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[1][TOP] >UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08 Length = 824 Score = 319 bits (818), Expect = 8e-86 Identities = 153/191 (80%), Positives = 167/191 (87%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK Sbjct: 355 FNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 414 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF Sbjct: 415 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 474 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 H QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTW Sbjct: 475 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 534 Query: 543 AFCESFHSSQQ 575 AFCE+FHS+QQ Sbjct: 535 AFCEAFHSAQQ 545 [2][TOP] >UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus RepID=UPI0000163E03 Length = 824 Score = 319 bits (818), Expect = 8e-86 Identities = 150/191 (78%), Positives = 167/191 (87%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK Sbjct: 355 FNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 414 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF Sbjct: 415 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 474 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 H Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFRTW Sbjct: 475 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 534 Query: 543 AFCESFHSSQQ 575 AFCE+FHS+QQ Sbjct: 535 AFCEAFHSAQQ 545 [3][TOP] >UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus RepID=POL1_TBRVM Length = 2266 Score = 319 bits (818), Expect = 8e-86 Identities = 153/191 (80%), Positives = 167/191 (87%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK Sbjct: 1797 FNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 1856 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF Sbjct: 1857 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 1916 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 H QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTW Sbjct: 1917 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 1976 Query: 543 AFCESFHSSQQ 575 AFCE+FHS+QQ Sbjct: 1977 AFCEAFHSAQQ 1987 [4][TOP] >UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus RepID=POL1_BRSV Length = 2264 Score = 319 bits (818), Expect = 8e-86 Identities = 150/191 (78%), Positives = 167/191 (87%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK Sbjct: 1795 FNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 1854 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF Sbjct: 1855 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 1914 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 H Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFRTW Sbjct: 1915 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 1974 Query: 543 AFCESFHSSQQ 575 AFCE+FHS+QQ Sbjct: 1975 AFCEAFHSAQQ 1985 [5][TOP] >UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus RepID=UPI00017F0C90 Length = 826 Score = 286 bits (732), Expect = 8e-76 Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 1/192 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAEK+ Sbjct: 353 FNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKR 412 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K K Sbjct: 413 IKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSK 472 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRT 539 F +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRT Sbjct: 473 FALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRT 532 Query: 540 WAFCESFHSSQQ 575 WAFCE+FHS+QQ Sbjct: 533 WAFCEAFHSAQQ 544 [6][TOP] >UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus RepID=POL1_GCMV Length = 2252 Score = 286 bits (732), Expect = 8e-76 Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 1/192 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAEK+ Sbjct: 1779 FNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKR 1838 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K K Sbjct: 1839 IKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSK 1898 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRT 539 F +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRT Sbjct: 1899 FALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRT 1958 Query: 540 WAFCESFHSSQQ 575 WAFCE+FHS+QQ Sbjct: 1959 WAFCEAFHSAQQ 1970 [7][TOP] >UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus RepID=UPI00003FE52F Length = 846 Score = 195 bits (495), Expect = 2e-48 Identities = 102/191 (53%), Positives = 130/191 (68%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +K Sbjct: 363 FNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKN 422 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Sbjct: 423 VTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKM 482 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TW Sbjct: 483 PKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTW 541 Query: 543 AFCESFHSSQQ 575 A E+FH S+Q Sbjct: 542 ADREAFHMSKQ 552 [8][TOP] >UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus RepID=POL1_CNSV Length = 2336 Score = 195 bits (495), Expect = 2e-48 Identities = 102/191 (53%), Positives = 130/191 (68%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +K Sbjct: 1853 FNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKN 1912 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Sbjct: 1913 VTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKM 1972 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TW Sbjct: 1973 PKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTW 2031 Query: 543 AFCESFHSSQQ 575 A E+FH S+Q Sbjct: 2032 ADREAFHMSKQ 2042 [9][TOP] >UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA9_9SECO Length = 985 Score = 167 bits (424), Expect = 4e-40 Identities = 89/190 (46%), Positives = 113/190 (59%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LIRY YR P+P F Q VCLIVYGDDNLISV P +FNG+ I+ LA+ K Sbjct: 630 FNEMLIRYVYRVTVPRPLVNNFNQEVCLIVYGDDNLISVKPDTMKYFNGDRIKEVLAKFK 689 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK++P + KP +LDFLKR F G + APLD+ AIFSSLY++ P Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP----- 744 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + + + L LN VAL ELYLHND ++F VR+F+V ++ W Sbjct: 745 -----------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQW 793 Query: 543 AFCESFHSSQ 572 C +FH Q Sbjct: 794 RHCAAFHDEQ 803 [10][TOP] >UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus RepID=UPI00003FE53F Length = 711 Score = 167 bits (423), Expect = 5e-40 Identities = 88/190 (46%), Positives = 115/190 (60%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+ K Sbjct: 356 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 415 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P Sbjct: 416 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 470 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + ++++ L LN VAL ELYLH D ++F VR+F+V ++ W Sbjct: 471 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 519 Query: 543 AFCESFHSSQ 572 C SFH Q Sbjct: 520 RHCASFHDEQ 529 [11][TOP] >UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA7_9SECO Length = 985 Score = 167 bits (423), Expect = 5e-40 Identities = 88/190 (46%), Positives = 115/190 (60%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+ K Sbjct: 630 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 689 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + ++++ L LN VAL ELYLH D ++F VR+F+V ++ W Sbjct: 745 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 793 Query: 543 AFCESFHSSQ 572 C SFH Q Sbjct: 794 RHCASFHDEQ 803 [12][TOP] >UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE RASPBERRY) RepID=POL1_TORVR Length = 2197 Score = 167 bits (423), Expect = 5e-40 Identities = 88/190 (46%), Positives = 115/190 (60%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+ K Sbjct: 1842 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 1901 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P Sbjct: 1902 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 1956 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + ++++ L LN VAL ELYLH D ++F VR+F+V ++ W Sbjct: 1957 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 2005 Query: 543 AFCESFHSSQ 572 C SFH Q Sbjct: 2006 RHCASFHDEQ 2015 [13][TOP] >UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA8_9SECO Length = 985 Score = 167 bits (422), Expect = 7e-40 Identities = 88/190 (46%), Positives = 113/190 (59%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA K Sbjct: 630 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILARYK 689 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + +++ L LN VAL ELYLH D ++F VR+F+V ++ W Sbjct: 745 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQW 793 Query: 543 AFCESFHSSQ 572 C SFH Q Sbjct: 794 RHCASFHDEQ 803 [14][TOP] >UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA6_9SECO Length = 985 Score = 166 bits (420), Expect = 1e-39 Identities = 88/190 (46%), Positives = 113/190 (59%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA K Sbjct: 630 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILANIK 689 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + +++ L LN VAL ELYLH D ++F VR+F+V ++ W Sbjct: 745 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 793 Query: 543 AFCESFHSSQ 572 C SFH Q Sbjct: 794 RHCASFHDEQ 803 [15][TOP] >UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q155U1_9SECO Length = 711 Score = 162 bits (410), Expect = 2e-38 Identities = 85/190 (44%), Positives = 113/190 (59%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+LI Y YR P+ F+Q VCLIVYGDDNLIS+ P +FNGE I+ TLA+ + Sbjct: 356 FNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKSTLAKYR 415 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 + ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P Sbjct: 416 ITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 470 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 + +++ L LN VAL ELYLH D ++F VR+F+V ++ W Sbjct: 471 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQW 519 Query: 543 AFCESFHSSQ 572 C SFH Q Sbjct: 520 RHCASFHDEQ 529 [16][TOP] >UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud Blight RepID=POL1_TRSVB Length = 2304 Score = 152 bits (385), Expect = 1e-35 Identities = 84/172 (48%), Positives = 105/172 (61%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRY Y+ + P PE RF+ V L+VYGDDNLI+V PS F GE I+ TLA KK Sbjct: 1854 FNEILIRYVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLARKK 1913 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 + ITDGSDK +P +E KP +LDFLKR FL D+G + LD T I+SSL +L Sbjct: 1914 ITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR------ 1967 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 518 S + D I L NV AL ELY D +EF +R+F++ RLP+ Sbjct: 1968 ---------SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPM 2010 [17][TOP] >UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus RepID=A2ID54_9SECO Length = 1916 Score = 151 bits (381), Expect = 4e-35 Identities = 83/191 (43%), Positives = 111/191 (58%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEIL+R Y+ + P + F + V L+VYGDDNLI+V PS FNG+ I+ T+A+ + Sbjct: 1551 FNEILVRMVYKTVVPGVPRNHFNEYVTLLVYGDDNLIAVDPSILEVFNGDVIKKTMAKWR 1610 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK +PT+ KP LDFLKR F D G + APLD TAI+SSL+W+ Sbjct: 1611 VTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ-- 1668 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 DV+ L N AL+E++ H D EF +RSF+V+++P D TW Sbjct: 1669 -------------DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTW 1714 Query: 543 AFCESFHSSQQ 575 FH +QQ Sbjct: 1715 DQARCFHEAQQ 1725 [18][TOP] >UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus RepID=POL1_GFLV Length = 2284 Score = 140 bits (354), Expect = 5e-32 Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 1/192 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 F E+L+RY ++K+ P K F + V LI YGDDN+ +VA S +F G+A+++ +A+ Sbjct: 1806 FKELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDALKMQMAKLG 1865 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDG DK TI +P EL+FLKR F++ G+I APL+ +I SSL ++ Sbjct: 1866 VTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR------ 1919 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539 S D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + T Sbjct: 1920 ---------SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTT 1970 Query: 540 WAFCESFHSSQQ 575 W ESFH Q+ Sbjct: 1971 WFQAESFHECQK 1982 [19][TOP] >UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus RepID=UPI00003FE537 Length = 825 Score = 134 bits (336), Expect = 6e-30 Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 1/191 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +A Sbjct: 346 FNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLG 405 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++ Sbjct: 406 VTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR------ 459 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539 S D++++LV NVN AL+ELYLH D + + VR F++ +LP + T Sbjct: 460 ---------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTT 510 Query: 540 WAFCESFHSSQ 572 W + FH Q Sbjct: 511 WYEAQIFHECQ 521 [20][TOP] >UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW RepID=POL1_ARMVN Length = 2284 Score = 134 bits (336), Expect = 6e-30 Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 1/191 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +A Sbjct: 1805 FNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLG 1864 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++ Sbjct: 1865 VTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR------ 1918 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539 S D++++LV NVN AL+ELYLH D + + VR F++ +LP + T Sbjct: 1919 ---------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTT 1969 Query: 540 WAFCESFHSSQ 572 W + FH Q Sbjct: 1970 WYEAQIFHECQ 1980 [21][TOP] >UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV Length = 2285 Score = 132 bits (333), Expect = 1e-29 Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 1/191 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE+L+RY ++K+ P + F + V LI YGDDN+ +V+ S F G+A++ +A Sbjct: 1807 FNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANVG 1866 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDG DK TI +P EL+FLKR K + G+I APL+ +I SSL ++ Sbjct: 1867 VTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR------ 1920 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539 S D++++LV NVN AL+EL+LH D + F VR+F++ +LP + T Sbjct: 1921 ---------SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTT 1971 Query: 540 WAFCESFHSSQ 572 W ++FH Q Sbjct: 1972 WYQAQTFHECQ 1982 [22][TOP] >UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus RepID=UPI0000163DCE Length = 707 Score = 129 bits (325), Expect = 1e-28 Identities = 78/190 (41%), Positives = 102/190 (53%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR LA+ Sbjct: 347 FNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVN 406 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T Sbjct: 407 VIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSI 466 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 H L NV+ AL+ELYLH + F +R F+ R +W Sbjct: 467 HI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSW 509 Query: 543 AFCESFHSSQ 572 +FH Q Sbjct: 510 REAFAFHQGQ 519 [23][TOP] >UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus RepID=POL1_BRAV Length = 2094 Score = 129 bits (325), Expect = 1e-28 Identities = 78/190 (41%), Positives = 102/190 (53%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR LA+ Sbjct: 1734 FNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVN 1793 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T