[UP]
[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 322 bits (826), Expect = 1e-86
Identities = 155/193 (80%), Positives = 169/193 (87%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TL
Sbjct: 351 VNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITL 410
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
AEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP
Sbjct: 411 AEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPD 470
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q
Sbjct: 471 KSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQ 530
Query: 542 FRTWAFCESFHSS 580
RTWAFCE+FHS+
Sbjct: 531 LRTWAFCEAFHSA 543
[2][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 322 bits (826), Expect = 1e-86
Identities = 152/193 (78%), Positives = 169/193 (87%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSVFNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TL
Sbjct: 351 VNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITL 410
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
AEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP
Sbjct: 411 AEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPD 470
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL Q
Sbjct: 471 KSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQ 530
Query: 542 FRTWAFCESFHSS 580
FRTWAFCE+FHS+
Sbjct: 531 FRTWAFCEAFHSA 543
[3][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 322 bits (826), Expect = 1e-86
Identities = 155/193 (80%), Positives = 169/193 (87%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TL
Sbjct: 1793 VNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITL 1852
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
AEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP
Sbjct: 1853 AEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPD 1912
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q
Sbjct: 1913 KSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQ 1972
Query: 542 FRTWAFCESFHSS 580
RTWAFCE+FHS+
Sbjct: 1973 LRTWAFCEAFHSA 1985
[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 322 bits (826), Expect = 1e-86
Identities = 152/193 (78%), Positives = 169/193 (87%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSVFNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TL
Sbjct: 1791 VNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITL 1850
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
AEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP
Sbjct: 1851 AEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPD 1910
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL Q
Sbjct: 1911 KSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQ 1970
Query: 542 FRTWAFCESFHSS 580
FRTWAFCE+FHS+
Sbjct: 1971 FRTWAFCEAFHSA 1983
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 288 bits (736), Expect = 3e-76
Identities = 139/194 (71%), Positives = 164/194 (84%), Gaps = 1/194 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTL
Sbjct: 349 MNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTL 408
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTP 358
AEK++KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP
Sbjct: 409 AEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTP 468
Query: 359 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 538
K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VD
Sbjct: 469 QKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVD 528
Query: 539 QFRTWAFCESFHSS 580
QFRTWAFCE+FHS+
Sbjct: 529 QFRTWAFCEAFHSA 542
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 288 bits (736), Expect = 3e-76
Identities = 139/194 (71%), Positives = 164/194 (84%), Gaps = 1/194 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTL
Sbjct: 1775 MNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTL 1834
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTP 358
AEK++KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP
Sbjct: 1835 AEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTP 1894
Query: 359 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 538
K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VD
Sbjct: 1895 QKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVD 1954
Query: 539 QFRTWAFCESFHSS 580
QFRTWAFCE+FHS+
Sbjct: 1955 QFRTWAFCEAFHSA 1968
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 199 bits (506), Expect = 1e-49
Identities = 104/193 (53%), Positives = 132/193 (68%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NSVFNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL
Sbjct: 359 INSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETL 418
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
+K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP
Sbjct: 419 KKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPH 478
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
K Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L
Sbjct: 479 PQKMPKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAG 537
Query: 542 FRTWAFCESFHSS 580
+ TWA E+FH S
Sbjct: 538 YYTWADREAFHMS 550
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 199 bits (506), Expect = 1e-49
Identities = 104/193 (53%), Positives = 132/193 (68%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NSVFNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL
Sbjct: 1849 INSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETL 1908
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
+K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP
Sbjct: 1909 KKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPH 1968
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
K Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L
Sbjct: 1969 PQKMPKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAG 2027
Query: 542 FRTWAFCESFHSS 580
+ TWA E+FH S
Sbjct: 2028 YYTWADREAFHMS 2040
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 171 bits (433), Expect = 4e-41
Identities = 90/191 (47%), Positives = 116/191 (60%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LIRY YR P+P F Q VCLIVYGDDNLISV P +FNG+ I+ L
Sbjct: 626 INSLFNEMLIRYVYRVTVPRPLVNNFNQEVCLIVYGDDNLISVKPDTMKYFNGDRIKEVL 685
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AIFSSLY++ P
Sbjct: 686 AKFKVTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP- 744
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ + + L LN VAL ELYLHND ++F VR+F+V ++
Sbjct: 745 ---------------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLN 789
Query: 542 FRTWAFCESFH 574
W C +FH
Sbjct: 790 LPQWRHCAAFH 800
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 171 bits (432), Expect = 5e-41
Identities = 89/191 (46%), Positives = 118/191 (61%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ L
Sbjct: 352 INSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTIL 411
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 412 AKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP- 470
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 471 ---------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLS 515
Query: 542 FRTWAFCESFH 574
W C SFH
Sbjct: 516 LPQWRHCASFH 526
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 171 bits (432), Expect = 5e-41
Identities = 89/191 (46%), Positives = 118/191 (61%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ L
Sbjct: 626 INSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTIL 685
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 686 AKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP- 744
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 745 ---------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLS 789
Query: 542 FRTWAFCESFH 574
W C SFH
Sbjct: 790 LPQWRHCASFH 800
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 171 bits (432), Expect = 5e-41
Identities = 89/191 (46%), Positives = 118/191 (61%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ L
Sbjct: 1838 INSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTIL 1897
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 1898 AKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP- 1956
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 1957 ---------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLS 2001
Query: 542 FRTWAFCESFH 574
W C SFH
Sbjct: 2002 LPQWRHCASFH 2012
