS+ R+++
Sbjct: 404 SRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPPRS 463
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L MN ++ I D + E ++K+ +R+D+ VL L +RE+Q++ RFG+
Sbjct: 464 LDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGME 523
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ + QIE A KL N+ + + YL
Sbjct: 524 DGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYL 568
[26][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 90.1 bits (222), Expect = 1e-16
Identities = 53/155 (34%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + I++I KA+ + + P D E+A M G+S+++++ R
Sbjct: 412 ADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMVGMSVEKLLFIVKSARP 471
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+SM+ + G + D + SPE +M Q +++DI DVL+ L+ ER++L LRF
Sbjct: 472 PTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQVLKQDIEDVLRSLNPMEREVLRLRF 531
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
GL+ + +L+ +G I+KV++ I QIE KAL KL
Sbjct: 532 GLSGAQSMTLKDLGIIFKVTRERIRQIEAKALRKL 566
[27][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 89.4 bits (220), Expect = 2e-16
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + +K L + P EIA+ L ++R+ S +
Sbjct: 516 ADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEEIHLPVERVRSVLKMAQQ 575
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V + +I D + E+P + +++ I DVL L RER+++ RF
Sbjct: 576 PISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEKIKDVLDTLTDREREVIEQRF 635
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D P++LE +GR + V++ I QIE KAL KL + T ISK+ +L++
Sbjct: 636 GLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISKIKGFLEM 685
[28][TOP]
>UniRef100_Q9Z7F0 RNA polymerase sigma factor rpoD n=1 Tax=Chlamydophila pneumoniae
RepID=RPOD_CHLPN
Length = 572
Score = 89.4 bits (220), Expect = 2e-16
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+A+ GL+ DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D ++ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[29][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS------ASHC 406
+R I +P+ M A ++K+ARK L S + ++P+D E+A+ GLS+ R+ + A
Sbjct: 401 SRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLLTPKAPRS 460
Query: 405 LRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
L N ++ D E+ E +MK+ ++KD+ VL L RE Q++ RFG+
Sbjct: 461 LDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGME 520
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D + K+L+ IG + VS+ + QIE A KL N+ ++ Y+
Sbjct: 521 DGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNRTKQLRQYM 565
[30][TOP]
>UniRef100_Q821E0 RNA polymerase sigma factor n=1 Tax=Chlamydophila caviae
RepID=Q821E0_CHLCV
Length = 572
Score = 88.6 bits (218), Expect = 3e-16
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+A+ GL+ DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D +ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[31][TOP]
>UniRef100_Q5L4N8 RNA polymerase sigma factor n=1 Tax=Chlamydophila abortus
RepID=Q5L4N8_CHLAB
Length = 571
Score = 88.6 bits (218), Expect = 3e-16
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+A+ GL+ DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D +ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[32][TOP]
>UniRef100_Q256K4 RNA polymerase sigma factor n=1 Tax=Chlamydophila felis Fe/C-56
RepID=Q256K4_CHLFF
Length = 570
Score = 88.6 bits (218), Expect = 3e-16
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+A+ GL+ DR+ A H
Sbjct: 384 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQH 443
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D +ESP + ++ + +VL+ L RER +LI RF
Sbjct: 444 PISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 503
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 504 GLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 553
[33][TOP]
>UniRef100_Q59302 RNA polymerase sigma factor n=1 Tax=Chlamydophila psittaci
RepID=Q59302_CHLPS
Length = 571
Score = 88.6 bits (218), Expect = 3e-16
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+A+ GL+ DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D +ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[34][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 88.6 bits (218), Expect = 3e-16
Identities = 50/167 (29%), Positives = 94/167 (56%), Gaps = 6/167 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
+R I +P + +++ +I+ A ++L + P E+A++ G+S+ R+ + C R +S
Sbjct: 329 SRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTS 388
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
++ V ++ + D + ES E V K+ +KD+ VL L +RE+Q++ LR+GL+
Sbjct: 389 LDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLD 448
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
D + KSL +G + +S+ + QIE KA+ KL + +YLD+
Sbjct: 449 DGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYLDI 495
[35][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 88.6 bits (218), Expect = 3e-16
Identities = 50/167 (29%), Positives = 94/167 (56%), Gaps = 6/167 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
+R I +P + +++ +I+ A ++L + P E+A++ G+S+ R+ + C R +S
Sbjct: 426 SRTIRLPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTS 485
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
++ V ++ + D + ES E V K+ +KD+ VL L +RE+Q++ LR+GL+
Sbjct: 486 LDRCVGKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLD 545
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
D + KSL +G + +S+ + QIE KA+ KL + +YLD+
Sbjct: 546 DGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYLDI 592
[36][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 87.8 bits (216), Expect = 5e-16
Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 251 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 310
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 311 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYG 370
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+ L
Sbjct: 371 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIKL 419
[37][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 87.8 bits (216), Expect = 5e-16
Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 251 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 310
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 311 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYG 370
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+ L
Sbjct: 371 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIKL 419
[38][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 304 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 363
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 364 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 423
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 424 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 470
[39][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 284 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 343
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 344 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 403
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 404 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[40][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 268 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 327
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 328 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 387
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 388 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 434
[41][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 273 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 332
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 333 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 392
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 393 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 439
[42][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 283 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 342
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 343 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 402
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 403 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 449
[43][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 284 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 343
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 344 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 403
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 404 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[44][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 312 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 371
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 372 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 431
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 432 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 478
[45][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 291 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 350
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 351 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 410
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 411 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 457
[46][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 280 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 339
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 340 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 399
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 400 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 446
[47][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 289 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 348
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 349 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 408
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 409 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 455
[48][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 302 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 361
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 362 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 421
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 422 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 468
[49][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 87.0 bits (214), Expect = 9e-16
Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 293 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 352
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 353 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 412
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 413 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 459
[50][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 229 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 288
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 289 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 348
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 349 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 395
[51][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA+ ++++ R I+ S L
Sbjct: 208 ADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQL 267
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L +RER +L LR+G
Sbjct: 268 PISLETPIGKEEDSRLGDFIEADGETPEDQVSKSLLREDLENVLDTLSARERDVLRLRYG 327
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 328 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 374
[52][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 226 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 285
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 286 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 345
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 346 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[53][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 226 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 285
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 286 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 345
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 346 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[54][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 227 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 286
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 287 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 346
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 347 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[55][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 230 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 289
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 290 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 349
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 350 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 396
[56][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 227 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 286
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 287 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 346
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 347 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[57][TOP]
>UniRef100_C4FPK7 RNA polymerase sigma factor n=1 Tax=Veillonella dispar ATCC 17748
RepID=C4FPK7_9FIRM
Length = 387
Score = 86.3 bits (212), Expect = 2e-15
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIA+ G++++R+ +
Sbjct: 220 ADQARTIRIPVHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQE 279
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D +P+ +++ I DV CL RE+Q+LILRF
Sbjct: 280 PVSLETPIGEEEDSHLGDFIEDQDAIAPDDAASYILLQEQIEDVFTCLTDREQQVLILRF 339
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D KP++LE +G+ + V++ I QIE KALTKL N K+ +L
Sbjct: 340 GLKDGKPRTLEEVGQHFNVTRERIRQIEGKALTKLRNRGKRDKIKDFL 387
[58][TOP]
>UniRef100_C0V400 RNA polymerase sigma factor n=1 Tax=Veillonella parvula DSM 2008
RepID=C0V400_9FIRM
Length = 386
Score = 86.3 bits (212), Expect = 2e-15
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIA+ G++++R+ +
Sbjct: 219 ADQARTIRIPVHMVETINKLIRISRQLLQDKGREPLPEEIAEGMGITVERVREIQKIAQE 278
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D +P+ +++ I DV CL RE+Q+LILRF
Sbjct: 279 PVSLETPIGEEEDSHLGDFIEDQDAIAPDDAASYILLQEQIEDVFTCLTDREQQVLILRF 338
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D KP++LE +G+ + V++ I QIE KALTKL N K+ +L
Sbjct: 339 GLKDGKPRTLEEVGQHFNVTRERIRQIEGKALTKLRNRGKRDKIKDFL 386
[59][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 226 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 285
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 286 PISLETPIGKEEDSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYG 345
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 346 IDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[60][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 294 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 353
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 354 PISLETPIGKEEDSRLGDFIESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 413
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I++V++ I QIE KAL KL + + Y+
Sbjct: 414 LDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 460
[61][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
RepID=C5CDI4_KOSOT
Length = 405
Score = 85.9 bits (211), Expect = 2e-15
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLS---LDRIISASHC 406
A AR I VP M + IN++ K + +YP E+ K+TG + ++ I++AS
Sbjct: 229 ADQARTIRVPVHMVETINKVNKVIREHLQEHGEYPTVEELGKLTGKTPEKIEEILAASKE 288
Query: 405 LRTVSSMNCGVEYP---GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
++ S G E ++ D SIE PE+ +K +R+ I +VL L RE +L +R+
Sbjct: 289 TVSLESPISGDEESTMGDFVHDESIEKPEEAAIKMLLREQIDEVLDTLSPREAMVLKMRY 348
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D K K+LE +G+ + V++ I QIE KAL KL + + ++ L +
Sbjct: 349 GLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALLGM 398
[62][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 209 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQL 268
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 269 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 328
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 329 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 375