Sbjct: 1794 VIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSI 1853 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542 H L NV+ AL+ELYLH + F +R F+ R +W Sbjct: 1854 HI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSW 1896 Query: 543 AFCESFHSSQ 572 +FH Q Sbjct: 1897 REAFAFHQGQ 1906 [24][TOP] >UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus RepID=O37086_9SECO Length = 2150 Score = 115 bits (288), Expect = 2e-24 Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 1/172 (0%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRY YRK+ P P F + V L+VYGDDNL+++ +F+G I+ +A Sbjct: 1785 FNEILIRYVYRKVTPAPACNFFNKYVRLMVYGDDNLLTIKEEVIPFFDGPVIKREMASVG 1844 Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362 + ITDG+DK + T+E KP L+FLKR F + G++ APLD T++++ L++L + F Sbjct: 1845 ITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTSMYTRLFYLPLALMAF 1904 Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVRSFFVARLP 515 + NV L E+ LH N +EF RVR+F+V++ P Sbjct: 1905 IPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRNFYVSKAP 1943 [25][TOP] >UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis virus RepID=B9UKJ7_9SECO Length = 76 Score = 111 bits (277), Expect = 5e-23 Identities = 53/68 (77%), Positives = 61/68 (89%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185 +EILIRYAY+KLAPKP++ F +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+ Sbjct: 9 HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68 Query: 186 KITDGSDK 209 KITDGSDK Sbjct: 69 KITDGSDK 76 [26][TOP] >UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring virus RepID=B4ZF31_9SECO Length = 73 Score = 103 bits (258), Expect = 7e-21 Identities = 49/60 (81%), Positives = 54/60 (90%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182 FNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK Sbjct: 13 FNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 72 [27][TOP] >UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO Length = 2366 Score = 100 bits (250), Expect = 6e-20 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 2/184 (1%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK- 179 FNEIL+R AYR L P E+ F V LIVYGDDN++ + P+ S FNG I+ + E+ Sbjct: 1910 FNEILVRCAYRSLVPDIERPFFSNNVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMKEEL 1969 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPSKD 356 +KITDG+DK +P I+ +P + +FLKR + K G+ +APL T+IFS L ++ Sbjct: 1970 GIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIFSCLRYV----- 2024 Query: 357 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 536 + Y + +++ NV +L E LH R+ F P V++ Sbjct: 2025 ------RLQNYDWQAPLLQ----NVQGSLYEASLHGPEMH-DRIYKHFAMHFPKWVEEHE 2073 Query: 537 TWAF 548 + + Sbjct: 2074 LYTY 2077 [28][TOP] >UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO Length = 1858 Score = 100 bits (248), Expect = 1e-19 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ A+ FNG ++ Sbjct: 1501 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVANVFNGRTLKAE 1560 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 +A+ V ITDG DK +PT+E + DFLKR F KL+ V +P + +++++ L+++ Sbjct: 1561 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEKSSLWAQLHYVNT 1619 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464 + +D E ++N+N L ELY+H+ Sbjct: 1620 T---------------SLDKQEAYLVNLNNVLKELYMHS 1643 [29][TOP] >UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain cherry RepID=POL1_RRVC Length = 2367 Score = 99.8 bits (247), Expect = 1e-19 Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 2/184 (1%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK- 179 FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+ S FNG AI+ + E+ Sbjct: 1911 FNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKEEL 1970 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPSKD 356 +KITDG+DK +P I +P + +FLKR + K G+ +APL T+I+S L ++ Sbjct: 1971 GIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYV----- 2025 Query: 357 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 536 + Y + +++ NV +L E LH R+ F P V++ Sbjct: 2026 ------RLQNYDWQAPLLQ----NVQGSLYEASLHGPDMH-ARIYKHFATHFPKWVEEHE 2074 Query: 537 TWAF 548 + + Sbjct: 2075 LYTY 2078 [30][TOP] >UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus RepID=UPI0000163D09 Length = 711 Score = 98.6 bits (244), Expect = 3e-19 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG ++ Sbjct: 354 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE 413 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L+++ Sbjct: 414 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYVNT 472 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464 + +D E ++N+N L ELY+++ Sbjct: 473 T---------------NLDKQEAYLVNLNNVLKELYMYS 496 [31][TOP] >UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO Length = 1858 Score = 98.6 bits (244), Expect = 3e-19 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 5/159 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG ++ Sbjct: 1501 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE 1560 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L+++ Sbjct: 1561 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYVNT 1619 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464 + +D E ++N+N L ELY+++ Sbjct: 1620 T---------------NLDKQEAYLVNLNNVLKELYMYS 1643 [32][TOP] >UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO Length = 1851 Score = 95.1 bits (235), Expect = 3e-18 Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++ Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++ Sbjct: 1554 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 +++ E ++N+ L ELYLH+ +E +++R ++R+ L Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657 Query: 528 -QFRTWAFCESFHSSQQ 575 T A E FHS Q+ Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674 [33][TOP] >UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO Length = 1851 Score = 94.0 bits (232), Expect = 7e-18 Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++ Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++ Sbjct: 1554 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 +++ E ++N+ L ELYLH+ + Q +R ++R+ L Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHSPEEACQ-LRRRALSRIEWLQK 1657 Query: 528 -QFRTWAFCESFHSSQQ 575 T A E FHS Q+ Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674 [34][TOP] >UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle virus RepID=POL1_APMV Length = 729 Score = 94.0 bits (232), Expect = 7e-18 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKLAPK----PEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+L+RY ++K+ + P +C F + +VYGDDNLISV+P FNG+ ++ Sbjct: 378 FNELLVRYCFKKIMREGGATPLECSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKLLKEC 437 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 +A V ITDG DK PT+E +P + DFLKR F++ V AP + +++++ L++++ Sbjct: 438 MARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWDAPEERSSLYTQLHYVST 497 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524 Y+G + VNV + ELY+H+ KE +R + LP L Sbjct: 498 KMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKEASDLRRKALRDLPWLSR 541 Query: 525 DQFRTWAFCESFHSSQQ 575 + T ++F++ Q+ Sbjct: 542 SKIGTMENVQAFYAMQR 558 [35][TOP] >UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus RepID=UPI0000163CF4 Length = 710 Score = 93.6 bits (231), Expect = 1e-17 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++ Sbjct: 353 FNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 412 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++ Sbjct: 413 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 471 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 +++ E ++N+ L ELYLH+ +E +R+R ++ + L Sbjct: 472 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWLQK 516 Query: 528 -QFRTWAFCESFHSSQQ 575 T A E FHS Q+ Sbjct: 517 ADVPTIAQIEEFHSMQR 533 [36][TOP] >UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO Length = 1851 Score = 93.6 bits (231), Expect = 1e-17 Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+LIRY+Y KL AP F+ V L VYGDDNLISV +F+G ++ Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L++++ Sbjct: 1554 LAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 +++ E ++N+ L ELYLH+ +E +++R ++R+ L Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657 Query: 528 -QFRTWAFCESFHSSQQ 575 T A E FHS Q+ Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674 [37][TOP] >UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain Kentucky G7) RepID=POL1_BPMV Length = 1850 Score = 93.6 bits (231), Expect = 1e-17 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++ Sbjct: 1493 FNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1552 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++ Sbjct: 1553 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1611 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 +++ E ++N+ L ELYLH+ +E +R+R ++ + L Sbjct: 1612 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWLQK 1656 Query: 528 -QFRTWAFCESFHSSQQ 575 T A E FHS Q+ Sbjct: 1657 ADVPTIAQIEEFHSMQR 1673 [38][TOP] >UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO Length = 1851 Score = 92.0 bits (227), Expect = 3e-17 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+LIRY+Y KL AP F+ V L VYGDDN ISV +F+G ++ Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNFISVHEYVKPYFSGSKLKSF 1553 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L++++ Sbjct: 1554 LAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 +++ E ++N+ L ELYLH+ +E +++R ++R+ L Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657 Query: 528 -QFRTWAFCESFHSSQQ 575 T A E FHS Q+ Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674 [39][TOP] >UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus RepID=UPI0000163D14 Length = 711 Score = 88.2 bits (217), Expect = 4e-16 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+ ++ + Sbjct: 353 FNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLKQS 412 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+++ Sbjct: 413 LAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV-- 470 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 485 + +K Y + NV L ELY+H+ ++ EF+R Sbjct: 471 ---NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 505 [40][TOP] >UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus RepID=POL1_CPMV Length = 1866 Score = 88.2 bits (217), Expect = 4e-16 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+ ++ + Sbjct: 1508 FNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLKQS 1567 