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 170 bits (431), Expect = 6e-41
Identities = 89/191 (46%), Positives = 116/191 (60%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ L
Sbjct: 626 INSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTIL 685
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 686 ARYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP- 744
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ +++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 745 ---------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLS 789
Query: 542 FRTWAFCESFH 574
W C SFH
Sbjct: 790 LPQWRHCASFH 800
[14][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 169 bits (429), Expect = 1e-40
Identities = 89/191 (46%), Positives = 116/191 (60%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ L
Sbjct: 626 INSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTIL 685
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 686 ANIKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP- 744
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ +++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 745 ---------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLS 789
Query: 542 FRTWAFCESFH 574
W C SFH
Sbjct: 790 LPQWRHCASFH 800
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 166 bits (419), Expect = 2e-39
Identities = 86/191 (45%), Positives = 116/191 (60%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+LI Y YR P+ F+Q VCLIVYGDDNLIS+ P +FNGE I+ TL
Sbjct: 352 INSLFNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKSTL 411
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ ++ ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 412 AKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP- 470
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
+ +++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 471 ---------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLN 515
Query: 542 FRTWAFCESFH 574
W C SFH
Sbjct: 516 LPQWRHCASFH 526
[16][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 158 bits (400), Expect = 3e-37
Identities = 87/176 (49%), Positives = 109/176 (61%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NSVFNEILIRY Y+ + P PE RF+ V L+VYGDDNLI+V PS F GE I+ TL
Sbjct: 1850 LNSVFNEILIRYVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTL 1909
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A KK+ ITDGSDK +P +E KP +LDFLKR FL D+G + LD T I+SSL +L
Sbjct: 1910 ARKKITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR-- 1967
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
S + D I L NV AL ELY D +EF +R+F++ RLP+
Sbjct: 1968 -------------SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPM 2010
[17][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 152 bits (385), Expect = 1e-35
Identities = 83/193 (43%), Positives = 113/193 (58%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNEIL+R Y+ + P + F + V L+VYGDDNLI+V PS FNG+ I+ T+
Sbjct: 1547 LNSIFNEILVRMVYKTVVPGVPRNHFNEYVTLLVYGDDNLIAVDPSILEVFNGDVIKKTM 1606
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ +V ITDGSDK +PT+ KP LDFLKR F D G + APLD TAI+SSL+W+
Sbjct: 1607 AKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGR 1666
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 541
DV+ L N AL+E++ H D EF +RSF+V+++P D
Sbjct: 1667 GQ---------------DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD- 1710
Query: 542 FRTWAFCESFHSS 580
TW FH +
Sbjct: 1711 LPTWDQARCFHEA 1723
[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 144 bits (363), Expect = 5e-33
Identities = 78/192 (40%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+F E+L+RY ++K+ P K F + V LI YGDDN+ +VA S +F G+A+++ +
Sbjct: 1802 LNSIFKELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDALKMQM 1861
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ V ITDG DK TI +P EL+FLKR F++ G+I APL+ +I SSL ++
Sbjct: 1862 AKLGVTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR-- 1919
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVD 538
S D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP
Sbjct: 1920 -------------SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYK 1966
Query: 539 QFRTWAFCESFH 574
+ TW ESFH
Sbjct: 1967 ELTTWFQAESFH 1978
[19][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 138 bits (348), Expect = 3e-31
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +
Sbjct: 342 INSIFNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEM 401
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 402 ANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR-- 459
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVD 538
S D++++LV NVN AL+ELYLH D + + VR F++ +LP
Sbjct: 460 -------------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYK 506
Query: 539 QFRTWAFCESFH 574
+ TW + FH
Sbjct: 507 ELTTWYEAQIFH 518
[20][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 138 bits (348), Expect = 3e-31
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +
Sbjct: 1801 INSIFNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEM 1860
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 1861 ANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR-- 1918
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVD 538
S D++++LV NVN AL+ELYLH D + + VR F++ +LP
Sbjct: 1919 -------------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYK 1965
Query: 539 QFRTWAFCESFH 574
+ TW + FH
Sbjct: 1966 ELTTWYEAQIFH 1977
[21][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 137 bits (345), Expect = 6e-31
Identities = 75/192 (39%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE+L+RY ++K+ P + F + V LI YGDDN+ +V+ S F G+A++ +
Sbjct: 1803 INSIFNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEM 1862
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A V ITDG DK TI +P EL+FLKR K + G+I APL+ +I SSL ++
Sbjct: 1863 ANVGVTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR-- 1920
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVD 538
S D++++LV NVN AL+EL+LH D + F VR+F++ +LP
Sbjct: 1921 -------------SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYK 1967
Query: 539 QFRTWAFCESFH 574
+ TW ++FH
Sbjct: 1968 ELTTWYQAQTFH 1979
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 134 bits (337), Expect = 5e-30
Identities = 75/170 (44%), Positives = 99/170 (58%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR L
Sbjct: 343 LNSIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRL 402
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T
Sbjct: 403 ADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMG 462
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 511
H L NV+ AL+ELYLH + F +R F+
Sbjct: 463 AGSIHI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY 497
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 134 bits (337), Expect = 5e-30
Identities = 75/170 (44%), Positives = 99/170 (58%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR L
Sbjct: 1730 LNSIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRL 1789
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A+ V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T
Sbjct: 1790 ADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMG 1849
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 511
H L NV+ AL+ELYLH + F +R F+
Sbjct: 1850 AGSIHI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY 1884
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 121 bits (304), Expect = 3e-26
Identities = 69/176 (39%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+FNEILIRY YRK+ P P F + V L+VYGDDNL+++ +F+G I+ +
Sbjct: 1781 INSIFNEILIRYVYRKVTPAPACNFFNKYVRLMVYGDDNLLTIKEEVIPFFDGPVIKREM 1840
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 361
A + ITDG+DK + T+E KP L+FLKR F + G++ APLD T++++ L++L +
Sbjct: 1841 ASVGITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTSMYTRLFYLPLA 1900
Query: 362 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVRSFFVARLP 526
F + NV L E+ LH N +EF RVR+F+V++ P
Sbjct: 1901 LMAFIPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRNFYVSKAP 1943
[25][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 111 bits (277), Expect = 5e-23
Identities = 53/68 (77%), Positives = 61/68 (89%)
Frame = +2
Query: 17 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 196