[63][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 249 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQL 308
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 309 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[64][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 234 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 293
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+P++ V K +R+D+ VL L RER +L LR+G
Sbjct: 294 PISLETPIGKEEDSRLGDFIEADIENPDQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 353
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 354 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRHPNRNGVLKEYI 400
[65][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 277 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 336
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 337 PISLETPIGKEEDSRLGDFIESDTENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 396
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I++V++ I QIE KAL KL + + Y+
Sbjct: 397 LDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 443
[66][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 212 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQL 271
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 272 PISLETPIGKEEDSRLGDFIEADGENPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 331
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 332 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378
[67][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 210 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQL 269
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 270 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 329
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 330 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 376
[68][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 249 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQL 308
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 309 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[69][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 249 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQL 308
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 309 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[70][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA+ ++++ R I+ S L
Sbjct: 258 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQL 317
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 318 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 377
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 378 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424
[71][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 85.9 bits (211), Expect = 2e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 249 ADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQL 308
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 309 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[72][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 85.5 bits (210), Expect = 3e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K L + P + EIA+ ++++ R I+ S L
Sbjct: 336 ADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQL 395
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D IE+PE+ V K +R+D+ VL L RER +L LR+G
Sbjct: 396 PISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYG 455
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 456 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 502
[73][TOP]
>UniRef100_Q6MEU8 RNA polymerase sigma factor n=1 Tax=Candidatus Protochlamydia
amoebophila UWE25 RepID=Q6MEU8_PARUW
Length = 554
Score = 85.1 bits (209), Expect = 4e-15
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + + P E+AK G++ +R+ A H
Sbjct: 381 ADQARTIRIPVHMIETINKVLRGAKKLMMETGREPSPEELAKELGITAERVREIYKIAQH 440
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D +SP + ++ + +VL L RER++LI RF
Sbjct: 441 PISLQAEVGDGGESQFGDFLEDTGADSPAEATGYSILKDKMGEVLSTLSDRERKVLIQRF 500
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 501 GLLDGKPKTLEEVGVEFNVTRERIRQIEAKALRKMRHPIRSKQLKAFLDL 550
[74][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 85.1 bits (209), Expect = 4e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 249 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQL 308
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 309 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[75][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 85.1 bits (209), Expect = 4e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 247 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQL 306
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 307 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 366
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 367 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 413
[76][TOP]
>UniRef100_C4PQ01 RNA polymerase sigma factor n=1 Tax=Chlamydia trachomatis
B/Jali20/OT RepID=C4PQ01_CHLTJ
Length = 571
Score = 85.1 bits (209), Expect = 4e-15
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+ + G + DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D ++ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGDGGESSFGDFLEDTAVESPAEVTGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D +PK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[77][TOP]
>UniRef100_C4PNC5 RNA polymerase sigma factor n=1 Tax=Chlamydia trachomatis
B/TZ1A828/OT RepID=C4PNC5_CHLTZ
Length = 571
Score = 85.1 bits (209), Expect = 4e-15
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+ + G + DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D ++ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D +PK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[78][TOP]
>UniRef100_A5Z979 RNA polymerase sigma factor n=1 Tax=Eubacterium ventriosum ATCC
27560 RepID=A5Z979_9FIRM
Length = 429
Score = 85.1 bits (209), Expect = 4e-15
Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +AR I VP M + IN++ K ++ L P E+A ++ ++++ R
Sbjct: 260 ADHARTIRVPVHMVETINRMSKMQRKLTLELGYEPSTKELATALDMTEEKVLEIMQIARE 319
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ + ++ D + +PE + +R+ I +LQ L RER+++ILRF
Sbjct: 320 PASLETPIGEEDDSNLGDFVADNNTVTPEANIESVMLREHIDVLLQDLKDREREVIILRF 379
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D P++LE +G+I+ V++ I QIE KAL KL N K+ +L+
Sbjct: 380 GLRDGHPRTLEEVGKIFNVTRERIRQIEAKALRKLRNPVRSKKIKDFLN 428
[79][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 85.1 bits (209), Expect = 4e-15
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 249 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQL 308
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ +VL L RER +L LR+G
Sbjct: 309 PISLETPIGKEEDSRLGDFIEADGETPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYG 368
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 369 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[80][TOP]
>UniRef100_P18333 RNA polymerase sigma factor rpoD n=4 Tax=Chlamydia trachomatis
RepID=RPOD_CHLTR
Length = 571
Score = 85.1 bits (209), Expect = 4e-15
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIIS----ASH 409
A AR I +P M + IN++ + K L + K P E+ + G + DR+ A H
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQH 445
Query: 408 CLRTVSSMNCGVE--YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+ + + G E + ++ D ++ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D +PK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[81][TOP]
>UniRef100_B0AAF1 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AAF1_9CLOT
Length = 306
Score = 84.7 bits (208), Expect = 5e-15
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 7/171 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I VP M + IN++ L + P+ EIAK + +++++ +
Sbjct: 135 ADQSRTIRVPVHMVEKINKVSTISSQLAKELGREPKPEEIAKRMHVPVEKVVQVIRISQR 194
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + E IPD SPE+ V + ++ I VL L RE+ ++ LRF
Sbjct: 195 PQSIESTIGQEDDTELEQVIPDKEAHSPEEIVTRSLLKDQIEYVLDTLSEREKGVIKLRF 254
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISK-MNYYLDL 85
GL D + K+LE +GR + V++ QIEKKAL KL + + +K ++YY D+
Sbjct: 255 GLGDGEKKTLEEVGRAFNVTRERARQIEKKALRKLAHPSRSNKLLDYYYDI 305
[82][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 84.3 bits (207), Expect = 6e-15
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 236 ADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPTEEEIATRMEITIEKLRFIAKSAQL 295
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL+ L +RER +L LR+G
Sbjct: 296 PISLETPIGKEEDSRLGDFIESDGETPEDRVAKVLLREDLESVLETLTARERDVLKLRYG 355
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 356 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 402
[83][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 84.3 bits (207), Expect = 6e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 213 ADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADRMEMTIEKLRFIAKSAQL 272
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 273 PISLETPIGKEEDSRLGDFIEADGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYG 332
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 333 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379
[84][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 222 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 281
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 282 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYG 341
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 342 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
[85][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 219 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQL 278
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 279 PISLETPIGKEEDSRLGDFIESDGETPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYG 338
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 339 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 385
[86][TOP]
>UniRef100_Q04T13 RNA polymerase sigma factor n=2 Tax=Leptospira borgpetersenii
serovar Hardjo-bovis RepID=Q04T13_LEPBJ
Length = 585
Score = 84.0 bits (206), Expect = 8e-15
Identities = 50/166 (30%), Positives = 88/166 (53%), Gaps = 6/166 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
AR I VP M + +N++ + ++ + P + EIA+ G + ++ + R S
Sbjct: 419 ARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPIS 478
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
+ V E +IPD +E+P T + + I VL L +RE++++ +RFGL+
Sbjct: 479 LEIPVGSEEDSELGDFIPDTEVETPVNTAASSILAEQIRQVLHTLPAREQKVIRMRFGLD 538
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
D P++LE +G +KV++ I QIE KAL +L + + K+ Y+D
Sbjct: 539 DGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
[87][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 204 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 263
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 264 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKSLLREDLETVLDTLSPRERDVLKLRYG 323
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 324 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 370
[88][TOP]
>UniRef100_A5IMD4 RNA polymerase sigma factor n=2 Tax=Thermotoga RepID=A5IMD4_THEP1
Length = 407
Score = 84.0 bits (206), Expect = 8e-15
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + R+ + P E+AKM G ++I +
Sbjct: 232 ADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKE 291
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ D SI SP+K M+ +R+++ VL+ L RE +L +R+
Sbjct: 292 TISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRY 351
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G+ + V++ I QIE KAL KL + + + L L
Sbjct: 352 GLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 401
[89][TOP]
>UniRef100_C7IAE0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Thermotoga
naphthophila RKU-10 RepID=C7IAE0_9THEM
Length = 407
Score = 84.0 bits (206), Expect = 8e-15
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + R+ + P E+AKM G ++I +
Sbjct: 232 ADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKE 291
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ D SI SP+K M+ +R+++ VL+ L RE +L +R+
Sbjct: 292 TISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRY 351
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G+ + V++ I QIE KAL KL + + + L L
Sbjct: 352 GLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 401
[90][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 220 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 279
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 280 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYG 339
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 340 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386
[91][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 237 ADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQL 296
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 297 PISLETPIGKEEDSRLGDFIESDGETPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYG 356
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 357 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[92][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 224 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 283
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 284 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYG 343
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 344 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
[93][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 224 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 283
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 284 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYG 343
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 344 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390
[94][TOP]
>UniRef100_P77994 RNA polymerase sigma factor rpoD n=1 Tax=Thermotoga maritima
RepID=RPOD_THEMA
Length = 399
Score = 84.0 bits (206), Expect = 8e-15
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + R+ + P E+AKM G ++I +
Sbjct: 224 ADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPPEKIKEILEAAKE 283
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ D SI SP+K M+ +R+++ VL+ L RE +L +R+
Sbjct: 284 TISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTLSPREAMVLRMRY 343
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G+ + V++ I QIE KAL KL + + + L L
Sbjct: 344 GLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 393
[95][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 84.0 bits (206), Expect = 8e-15
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 223 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 282
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 283 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYG 342
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 343 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
[96][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 83.6 bits (205), Expect = 1e-14
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 271 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 330
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 331 PISLETPIGKEEDSRLGDFIESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYG 390
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 391 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 437
[97][TOP]
>UniRef100_B9K8D5 RNA polymerase sigma factor n=1 Tax=Thermotoga neapolitana DSM 4359
RepID=B9K8D5_THENN
Length = 392
Score = 83.6 bits (205), Expect = 1e-14
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + R+ + P E+AKM G ++I +
Sbjct: 217 ADQARTIRIPVHMVETINKLNRLRREYYQKYGEEPSVEELAKMMGKPPEKIKEILEAAKE 276
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ D S+ SP+K M+ +R+++ VL+ L RE +L +R+
Sbjct: 277 TISLESPIGEDEDSSIEDFVADESVPSPKKEAMRMLMREELEKVLKTLSPREAMVLRMRY 336
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D KPK+LE +G+ + V++ I QIE KAL KL + + + L L
Sbjct: 337 GLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 386
[98][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 83.6 bits (205), Expect = 1e-14
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK KVL + P + EIA+ ++++ R I+ S L
Sbjct: 258 ADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQL 317
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 318 PISLETPIGKEEDSRLGDFIESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYG 377
