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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 328 bits (840), Expect = 2e-88
Identities = 151/192 (78%), Positives = 169/192 (88%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G
Sbjct: 427 TIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGT 486
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 362
VDV+EEL+LNVNVALMELYLHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQT
Sbjct: 487 VDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQT 546
Query: 363 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 542
GML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPL
Sbjct: 547 GMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPL 606
Query: 543 KMGVLGEHVPIK 578
KMGV GEHVPI+
Sbjct: 607 KMGVCGEHVPIQ 618
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 328 bits (840), Expect = 2e-88
Identities = 151/192 (78%), Positives = 169/192 (88%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G
Sbjct: 1867 TIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGT 1926
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 362
VDV+EEL+LNVNVALMELYLHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQT
Sbjct: 1927 VDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQT 1986
Query: 363 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 542
GML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPL
Sbjct: 1987 GMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPL 2046
Query: 543 KMGVLGEHVPIK 578
KMGV GEHVPI+
Sbjct: 2047 KMGVCGEHVPIQ 2058
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 313 bits (803), Expect = 5e-84
Identities = 148/191 (77%), Positives = 165/191 (86%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH QK S + GE
Sbjct: 427 TIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGE 486
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 362
VDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQT
Sbjct: 487 VDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQT 546
Query: 363 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 542
GM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PL
Sbjct: 547 GMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPL 606
Query: 543 KMGVLGEHVPI 575
K GV GE+VPI
Sbjct: 607 KPGVQGEYVPI 617
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 313 bits (803), Expect = 5e-84
Identities = 148/191 (77%), Positives = 165/191 (86%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TIE+K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH QK S + GE
Sbjct: 1869 TIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGE 1928
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 362
VDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQT
Sbjct: 1929 VDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQT 1988
Query: 363 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 542
GM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PL
Sbjct: 1989 GMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPL 2048
Query: 543 KMGVLGEHVPI 575
K GV GE+VPI
Sbjct: 2049 KPGVQGEYVPI 2059
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 272 bits (695), Expect = 2e-71
Identities = 128/193 (66%), Positives = 158/193 (81%), Gaps = 1/193 (0%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSG 179
TIE+KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K KF +KA Y G
Sbjct: 425 TIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLG 484
Query: 180 EVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQ 359
EVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQ
Sbjct: 485 EVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQ 544
Query: 360 TGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEP 539
TGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P
Sbjct: 545 TGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLP 604
Query: 540 LKMGVLGEHVPIK 578
+K G G H+PIK
Sbjct: 605 IKQGE-GVHIPIK 616
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 272 bits (695), Expect = 2e-71
Identities = 128/193 (66%), Positives = 158/193 (81%), Gaps = 1/193 (0%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSG 179
TIE+KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K KF +KA Y G
Sbjct: 1851 TIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLG 1910
Query: 180 EVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQ 359
EVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQ
Sbjct: 1911 EVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQ 1970
Query: 360 TGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEP 539
TGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P
Sbjct: 1971 TGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLP 2030
Query: 540 LKMGVLGEHVPIK 578
+K G G H+PIK
Sbjct: 2031 IKQGE-GVHIPIK 2042
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 184 bits (468), Expect = 3e-45
Identities = 96/191 (50%), Positives = 124/191 (64%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Q V
Sbjct: 436 IKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-V 494
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
D + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTG
Sbjct: 495 DTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTG 554
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLK 545
M + PA +D G +F +FMH S+ GN+ HF L V GP YKP + +VST PLK
Sbjct: 555 MEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLK 614
Query: 546 MGVLGEHVPIK 578
G G VP++
Sbjct: 615 QGESGYWVPVE 625
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 184 bits (468), Expect = 3e-45
Identities = 96/191 (50%), Positives = 124/191 (64%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Q V
Sbjct: 1926 IKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-V 1984
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
D + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTG
Sbjct: 1985 DTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTG 2044
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLK 545
M + PA +D G +F +FMH S+ GN+ HF L V GP YKP + +VST PLK
Sbjct: 2045 MEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLK 2104
Query: 546 MGVLGEHVPIK 578
G G VP++
Sbjct: 2105 QGESGYWVPVE 2115
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 100 bits (249), Expect = 8e-20
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 6/198 (3%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
T+ KP LDFLKR F D G + APLD TAI+SSL+W+
Sbjct: 1623 TLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ-------------- 1668
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 362
DV+ L N AL+E++ H D EF +RSF+V+++P D TW FH +QQ
Sbjct: 1669 -DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQH 1726
Query: 363 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVS 530
G + + P + ++ + + K M ++ G + H + + V GP + + C++ F+VS
Sbjct: 1727 GAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVS 1785
Query: 531 TEPLKMG--VLGEHVPIK 578
T PL G H+P++
Sbjct: 1786 TLPLSRAEKFSGIHIPVE 1803
[10][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 95.1 bits (235), Expect = 3e-18
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 1/184 (0%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TI ++P EL+FLKR F++ G+I APL+ +I SSL ++ S
Sbjct: 1878 TIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR---------------SDG 1922
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQ 359
D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + TW ESFH Q+
Sbjct: 1923 SDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQK 1982
Query: 360 TGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEP 539
+G + P +++ G F F + + H L + G Y E + ++S
Sbjct: 1983 SGESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSS 2042
Query: 540 LKMG 551
+ G
Sbjct: 2043 VLPG 2046