+EILIRYAY+KLAPKP++ F +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+
Sbjct: 9 HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68
Query: 197 KITDGSDK 220
KITDGSDK
Sbjct: 69 KITDGSDK 76
[26][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 110 bits (276), Expect = 6e-23
Identities = 53/64 (82%), Positives = 58/64 (90%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TL
Sbjct: 9 VNSVFNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITL 68
Query: 182 AEKK 193
AEKK
Sbjct: 69 AEKK 72
[27][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 105 bits (263), Expect = 2e-21
Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLA 184
NS+FNEIL+R AYR L P E+ F V LIVYGDDN++ + P+ S FNG I+ +
Sbjct: 1907 NSIFNEILVRCAYRSLVPDIERPFFSNNVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMK 1966
Query: 185 EK-KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTP 358
E+ +KITDG+DK +P I+ +P + +FLKR + K G+ +APL T+IFS L ++
Sbjct: 1967 EELGIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIFSCLRYV-- 2024
Query: 359 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 538
+ Y + +++ NV +L E LH R+ F P V+
Sbjct: 2025 ---------RLQNYDWQAPLLQ----NVQGSLYEASLHGPEMH-DRIYKHFAMHFPKWVE 2070
Query: 539 QFRTWAF 559
+ + +
Sbjct: 2071 EHELYTY 2077
[28][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 105 bits (261), Expect = 3e-21
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 5/162 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ A+ FNG +
Sbjct: 1498 NSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVANVFNGRTL 1557
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ +A+ V ITDG DK +PT+E + DFLKR F KL+ V +P + +++++ L++
Sbjct: 1558 KAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEKSSLWAQLHY 1616
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 475
+ + +D E ++N+N L ELY+H+
Sbjct: 1617 VNTT---------------SLDKQEAYLVNLNNVLKELYMHS 1643
[29][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 104 bits (260), Expect = 4e-21
Identities = 66/187 (35%), Positives = 101/187 (54%), Gaps = 2/187 (1%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLA 184
NS+FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+ S FNG AI+ +
Sbjct: 1908 NSIFNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMK 1967
Query: 185 EK-KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTP 358
E+ +KITDG+DK +P I +P + +FLKR + K G+ +APL T+I+S L ++
Sbjct: 1968 EELGIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYV-- 2025
Query: 359 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 538
+ Y + +++ NV +L E LH R+ F P V+
Sbjct: 2026 ---------RLQNYDWQAPLLQ----NVQGSLYEASLHGPDMH-ARIYKHFATHFPKWVE 2071
Query: 539 QFRTWAF 559
+ + +
Sbjct: 2072 EHELYTY 2078
[30][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 103 bits (257), Expect = 1e-20
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 5/162 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG +
Sbjct: 351 NSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTL 410
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L++
Sbjct: 411 KAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHY 469
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 475
+ + +D E ++N+N L ELY+++
Sbjct: 470 VNTT---------------NLDKQEAYLVNLNNVLKELYMYS 496
[31][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 103 bits (257), Expect = 1e-20
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 5/162 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG +
Sbjct: 1498 NSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTL 1557
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L++
Sbjct: 1558 KAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHY 1616
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 475
+ + +D E ++N+N L ELY+++
Sbjct: 1617 VNTT---------------NLDKQEAYLVNLNNVLKELYMYS 1643
[32][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 98.2 bits (243), Expect = 4e-19
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G +
Sbjct: 1491 NSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKL 1550
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++
Sbjct: 1551 KSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHY 1610
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
++ +++ E ++N+ L ELYLH+ +E +++R ++R+
Sbjct: 1611 VS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEW 1654
Query: 530 LVD-QFRTWAFCESFHS 577
L T A E FHS
Sbjct: 1655 LQKADVPTIAQIEEFHS 1671
[33][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 97.4 bits (241), Expect = 7e-19
Identities = 62/182 (34%), Positives = 100/182 (54%), Gaps = 5/182 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPK----PEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEA 166
+N +FNE+L+RY ++K+ + P +C F + +VYGDDNLISV+P FNG+
Sbjct: 374 MNGIFNELLVRYCFKKIMREGGATPLECSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKL 433
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 346
++ +A V ITDG DK PT+E +P + DFLKR F++ V AP + +++++ L+
Sbjct: 434 LKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWDAPEERSSLYTQLH 493
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLP 526
+++ Y+G + VNV + ELY+H+ KE +R + LP
Sbjct: 494 YVSTKMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKEASDLRRKALRDLP 537
Query: 527 LL 532
L
Sbjct: 538 WL 539
[34][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 97.1 bits (240), Expect = 9e-19
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G +
Sbjct: 1491 NSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKL 1550
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++
Sbjct: 1551 KSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHY 1610
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
++ +++ E ++N+ L ELYLH+ + Q +R ++R+
Sbjct: 1611 VS---------------CNNLEMQEAYLVNLVNVLRELYLHSPEEACQ-LRRRALSRIEW 1654
Query: 530 LVD-QFRTWAFCESFHS 577
L T A E FHS
Sbjct: 1655 LQKADVPTIAQIEEFHS 1671
[35][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 96.7 bits (239), Expect = 1e-18
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G +
Sbjct: 350 NSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKL 409
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++
Sbjct: 410 KSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHY 469
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
++ +++ E ++N+ L ELYLH+ +E +R+R ++ +
Sbjct: 470 VS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEW 513
Query: 530 LVD-QFRTWAFCESFHS 577
L T A E FHS
Sbjct: 514 LQKADVPTIAQIEEFHS 530
[36][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 96.7 bits (239), Expect = 1e-18
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+LIRY+Y KL AP F+ V L VYGDDNLISV +F+G +
Sbjct: 1491 NSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNLISVHEYVKPYFSGSKL 1550
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L++
Sbjct: 1551 KSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHY 1610
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
++ +++ E ++N+ L ELYLH+ +E +++R ++R+
Sbjct: 1611 VS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEW 1654
Query: 530 LVD-QFRTWAFCESFHS 577
L T A E FHS
Sbjct: 1655 LQKADVPTIAQIEEFHS 1671
[37][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 96.7 bits (239), Expect = 1e-18
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G +
Sbjct: 1490 NSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKL 1549
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++
Sbjct: 1550 KSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHY 1609
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
++ +++ E ++N+ L ELYLH+ +E +R+R ++ +
Sbjct: 1610 VS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEW 1653
Query: 530 LVD-QFRTWAFCESFHS 577
L T A E FHS
Sbjct: 1654 LQKADVPTIAQIEEFHS 1670
[38][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 95.1 bits (235), Expect = 3e-18
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+LIRY+Y KL AP F+ V L VYGDDN ISV +F+G +
Sbjct: 1491 NSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNFISVHEYVKPYFSGSKL 1550
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L++
Sbjct: 1551 KSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHY 1610
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
++ +++ E ++N+ L ELYLH+ +E +++R ++R+