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + + Y+
Sbjct: 378 LDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 424
[99][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 83.6 bits (205), Expect = 1e-14
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK G+S+D++ +
Sbjct: 191 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVRE----IMK 246
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
+S +E P +IPD +P + +++ + DVL L +RE ++L
Sbjct: 247 ISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTAREEKVL 306
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 307 RLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 359
[100][TOP]
>UniRef100_Q8RWR8 Sigma factor protein n=1 Tax=Zea mays RepID=Q8RWR8_MAIZE
Length = 568
Score = 83.6 bits (205), Expect = 1e-14
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Frame = -3
Query: 561 GITV-PWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSM 385
G+T+ P M + ++K+AR+ +R + P D E+A G+S+ + A C R S+
Sbjct: 404 GVTLLPARMESIMRKVKEARRGIRYRQGRNPSDSEVAAAVGVSVANVRLARKCSRRAVSL 463
Query: 384 NC------GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLND 223
V++ IPD S E + + +R+ + VL L +RE ++L LR GL D
Sbjct: 464 YSEVAIGQDVKFAEVIPDESASPDEAALFRGQLRERLLLVLGRLPAREGRVLRLRHGLED 523
Query: 222 HKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISK 106
+ +SLE IG IY VSK WI +IEK A+ +L ++ + +
Sbjct: 524 GRCRSLEEIGGIYGVSKEWIRKIEKSAMARLRDDDAVRR 562
[101][TOP]
>UniRef100_C0PCY3 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0PCY3_MAIZE
Length = 565
Score = 83.6 bits (205), Expect = 1e-14
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Frame = -3
Query: 561 GITV-PWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSM 385
G+T+ P M + ++K+AR+ +R + P D E+A G+S+ + A C R S+
Sbjct: 401 GVTLLPARMESIMRKVKEARRGIRYRQGRNPSDSEVAAAVGVSVANVRLARKCSRRAVSL 460
Query: 384 NC------GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLND 223
V++ IPD S E + + +R+ + VL L +RE ++L LR GL D
Sbjct: 461 YSEVAIGQDVKFAEVIPDESASPDEAALFRGQLRERLLLVLGRLPAREGRVLRLRHGLED 520
Query: 222 HKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISK 106
+ +SLE IG IY VSK WI +IEK A+ +L ++ + +
Sbjct: 521 GRCRSLEEIGGIYGVSKEWIRKIEKSAMARLRDDDAVRR 559
[102][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 83.2 bits (204), Expect = 1e-14
Identities = 58/167 (34%), Positives = 90/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K L + P + EIA ++++ R I+ S L
Sbjct: 237 ADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEEEIATRMEITIEKLRFIAKSAQL 296
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE+ V K +R+D+ VL+ L RER +L LR+G
Sbjct: 297 PISLETPIGKEEDSRLGDFIESEGETPEERVAKVLLREDLESVLETLTPRERDVLKLRYG 356
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+I+ V++ I QIE KAL KL + S + Y+
Sbjct: 357 LDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[103][TOP]
>UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74
RepID=B5GE88_9ACTO
Length = 338
Score = 83.2 bits (204), Expect = 1e-14
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP + + IN++ +AR+ L P D E+A + GL+ +R+ +
Sbjct: 170 ADQARTIRVPVHVVELINRVVRARRTLLQERGHEPCDAEVAAVLGLTPERVGEVLRLAQE 229
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V I D SP ++ +R+ + DVL L RERQ++ LR+
Sbjct: 230 PVSLHTPVGGEDEVALGDLIEDGDAPSPPESAALLLLRRHLEDVLSTLGERERQVVQLRY 289
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D +P++LE IG ++ V++ I QIE K L KL + ++ YLD
Sbjct: 290 GLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSHVFADQLRGYLD 338
[104][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 82.8 bits (203), Expect = 2e-14
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++KK L P EIA+ +S+D++ +
Sbjct: 196 ADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKVREIMRVAQE 255
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD P + + +++ + DVL+ L RE ++L LRF
Sbjct: 256 PVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLKTLTPREEKVLRLRF 315
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +P++LE +G+ + V++ I QIE KAL KL + + K+ +LD
Sbjct: 316 GLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFLD 364
[105][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 82.8 bits (203), Expect = 2e-14
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 232 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 291
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 292 PISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYG 351
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+++ V++ I QIE KAL KL + S + Y+
Sbjct: 352 LDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[106][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 82.8 bits (203), Expect = 2e-14
Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P E+A+ +++DR+I +
Sbjct: 190 ADQARTIRIPVHMVETINKLSRVQRSLLQILGREPTPAEVAEEMDIAVDRVIEIMKVAQE 249
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D ESPE++ +R+ + +L L RE ++L LRF
Sbjct: 250 PVSLETPIGEEDDSHLGDFITDEEAESPEESASFVLLREHLDGILNTLTEREEKVLRLRF 309
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D +P++LE +G+ + V++ I QIE KAL KL + + K+ Y++
Sbjct: 310 GLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYIE 358
[107][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 82.8 bits (203), Expect = 2e-14
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK G+S+D++ +
Sbjct: 191 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVRE----IMK 246
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
+S +E P +IPD +P + +++ + DVL L RE ++L
Sbjct: 247 ISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTPREEKVL 306
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 307 RLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 359
[108][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 82.8 bits (203), Expect = 2e-14
Identities = 50/169 (29%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + +VL + P EIA+ G+++DR+ +
Sbjct: 219 ADQARTIRIPVHMVETINKLIRISRVLVQRLGREPSAEEIAQEMGVTVDRVEEIQKIAQE 278
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + + ++ D + SP++ Q +R+ + ++L+ L RE+++L LRF
Sbjct: 279 PVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQILREQLEEMLEDLTDREKEVLRLRF 338
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +LE +GR + V++ I QIE KAL KL + + ++ +LD
Sbjct: 339 GLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKRLRDFLD 387
[109][TOP]
>UniRef100_P56835 RNA polymerase sigma factor rpoD n=1 Tax=Chlamydia muridarum
RepID=RPOD_CHLMU
Length = 571
Score = 82.8 bits (203), Expect = 2e-14
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + K L + K P E+ + G + DR+ +
Sbjct: 386 ADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQH 445
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V G ++ D ++ESP + ++ + +VL+ L RER +LI RF
Sbjct: 446 PISLQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFVLIHRF 505
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D +PK+LE +G + V++ I QIE KAL K+ + ++ +LDL
Sbjct: 506 GLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLRAFLDL 555
[110][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 82.8 bits (203), Expect = 2e-14
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 232 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 291
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 292 PISLETPIGKEEDSRLGDFIEADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYG 351
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+++ V++ I QIE KAL KL + S + Y+
Sbjct: 352 LDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[111][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 82.4 bits (202), Expect = 2e-14
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 233 ADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQL 292
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 293 PISLETPIGKEEDSRLGDFIEADGETPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYG 352
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+++ V++ I QIE KAL KL + S + Y+
Sbjct: 353 LDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 399
[112][TOP]
>UniRef100_B3DW95 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4
RepID=B3DW95_METI4
Length = 623
Score = 82.4 bits (202), Expect = 2e-14
Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + +K L + P EIA T +S+DRI + +
Sbjct: 450 ADQARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIADETQMSVDRIRTIIKMAQH 509
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V + +I D + E+P + +R+ I DVL L RER ++ RF
Sbjct: 510 PISLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKIKDVLGTLTERERTVIEQRF 569
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D P++LE +G+ ++V++ I QIE KAL K+ + T + + +L++
Sbjct: 570 GLLDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLRHLKGFLEV 619
[113][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 82.4 bits (202), Expect = 2e-14
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA----SHCLRTVS 391
I +P M +A +++K+ R+ LR + P + EIA TG+ L R+ +A + + S
Sbjct: 374 IRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTS 433
Query: 390 SMNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKP 214
+ C + Y PD S E+ E+ + + +++D+ L L RERQ++ RFG++D +
Sbjct: 434 KVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRL 493
Query: 213 KSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++L IGR+ VS+ I QIE A KL + + +YL
Sbjct: 494 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[114][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 82.4 bits (202), Expect = 2e-14
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA----SHCLRTVS 391
I +P M +A +++K+ R+ LR + P + EIA TG+ L R+ +A + + S
Sbjct: 177 IRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTS 236
Query: 390 SMNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKP 214
+ C + Y PD S E+ E+ + + +++D+ L L RERQ++ RFG++D +
Sbjct: 237 KVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRL 296
Query: 213 KSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++L IGR+ VS+ I QIE A KL + + +YL
Sbjct: 297 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 337
[115][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 82.4 bits (202), Expect = 2e-14
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Frame = -3
Query: 552 VPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNCGV 373
+P M +A ++K+ K LR + P + EIA TG+ + R+ +A + + S++ +
Sbjct: 74 LPAHMVEASYRVKECTKRLRRKLRRRPTNEEIALDTGMPIKRVEAAVNLPKYSVSLDSKI 133
Query: 372 -----EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKPKS 208
Y D S E+ E+ + + ++KD+H L L +RE+Q+++LRFGL D + ++
Sbjct: 134 GSTDMTYQEVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQVVVLRFGLEDDRIRT 193
Query: 207 LEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+ IG I VS+ I QIE A KL ++ + + YL
Sbjct: 194 LQEIGNIMGVSRERIRQIESGAFRKLRSKKRVKALKDYL 232
[116][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 82.4 bits (202), Expect = 2e-14
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA----SHCLRTVS 391
I +P M +A +++K+ R+ LR + P + EIA TG+ L R+ +A + + S
Sbjct: 331 IRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTS 390
Query: 390 SMNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKP 214
+ C + Y PD S E+ E+ + + +++D+ L L RERQ++ RFG++D +
Sbjct: 391 KVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRL 450
Query: 213 KSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++L IGR+ VS+ I QIE A KL + + +YL
Sbjct: 451 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 491
[117][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 82.4 bits (202), Expect = 2e-14
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA----SHCLRTVS 391
I +P M +A +++K+ R+ LR + P + EIA TG+ L R+ +A + + S
Sbjct: 374 IRLPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTS 433
Query: 390 SMNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKP 214
+ C + Y PD S E+ E+ + + +++D+ L L RERQ++ RFG++D +
Sbjct: 434 KVGCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRL 493
Query: 213 KSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++L IGR+ VS+ I QIE A KL + + +YL
Sbjct: 494 RTLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[118][TOP]
>UniRef100_UPI000051017F COG0568: DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) n=1 Tax=Brevibacterium linens BL2
RepID=UPI000051017F
Length = 473
Score = 82.0 bits (201), Expect = 3e-14
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +R++ R
Sbjct: 305 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPSPEELAKELDMTPERVVEVQKYGRE 364
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P +V +++ +H VL L RE ++ +RF
Sbjct: 365 PISLHTPLGEDGDSEFGDLIEDSEAVVPSDSVSFTLLQEQLHSVLDTLSEREAGVVSMRF 424
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GLND +PK+L+ IG++Y V++ I QIE K + KL + + + YLD
Sbjct: 425 GLNDGQPKTLDEIGKVYGVTRERIRQIESKTMAKLRHPSRSQVLRDYLD 473
[119][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 251 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQL 310
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 311 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYG 370
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+++ V++ I QIE KAL KL + S + Y+
Sbjct: 371 LDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 417
[120][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 82.0 bits (201), Expect = 3e-14
Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 5/167 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLD--RIISASHCL 403
A +R I +P + + I++IKK K+L + P + EIA ++++ R I+ S L
Sbjct: 211 ADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQL 270
Query: 402 RTVSSMNCGVEYPGYIPDM---SIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
G E + D E+PE V K +R+D+ VL L RER +L LR+G
Sbjct: 271 PISLETPIGKEEDSRLGDFIESDGETPEDQVSKNLLREDLETVLCTLSPRERDVLKLRYG 330
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+D + K+LE IG+++ V++ I QIE KAL KL + S + Y+
Sbjct: 331 LDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 377
[121][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 82.0 bits (201), Expect = 3e-14
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + I ++KK L + P EIA G+++DR+ +
Sbjct: 190 ADQARTIRIPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRVREILRISQD 249
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + + +++ + ++L L RE ++L LRF
Sbjct: 250 PVSLETPIGEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGTLTPREEKVLRLRF 309
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +P++LE +G+ + V++ I QIE KAL KL + + K+ +LD
Sbjct: 310 GLEDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDFLD 358
[122][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 82.0 bits (201), Expect = 3e-14
Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA----SHCLRTVS 391
I +P M +A +++K+ + LR + P + EIA TG+++ R+ +A + + S
Sbjct: 362 IRLPAHMAEASSRVKECCRRLRRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTS 421
Query: 390 SMNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKP 214
+ C V Y +PD S E+ E+ + + ++KD++ L+ L RE+ ++ RFG+ +P
Sbjct: 422 KVGCTDVTYQEIMPDTSAETAEEVLHRWLMKKDVNTALESLSPREKLVMRYRFGIEGGRP 481
Query: 213 KSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++L IG+I VS+ I QIE A KL ++ + + +YL
Sbjct: 482 RTLHDIGQIMGVSRERIRQIELGAFRKLRSKKRVQSLQHYL 522
[123][TOP]
>UniRef100_P61540 RNA polymerase sigma factor rpoD n=2 Tax=Leptospira interrogans
RepID=RPOD_LEPIC
Length = 585
Score = 82.0 bits (201), Expect = 3e-14
Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
AR I VP M + +N++ + ++ + P + EIA+ G + ++ + R S
Sbjct: 419 ARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPIS 478
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
+ V E +IPD +E+P + + I VL L +RE++++ +RFGL+
Sbjct: 479 LEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLD 538
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
D P++LE +G +KV++ I QIE KAL +L + + K+ Y+D
Sbjct: 539 DGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYID 584
[124][TOP]
>UniRef100_Q1G9X1 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842 RepID=Q1G9X1_LACDA
Length = 372
Score = 81.6 bits (200), Expect = 4e-14
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + PE EIA L + ++ A +
Sbjct: 204 ADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAEMDLPVKKVREALKVAQE 263
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D SPE+ + +R + +VL L RE +L LRF
Sbjct: 264 PVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEMLRDQLAEVLDTLTDREENVLRLRF 323