[11][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 92.8 bits (229), Expect = 2e-17
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 1/189 (0%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TI ++P EL+FLKR K + G+I APL+ +I SSL ++ S
Sbjct: 1879 TIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR---------------SDG 1923
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQ 359
D++++LV NVN AL+EL+LH D + F VR+F++ +LP + TW ++FH Q
Sbjct: 1924 SDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQL 1983
Query: 360 TGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEP 539
+G P +++ GV F F+ + H L + G Y +E+ ++S
Sbjct: 1984 SGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSS 2043
Query: 540 LKMGVLGEH 566
L G + H
Sbjct: 2044 LLPGDVNAH 2052
[12][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 90.9 bits (224), Expect = 6e-17
Identities = 62/192 (32%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AIFSSLY++ P +
Sbjct: 703 LRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP----------------QG 746
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
+ + L LN VAL ELYLHND ++F VR+F+VT++ W C +FH Q +
Sbjct: 747 NTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQ 806
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTS 864
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 865 LKANEGGLYFPV 876
[13][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 90.1 bits (222), Expect = 1e-16
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 1/184 (0%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TI ++P EL+FLKR F K + G+I APL+ +I SSL ++ S
Sbjct: 418 TIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---------------SDG 462
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQ 359
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q
Sbjct: 463 SDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQL 522
Query: 360 TGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEP 539
+G P +++ G F F+ + + H L + G Y EE+ ++S
Sbjct: 523 SGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSS 582
Query: 540 LKMG 551
L G
Sbjct: 583 LLPG 586
[14][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 90.1 bits (222), Expect = 1e-16
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 1/184 (0%)
Frame = +3
Query: 3 TIESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE 182
TI ++P EL+FLKR F K + G+I APL+ +I SSL ++ S
Sbjct: 1877 TIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---------------SDG 1921
Query: 183 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQ 359
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q
Sbjct: 1922 SDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQL 1981
Query: 360 TGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEP 539
+G P +++ G F F+ + + H L + G Y EE+ ++S
Sbjct: 1982 SGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSS 2041
Query: 540 LKMG 551
L G
Sbjct: 2042 LLPG 2045
[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 89.4 bits (220), Expect = 2e-16
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AI+SSLY++ P +
Sbjct: 429 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QG 472
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 473 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 532
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 533 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 590
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 591 LKANEGGLYFPV 602
[16][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 89.4 bits (220), Expect = 2e-16
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AI+SSLY++ P +
Sbjct: 703 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QG 746
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 865 LKANEGGLYFPV 876
[17][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 89.4 bits (220), Expect = 2e-16
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AI+SSLY++ P +
Sbjct: 1915 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QG 1958
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 1959 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 2018
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 2019 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 2076
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 2077 LKANEGGLYFPV 2088
[18][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 88.6 bits (218), Expect = 3e-16
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AI+SSLY++ P +
Sbjct: 703 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QG 746
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 865 LKANEGGLYFPV 876
[19][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 88.6 bits (218), Expect = 3e-16
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AI+SSLY++ P +
Sbjct: 703 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QG 746
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 865 LKANEGGLYFPV 876
[20][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 88.2 bits (217), Expect = 4e-16
Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+ +KP +LDFLKR F G + APLD+ AI+SSLY++ P +
Sbjct: 429 LRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QG 472
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 473 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQ 532
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 539
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 533 WKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTS 590
Query: 540 LKMGVLGEHVPI 575
LK G + P+
Sbjct: 591 LKANEGGLYFPV 602
[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 87.0 bits (214), Expect = 9e-16
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 3/191 (1%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
+E+KP +LDFLKR FL D+G + LD T I+SSL +L S +
Sbjct: 1927 LEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR---------------SADC 1971
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESFHSSQ 356
D I L NV AL ELY D +EF +R+F++ RLP+ + + W C ++
Sbjct: 1972 DPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRAR 2031
Query: 357 QTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTE 536
TG +PA VLD + K FM + N + + VCGP + + +
Sbjct: 2032 YTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFN 2091
Query: 537 PLKMGVLGEHV 569
L G G +
Sbjct: 2092 RLAAGETGVQI 2102
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 79.3 bits (194), Expect = 2e-13
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T H
Sbjct: 420 IEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI----------- 468
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
L NV+ AL+ELYLH + F +R F+ R +W +FH Q +G
Sbjct: 469 ----ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISG 522
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVS 530
+ P + D VD + + +A F T + + +CGP + E F+VS
Sbjct: 523 VTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVS 580
Query: 531 TEPLKMGVLGEHV 569
T PL+ G +
Sbjct: 581 TTPLRSADRGSGI 593
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 79.3 bits (194), Expect = 2e-13
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 5/193 (2%)
Frame = +3
Query: 6 IESKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEV 185
IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T H
Sbjct: 1807 IEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI----------- 1855
Query: 186 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 365
L NV+ AL+ELYLH + F +R F+ R +W +FH Q +G
Sbjct: 1856 ----ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISG 1909
Query: 366 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVS 530
+ P + D VD + + +A F T + + +CGP + E F+VS
Sbjct: 1910 VTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVS 1967
Query: 531 TEPLKMGVLGEHV 569
T PL+ G +
Sbjct: 1968 TTPLRSADRGSGI 1980