Sbjct: 1611 VS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEW 1654
Query: 530 LVD-QFRTWAFCESFHS 577
L T A E FHS
Sbjct: 1655 LQKADVPTIAQIEEFHS 1671
[39][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 94.7 bits (234), Expect = 5e-18
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEA 166
VNS+FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+
Sbjct: 349 VNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKK 408
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 346
++ +LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+
Sbjct: 409 LKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLH 468
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 496
++ + +K Y + NV L ELY+H+ ++ EF+R
Sbjct: 469 YV-----NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 505
[40][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 94.7 bits (234), Expect = 5e-18
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 7/172 (4%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEA 166
VNS+FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+
Sbjct: 1504 VNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKK 1563
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 346
++ +LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+
Sbjct: 1564 LKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLH 1623
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 496
++ + +K Y + NV L ELY+H+ ++ EF+R
Sbjct: 1624 YV-----NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 1660
[41][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 89.7 bits (221), Expect = 1e-16
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 2/179 (1%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE +
Sbjct: 1498 VNSILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVD 1557
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +TDG DK I + + DFLKR F L G P+ +++ L+++
Sbjct: 1558 FFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVR 1617
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 532
K +++ + V N+N L EL+LH S+E +R V L L
Sbjct: 1618 AKK---------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTLKWL 1660
[42][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 89.4 bits (220), Expect = 2e-16
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 2/176 (1%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE +
Sbjct: 313 VNSILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVD 372
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +TDG DK I + + DFLKR F L G P+ +++ L+++
Sbjct: 373 FFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVR 432
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARL 523
K +++ + V N+N L EL+LH S+E +R V L
Sbjct: 433 AKK---------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTL 472
[43][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 88.2 bits (217), Expect = 4e-16
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G +
Sbjct: 351 NSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKL 410
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ +A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L++
Sbjct: 411 KQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHY 470
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+ + + + + + V+V+ EL ++ ++E
Sbjct: 471 VNVN----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 503
[44][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 88.2 bits (217), Expect = 4e-16
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G +
Sbjct: 1502 NSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKL 1561
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ +A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L++
Sbjct: 1562 KQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHY 1621
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+ + + + + + V+V+ EL ++ ++E
Sbjct: 1622 VNVN----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 1654
[45][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 86.7 bits (213), Expect = 1e-15
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ +
Sbjct: 152 NSIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRL 211
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+
Sbjct: 212 KEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLH 271
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVA 517
++ + + H K + V+V+ EL + N AL + K QRV +
Sbjct: 272 YINVTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPS 320
Query: 518 RLPLLVDQFRTWAFC 562
LP + +A C
Sbjct: 321 DLPTVAQIEEWYATC 335
[46][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 86.7 bits (213), Expect = 1e-15
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ +
Sbjct: 1496 NSIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRL 1555
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+
Sbjct: 1556 KEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLH 1615
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVA 517
++ + + H K + V+V+ EL + N AL + K QRV +
Sbjct: 1616 YINVTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPS 1664
Query: 518 RLPLLVDQFRTWAFC 562
LP + +A C
Sbjct: 1665 DLPTVAQIEEWYATC 1679
[47][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 86.7 bits (213), Expect = 1e-15
Identities = 62/195 (31%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ +
Sbjct: 1499 NSIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRL 1558
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+
Sbjct: 1559 KEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLH 1618
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVA 517
++ + + H K + V+V+ EL + N AL + K QRV +
Sbjct: 1619 YINVTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPS 1667
Query: 518 RLPLLVDQFRTWAFC 562
LP + +A C
Sbjct: 1668 DLPTVAQIEEWYATC 1682
[48][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 85.9 bits (211), Expect = 2e-15
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YA+R R F V L+VYGDDNLISV+ + ++ FNGE +
Sbjct: 1498 VNSILNEILVKYAFRMCFADNPMVRESFDTHVSLVVYGDDNLISVSDAISAKFNGEFLVD 1557
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ + +TDG DK I + + DFLKR F L G P+ +++ L+++
Sbjct: 1558 FFLKLSITVTDGVDKTKKGISFRRLADCDFLKRGFKNLPDGEWIGPMSRESLWPQLHFVR 1617
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH--NDSKEFQR 496
K +++ + V N+N L EL+LH N++ E +R
Sbjct: 1618 AKK---------------LEMADAYVANLNNILRELWLHSANEATELRR 1651
[49][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 84.7 bits (208), Expect = 5e-15
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 347 VNSILNEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVK 406
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G + P+ +++ L+++
Sbjct: 407 FMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVK 466
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 467 AKK---------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 499
[50][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 84.7 bits (208), Expect = 5e-15
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 1519 VNSILNEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVK 1578
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G + P+ +++ L+++
Sbjct: 1579 FMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVK 1638
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1639 AKK---------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 1671
[51][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 84.0 bits (206), Expect = 8e-15
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 349 VNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS 408
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 409 FMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 468
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 469 AKK---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 501
[52][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 84.0 bits (206), Expect = 8e-15
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 1520 VNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS 1579
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1580 FMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 1639
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1640 AKK---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[53][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 84.0 bits (206), Expect = 8e-15