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D P++LE +GR++ V++ I QIE KAL KL + + +K+ +L+
Sbjct: 324 GLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFLE 372
[125][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 81.6 bits (200), Expect = 4e-14
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + + P D E+A+ L+++++ S +R
Sbjct: 232 ADQARTIRIPVHMVETINRMMRTARRLTQENGREPSDEELAQALDLTVEKVRS----IRK 287
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
S +E P ++PD +E+P Q +R+ + VL L RE+++L
Sbjct: 288 TSMEPVSLETPVGQEEDSQLGDFLPDEKLEAPSDAASHQMLREQVAQVLDQLTEREKRVL 347
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL D ++LE +G+ + V++ I QIE KAL KL + K+ YL+
Sbjct: 348 KLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRFGKKLRDYLE 400
[126][TOP]
>UniRef100_B9XH89 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
RepID=B9XH89_9BACT
Length = 614
Score = 81.6 bits (200), Expect = 4e-14
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + I ++ +A+K L + EIA +S++R+ S +
Sbjct: 441 ADQARTIRIPVHMIEIIGKLMRAQKQLLQEFGREATPEEIADEMQISVERVKSILKMAQQ 500
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
SM V + +I D S E+P ++ ++DVL L RER+I+ LRF
Sbjct: 501 PISMQASVGDSDDATFGDFIEDKSAENPSDMTSYSLLKDKLNDVLATLTERERRIVELRF 560
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL D ++LE +G+ YKV++ I QIE KAL KL + T + + +L++
Sbjct: 561 GLVDGYARTLEEVGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFLEM 610
[127][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
17241 RepID=B0PFC0_9FIRM
Length = 361
Score = 81.6 bits (200), Expect = 4e-14
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++KK +L + P EI+ + +D++ +
Sbjct: 193 ADQARTIRIPVHMVETINKVKKVSSLLLHKNGHEPTAEEISAELDMPVDKVREIMRVAQE 252
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P+ +R+ + +VLQ L RE ++L LRF
Sbjct: 253 PVSLETPIGEEEDSHLGDFIPDEDAPAPDTAASHTLLREQLSEVLQTLTPREEKVLRLRF 312
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +GR + V++ I QIE KAL KL + + K+ +LD
Sbjct: 313 GLEDGRSRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFLD 361
[128][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
Length = 487
Score = 81.6 bits (200), Expect = 4e-14
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
+R I +P ++ + ++ +ARK P E+A G+S +++ + RT S
Sbjct: 319 SRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLS 378
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
M + + PD IE+P +V KQ +R + ++L L +ER+I+ LRFG++
Sbjct: 379 MQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGID 438
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
K +SL IG IY +SK + Q+E +AL +L N ++ Y DL
Sbjct: 439 GGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADL 485
[129][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LD95_ARATH
Length = 547
Score = 81.6 bits (200), Expect = 4e-14
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
+R I +P ++ + ++ +ARK P E+A G+S +++ + RT S
Sbjct: 379 SRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLS 438
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
M + + PD IE+P +V KQ +R + ++L L +ER+I+ LRFG++
Sbjct: 439 MQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGID 498
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
K +SL IG IY +SK + Q+E +AL +L N ++ Y DL
Sbjct: 499 GGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAYADL 545
[130][TOP]
>UniRef100_C7RD98 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Anaerococcus prevotii DSM 20548 RepID=C7RD98_ANAPD
Length = 602
Score = 81.3 bits (199), Expect = 5e-14
Identities = 52/159 (32%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P + EIA+ GL ++++ +R
Sbjct: 435 ADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGLEVEKVQE----IRK 490
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
+S +E P +I D S P + +R+ ++DVL CL +RE+++L
Sbjct: 491 ISQEPVSLETPIGEEDDSHLGDFIEDDSAIDPGEAANYTMLREQLNDVLSCLGAREKRVL 550
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
LRFGL D P++LE +G+ + V++ I QIE KAL KL
Sbjct: 551 QLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRKL 589
[131][TOP]
>UniRef100_C2CG99 RNA polymerase sigma factor n=1 Tax=Anaerococcus tetradius ATCC
35098 RepID=C2CG99_9FIRM
Length = 606
Score = 81.3 bits (199), Expect = 5e-14
Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P + EIA+ G+ +D++ +R
Sbjct: 439 ADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGIEVDKVQE----IRK 494
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
+S +E P +I D + P + +R+ ++DVL CL +RE+++L
Sbjct: 495 ISQEPVSLETPIGEEDDSHLGDFIEDDTAVDPGEAANYTMLREQLNDVLSCLGAREKRVL 554
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
LRFGL D P++LE +G+ + V++ I QIE KAL KL
Sbjct: 555 QLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRKL 593
[132][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 81.3 bits (199), Expect = 5e-14
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Frame = -3
Query: 552 VPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNCGV 373
+P M +A ++K+ K LR + P + EIA TG+ + R+ +A + + S++ +
Sbjct: 375 LPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKI 434
Query: 372 -----EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKPKS 208
Y D S E+ E+ + + ++KD+H L L +RE+Q+++LRFGL D + ++
Sbjct: 435 GSTDMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVLRFGLEDGRIRT 494
Query: 207 LEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
L+ IG I VS+ I QIE A KL ++ + + YL
Sbjct: 495 LQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYL 533
[133][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 80.9 bits (198), Expect = 7e-14
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P D EIA + +R+ ++
Sbjct: 801 ADQARTIRIPVHMVETINKMVRISRQLVQKLGREPSDEEIAAEMKIEPERVEE----IKR 856
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
+S M +E P +I D S+ SPE +++ I ++L L RER++L
Sbjct: 857 ISQMPVSLETPIGEEEDSQLGDFIEDRSLPSPEDVAADNLLQEQIEEMLNALSDREREVL 916
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
RFGL D + +LE +GR + V++ I QIE KAL KL + + K+ +LD
Sbjct: 917 RYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLRDFLD 969
[134][TOP]
>UniRef100_C0EUX7 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0EUX7_9FIRM
Length = 422
Score = 80.9 bits (198), Expect = 7e-14
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + +N++ + + L + P EIA+ L ++R++ S +
Sbjct: 253 ADQARTIRIPVHMVETMNRVNRTSRRLLQEYGREPTPEEIAEAMNLPVERVLEISKISQE 312
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D I P +R+ + V+ L RE+++L LRF
Sbjct: 313 PVSLETPIGEEEDSHLGDFIQDEHIPVPADEAAHTLLREQLEKVMDTLSEREQKVLALRF 372
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D KP +LE +GR ++V++ I QIE KAL KL + T K+ +L+
Sbjct: 373 GLEDGKPHTLEEVGREFQVTRERIRQIEAKALRKLRHPTRSRKLRDFLE 421
[135][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
RepID=A0QIP2_MYCA1
Length = 319
Score = 80.5 bits (197), Expect = 9e-14
Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A +G+ +D+I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIDKINDLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE Q++ LRF
Sbjct: 211 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE+ ++KL N ++ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
[136][TOP]
>UniRef100_C5EQF6 RNA polymerase sigma factor n=1 Tax=Clostridiales bacterium
1_7_47FAA RepID=C5EQF6_9FIRM
Length = 381
Score = 80.5 bits (197), Expect = 9e-14
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP M + IN++ K ++ L P E+A+ ++ D+++ R
Sbjct: 214 ADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKVMEIMQIARE 273
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ + ++ D ++ +PE V +R+ I +L L RERQ+++LRF
Sbjct: 274 PASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKERERQVIVLRF 333
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D P++LE +G+ + V++ I QIE KAL KL N ++ +L
Sbjct: 334 GLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
[137][TOP]
>UniRef100_C0CZ55 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZ55_9CLOT
Length = 381
Score = 80.5 bits (197), Expect = 9e-14
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP M + IN++ K ++ L P E+A+ ++ D+++ R
Sbjct: 214 ADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKVMEIMQIARE 273
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ + ++ D ++ +PE V +R+ I +L L RERQ+++LRF
Sbjct: 274 PASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKERERQVIVLRF 333
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D P++LE +G+ + V++ I QIE KAL KL N ++ +L
Sbjct: 334 GLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
[138][TOP]
>UniRef100_C0A975 RNA polymerase sigma factor n=1 Tax=Opitutaceae bacterium TAV2
RepID=C0A975_9BACT
Length = 631
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + +N++ + +K L P E+A L ++R+ +
Sbjct: 401 ADQARTIRIPVHMIETLNKVMQVQKQLLQEFGHEPTPEEVADEMNLPVERVQQIMKMAQQ 460
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V + +I D S E+P +R+ I DVL L RER++L LRF
Sbjct: 461 PISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAYSLLREKIIDVLDSLTERERKVLSLRF 520
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D ++LE +G+ +KV++ I QIE KAL K+ + T I +++ + D
Sbjct: 521 GLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFD 569
[139][TOP]
>UniRef100_A8S2E6 RNA polymerase sigma factor n=1 Tax=Clostridium bolteae ATCC
BAA-613 RepID=A8S2E6_9CLOT
Length = 381
Score = 80.5 bits (197), Expect = 9e-14
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP M + IN++ K ++ L P E+A+ ++ D+++ R
Sbjct: 214 ADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVTELAEALDMTEDKVMEIMQIARE 273
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ + ++ D ++ +PE V +R+ I +L L RERQ+++LRF
Sbjct: 274 PASLETPIGEEDDSNLGDFVADNNVVTPEGNVESVMLREHIDALLGDLKERERQVIVLRF 333
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D P++LE +G+ + V++ I QIE KAL KL N ++ +L
Sbjct: 334 GLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 381
[140][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 80.5 bits (197), Expect = 9e-14
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 573 KYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTV 394
+++R I +P ++ + ++ +A++ P EIA+ G+++D++ RT
Sbjct: 365 QHSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTP 424
Query: 393 SSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
SM V + D IE P+ +V KQ +RK I +L L +ER+I+ LRFG
Sbjct: 425 LSMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFG 484
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
+ D K KSL IG ++ +SK + Q+E +AL KL ++ Y DL
Sbjct: 485 IEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADL 533
[141][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
intracellulare ATCC 13950 RepID=UPI0001B45B52
Length = 319
Score = 80.1 bits (196), Expect = 1e-13
Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A +G+ +D+I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVDKINDLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE Q++ LRF
Sbjct: 211 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE+ ++KL N ++ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
[142][TOP]
>UniRef100_B7ICM7 RNA polymerase sigma factor n=1 Tax=Thermosipho africanus TCF52B
RepID=B7ICM7_THEAB
Length = 371
Score = 80.1 bits (196), Expect = 1e-13
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 7/156 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKA-RKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLR 400
A AR I VP M + IN+++K R+ + + P + E+AK+ G ++++ +
Sbjct: 198 ADQARTIRVPVHMVETINKVQKIMREYYQEHGTEIPIE-ELAKLIGKPVEKVEEILQAAK 256
Query: 399 TVSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
+S+ V +I D +I SP+K M+ IR+++ VL+ L+ RE+ +L +R
Sbjct: 257 ETTSLEAPVGEDDDSTVGDFIADETIASPKKEAMRMLIREEVDKVLETLNDREKLVLKMR 316
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
+GL D K K+LE +G+ + V++ I QIE KAL KL
Sbjct: 317 YGLIDGKAKTLEEVGQYFNVTRERIRQIEVKALRKL 352
[143][TOP]
>UniRef100_B1ZQW8 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZQW8_OPITP
Length = 640
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + +N++ + +K L P E+A L ++R+ +
Sbjct: 406 ADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVADEMNLPVERVQQIMKMAQQ 465
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V + +I D S E+P +R+ I DVL L RER++L LRF
Sbjct: 466 PISLQSPVGDGDDTSFGDFIEDKSAENPYDMTAFSLLREKIIDVLDSLTERERRVLSLRF 525
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D ++LE +G+ +KV++ I QIE KAL K+ + T I +++ + D
Sbjct: 526 GLIDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFD 574
[144][TOP]
>UniRef100_A6LLT9 RNA polymerase sigma factor n=1 Tax=Thermosipho melanesiensis BI429
RepID=A6LLT9_THEM4
Length = 370
Score = 80.1 bits (196), Expect = 1e-13
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKA-RKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLR 400
A AR I VP M + IN+++K R + + P + E+AK+ G ++++ +
Sbjct: 197 ADQARTIRVPVHMVETINKVQKIMRDYYQQHGTEIPIE-ELAKIIGKPVEKVEEILQAAK 255
Query: 399 TVSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
+S+ V ++ D SI SP+K M+ IR+++ VL+ L+ RE+ +L +R
Sbjct: 256 ETTSLEAPVGEDEDSTVGDFVADESIASPKKEAMRMLIREEVEKVLETLNDREKLVLKMR 315
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
+GL D K K+LE +G+ + V++ I QIE KAL KL
Sbjct: 316 YGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKL 351
[145][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 80.1 bits (196), Expect = 1e-13
Identities = 47/167 (28%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A+ +G+ ++I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPAEKIADLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE+Q++ LRF
Sbjct: 211 PVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE++ + KL N ++ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
[146][TOP]
>UniRef100_A8SMX7 RNA polymerase sigma factor n=1 Tax=Parvimonas micra ATCC 33270
RepID=A8SMX7_9FIRM
Length = 382
Score = 80.1 bits (196), Expect = 1e-13
Identities = 49/173 (28%), Positives = 93/173 (53%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P + EI++ G+ +D++ +R
Sbjct: 214 ADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVDKVNE----IRK 269
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
++ +E P +I D + +P++ +++ ++ VL L RE+++L
Sbjct: 270 IAQEPVSLETPIGEEDDSHLGDFIEDETAIAPDEAANFSMLKEQLNQVLSTLSDREKKVL 329
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGLND P++LE +G+ ++V++ I QIE KAL KL + + K+ +L+
Sbjct: 330 ELRFGLNDGTPRTLEEVGKEFEVTRERIRQIEAKALRKLKHPSRSQKLKDFLE 382
[147][TOP]
>UniRef100_B5JG90 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium
DG1235 RepID=B5JG90_9BACT
Length = 576
Score = 79.7 bits (195), Expect = 1e-13
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + +N++ + +K L P E+A+ L ++R+ + +
Sbjct: 385 ADQARTIRIPVHMIETLNKVMQVQKQLLQEYGHEPTPEEVAEEMALPVERVQTIMKMAQQ 444
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V + +I D S E+P +R+ I DVL L RER++L LRF
Sbjct: 445 PISLQSPVGDGDDTNFGDFIEDKSAENPYDQTAFSLLREKIIDVLDSLTERERRVLSLRF 504
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D ++LE +G+ +KV++ I QIE KAL K+ + T I +++ + +
Sbjct: 505 GLVDGYSRTLEEVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFE 553
[148][TOP]
>UniRef100_A8UQQ5 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UQQ5_9AQUI
Length = 571
Score = 79.7 bits (195), Expect = 1e-13
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN+I KA K L + P EIAK G++ D++ +
Sbjct: 403 ADQARTIRIPVHMIETINRIIKASKRLFQELGREPTPEEIAKHLGMTPDKVRKVLRSAQE 462
Query: 396 VSSMNCGVE------YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D S+ +PE+ V ++ +R+ + VL+ L +ER+IL R+
Sbjct: 463 PISLETPIGDDEDTFLKDFIEDKSVPNPEEYVSRKLLREQLERVLETLSDKEREILRYRY 522
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
GL D +LE +G+++ V++ I QIE KA+ KL
Sbjct: 523 GLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKL 557
[149][TOP]
>UniRef100_UPI00017F5605 RNA polymerase sigma factor (sigma-43) n=1 Tax=Clostridium
difficile QCD-23m63 RepID=UPI00017F5605
Length = 388
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK ++ D++ +
Sbjct: 220 ADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMEMTEDKVREIMKIAQD 279
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ I DVL L+ RE+++L LRF
Sbjct: 280 PVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLNDREQKVLKLRF 339
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 340 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYLD 388
[150][TOP]
>UniRef100_Q18BX5 RNA polymerase sigma factor n=1 Tax=Clostridium difficile 630
RepID=Q18BX5_CLOD6
Length = 390
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK ++ D++ +