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 1419 VNSILNEILVKYAYWHCFEDNPNVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS 1478
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1479 FMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 1538
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1539 AKK---------------LEMAEAYINNCNNILRELWLHDVREAKEFR 1571
[54][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 84.0 bits (206), Expect = 8e-15
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 1520 VNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS 1579
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1580 FMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 1639
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1640 AKK---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[55][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 84.0 bits (206), Expect = 8e-15
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ +
Sbjct: 1499 NSIFNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRL 1558
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L+
Sbjct: 1559 KEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLH 1618
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVA 517
++ + + H K + V+V+ EL +N AL + K QRV +
Sbjct: 1619 YINVTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPS 1667
Query: 518 RLPLLVDQFRTWAFC 562
LP + + +A C
Sbjct: 1668 DLPTVAQIEKWYASC 1682
[56][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 84.0 bits (206), Expect = 8e-15
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 244 VNSILNEILVKYAYWHCFGDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS 303
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 304 FMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 363
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 364 AKK---------------LEMAEAYINNCNNILCELWLHDVKEAKEFR 396
[57][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 84.0 bits (206), Expect = 8e-15
Identities = 61/195 (31%), Positives = 102/195 (52%), Gaps = 9/195 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ +
Sbjct: 351 NSIFNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRL 410
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L+
Sbjct: 411 KEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLH 470
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVA 517
++ + + H K + V+V+ EL +N AL + K QRV +
Sbjct: 471 YINVTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPS 519
Query: 518 RLPLLVDQFRTWAFC 562
LP + + +A C
Sbjct: 520 DLPTVAQIEKWYASC 534
[58][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 83.6 bits (205), Expect = 1e-14
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 2/170 (1%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 1520 VNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVS 1579
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1580 FMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 1639
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 505
K +++ E + N N L EL+LH D KE + R+
Sbjct: 1640 AKK---------------LEMAEAYINNCNNILRELWLH-DVKEAEEFRN 1673
[59][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 83.6 bits (205), Expect = 1e-14
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ +
Sbjct: 353 NSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRL 412
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA ++ ITDG DK +P ++ + + DFLKR F LYW
Sbjct: 413 KEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYW 456
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
P + + Q + ++ E N+ L EL++ D KE +R + R+
Sbjct: 457 DAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISW 515
Query: 530 LV-DQFRTWAFCESFHS 577
LV +T A E++++
Sbjct: 516 LVPSDLQTVAQIEAWYA 532
[60][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 83.6 bits (205), Expect = 1e-14
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ +
Sbjct: 1497 NSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRL 1556
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ LA ++ ITDG DK +P ++ + + DFLKR F LYW
Sbjct: 1557 KEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYW 1600
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 529
P + + Q + ++ E N+ L EL++ D KE +R + R+
Sbjct: 1601 DAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISW 1659
Query: 530 LV-DQFRTWAFCESFHS 577
LV +T A E++++
Sbjct: 1660 LVPSDLQTVAQIEAWYA 1676
[61][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 82.8 bits (203), Expect = 2e-14
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG +
Sbjct: 349 VNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVN 408
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + + DFLKRKF + G + ++ L+++
Sbjct: 409 FMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVK 468
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 484
K V++ E + N N L EL+L + K
Sbjct: 469 AKK---------------VEMSEAYISNCNNILRELWLGSPEK 496
[62][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 82.8 bits (203), Expect = 2e-14
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G +
Sbjct: 349 NSIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKL 408
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ L + ITDG DK +P + + + DFLKR F K V P + ++++ L++
Sbjct: 409 KEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHY 468
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVR 502
+T + + H E ++NV + ELYLH D +E +R
Sbjct: 469 VTTNNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELR 503
[63][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 82.8 bits (203), Expect = 2e-14
Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 4/168 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKP-EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 1519 VNSILNEILVKYAYWHCFVDNPIVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVK 1578
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1579 FMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKLNPDGTWRSPMSKESLWPQLHYVK 1638
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1639 AKK---------------LEMAEAYINNCNNILRELWLHDVIEAKEFR 1671
[64][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 82.8 bits (203), Expect = 2e-14
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG +
Sbjct: 1492 VNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVN 1551
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + + DFLKRKF + G + ++ L+++
Sbjct: 1552 FMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVK 1611
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 484
K V++ E + N N L EL+L + K
Sbjct: 1612 AKK---------------VEMSEAYISNCNNILRELWLGSPEK 1639
[65][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 82.8 bits (203), Expect = 2e-14
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 5/171 (2%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G +
Sbjct: 1495 NSIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKL 1554
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 349
+ L + ITDG DK +P + + + DFLKR F K V P + ++++ L++
Sbjct: 1555 KEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHY 1614
Query: 350 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVR 502
+T + + H E ++NV + ELYLH D +E +R
Sbjct: 1615 VTTNNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELR 1649
[66][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 82.0 bits (201), Expect = 3e-14
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Frame = +2
Query: 2 VNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G +
Sbjct: 125 VNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVS 184
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 185 FMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVK 244
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEF 490
K +++ E + N N L EL+LH+ ++K+F
Sbjct: 245 AKK---------------LEMAEAYINNCNNILRELWLHDVKEAKDF 276
[67][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 81.6 bits (200), Expect = 4e-14
Identities = 56/163 (34%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 175
VNS+ NEILI+YAY K R F V + VYGDDNLISV+ + +S FNG +
Sbjct: 1492 VNSILNEILIKYAYWKCFETESLIRDHFDTHVAMAVYGDDNLISVSEAISSRFNGNFLVN 1551
Query: 176 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 355
+A +K+TDG DK IE + DFLKR+F + G + ++ L+++
Sbjct: 1552 FMANLGIKVTDGVDKTKIGIEFRTIENCDFLKRRFKENTDGTWSGVMAEEHLWPQLHFVK 1611
Query: 356 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 484
K V++ E + N N L EL+L + K
Sbjct: 1612 AKK---------------VEMSEAYISNCNNILRELWLEDPGK 1639
[68][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 80.1 bits (196), Expect = 1e-13
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ +
Sbjct: 1497 NSIFNEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRL 1556
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA + ITDG DK +P ++ + + DFLKR F + G+ AP D ++++ L+
Sbjct: 1557 KDFLATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF--KNRGLYWDAPEDKESLWAQLH 1614
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVL 436
++ + + H K + V V+ EL +
Sbjct: 1615 YVNANNLEKHEAYKTNL----VTVLRELFM 1640
[69][TOP]
>UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic
stunt virus RepID=B4ZF30_CNSV
Length = 73
Score = 79.7 bits (195), Expect = 2e-13
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NSV NEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL
Sbjct: 1 INSVLNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETL 60
Query: 182 AEKKVKITDGSDK 220
+K V ITDGSDK
Sbjct: 61 KKKNVTITDGSDK 73
[70][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 77.8 bits (190), Expect = 6e-13
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 6/150 (4%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS+FNEILIRY+++ + P F + V ++VYGDDNL+SV +F+G+ +
Sbjct: 1497 NSIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKRL 1556
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLY 346
+ LA + ITDG DK +P ++ + + DFLKR F + G+ AP + ++++ L+
Sbjct: 1557 KEFLATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF--KNRGLYWDAPEEKESLWAQLH 1614
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVL 436
++ + + H K + V V+ EL +
Sbjct: 1615 YVNANNLEKHEAYKTNL----VTVLRELFM 1640
[71][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Frame = +2
Query: 5 NSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 178
NS+ NEIL++YAY P + F V + YGDDNLISV+ + +S F+G +
Sbjct: 1521 NSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMEEYGDDNLISVSDAISSKFDGSFLVSF 1580
Query: 179 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 358
+ +K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1581 IEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKA 1640
Query: 359 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 493
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1641 KK---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[72][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 70.9 bits (172), Expect = 7e-11
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 9/131 (6%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKP------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
VNS+ NE +R+A++++ + + V VYGDDNL+SV+ +S +N
Sbjct: 452 VNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVHFAVYGDDNLVSVSDKYSSLYNLV 511
Query: 164 AIRVTLAEKKVKITDG---SDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIF 334
+I L E+ V + +G ++D P P P DFLKR+F+ +G + APLD +++
Sbjct: 512 SISSFLRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFLKRRFVLGSSGRVLAPLDKSSLL 570
Query: 335 SSLYWLTPSKD 367
+W+ S+D
Sbjct: 571 GCAHWVRKSQD 581
[73][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
RepID=Q9IJX4_CRPV
Length = 1771
Score = 69.7 bits (169), Expect = 2e-10
Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Frame = +2
Query: 2 VNSVFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEA 166
+N ++N +++R + RKLAP+ + + F++ V +I YGDDN ++++ WFN
Sbjct: 1579 INCLYNSMIMRIVWILLARKLAPEMQSMKKFRENVSMISYGDDNCLNISDRVVEWFNQIT 1638
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFS 337
I + E K + TD K ++ E+ FLK++F+ +L V APL I+
Sbjct: 1639 ISEQMKEIKHEYTD-EGKTGDMVKFPSLSEIHFLKKRFVFSHQLQRTV--APLQKDVIYE 1695
Query: 338 SLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 505
L W +D E L++N+N A E+ H S E+Q++RS
Sbjct: 1696 MLNWT----------------RNTIDPNEILMMNINTAFREIVYHGKS-EYQKLRS 1734
[74][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
RepID=UPI000043F357
Length = 707
Score = 69.3 bits (168), Expect = 2e-10
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGE 163
VNS+ N I ++Y KL + E F+Q V YGDDNL+SV FN
Sbjct: 357 VNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLV 416
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSS 340
I LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I
Sbjct: 417 KIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITER 475
Query: 341 LYWL 352
L+W+
Sbjct: 476 LHWI 479
[75][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
Length = 2250
Score = 69.3 bits (168), Expect = 2e-10
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGE 163
VNS+ N I ++Y KL + E F+Q V YGDDNL+SV FN
Sbjct: 1900 VNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLV 1959
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSS 340
I LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I
Sbjct: 1960 KIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITER 2018
Query: 341 LYWL 352
L+W+
Sbjct: 2019 LHWI 2022
[76][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
Length = 2235
Score = 69.3 bits (168), Expect = 2e-10
Identities = 46/124 (37%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGE 163
VNS+ N I ++Y KL + E F+Q V YGDDNL+SV FN
Sbjct: 1885 VNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITERFNLV 1944
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSS 340
I LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I
Sbjct: 1945 KIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITER 2003
Query: 341 LYWL 352
L+W+
Sbjct: 2004 LHWI 2007
[77][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
RepID=Q769F2_SDV
Length = 374
Score = 68.2 bits (165), Expect = 5e-10
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
+NSV NE +++++ + A + C F + + VYGDDN +SVA AS +N +
Sbjct: 47 LNSVVNEFYLKWSWMGIMREAGYAKEASLCAFHEATEISVYGDDNFVSVATPVASLYNLK 106
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFL-KLDTGVIQAPLDMTAIFS 337
I L+ VK+ DG+ + TI+P P E+DFLKRKF+ + I PL+ +I
Sbjct: 107 TISEFLSRVGVKLGDGA--KSGTIKPFIPLEEVDFLKRKFVADSKSTAILCPLNKRSIEE 164
Query: 338 SLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 472
L+++ G D I L LN+ AL E + H
Sbjct: 165 RLFYV----------------RGGQDEIAALELNIATALCEAFFH 193
[78][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 67.8 bits (164), Expect = 6e-10
Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
VNS+ N + +AY KL + + K F+ V VYGDDNLISV + FN
Sbjct: 357 VNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLV 416
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSS 340
I L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I
Sbjct: 417 TISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITER 475
Query: 341 LYWL 352
L+W+
Sbjct: 476 LHWV 479
[79][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 67.8 bits (164), Expect = 6e-10
Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
VNS+ N + +AY KL + + K F+ V VYGDDNLISV + FN
Sbjct: 1727 VNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLV 1786
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSS 340
I L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I
Sbjct: 1787 TISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITER 1845
Query: 341 LYWL 352
L+W+
Sbjct: 1846 LHWV 1849
[80][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 66.6 bits (161), Expect = 1e-09
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNG 160
NS+ NE +RYA+ L +P K + + VYGDDNL++V P W+
Sbjct: 1454 NSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELQWYTL 1512
Query: 161 EAIRVTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIF 334
AI L V I +G DK+ K EL FL R F + G +QAPL +I
Sbjct: 1513 PAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSII 1572
Query: 335 SSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+YW+ PS + T + + + G V E+LV +V AL E
Sbjct: 1573 EPMYWIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622
[81][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 66.2 bits (160), Expect = 2e-09
Identities = 55/171 (32%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNG 160
NS+ NE +RYA+ L +P K + + VYGDDNL++V P W+