Sbjct: 222 ADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMEMTEDKVREIMKIAQD 281
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ I DVL L+ RE+++L LRF
Sbjct: 282 PVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLNDREQKVLKLRF 341
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 342 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYLD 390
[151][TOP]
>UniRef100_B2V7P9 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2V7P9_SULSY
Length = 590
Score = 79.3 bits (194), Expect = 2e-13
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIAK G+ D++ +
Sbjct: 420 ADQARTIRIPVHMIETINKLLRISRTLVQELGREPTPEEIAKKAGMPADKVRKILRTSQD 479
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D ++ SPE+ ++KQ +R + +VL L RE Q+L RF
Sbjct: 480 PVSLETPIGSDEESHLGDFIEDKTVLSPEQHMLKQALRLQLDEVLSTLSEREEQVLRYRF 539
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
GL D +LE +G+ + V++ I QIE KAL KL
Sbjct: 540 GLEDDTEHTLEQVGKRFGVTRERIRQIEAKALRKL 574
[152][TOP]
>UniRef100_A5UPS4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UPS4_ROSS1
Length = 402
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P M +AI+Q+K+ L+ T + P EIA G+S ++
Sbjct: 234 ADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTKVRRTLEASMH 293
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V G +I D I +P + +R+ + +VLQ L RER+I+ LR+
Sbjct: 294 PLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPERERKIIQLRY 353
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G + +++ I QIE AL KL + K+ YLD
Sbjct: 354 GLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYLD 402
[153][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 79.3 bits (194), Expect = 2e-13
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A+ +G+ +++I R
Sbjct: 161 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRD 220
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE+Q++ LRF
Sbjct: 221 PVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 280
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE++ + KL N ++ Y
Sbjct: 281 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 327
[154][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 79.3 bits (194), Expect = 2e-13
Identities = 47/167 (28%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A +G+ +++I R
Sbjct: 161 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVEKITDLLEHSRD 220
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE+Q++ LRF
Sbjct: 221 PVSLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 280
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE++ + KL N ++ Y
Sbjct: 281 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 327
[155][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 79.3 bits (194), Expect = 2e-13
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A+ +G+ +++I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE+Q++ LRF
Sbjct: 211 PVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE++ + KL N ++ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
[156][TOP]
>UniRef100_C9XSQ7 RNA polymerase sigma factor (Sigma-43) n=2 Tax=Clostridium
difficile RepID=C9XSQ7_CLODI
Length = 388
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK ++ D++ +
Sbjct: 220 ADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPKPEEIAKEMEMTEDKVREIMKIAQD 279
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ I DVL L+ RE+++L LRF
Sbjct: 280 PVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAYSLLKEQIEDVLGSLNDREQKVLKLRF 339
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 340 GLEDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLRDYLD 388
[157][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 79.3 bits (194), Expect = 2e-13
Identities = 49/158 (31%), Positives = 89/158 (56%), Gaps = 7/158 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKKA ++ + K P D +A++ + ++++ + +
Sbjct: 210 ADQGRTIRIPVHMIETINKIKKASRIHLQETGKEPTDDYLAEIVEMPVEKVKNILEMNQD 269
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQC-LDSRERQILILR 238
S+ V E ++ D +P + ++ +++ ++DVL+ L+ RE Q+L LR
Sbjct: 270 PISLETPVGSEDDSELGDFVEDDKFLNPHEATVRSVLKEKLNDVLRKELNEREEQVLRLR 329
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWN 124
+GL+D PK+LE +G+I+ V++ I QIE KA+ KL N
Sbjct: 330 YGLDDGAPKTLEEVGKIFDVTRERIRQIEVKAINKLKN 367
[158][TOP]
>UniRef100_C1TLL9 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TLL9_9BACT
Length = 381
Score = 79.3 bits (194), Expect = 2e-13
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ +A + L + + P D EIA G+ +++ +
Sbjct: 213 ADQARTIRIPVHMVETINKVMRASRNLVQSLGREPTDEEIAAEMGIEPAKVVQIRKVAQE 272
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E +I D + SP+ + + +R + DVL+ L RE+Q+L LRF
Sbjct: 273 PISLESPVGEEDDSELGDFIEDKDMISPDDSTSMEFLRDQLDDVLEGLTDREKQVLRLRF 332
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
G +D + +LE +GR + V++ I QIE KAL KL + + + Y+
Sbjct: 333 GFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKLRHPSRSVTLRDYM 380
[159][TOP]
>UniRef100_C0FDC5 RNA polymerase sigma factor n=1 Tax=Clostridium sp. M62/1
RepID=C0FDC5_9CLOT
Length = 377
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP M + IN++ K ++ L P E++ +S D+++ R
Sbjct: 210 ADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVAELSAALDMSEDKVMEIMQIARE 269
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ + ++ D ++ +PE V +R+ I +L L RERQ+++LRF
Sbjct: 270 PASLETPIGEEDDSNLGDFVADGNVVTPEGNVESVMLREHIDALLGDLKERERQVIVLRF 329
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D P++LE +G+ + V++ I QIE KAL KL N ++ +L
Sbjct: 330 GLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 377
[160][TOP]
>UniRef100_C0D895 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0D895_9CLOT
Length = 376
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIA +S++R+ +
Sbjct: 207 ADQARTIRIPVHMVENINRLVRTSRQLLQELGREPTTEEIAARAEMSVERVSEILKMSQE 266
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D ++ P+ + + + +VL L RE+++L LRF
Sbjct: 267 PVSLETPIGEEEDSHLGDFIQDDNVTVPQDAATYTLLHEQLMEVLTTLTEREQKVLRLRF 326
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D +P++LE +GR +KV++ I QIE KAL KL + + K+ YLD
Sbjct: 327 GLDDGRPRTLEEVGREFKVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 375
[161][TOP]
>UniRef100_B4WFP5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WFP5_9SYNE
Length = 431
Score = 79.3 bits (194), Expect = 2e-13
Identities = 51/170 (30%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRI------ISA 415
A +R I +P + + +N+IKKA++ + T + + +IAK +++ +I +
Sbjct: 261 ATQSRTIRLPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAKELDMTVAQIREVLLKVPR 320
Query: 414 SHCLRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S L T + E + I SPE +M++ +++++H +L L +RE++++ LRF
Sbjct: 321 SVSLDTKVGKDRDTELGDLLETEDI-SPEDRLMRESLKRELHQLLTDLTTREQEVITLRF 379
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL 85
GL+D P SL IGR ++S+ + QIE KAL KL +++ YL++
Sbjct: 380 GLDDGVPYSLAEIGRTLELSRERVRQIESKALQKLRQPKRRNRVRDYLEV 429
[162][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
acidaminovorans RepID=B0VJJ6_9BACT
Length = 579
Score = 79.3 bits (194), Expect = 2e-13
Identities = 48/170 (28%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M ++IN+I + + L + P EI+++ + +++I + +
Sbjct: 405 ADQARTIRIPVHMIESINKINRTSRRLMQKLGREPYPEEISEVLDIPVEKIKNIMSISKE 464
Query: 396 VSSMNCGVEYPG-------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILR 238
S++ + + +I D +I SPE+ + ++K + +VL+ L RE +++ LR
Sbjct: 465 PVSLDKPIGHDSEDSILGDFIEDRTIISPERLAERSLLKKQVDEVLKTLTPREERVIRLR 524
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
FG++D ++LE +G I++V++ I QIE KAL KL + + + + +LD
Sbjct: 525 FGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLRHPSRAAILQQFLD 574
[163][TOP]
>UniRef100_A6CE36 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797
RepID=A6CE36_9PLAN
Length = 588
Score = 79.3 bits (194), Expect = 2e-13
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 6/172 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +AR I +P M ++I+ +K + +R + + P E+A GL ++ +
Sbjct: 389 ADHARTIRIPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGVEETERIMKTWKH 448
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V + ++ D SP M++ ++ I VL+ L RER+I+ LR+
Sbjct: 449 PISLDTPVGESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHVLKSLTYREREIIRLRY 508
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLDL*F 79
GL D +LE GRI+KV++ I QIE KAL KL ++T + + ++D F
Sbjct: 509 GLGDGYSYTLEETGRIFKVTRERIRQIESKALRKLQHQTRSAHLRGFVDAIF 560
[164][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 79.3 bits (194), Expect = 2e-13
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
+R I +P ++ I+ I+K K L+ + P + EI + G+ + C R + S
Sbjct: 424 SRSIRLPVHVHDTISLIRKQTKALQVELGRPPSEEEICESVGIDRAKYRLVMECSRNIVS 483
Query: 387 MNC------GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
+ V + G E E+ + +R+ I VL CL +RER+++ +RFGL
Sbjct: 484 LETPLRSGDDVHFLGESLIAPEERAEENCSRDTLRESIEKVLHCLSTREREVIRMRFGLT 543
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
D +P++LE +G + V++ I QIE KAL KL + ++ YL
Sbjct: 544 DGRPRTLEEVGSRFNVTRERIRQIESKALKKLRTPAENNFLDEYL 588
[165][TOP]
>UniRef100_UPI0001742EF6 RNA polymerase sigma factor RpoD n=1 Tax=candidate division TM7
single-cell isolate TM7a RepID=UPI0001742EF6
Length = 323
Score = 79.0 bits (193), Expect = 3e-13
Identities = 48/172 (27%), Positives = 89/172 (51%), Gaps = 9/172 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E++K + D+I +
Sbjct: 152 ADQARVIRIPVHMVETINKLLRTQRRMTQELNREPTIEELSKELDMEPDKIEYVMKIKQD 211
Query: 396 VSSMNCGVEYPG---------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILI 244
+ S++ GV G +I D +PE++ Q +++ + +L L RE++I+
Sbjct: 212 IHSLDAGVGRDGDEEDSVLGDFIEDEDTATPEESASSQLLKEQVQGILSSLSDREQKIIK 271
Query: 243 LRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
+RFGL + K +LE +G+ + V++ I QIE KAL KL + K++ YL+
Sbjct: 272 MRFGLENGKSHTLEEVGQEFAVTRERIRQIEAKALAKLRKHKDAKKLHEYLN 323
[166][TOP]
>UniRef100_Q04A25 RNA polymerase sigma factor n=1 Tax=Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365 RepID=Q04A25_LACDB
Length = 372
Score = 79.0 bits (193), Expect = 3e-13
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + PE EIA L + ++ A +
Sbjct: 204 ADQARTIRIPVHMVETINKLIRIQRQFLQDLGRDPEPEEIAAEMDLPVKKVREALKVAQE 263
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D SPE+ + ++ + +VL L RE +L LRF
Sbjct: 264 PVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAEVLDTLTDREENVLRLRF 323
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D P++LE +GR++ V++ I QIE KAL KL + + +K+ +L+
Sbjct: 324 GLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNKLRDFLE 372
[167][TOP]
>UniRef100_B0S1K1 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 29328
RepID=B0S1K1_FINM2
Length = 388
Score = 79.0 bits (193), Expect = 3e-13
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P + EIAK G+ ++++ +R
Sbjct: 220 ADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKVRE----VRK 275
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
++ +E P +I D + +P++ +R+++ +L L+ RER++L
Sbjct: 276 IAQEPVSLETPIGEEEDSHLGDFIEDDTAIAPDEAANFTMLREELEGILNTLNERERKVL 335
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL D P++LE +G+ + V++ I QIE KAL KL + + K+ +L+
Sbjct: 336 ALRFGLVDGTPRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLKDFLE 388
[168][TOP]
>UniRef100_A7GXY2 RNA polymerase sigma factor n=1 Tax=Campylobacter curvus 525.92
RepID=A7GXY2_CAMC5
Length = 614
Score = 79.0 bits (193), Expect = 3e-13
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN+I K + K P+ IAK GLS+D++ +
Sbjct: 444 ADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVDKVKQVIKITKE 503
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ ++ D S SP + ++K +R+ I DVL L+ RE+ ++ +RF
Sbjct: 504 PISLEAPIANEEDGKFGDFVEDKSSLSPIEQILKGDLREQIDDVLSQLNDREKAVICMRF 563
Query: 234 G-LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
G L D ++LE IG+ V++ + QIE A+ KL + K+ Y++
Sbjct: 564 GLLEDESDRTLEEIGKALNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE 613
[169][TOP]
>UniRef100_C7HUH1 RNA polymerase sigma factor RpoD n=1 Tax=Anaerococcus vaginalis
ATCC 51170 RepID=C7HUH1_9FIRM
Length = 614
Score = 79.0 bits (193), Expect = 3e-13
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P + EIA+ G+ ++++ +R
Sbjct: 447 ADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGIEVEKVQE----IRK 502
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
++ +E P +I D + +P+ +R ++DVL CL +RE+++L
Sbjct: 503 IAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAANYSMLRDQLNDVLSCLGAREKRVL 562
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
LRFGL D P++LE +G+ + V++ I QIE KAL KL
Sbjct: 563 QLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRKL 601
[170][TOP]
>UniRef100_C2KW80 RNA polymerase sigma factor n=1 Tax=Oribacterium sinus F0268
RepID=C2KW80_9FIRM
Length = 385
Score = 79.0 bits (193), Expect = 3e-13
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP M + IN++ K ++ L P E+A+ ++ +++ R
Sbjct: 217 ADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSVKELAEHLDMTEEKVQEIMQIARE 276
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ + ++ D ++ SPE V +R+ I +L L RERQ+++LRF
Sbjct: 277 PASLETPIGEEDDSNLGDFVADTNVLSPEGNVESVMLREHIDTLLGDLKERERQVIVLRF 336
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL D P++LE +G+ + V++ I QIE KAL KL N ++ +L
Sbjct: 337 GLEDGHPRTLEEVGKEFNVTRERIRQIEAKALRKLRNPVRSKRIRDFL 384
[171][TOP]
>UniRef100_C2HGK9 RNA polymerase sigma factor n=1 Tax=Finegoldia magna ATCC 53516
RepID=C2HGK9_PEPMA
Length = 389
Score = 79.0 bits (193), Expect = 3e-13
Identities = 50/173 (28%), Positives = 92/173 (53%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P + EIAK G+ ++++ +R
Sbjct: 221 ADQARTIRIPVHMVETINRLVRIERQLLQDLGRDPTNEEIAKEMGIEVEKVRE----VRK 276
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
++ +E P +I D + +P++ +R+++ +L L+ RER++L
Sbjct: 277 IAQEPVSLETPIGEEEDSHLGDFIEDDTAIAPDEAANFTMLREELEGILNTLNERERKVL 336
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL D P++LE +G+ + V++ I QIE KAL KL + + K+ +L+
Sbjct: 337 ALRFGLVDGTPRTLEEVGKDFDVTRERIRQIEAKALRKLKHPSRSQKLKDFLE 389
[172][TOP]
>UniRef100_C0CZA7 RNA polymerase sigma factor n=1 Tax=Clostridium asparagiforme DSM
15981 RepID=C0CZA7_9CLOT
Length = 405
Score = 79.0 bits (193), Expect = 3e-13
Identities = 53/168 (31%), Positives = 90/168 (53%), Gaps = 6/168 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLS---LDRIISASH- 409
A AR I +P M +A+N+I++ ++ L + P + E+A+ G++ ++ +I S
Sbjct: 237 ADQARTIRLPVHMVEAVNKIRRTQRDLSVQLGRDPSNRELAEAVGMTEKRVEELIQTSGD 296
Query: 408 --CLRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
L T G ++ D + +S E +R++I +LQ L+ RERQ++ LRF
Sbjct: 297 TVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENVLLREEIDSMLQGLNERERQVIKLRF 356
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
GL + +P +LE +GR + V++ I QIE AL KL N K+ +L
Sbjct: 357 GLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLRNPVRSKKVRDFL 404
[173][TOP]
>UniRef100_B6WAP8 RNA polymerase sigma factor n=1 Tax=Anaerococcus hydrogenalis DSM
7454 RepID=B6WAP8_9FIRM
Length = 617
Score = 79.0 bits (193), Expect = 3e-13
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P + EIA+ G+ ++++ +R
Sbjct: 450 ADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIAEQMGIEVEKVQE----IRK 505
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
++ +E P +I D + +P+ +R ++DVL CL +RE+++L
Sbjct: 506 IAQEPVSLETPIGEEEDSHLGDFIEDDTAINPDDAANYSMLRDQLNDVLSCLGAREKRVL 565
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
LRFGL D P++LE +G+ + V++ I QIE KAL KL
Sbjct: 566 QLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRKL 604
[174][TOP]
>UniRef100_C5YWX9 Putative uncharacterized protein Sb09g030350 n=1 Tax=Sorghum
bicolor RepID=C5YWX9_SORBI
Length = 529
Score = 79.0 bits (193), Expect = 3e-13
Identities = 51/163 (31%), Positives = 92/163 (56%), Gaps = 11/163 (6%)
Frame = -3
Query: 561 GITV-PWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSM 385
G+T+ P M + ++K+AR+ +R + + P D E+A G+S+ + A C R S+
Sbjct: 360 GVTLLPARMESIMRKVKEARRGIRYSEGRNPSDSEVAAAVGVSVANVRLARKCSRRPVSL 419
Query: 384 NCGV------EYPGYIPD---MSIESPEKTVM-KQHIRKDIHDVLQCLDSRERQILILRF 235
+ ++ IPD + E+P++ + + +R+ + VL L +RE +L LR
Sbjct: 420 YSEIGIGQHAKFAEVIPDEAAAAAEAPDEAALFRGQLRERLLLVLGRLPAREGHVLRLRH 479
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISK 106
GL D + +SLE IG +Y+VSK WI +IEK A+ +L ++ ++ +
Sbjct: 480 GLEDGRCRSLEEIGGMYRVSKEWIRKIEKSAMARLRDDDDVRR 522
[175][TOP]
>UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp.
SPB78 RepID=UPI0001B55E40
Length = 201
Score = 78.6 bits (192), Expect = 3e-13
Identities = 52/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP + + IN++ + ++ L P E+A + GL+ +R+ +
Sbjct: 33 ADQARTIRVPVHVVELINRVVRVQRGLLQERGHEPSHAEVAALLGLTKERVGEVLRLAQE 92
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V I D SP ++ +R+ + DVL L RERQ++ LR+
Sbjct: 93 PVSLHTPVGGEDEVALGDLIEDGDAPSPPESAALLLLRRHLEDVLSTLGERERQVVQLRY 152
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D +P++LE IG ++ V++ I QIE K L KL + ++ YLD
Sbjct: 153 GLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSHAFADQLRGYLD 201
[176][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K +A+ G+ +D+I + +
Sbjct: 162 ADQGRTIRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQE 221
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D SP + + +R+++ VL+ L RE ++L R+
Sbjct: 222 PISLETPVGSEEDSELGDFVEDQKTTSPYEATNRAILREELDAVLKTLSPREEKVLRYRY 281
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+ V++ I QIE KAL KL + + K+
Sbjct: 282 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKL 325
[177][TOP]
>UniRef100_Q6A8Y2 RNA polymerase sigma factor n=1 Tax=Propionibacterium acnes
RepID=Q6A8Y2_PROAC
Length = 506
Score = 78.6 bits (192), Expect = 3e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+A ++ +++I R
Sbjct: 338 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELASELDMTAEKVIEVQKYGRE 397
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +HDVL L RE ++ +RF
Sbjct: 398 PISLHTPLGEDGDSEFGDLIEDSEAIVPADAVNFTLLQEQLHDVLDTLSEREAGVVSMRF 457
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 458 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 506
[178][TOP]
>UniRef100_Q47MZ7 RNA polymerase sigma factor n=1 Tax=Thermobifida fusca YX
RepID=Q47MZ7_THEFY
Length = 616
Score = 78.6 bits (192), Expect = 3e-13
Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 448 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 507
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P + V +++ +H VL L RE ++ +RF
Sbjct: 508 PISLHTPLGEDGDSEFGDLIEDSEAIQPGEAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 567
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 568 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 616
[179][TOP]
>UniRef100_O67464 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67464_AQUAE
Length = 575
Score = 78.6 bits (192), Expect = 3e-13
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN+I KA K L + + P EIA+ + ++++ +
Sbjct: 407 ADQARTIRIPVHMIETINKIIKASKKLFQENGREPTPEEIAEYLDIPVEKVKKVMKFSQE 466
Query: 396 VSSMNCGVE------YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D SI +PE+ V ++ +R+ + VL L +ER+IL+ R+
Sbjct: 467 PISLETPIGDDDDTFLKDFIEDKSIPNPEEQVTRKLLREQLQKVLSTLSEKEREILMYRY 526
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
GL D +LE +G+++ V++ I QIE KAL KL
Sbjct: 527 GLVDGTEYTLEQVGKMFNVTRERIRQIENKALRKL 561
[180][TOP]
>UniRef100_A7NS26 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NS26_ROSCS
Length = 399
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P M +AI+Q+K+A L+ + P EIA G+S ++
Sbjct: 231 ADQSRTIRLPVHMGEAISQVKRASHKLQQMMQREPTPEEIADAMGISSTKVRRTLEASMH 290
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V G +I D I +P + +R+ + +VLQ L RER+I+ LR+
Sbjct: 291 PLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPERERKIIQLRY 350
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G + +++ I QIE AL KL + K+ YLD
Sbjct: 351 GLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYLD 399
[181][TOP]
>UniRef100_Q069K1 RNA polymerase sigma factor (Fragment) n=1 Tax=Fusobacterium
necrophorum RepID=Q069K1_9FUSO
Length = 185
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K +A+ G+ ++++ S +
Sbjct: 16 ADQGRTIRIPVHMIETINKIKKEARIYLQETGKDATPEILAERLGMEVEKVKSIQEMNQD 75
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D + +P + + +R+ + VL L SRE ++L R+
Sbjct: 76 PISLETPVGSEEDSELGDFVEDQKMLTPYELTNRSLLREQLDSVLGSLSSREEKVLRYRY 135
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+KV++ I QIE KAL KL + + K+
Sbjct: 136 GLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLRHPSRRKKL 179
[182][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K +A+ G+ +D+I + +
Sbjct: 247 ADQGRTIRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQE 306
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D SP + + +R+++ VL+ L RE ++L R+
Sbjct: 307 PISLETPVGSEEDSELGDFVEDQKTTSPYEATNRAILREELDAVLKTLSPREEKVLRYRY 366
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+ V++ I QIE KAL KL + + K+
Sbjct: 367 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKL 410
[183][TOP]
>UniRef100_C8PRS2 RNA polymerase sigma factor RpoD n=1 Tax=Treponema vincentii ATCC
35580 RepID=C8PRS2_9SPIO
Length = 607
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
AR I VP M + IN++ + + L + P D EIA G +++R+ + R S
Sbjct: 441 ARTIRVPVHMIEQINKVTRESRQLMQKFGREPTDEEIAVQLGWNVERVKQVKNVAREPIS 500
Query: 387 MNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
+ + +I D +E+P +++ + VL CL RE+++L +RFGL+
Sbjct: 501 LETPIGEEEDSSLGDFIEDKDVENPSNLTEYILLQEQLRSVLSCLPLREQEVLKMRFGLD 560
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
+ +LE +G + V++ I QIE KAL +L + +K+ YLD
Sbjct: 561 EGYALTLEEVGLYFNVTRERIRQIEAKALRRLRHPKQSTKLKDYLD 606
[184][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K +A+ G+ +D+I + +
Sbjct: 249 ADQGRTIRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQE 308
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D SP + + +R+++ VL+ L RE ++L R+
Sbjct: 309 PISLETPVGSEEDSELGDFVEDQKTTSPYEATNRAILREELDAVLKTLSPREEKVLRYRY 368
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+ V++ I QIE KAL KL + + K+
Sbjct: 369 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKL 412
[185][TOP]
>UniRef100_C7NIP6 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Kytococcus
sedentarius DSM 20547 RepID=C7NIP6_KYTSD
Length = 594
Score = 78.6 bits (192), Expect = 3e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 426 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 485
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 486 PISLHTPLGEDGDSEFGDLIEDSEAVVPSDAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 545
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IGR+Y V++ I QIE K ++KL + + + YLD
Sbjct: 546 GLADGQPKTLDEIGRVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 594
[186][TOP]
>UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H329_9FIRM
Length = 461
Score = 78.6 bits (192), Expect = 3e-13
Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 6/165 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++++A L + P E+AK +S++R+ +
Sbjct: 293 ADQARTIRIPVHMVETINRMRQATNQLVYQNGHEPTPEELAKAMDMSVERVREIQRMAQE 352
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
+S+ V ++ D + E+P K + + + I+ L+ L RE +++ LRF
Sbjct: 353 PASLESPVGEEEDSSLGDFVADENAEAPGKAADRAMVAQQINQALKSLTPREEKVIRLRF 412
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMN 100
GL+D +P++LE +GR + V++ + QIE KA+ KL + ++ +N
Sbjct: 413 GLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSRKCLALLN 457
[187][TOP]
>UniRef100_C4EHY7 RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum DSM
43021 RepID=C4EHY7_STRRS
Length = 367
Score = 78.6 bits (192), Expect = 3e-13
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P EIA L +DR+I +
Sbjct: 200 ADQARTIRIPVHMVETINKLVRVQRQLHQDLGREPAPEEIALEMDLPIDRVIEIQRIAQE 259
Query: 396 VSSMNCGV-----EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFG 232
S+ + + +I D P + ++ + D+L L RE++I+ LRFG
Sbjct: 260 PVSLQSPIGEEDSDLGDFIEDADAVVPMEAAAFIMLQDQLDDILATLSDREQRIIQLRFG 319
Query: 231 LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
L D P++LE +GR + V++ I QIE K L KL + T + YLD
Sbjct: 320 LADGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPTRAQMLRDYLD 367
[188][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K +A+ G+ +D+I + +
Sbjct: 248 ADQGRTIRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQE 307
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D SP + + +R+++ VL+ L RE ++L R+
Sbjct: 308 PISLETPVGSEEDSELGDFVEDQKTTSPYEATNRAILREELDAVLKTLSPREEKVLRYRY 367
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+ V++ I QIE KAL KL + + K+
Sbjct: 368 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKL 411
[189][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 78.6 bits (192), Expect = 3e-13
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K +A+ G+ +D+I + +
Sbjct: 171 ADQGRTIRIPVHMIETINKIKKESRIYLQETGKDASPEILAERLGMEVDKIKAIQEMNQE 230
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D SP + + +R+++ VL+ L RE ++L R+
Sbjct: 231 PISLETPVGSEEDSELGDFVEDQKTTSPYEATNRAILREELDAVLKTLSPREEKVLRYRY 290
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+ V++ I QIE KAL KL + + K+
Sbjct: 291 GLDDSSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRKKKL 334
[190][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APA0_TSUPA
Length = 330
Score = 78.6 bits (192), Expect = 3e-13
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + R+ L + D E+A +G+ ++I R
Sbjct: 162 ADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDAELAAESGIPAEKIADLMDHSRD 221
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + D+ VL LD RE+Q++ LR+
Sbjct: 222 PVSLDMPVGSDEEAPLGDFIEDAEAASAESAVISTLMHSDVRSVLATLDEREQQVIRLRY 281
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE++ ++KL N ++ Y
Sbjct: 282 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGERADRLRAY 328
[191][TOP]
>UniRef100_A6C4Z7 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797
RepID=A6C4Z7_9PLAN
Length = 561
Score = 78.6 bits (192), Expect = 3e-13
Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + +++++K K L + + P E A++ G+SL+ R
Sbjct: 369 ADQARTIRIPVHMIETMSKLRKVSKQLLQENGREPTLEETAEVAGISLEETRRVLKISRH 428
Query: 396 VSSMNCGVE------YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V + +I D +SP T ++ ++ I VL+ L RER+I+ LRF
Sbjct: 429 PISLDRPVGESEDSYFGDFIEDSDSDSPVNTASQEMLKDKIDHVLKTLTYREREIIKLRF 488
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +LE +GRI+KV++ + QIE KA+ KL + ++ +++
Sbjct: 489 GLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLQGFIE 537
[192][TOP]
>UniRef100_UPI0001B58A0C RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB78
RepID=UPI0001B58A0C
Length = 446
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 278 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 337
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 338 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 397
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 398 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 446
[193][TOP]
>UniRef100_UPI0001B5683C RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C
RepID=UPI0001B5683C
Length = 505
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 337 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 396
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 397 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 456
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 457 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 505
[194][TOP]
>UniRef100_UPI0001B51DD8 RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus
Tu4000 RepID=UPI0001B51DD8
Length = 509
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 341 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 400
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 401 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 460
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 461 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 509
[195][TOP]
>UniRef100_UPI0001B51157 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC
53653 RepID=UPI0001B51157
Length = 502
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 334 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 393
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 394 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 453
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 454 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 502
[196][TOP]
>UniRef100_UPI0001B506AC RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes
DSM 40736 RepID=UPI0001B506AC
Length = 559
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 391 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 450
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 451 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 510
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 511 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 559
[197][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
ATCC 12478 RepID=UPI0001AF41E8
Length = 319
Score = 78.2 bits (191), Expect = 4e-13
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A+ +G+ +D+I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVDKINDLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE Q++ LRF
Sbjct: 211 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE+ + KL + ++ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 317
[198][TOP]
>UniRef100_UPI0001AF2BE0 RNA polymerase sigma factor n=1 Tax=Streptomyces roseosporus NRRL
11379 RepID=UPI0001AF2BE0
Length = 515
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 347 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 406
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 407 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 466
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 467 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 515
[199][TOP]
>UniRef100_UPI0001AEF84E RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC
14672 RepID=UPI0001AEF84E
Length = 490
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 322 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 381
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 382 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 441
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 442 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 490
[200][TOP]
>UniRef100_UPI00017F508B RNA polymerase sigma factor rpoD n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F508B
Length = 294
Score = 78.2 bits (191), Expect = 4e-13
Identities = 47/163 (28%), Positives = 94/163 (57%), Gaps = 8/163 (4%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSSMNC 379
I +P +++ IN +KK ++ L + ++ P EIA GL +D+++ + V S++
Sbjct: 131 IRIPIHLHQRINFVKKKKQELLNVLLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDT 190
Query: 378 GVEYPG------YIP-DMSIESPEKTVMKQH-IRKDIHDVLQCLDSRERQILILRFGLND 223
++ +IP D + ++QH +++ I ++L L +E+Q+L +RFG++D
Sbjct: 191 PLKEDEDSSLVEFIPSDADFKDVVMHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDD 250
Query: 222 HKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
PK+LE IGR++ V++ I QIE KA+ KL + + + ++ ++
Sbjct: 251 DDPKTLEQIGRVFGVTRERIRQIEAKAIRKLRHPSKLKQLKHF 293