Sbjct: 1454 NSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELHWYTL 1512
Query: 161 EAIRVTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIF 334
AI L V I +G DK+ K EL FL R F + G +QAPL +I
Sbjct: 1513 PAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSII 1572
Query: 335 SSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+YW+ PS + T + + + G V E+LV +V AL E
Sbjct: 1573 EPMYWIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622
[82][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
RepID=A7KCA2_9VIRU
Length = 1614
Score = 62.8 bits (151), Expect = 2e-08
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+ N + +RY Y L P+ F+ V L+ YGDDN++SV+ C WFN +I T
Sbjct: 1297 LNSIVNSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC-DWFNHTSISETF 1355
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLD-TGVIQAPLDMTAIFSSLYWLTP 358
A + T +DK++ ++ + FLKR + D G APL+ +I SL T
Sbjct: 1356 ATLNIVYT-MADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEEESIEKSLMVWTR 1414
Query: 359 SK 364
SK
Sbjct: 1415 SK 1416
[83][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
Length = 1759
Score = 62.4 bits (150), Expect = 2e-08
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Frame = +2
Query: 2 VNSVFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEA 166
+N ++N I++R ++ K P+ + + F + V LI YGDDN++++ WFN
Sbjct: 1567 INCLYNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQIN 1626
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFS 337
I + E + + TD + K ++ + ++ FLKRKF +L V APL + I+
Sbjct: 1627 ISEVMTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKFRFSPELQRHV--APLKIEVIYE 1683
Query: 338 SLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVA 517
L W S +D E L+ N+ A E+ H +E+ ++RS +A
Sbjct: 1684 MLNWSRRS----------------IDPDEILMSNIETAFREVVYHG-KEEYDKLRSAVLA 1726
[84][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 62.0 bits (149), Expect = 3e-08
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNG 160
NS+ NE +RYA+ L +P K + + VYGDDNL++V P W++
Sbjct: 1457 NSLLNEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGDDNLVAV-PLHLQWYSL 1515
Query: 161 EAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIF 334
I L V I +G DK D ++ + EL FL R F + G APL +I
Sbjct: 1516 PNIAQELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSII 1575
Query: 335 SSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+YW+ P+ + T + + + G+V E+LV +V AL E
Sbjct: 1576 EPMYWIRPAPGCPDAQAMMENVETGIREAFHHGQV-AYEKLVADVQEALNE 1625
[85][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
Length = 2151
Score = 62.0 bits (149), Expect = 3e-08
Identities = 53/172 (30%), Positives = 80/172 (46%), Gaps = 20/172 (11%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFN 157
NS+ NE +RYA+ L +P + F Q + + VYGDDNL++V P W++
Sbjct: 1455 NSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYS 1512
Query: 158 GEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 331
I L V I +G DK D ++ + EL FL R F + G APL +I
Sbjct: 1513 LPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSI 1572
Query: 332 FSSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+YW+ P+ + T + + + G V ++LVL+V AL E
Sbjct: 1573 IEPMYWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVLDVQTALDE 1623
[86][TOP]
>UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic
sadwavirus RepID=A4UVR7_SDV
Length = 319
Score = 62.0 bits (149), Expect = 3e-08
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +2
Query: 71 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KP 247
C F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 21 CAFHEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIP 78
Query: 248 FWELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVI 421
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 79 LEEVDFLKRQFI-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDEL 121
Query: 422 EELVLNVNVALMELYLH 472
L LNV AL E + H
Sbjct: 122 AALELNVATALCEAFFH 138
[87][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
RepID=UPI0000164A61
Length = 694
Score = 61.2 bits (147), Expect = 6e-08
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEA 166
+NSV N+ + +A+RK+ + + R ++ C VYGDDN++S + +N
Sbjct: 352 INSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVT 411
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 346
I L V ++DG K ++ F ELDFLKR+++ PL +AI L+
Sbjct: 412 IAAELKTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLF 470
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 502
W+ S+D +E L N ALME + H D F R R
Sbjct: 471 WVRSSEDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 507
[88][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
Length = 1915
Score = 61.2 bits (147), Expect = 6e-08
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEA 166
+NSV N+ + +A+RK+ + + R ++ C VYGDDN++S + +N
Sbjct: 1573 INSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVT 1632
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 346
I L V ++DG K ++ F ELDFLKR+++ PL +AI L+
Sbjct: 1633 IAAELKTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLF 1691
Query: 347 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 502
W+ S+D +E L N ALME + H D F R R
Sbjct: 1692 WVRSSEDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 1728
[89][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling virus
RepID=Q9YZ97_SDV
Length = 872
Score = 59.7 bits (143), Expect = 2e-07
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
+NS+ NE +++++ L A + F + + +YGDDN +SVA AS +N +
Sbjct: 544 INSIVNEFYLKWSWMGLMKEAGYAKEASLYAFHEATEISLYGDDNFVSVATPVASLYNLK 603
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 343
I L VK+ DG+ K T P E+DFLKR+F+ A TAI
Sbjct: 604 TISEFLRRIGVKLGDGA-KTGITKPFIPLEEVDFLKRQFV--------ADAGSTAI---- 650
Query: 344 YWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQR 496
L P K K ++ G D + L LN+ AL E + H KE+ R
Sbjct: 651 --LCPLK-KISIEERLFYVKGGQDELAALELNMATALCEAFFH--GKEYFR 696
[90][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
Length = 2163
Score = 59.7 bits (143), Expect = 2e-07
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL----APKPEKCRFQQTVCLI-VYGDDNLISVAPSCASWFNGEA 166
+NS+ N+ + +A+RK+ +P R +T C VYGDDN++S + + +N
Sbjct: 1634 INSMVNQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVVSFSLAVRDMYNLCT 1693
Query: 167 IRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTG-VIQAPLDMTAIFSSL 343
I L V ++DG K I+ F +LDFLKR++ +L+ G + PLD AI L
Sbjct: 1694 IADELKTIGVTLSDGK-KTGVLIKWTGFKDLDFLKRRW-ELEPGHGFKCPLDKMAIEERL 1751
Query: 344 YWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 472
+W+ S+D +E L N ALME + H
Sbjct: 1752 FWVRKSEDN----------------MESLDDNCYSALMEAFHH 1778
[91][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
RepID=A0N0G3_9VIRU
Length = 1943
Score = 59.7 bits (143), Expect = 2e-07
Identities = 52/172 (30%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFN 157
NS+ NE +RYA+ L +P + F Q + + VYGDDNL++V P W++
Sbjct: 1247 NSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYS 1304
Query: 158 GEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 331
I L V I +G DK D ++ + EL FL R F + G APL +I
Sbjct: 1305 LPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSI 1364
Query: 332 FSSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 460
+YW+ P+ + T + + + G V ++LV +V AL E
Sbjct: 1365 IEPMYWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVSDVQTALDE 1415
[92][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
RepID=UPI0000164A59
Length = 682
Score = 59.3 bits (142), Expect = 2e-07
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
+NSV NE +++++ L A + F + + +YGDDN +SVA AS +N
Sbjct: 355 INSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVSVATPVASVYNLT 414
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTG--VIQAPLDMTAIF 334
I L VK+ DG+ TI+P P E+DFLKR+F+ D+G I PL +I
Sbjct: 415 TISNFLGRIGVKLGDGA--KTGTIKPFIPLEEVDFLKRQFV-ADSGSTAILCPLKKISIE 471
Query: 335 SSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 472
L+++ G D I L LN+ AL E + H
Sbjct: 472 ERLFYV----------------RGGQDEIAALELNIATALCEAFFH 501
[93][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
Length = 2081
Score = 59.3 bits (142), Expect = 2e-07
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 163
+NSV NE +++++ L A + F + + +YGDDN +SVA AS +N
Sbjct: 1754 INSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVSVATPVASVYNLT 1813