[201][TOP]
>UniRef100_Q82KF9 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
RepID=Q82KF9_STRAW
Length = 512
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 344 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 403
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 404 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 463
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 464 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 512
[202][TOP]
>UniRef100_C5CCM1 RNA polymerase sigma factor n=1 Tax=Micrococcus luteus NCTC 2665
RepID=C5CCM1_MICLC
Length = 497
Score = 78.2 bits (191), Expect = 4e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 329 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 388
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 389 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVAMRF 448
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 449 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 497
[203][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV3_MYCLB
Length = 319
Score = 78.2 bits (191), Expect = 4e-13
Identities = 47/167 (28%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A +G+ +++I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIEKINDLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE Q++ LRF
Sbjct: 211 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE+ + KL N ++ Y
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRSY 317
[204][TOP]
>UniRef100_A9B077 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B077_HERA2
Length = 386
Score = 78.2 bits (191), Expect = 4e-13
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P M +AI+Q+K+ L+ T + P EIA+ G++ ++
Sbjct: 218 ADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIAEAMGITASKVRRTLEASMH 277
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V G +I D + +P +R+ I +VLQ L RER+I+ LR+
Sbjct: 278 PLSLEMPVGQEGEGRMGDFIEDDRVSTPVDAAAMTMLREQIEEVLQKLPERERKIIQLRY 337
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G + +++ I QIE AL KL + K+ YLD
Sbjct: 338 GLKDGRYRTLEEVGLEFGITRERIRQIEAVALRKLRHPHLGKKLRGYLD 386
[205][TOP]
>UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus
RepID=Q9R5W0_STRGR
Length = 357
Score = 78.2 bits (191), Expect = 4e-13
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP + + IN++ + ++ L + + P E+ + GLS +++ R
Sbjct: 189 ADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVEEVLRLARE 248
Query: 396 VSSMNCGVE------YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V I D SP ++ +R+ + VL L RERQ++ LR+
Sbjct: 249 PISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRY 308
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
G +D +P++LE IGR++ V++ + QIE K L +L T ++ YL+
Sbjct: 309 GFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE 357
[206][TOP]
>UniRef100_Q59913 RNA polymerase sigma factor n=2 Tax=Streptomyces RepID=Q59913_STRGR
Length = 510
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 342 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 401
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 402 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 461
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 462 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 510
[207][TOP]
>UniRef100_Q59813 RNA polymerase sigma factor n=1 Tax=Streptomyces aureofaciens
RepID=Q59813_STRAU
Length = 525
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 357 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 416
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 417 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 476
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 477 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 525
[208][TOP]
>UniRef100_C9Z0K3 Major vegetative sigma factor HrdB n=1 Tax=Streptomyces scabiei
87.22 RepID=C9Z0K3_STRSC
Length = 516
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 348 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 407
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 408 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 467
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 468 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 516
[209][TOP]
>UniRef100_C9NBA0 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Streptomyces flavogriseus ATCC 33331
RepID=C9NBA0_9ACTO
Length = 515
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 347 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 406
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 407 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 466
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 467 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 515
[210][TOP]
>UniRef100_C8PE38 RNA polymerase sigma factor RpoD n=1 Tax=Campylobacter gracilis
RM3268 RepID=C8PE38_9PROT
Length = 626
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/170 (28%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN+I K + K P+ + IA+ GLS+D++ +
Sbjct: 456 ADQARTIRIPIHMIETINRINKITRKYMQEGGKEPDINVIAQEVGLSVDKVKQVIKITKE 515
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ ++ D S SP + ++K +++ I D+L+ L+ RER ++ +RF
Sbjct: 516 PISLEAPIGNEDDGKFGDFVEDKSSVSPIEQILKSDLKEQIDDILEQLNDRERTVIRMRF 575
Query: 234 G-LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
G L+D ++LE IG+ +++ + QIE A+ KL + K+ Y++
Sbjct: 576 GLLDDESDRTLEEIGKELNITRERVRQIESSAIKKLKHPKIGRKLKTYIE 625
[211][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 78.2 bits (191), Expect = 4e-13
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P EI +S D++ +
Sbjct: 214 ADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMSTDKVREILKIAQE 273
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D SPE+ + +++ + +VL L RE +L LRF
Sbjct: 274 PVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEEVLDTLTDREENVLRLRF 333
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GLND + ++LE +GR++ V++ I QIE KAL KL + + +++ +LD
Sbjct: 334 GLNDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFLD 382
[212][TOP]
>UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC
49989 RepID=C7GZY7_9FIRM
Length = 447
Score = 78.2 bits (191), Expect = 4e-13
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + I+++ + + L + P+ EIAK ++ +++ +
Sbjct: 279 ADQARTIRIPVHMVETIHKLTRISRTLLQELGREPKPEEIAKEMDITTEKVRD----ILR 334
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
+S +E P +IPD + SP +R ++ +VL L RER +L
Sbjct: 335 ISQEPVSLEKPIGEEEDSHLGDFIPDTEVPSPLDVAFSSMLRDELLEVLNTLGERERNVL 394
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL D K ++LE +G+ + V++ I QIE KA+ KL + K+ Y+D
Sbjct: 395 KLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLKHPNMSKKLRDYID 447
[213][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
RepID=C6JI10_FUSVA
Length = 414
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A R I +P M + IN+IKK ++ + K + + G+ +D++ + +
Sbjct: 246 ADQGRTIRIPVHMIETINKIKKEARIYLQETGKDATPEVLGERLGMEVDKVKAIQEMNQD 305
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V E ++ D + +P + + +R+ ++ VL L SRE ++L R+
Sbjct: 306 PISLETPVGSEEDSELGDFVEDHKMLNPYELTNRSLLREQLNGVLNTLSSREERVLRYRY 365
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKM 103
GL+D PK+LE +G+I+KV++ I QIE KAL KL + + K+
Sbjct: 366 GLDDGSPKTLEEVGKIFKVTRERIRQIEVKALRKLRHPSRRKKL 409
[214][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CIZ0_9CHLR
Length = 390
Score = 78.2 bits (191), Expect = 4e-13
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 6/166 (3%)
Frame = -3
Query: 567 ARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRTVSS 388
+R I +P + + IN++KK + L+ + P E+A+ + +++ R S
Sbjct: 225 SRTIRLPVHVGETINRVKKTSQRLQQIFEREPTFEEVARAMDIPEEKVRQVLDASRHPVS 284
Query: 387 MNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLN 226
+ V G +I D ++ P + ++ ++ I D L L RER+I+ILRFGL
Sbjct: 285 LEAPVGQEGDAFLGDFIEDDTMPPPLELASQELLKHQISDALSKLTERERRIIILRFGLE 344
Query: 225 DHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
D + ++LE +GR + +++ I QIE KAL KL + T ++ YLD
Sbjct: 345 DGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPTYSHRLRGYLD 390
[215][TOP]
>UniRef100_C2BII3 RNA polymerase sigma factor n=1 Tax=Anaerococcus lactolyticus ATCC
51172 RepID=C2BII3_9FIRM
Length = 601
Score = 78.2 bits (191), Expect = 4e-13
Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 10/159 (6%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ L + P + EIA + G+ ++++ +R
Sbjct: 434 ADQARTIRIPVHMVETINKLVRIQRQLVQDLGRDPSNEEIADIMGIEVEKVSE----IRK 489
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
++ +E P +I D + P + +R+ ++DVL CL +RE+++L
Sbjct: 490 IAQEPVSLETPIGEEDDSHLGDFIEDDTAIDPGEAANYTMLREQLNDVLSCLGAREKRVL 549
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
LRFGL D P++LE +G+ + V++ I QIE KAL KL
Sbjct: 550 QLRFGLIDGTPRTLEEVGKEFDVTRERIRQIEAKALRKL 588
[216][TOP]
>UniRef100_B5GW69 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC
27064 RepID=B5GW69_STRCL
Length = 514
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 346 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 405
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 406 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 465
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 466 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 514
[217][TOP]
>UniRef100_B5G756 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74
RepID=B5G756_9ACTO
Length = 512
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 344 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 403
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 404 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 463
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 464 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 512
[218][TOP]
>UniRef100_B4VFQ3 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
RepID=B4VFQ3_9ACTO
Length = 520
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 352 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 411
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 412 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 471
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 472 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 520
[219][TOP]
>UniRef100_P77951 RNA polymerase principal sigma factor hrdB n=2 Tax=Streptomyces
griseus RepID=HRDB_STRGR
Length = 514
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 346 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 405
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 406 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 465
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 466 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 514
[220][TOP]
>UniRef100_P18183 RNA polymerase principal sigma factor hrdB n=2 Tax=Streptomyces
RepID=HRDB_STRCO
Length = 511
Score = 78.2 bits (191), Expect = 4e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 343 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 402
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 403 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 462
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 463 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 511
[221][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 77.8 bits (190), Expect = 6e-13
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIAK +S+DR+ +
Sbjct: 198 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMEISVDRVREIMKIAQE 257
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ + +VL L RE ++L LRF
Sbjct: 258 PVSLETPIGEEEDSHLGDFIPDDDALAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRF 317
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 318 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 366
[222][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 77.8 bits (190), Expect = 6e-13
Identities = 53/159 (33%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + + + P EIAK G+ +++ LRT
Sbjct: 408 ADQARTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKV---RKILRT 464
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
S +E P +I D ++ SPE+ V++Q +R+ + +VL L RE Q+L
Sbjct: 465 -SQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQALRQQLEEVLSTLSEREEQVL 523
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
RFGL D +LE +G+ + V++ I QIE KAL KL
Sbjct: 524 RYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKL 562
[223][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NG03_ROSCS
Length = 541
Score = 77.8 bits (190), Expect = 6e-13
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + + + P D E+++ G+ +D++ S +R
Sbjct: 373 ADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPVDKVRS----IRK 428
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
S +E P +I D + +P Q +R+ + VL L RER++L
Sbjct: 429 TSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQLTERERRVL 488
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL D ++LE +G+ + V++ I QIE KAL KL + K+ YL+
Sbjct: 489 QLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKLRDYLE 541
[224][TOP]
>UniRef100_A6W880 RNA polymerase sigma factor n=1 Tax=Kineococcus radiotolerans
SRS30216 RepID=A6W880_KINRD
Length = 502
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 334 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 393
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 394 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 453
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 454 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 502
[225][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 77.8 bits (190), Expect = 6e-13
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + + + P D E+++ G+ +D++ S +R
Sbjct: 373 ADQARTIRIPVHMVETINRLMRESRRMLQELGREPTDEELSRALGIPVDKVRS----IRK 428
Query: 396 VSSMNCGVEYP----------GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQIL 247
S +E P +I D + +P Q +R+ + VL L RER++L
Sbjct: 429 TSLEPVSLETPVGQEEDSQLGDFIEDSKVLAPSDAASHQMLREQVEQVLNQLTERERRVL 488
Query: 246 ILRFGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
LRFGL D ++LE +G+ + V++ I QIE KAL KL + K+ YL+
Sbjct: 489 QLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRLGKKLRDYLE 541
[226][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 77.8 bits (190), Expect = 6e-13
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK+ + +D++ +
Sbjct: 200 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMEMPVDKVREIMKIAQE 259
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ + +VL L RE ++L LRF
Sbjct: 260 PVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRF 319
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 320 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 368
[227][TOP]
>UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