Query: 164 AIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTG--VIQAPLDMTAIF 334
I L VK+ DG+ TI+P P E+DFLKR+F+ D+G I PL +I
Sbjct: 1814 TISNFLGRIGVKLGDGA--KTGTIKPFIPLEEVDFLKRQFV-ADSGSTAILCPLKKISIE 1870
Query: 335 SSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 472
L+++ G D I L LN+ AL E + H
Sbjct: 1871 ERLFYV----------------RGGQDEIAALELNIATALCEAFFH 1900
[94][TOP]
>UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F388_9VIRU
Length = 139
Score = 59.3 bits (142), Expect = 2e-07
Identities = 29/68 (42%), Positives = 42/68 (61%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+ N + +RYAY L PK E F++ V L+ YGDDN++SV+P+ A W+N AI
Sbjct: 68 INSLVNSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWYNHTAIAAAF 126
Query: 182 AEKKVKIT 205
A + T
Sbjct: 127 ATMDITYT 134
[95][TOP]
>UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic
sadwavirus RepID=A4UVR5_SDV
Length = 319
Score = 58.2 bits (139), Expect = 5e-07
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Frame = +2
Query: 77 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 253
F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 23 FYEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIPLE 80
Query: 254 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 427
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 81 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAA 123
Query: 428 LVLNVNVALMELYLH 472
L LNV AL E + H
Sbjct: 124 LELNVATALCEAFFH 138
[96][TOP]
>UniRef100_UPI00004FF342 polymerase n=1 Tax=Strawberry latent ringspot virus
RepID=UPI00004FF342
Length = 675
Score = 56.2 bits (134), Expect = 2e-06
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNS+ N L+R+++ + F V L V GDDNL+SV A FN + + L
Sbjct: 347 VNSLVNHFLVRWSWEHMMAS-SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFL 405
Query: 182 AEKKVKITDGSDKDAPTI-EPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 352
A + DGSDK+ + E P + DFLKR F K APL ++ SL+W+
Sbjct: 406 AGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF-KARGDRYLAPLSWLSLSESLHWV 462
[97][TOP]
>UniRef100_Q5G2U4 250 kDa polyprotein n=1 Tax=Strawberry latent ringspot virus
RepID=Q5G2U4_9SECO
Length = 2227
Score = 56.2 bits (134), Expect = 2e-06
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNS+ N L+R+++ + F V L V GDDNL+SV A FN + + L
Sbjct: 1899 VNSLVNHFLVRWSWEHMMAS-SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFL 1957
Query: 182 AEKKVKITDGSDKDAPTI-EPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 352
A + DGSDK+ + E P + DFLKR F K APL ++ SL+W+
Sbjct: 1958 AGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF-KARGDRYLAPLSWLSLSESLHWV 2014
[98][TOP]
>UniRef100_Q20LA1 Polyprotein 1 (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q20LA1_9SECO
Length = 533
Score = 56.2 bits (134), Expect = 2e-06
Identities = 25/45 (55%), Positives = 33/45 (73%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 139
NS+FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+
Sbjct: 487 NSIFNEILVRCAYRSLVPEIERPFFSNNVALIVYGDDNVMGIHPN 531
[99][TOP]
>UniRef100_B5LPA0 Polyprotein n=1 Tax=Infectious flacherie virus RepID=B5LPA0_9VIRU
Length = 3085
Score = 55.8 bits (133), Expect = 2e-06
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSV N IL+ Y + K+A + F+ T +IV GDD +IS+ F+ I
Sbjct: 2774 VNSVVNLILMNYMWIKIARRRASEFFKLTY-IIVMGDDVVISLPKQLTEEFDCRKICAEF 2832
Query: 182 AEKKVKITDGSDKDAPTIEPKP---FWELDFLKRKFLKLDT--GVIQAPLDMTAIFSSLY 346
A+ +K+TD S+K+ T EPKP F + +FL R F D + AP+ A+F
Sbjct: 2833 AKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYPDITFAPVKTIALFDCPL 2890
Query: 347 WLTPSKDK 370
W++ +D+
Sbjct: 2891 WISKGQDE 2898
[100][TOP]
>UniRef100_B3F389 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F389_9VIRU
Length = 139
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+ N + IRY YR L PK E F+Q V L+ YGDDN++ ++ SWFN +I L
Sbjct: 68 INSLVNSLYIRYCYRMLNPKKEVITFKQNVNLMTYGDDNIMGISDK-ISWFNHTSIADCL 126
Query: 182 AEKKVKIT 205
+ T
Sbjct: 127 GMANIVYT 134
[101][TOP]
>UniRef100_B3F394 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F394_9VIRU
Length = 138
Score = 54.7 bits (130), Expect = 5e-06
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+N + N + +RY Y KL+P+ F++ V ++ YGDDN++ V+ S A WFN ++ TL
Sbjct: 67 INGLANSLYLRYCYAKLSPEANCVNFKRDVAVMTYGDDNIMGVSDS-APWFNHTTLQSTL 125
Query: 182 AE 187
A+
Sbjct: 126 AD 127
[102][TOP]
>UniRef100_Q6WGS3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS3_9PICO
Length = 151
Score = 54.3 bits (129), Expect = 7e-06
Identities = 29/78 (37%), Positives = 47/78 (60%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+ N + +RYAY L+P+ + F+ V L YGDDN+ V+ CA +F I+ L
Sbjct: 67 INSLANSLYMRYAYYVLSPQKDLLTFKHHVALFTYGDDNICGVSIECA-FFTHTGIQAAL 125
Query: 182 AEKKVKITDGSDKDAPTI 235
AE ++ T +DK+A ++
Sbjct: 126 AECGIRYT-MADKEAESV 142
[103][TOP]
>UniRef100_Q0EDJ7 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ7_9VIRU
Length = 297
Score = 54.3 bits (129), Expect = 7e-06
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+N++ N +LIR A+ + P F Q V L+ YGDD +++V+ + FN I
Sbjct: 161 LNTISNCLLIRLAWLGITDLPLS-EFSQNVVLVCYGDDLIMNVSDNMIDXFNAVTIGKFF 219
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQAPLDMTAIFSSLYW 349
++ K++ TD DK T++ + FLK FLK T V A LD ++ + W
Sbjct: 220 SQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFLANLDKVSVEGTTNW 275
[104][TOP]
>UniRef100_Q0EDJ3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ3_9VIRU
Length = 297
Score = 54.3 bits (129), Expect = 7e-06
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+N++ N +LIR A+ + P F Q V L+ YGDD +++V+ + FN I
Sbjct: 161 LNTISNCLLIRLAWLGITDLPLS-EFSQNVVLVCYGDDLIMNVSDNMIDXFNAVTIGKFF 219
Query: 182 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQAPLDMTAIFSSLYW 349
++ K++ TD DK T++ + FLK FLK T V A LD ++ + W
Sbjct: 220 SQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFLANLDKVSVEGTTNW 275
[105][TOP]
>UniRef100_O70710 Polyprotein n=1 Tax=Infectious flacherie virus RepID=O70710_9VIRU
Length = 3085
Score = 54.3 bits (129), Expect = 7e-06
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSV N IL+ Y + K+ + F+ T +IV GDD +IS+ F+ I
Sbjct: 2774 VNSVVNLILMNYMWIKITRRRASEFFKLTY-IIVMGDDVVISLPKQLTEEFDCRKICAEF 2832
Query: 182 AEKKVKITDGSDKDAPTIEPKP---FWELDFLKRKFLKLDT--GVIQAPLDMTAIFSSLY 346
A+ +K+TD S+K+ T EPKP F + +FL R F D + AP+ A+F
Sbjct: 2833 AKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYPDITFAPVKTIALFDCPL 2890
Query: 347 WLTPSKDK 370
W++ +D+
Sbjct: 2891 WISKGQDE 2898
[106][TOP]
>UniRef100_A3RKR2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Infectious
flacherie virus RepID=A3RKR2_9VIRU
Length = 639
Score = 54.3 bits (129), Expect = 7e-06
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
VNSV N IL+ Y + K+ + F+ T +IV GDD +IS+ F+ I
Sbjct: 328 VNSVVNLILMNYMWIKITRRRASEFFKLTY-IIVMGDDVVISLPKQLTEEFDCRKICAEF 386
Query: 182 AEKKVKITDGSDKDAPTIEPKP---FWELDFLKRKFLKLDT--GVIQAPLDMTAIFSSLY 346
A+ +K+TD S+K+ T EPKP F + +FL R F D + AP+ A+F
Sbjct: 387 AKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYPDITFAPVKTIALFDCPL 444
Query: 347 WLTPSKDK 370
W++ +D+
Sbjct: 445 WISKGQDE 452
[107][TOP]
>UniRef100_Q6WGR8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGR8_9PICO
Length = 151
Score = 53.9 bits (128), Expect = 9e-06
Identities = 29/78 (37%), Positives = 46/78 (58%)
Frame = +2
Query: 2 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 181
+NS+ N + +RYAY L P+ + F+ V L YGDDN+ V+ CA +F I+ L
Sbjct: 67 INSLANSLYMRYAYYALNPQKDLLTFKHRVALFTYGDDNICGVSIECA-FFTHTGIQAAL 125
Query: 182 AEKKVKITDGSDKDAPTI 235
AE ++ T +DK+A ++
Sbjct: 126 AECGIRYT-MADKEAESV 142
[108][TOP]
>UniRef100_C1K2M4 Protease/RNA-dependent RNA polymerase (Fragment) n=1 Tax=Nasonia
vitripennis virus RepID=C1K2M4_9VIRU
Length = 787
Score = 53.9 bits (128), Expect = 9e-06
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Frame = +2
Query: 5 NSVFNEILIRYAYRKLAPK-----PEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 169
NS N I IR AY LA K + F+Q V + GDD +++V P SWFN +
Sbjct: 596 NSECNSIYIRCAYLGLARKYAPVLADLYWFKQYVRMFSNGDDLIMAVKPDIISWFNNRTL 655
Query: 170 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT--GVIQAPLDMTAIFSSL 343
++ +K+TD K E E +LKR F K T G APL+ +I +
Sbjct: 656 IDFFSQHNIKMTDAL-KSGKVREFCSLEEATYLKRGFKKHPTRPGEWLAPLERASITDTA 714
Query: 344 YWLTPSKDK 370
W+ S D+
Sbjct: 715 NWIWRSVDR 723