RepID=P77906_MYCTU
Length = 345
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A +G+ +D+I R
Sbjct: 177 ADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRD 236
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE Q++ LRF
Sbjct: 237 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 296
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE+ ++KL + ++ Y
Sbjct: 297 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 343
[228][TOP]
>UniRef100_C9KB66 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Sanguibacter
keddieii DSM 10542 RepID=C9KB66_9MICO
Length = 516
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 348 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 407
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 408 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHQVLDTLSEREAGVVSMRF 467
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 468 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 516
[229][TOP]
>UniRef100_C7R4M2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Jonesia
denitrificans DSM 20603 RepID=C7R4M2_JONDD
Length = 504
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 336 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 395
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 396 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHQVLDTLSEREAGVVSMRF 455
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 456 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 504
[230][TOP]
>UniRef100_C7QCX2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Catenulispora acidiphila DSM 44928
RepID=C7QCX2_CATAD
Length = 559
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 391 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 450
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 451 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 510
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 511 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 559
[231][TOP]
>UniRef100_C7MCF9 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Brachybacterium
faecium DSM 4810 RepID=C7MCF9_BRAFD
Length = 433
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 265 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 324
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 325 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 384
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 385 GLEDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 433
[232][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 77.8 bits (190), Expect = 6e-13
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK+ + +D++ +
Sbjct: 200 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMEMPVDKVREIMKIAQE 259
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ + +VL L RE ++L LRF
Sbjct: 260 PVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRF 319
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 320 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 368
[233][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4FZZ1_ABIDE
Length = 372
Score = 77.8 bits (190), Expect = 6e-13
Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ +A++ L T + P+ EI K + +++ S +
Sbjct: 204 ADQARTIRIPVHMVETINKLIRAQRQLTQTLGREPQPEEIGKELNMEPEKVRSIMKIAQE 263
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S + +IPD S +P + +++ + +VL L RE +++ LRF
Sbjct: 264 PVSFETPIGEEEDSHIGDFIPDDSNMAPVEAATHAILKEQLEEVLDSLTEREARVIKLRF 323
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G+ + V++ I QIE KAL KL + K+ YL+
Sbjct: 324 GLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQPSRSRKLKDYLE 372
[234][TOP]
>UniRef100_C2ADB9 RNA polymerase sigma factor n=1 Tax=Thermomonospora curvata DSM
43183 RepID=C2ADB9_THECU
Length = 380
Score = 77.8 bits (190), Expect = 6e-13
Identities = 48/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 212 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 271
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 272 PISLHTPLGEDGDSEFGDLIEDSEAIVPADAVSFTLLQEQLHSVLDTLSEREAGVVSMRF 331
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 332 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 380
[235][TOP]
>UniRef100_C1ZAZ0 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
3776 RepID=C1ZAZ0_PLALI
Length = 550
Score = 77.8 bits (190), Expect = 6e-13
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + +++++K K L + P E A+ G+SL+ R
Sbjct: 374 ADQARTIRIPVHMIETMSKLRKVAKKLLQEMGREPTLEETAEAAGVSLEETRRVMKISRH 433
Query: 396 VSSMNCGVE------YPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V + +I D + ESP ++ ++ I +VL+ L RER+I+ LR+
Sbjct: 434 PISLDRPVGESEDSYFGDFIEDDNTESPVMAATQEMLKDKIDNVLKTLTYREREIIKLRY 493
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +LE +GRI+KV++ + QIE KA+ KL + ++ +LD
Sbjct: 494 GLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFLD 542
[236][TOP]
>UniRef100_C1WS55 RNA polymerase sigma factor n=1 Tax=Kribbella flavida DSM 17836
RepID=C1WS55_9ACTO
Length = 401
Score = 77.8 bits (190), Expect = 6e-13
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ +++I R
Sbjct: 233 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVIEVQKYGRE 292
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P + V +++ +H VL L RE ++ +RF
Sbjct: 293 PISLHTPLGEDGDSEFGDLIEDSEAIVPAEAVSFTLLQEQLHAVLDTLSEREAGVVSMRF 352
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 353 GLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 401
[237][TOP]
>UniRef100_C0V8H1 RNA polymerase sigma factor n=1 Tax=Xylanimonas cellulosilytica DSM
15894 RepID=C0V8H1_9MICO
Length = 543
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 375 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGRE 434
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 435 PISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHQVLDTLSEREAGVVSMRF 494
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 495 GLQDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 543
[238][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIA + +S +R+ +
Sbjct: 204 ADQARTIRIPVHMVETINKLIRVSRQLVQELGREPAPDEIAHVMNISEERVREILKIAQE 263
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +I D +++P + + +++ + DVL+ L RE+++L LRF
Sbjct: 264 PVSLETPIGEEDDSHLGDFIEDQDVQAPAEAAAFELLKEQLDDVLETLTPREKKVLTLRF 323
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D + ++LE +G+++ V++ I QIE KAL KL + ++ YL+
Sbjct: 324 GLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSKRLKDYLE 372
[239][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 77.8 bits (190), Expect = 6e-13
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ EIAK+ + +D++ +
Sbjct: 200 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMEMPVDKVREIMKIAQE 259
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ + +VL L RE ++L LRF
Sbjct: 260 PVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRF 319
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 320 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 368
[240][TOP]
>UniRef100_A7BDF7 RNA polymerase sigma factor n=1 Tax=Actinomyces odontolyticus ATCC
17982 RepID=A7BDF7_9ACTO
Length = 561
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + ++ + + P E+AK ++ ++++ R
Sbjct: 393 ADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTAEKVVEVQKYGRE 452
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ + E+ I D P V +++ +H VL L RE ++ +RF
Sbjct: 453 PISLHTPLGEDGDSEFGDLIEDSEAIVPADAVSFTLLQEQLHHVLDTLSEREAGVVSMRF 512
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D +PK+L+ IG++Y V++ I QIE K ++KL + + + YLD
Sbjct: 513 GLGDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 561
[241][TOP]
>UniRef100_A5WQW2 RNA polymerase sigma factor n=9 Tax=Mycobacterium tuberculosis
complex RepID=A5WQW2_MYCTF
Length = 345
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/167 (28%), Positives = 89/167 (53%), Gaps = 6/167 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A +G+ +D+I R
Sbjct: 177 ADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRD 236
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE Q++ LRF
Sbjct: 237 PVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRF 296
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYY 94
GL+D +P++L+ IG+++ +S+ + QIE+ ++KL + ++ Y
Sbjct: 297 GLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 343
[242][TOP]
>UniRef100_A0ZIW0 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZIW0_NODSP
Length = 442
Score = 77.8 bits (190), Expect = 6e-13
Identities = 52/169 (30%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIA---KMTGLSLDRI---ISA 415
A +R I +P + + +N+IKKA++ + + P ++A +MT + + +
Sbjct: 272 ATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPTQVREVLLKVPR 331
Query: 414 SHCLRTVSSMNCGVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S L T + E G + + +PE+ +M++ ++KD+H +L L SRER ++++RF
Sbjct: 332 SVSLETKVGKDKDTEL-GELLETDCVTPEEMLMRESLQKDLHSLLADLTSRERDVILMRF 390
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D P SL IGR +S+ + QIE KAL KL + + YL+
Sbjct: 391 GLSDGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYLE 439
[243][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 77.8 bits (190), Expect = 6e-13
Identities = 47/161 (29%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Frame = -3
Query: 558 ITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISA----SHCLRTVS 391
I +P M +A +++K+ + L + P + EIA TG+++ R+ +A + + S
Sbjct: 361 IRLPAHMAEASSRVKECCRRLGRELKRLPSNEEIAVDTGMTIRRVEAAMSLPKYSVSFTS 420
Query: 390 SMNC-GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRFGLNDHKP 214
+ C V Y +PD S E+ E+T+ + ++KD++ L L R++Q++ RFG+ +
Sbjct: 421 KVGCTDVTYQEIMPDTSAETAEETLHRWLMKKDVNTALDSLSPRKKQVMRYRFGIEGGRA 480
Query: 213 KSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYL 91
++L IG++ VS+ I QIE A KL ++ + + +YL
Sbjct: 481 RTLHDIGQLMGVSRERIRQIELGAFRKLRSKNRLQSLQHYL 521
[244][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 77.4 bits (189), Expect = 7e-13
Identities = 49/169 (28%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P EIAK G+S D++ +
Sbjct: 202 ADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREIMKIAQE 261
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ D ++P + +R+ + +VL+ L RE+++L LRF
Sbjct: 262 PVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTLTEREQKVLRLRF 321
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D + ++LE +G+I+ V++ I QIE KAL KL + + K+ +L+
Sbjct: 322 GLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFLE 370
[245][TOP]
>UniRef100_A7ZE90 RNA polymerase sigma factor n=1 Tax=Campylobacter concisus 13826
RepID=A7ZE90_CAMC1
Length = 617
Score = 77.4 bits (189), Expect = 7e-13
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 7/170 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN+I K + K P+ IAK GLS+D++ +
Sbjct: 447 ADQARTIRIPIHMIETINRINKINRKYLQEEGKEPDVSVIAKEVGLSVDKVKQVIKITKE 506
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + ++ ++ D + SP ++K +R+ I DVL L+ RE+ ++ +RF
Sbjct: 507 PISLEAPIANEEDGKFGDFVEDKTSLSPIDQILKSDLREQIDDVLSQLNEREKAVISMRF 566
Query: 234 G-LNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
G L D ++LE IG+ V++ + QIE A+ KL + K+ Y++
Sbjct: 567 GLLEDESDRTLEEIGKALNVTRERVRQIESSAIKKLKHPKVGRKLKNYIE 616
[246][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 77.4 bits (189), Expect = 7e-13
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I VP M + IN+I+K ++ + P IA+ G +D+I
Sbjct: 199 ADQARTIRVPVHMVETINKIQKIKREYVQEHGEEPSIEYIAEQVGKPVDKIEEILQAAPE 258
Query: 396 VSSMNCGVEYPG------YIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ V +I D SI SP+K ++ +R++I +L+ L+ RE+++L +R+
Sbjct: 259 TLSLETPVNEEDDSSMGDFIADESIGSPKKEAIRTLMREEIDKLLETLNDREKKVLKMRY 318
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
GL + KP +LE +G+ + V++ I QIE KAL KL
Sbjct: 319 GLYNGKPMTLEEVGQFFGVTRERIRQIEVKALRKL 353
[247][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
RepID=Q59553_MYCSM
Length = 319
Score = 77.4 bits (189), Expect = 7e-13
Identities = 46/157 (29%), Positives = 88/157 (56%), Gaps = 6/157 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A +R I +P + + +N++ + ++ + + D E+A+ +G+ +++I R
Sbjct: 151 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRD 210
Query: 396 VSSMNCGV----EYP--GYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ V E P +I D S E V+ + + DI VL LD RE+Q++ LRF
Sbjct: 211 PVSLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRF 270
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWN 124
GL+D +P++L+ IG+++ +S+ + QIE++ + KL N
Sbjct: 271 GLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRN 307
[248][TOP]
>UniRef100_B1XNJ6 RNA polymerase sigma factor n=2 Tax=Synechococcus
RepID=B1XNJ6_SYNP2
Length = 365
Score = 77.4 bits (189), Expect = 7e-13
Identities = 45/156 (28%), Positives = 89/156 (57%), Gaps = 7/156 (4%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P + + +N++KKA++ L+ T + P + E+A+ ++ D++ R
Sbjct: 196 ANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAELAQELDITADQLHQLLQLRRQ 255
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVL-QCLDSRERQILILR 238
S+N V E + D ++ PE+ + + +R+++ DVL L RE++++ LR
Sbjct: 256 SLSLNHRVGKGEDTELVDLLEDDGLQLPEERMSEAMMRQELWDVLGDVLTDREKEVIALR 315
Query: 237 FGLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKL 130
+GL+ +P +LE +G ++ +S+ + QI+ KA+ KL
Sbjct: 316 YGLSSEQPHTLEEVGGMFNLSRERVRQIQSKAMRKL 351
[249][TOP]
>UniRef100_C9KGU4 RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family n=1 Tax=Sanguibacter
keddieii DSM 10542 RepID=C9KGU4_9MICO
Length = 342
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ +A++ + + P E+A ++ ++++ R
Sbjct: 174 ADQARTIRIPVHMVEVINKVSRAQRQMLQDLGREPTPEELALELDMTPEKVLEVQKHGRE 233
Query: 396 VSSMNC------GVEYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S++ G E+ I D P V +++ IH +L L RE ++ +R+
Sbjct: 234 PISLHTPLGEEGGSEFGDLIEDTEAVVPADAVNFSFLQQQIHGILDTLSEREAGVITMRY 293
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL D PK+L+ IG +Y V++ I QIE K ++KL + + + YLD
Sbjct: 294 GLTDGLPKTLDQIGHVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 342
[250][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 77.4 bits (189), Expect = 7e-13
Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Frame = -3
Query: 576 AKYARGITVPWSMNKAINQIKKARKVLRSTSMKYPEDHEIAKMTGLSLDRIISASHCLRT 397
A AR I +P M + IN++ + + L + P+ E+AK+ + +D++ +
Sbjct: 193 ADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEVAKIMEMPVDKVREIMKIAQE 252
Query: 396 VSSMNCGV------EYPGYIPDMSIESPEKTVMKQHIRKDIHDVLQCLDSRERQILILRF 235
S+ + +IPD +P + +++ + +VL L RE ++L LRF
Sbjct: 253 PVSLETPIGEEEDSHLGDFIPDDEAPAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRF 312
Query: 234 GLNDHKPKSLEYIGRIYKVSKAWIWQIEKKALTKLWNETNISKMNYYLD 88
GL+D + ++LE +G+ + V++ I QIE KAL KL + + K+ YLD
Sbjct: 313 GLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYLD 361