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+++ Sbjct: 1568 LAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV-- 1625 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 485 + +K Y + NV L ELY+H+ ++ EF+R Sbjct: 1626 ---NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 1660 [41][TOP] >UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus RepID=UPI0000163D04 Length = 713 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G ++ Sbjct: 354 FNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQA 413 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 +A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L+++ Sbjct: 414 MARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNV 473 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 + + + + + V+V+ EL ++ ++E Sbjct: 474 N----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 503 [42][TOP] >UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO Length = 1853 Score = 83.2 bits (204), Expect = 1e-14 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 2/174 (1%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE + Sbjct: 1503 NEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFFLRL 1562 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 + +TDG DK I + + DFLKR F L G P+ +++ L+++ K Sbjct: 1563 SITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAKK-- 1620 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 521 +++ + V N+N L EL+LH S+E +R V L L Sbjct: 1621 -------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTLKWL 1660 [43][TOP] >UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus RepID=POL1_RCMV Length = 1864 Score = 83.2 bits (204), Expect = 1e-14 Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G ++ Sbjct: 1505 FNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQA 1564 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 +A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L+++ Sbjct: 1565 MARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNV 1624 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 + + + + + V+V+ EL ++ ++E Sbjct: 1625 N----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 1654 [44][TOP] >UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus RepID=UPI000180D482 Length = 474 Score = 82.8 bits (203), Expect = 2e-14 Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 2/171 (1%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE + Sbjct: 318 NEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFFLRL 377 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 + +TDG DK I + + DFLKR F L G P+ +++ L+++ K Sbjct: 378 SITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAKK-- 435 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARL 512 +++ + V N+N L EL+LH S+E +R V L Sbjct: 436 -------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTL 472 [45][TOP] >UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus RepID=Q06RG7_9SECO Length = 396 Score = 81.6 bits (200), Expect = 4e-14 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++ Sbjct: 155 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 214 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+++ Sbjct: 215 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 274 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515 + + H K + V+V+ EL + N AL + K QRV + LP Sbjct: 275 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 323 Query: 516 LLVDQFRTWAFC 551 + +A C Sbjct: 324 TVAQIEEWYATC 335 [46][TOP] >UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO Length = 1857 Score = 81.6 bits (200), Expect = 4e-14 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++ Sbjct: 1499 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 1558 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+++ Sbjct: 1559 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 1618 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515 + + H K + V+V+ EL + N AL + K QRV + LP Sbjct: 1619 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 1667 Query: 516 LLVDQFRTWAFC 551 + +A C Sbjct: 1668 TVAQIEEWYATC 1679 [47][TOP] >UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO Length = 1860 Score = 81.6 bits (200), Expect = 4e-14 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++ Sbjct: 1502 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 1561 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+++ Sbjct: 1562 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 1621 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515 + + H K + V+V+ EL + N AL + K QRV + LP Sbjct: 1622 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 1670 Query: 516 LLVDQFRTWAFC 551 + +A C Sbjct: 1671 TVAQIEEWYATC 1682 [48][TOP] >UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus RepID=UPI0000163CFC Length = 712 Score = 79.3 bits (194), Expect = 2e-13 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G ++ Sbjct: 352 FNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEF 411 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 L + ITDG DK +P + + + DFLKR F K V P + ++++ L+++T Sbjct: 412 LKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTT 471 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 + + H E ++NV + ELYLH D +E +R + + L + Sbjct: 472 NNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELRRKAIQNVDFLKE 515 Query: 528 ---QFRTWAFCESFHSSQQ 575 T A + F++ Q+ Sbjct: 516 NPKDLPTMAAIKEFYNMQR 534 [49][TOP] >UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO Length = 1853 Score = 79.3 bits (194), Expect = 2e-13 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 4/164 (2%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YA+R R F V L+VYGDDNLISV+ + ++ FNGE + + Sbjct: 1503 NEILVKYAFRMCFADNPMVRESFDTHVSLVVYGDDNLISVSDAISAKFNGEFLVDFFLKL 1562 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 + +TDG DK I + + DFLKR F L G P+ +++ L+++ K Sbjct: 1563 SITVTDGVDKTKKGISFRRLADCDFLKRGFKNLPDGEWIGPMSRESLWPQLHFVRAKK-- 1620 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLH--NDSKEFQR 485 +++ + V N+N L EL+LH N++ E +R Sbjct: 1621 -------------LEMADAYVANLNNILRELWLHSANEATELRR 1651 [50][TOP] >UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus (strain DG) RepID=POL1_CPSMV Length = 1858 Score = 79.3 bits (194), Expect = 2e-13 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G ++ Sbjct: 1498 FNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEF 1557 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 L + ITDG DK +P + + + DFLKR F K V P + ++++ L+++T Sbjct: 1558 LKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTT 1617 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527 + + H E ++NV + ELYLH D +E +R + + L + Sbjct: 1618 NNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELRRKAIQNVDFLKE 1661 Query: 528 ---QFRTWAFCESFHSSQQ 575 T A + F++ Q+ Sbjct: 1662 NPKDLPTMAAIKEFYNMQR 1680 [51][TOP] >UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus RepID=Q2TCK2_9SECO Length = 709 Score = 79.0 bits (193), Expect = 2e-13 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++ Sbjct: 356 FNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEF 415 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA ++ ITDG DK +P ++ + + DFLKR F LYW P Sbjct: 416 LATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWDAP 459 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524 + + Q + ++ E N+ L EL++ D KE +R + R+ LV Sbjct: 460 EEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWLVP 518 Query: 525 DQFRTWAFCESFHSSQQ 575 +T A E++++ + Sbjct: 519 SDLQTVAQIEAWYAGNR 535 [52][TOP] >UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO Length = 1860 Score = 79.0 bits (193), Expect = 2e-13 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ ++ Sbjct: 1502 FNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEF 1561 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L+++ Sbjct: 1562 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYIN 1621 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVARLP 515 + + H K + V+V+ EL +N AL + K QRV + LP Sbjct: 1622 VTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSDLP 1670 Query: 516 LLVDQFRTWAFC 551 + + +A C Sbjct: 1671 TVAQIEKWYASC 1682 [53][TOP] >UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO Length = 1853 Score = 79.0 bits (193), Expect = 2e-13 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++ Sbjct: 1500 FNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEF 1559 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 LA ++ ITDG DK +P ++ + + DFLKR F LYW P Sbjct: 1560 LATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWDAP 1603 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524 + + Q + ++ E N+ L EL++ D KE +R + R+ LV Sbjct: 1604 EEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWLVP 1662 Query: 525 DQFRTWAFCESFHSSQQ 575 +T A E++++ + Sbjct: 1663 SDLQTVAQIEAWYAGNR 1679 [54][TOP] >UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot virus RepID=B2KL92_9SECO Length = 712 Score = 79.0 bits (193), Expect = 2e-13 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Frame = +3 Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ ++ Sbjct: 354 FNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEF 413 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L+++ Sbjct: 414 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYIN 473 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVARLP 515 + + H K + V+V+ EL +N AL + K QRV + LP Sbjct: 474 VTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSDLP 522 Query: 516 LLVDQFRTWAFC 551 + + +A C Sbjct: 523 TVAQIEKWYASC 534 [55][TOP] >UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=UPI0000163DDB Length = 697 Score = 78.2 bits (191), Expect = 4e-13 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 352 NEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 411 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G + P+ +++ L+++ K Sbjct: 412 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAKK-- 469 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 470 -------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 499 [56][TOP] >UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO Length = 1869 Score = 78.2 bits (191), Expect = 4e-13 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 1524 NEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 1583 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G + P+ +++ L+++ K Sbjct: 1584 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAKK-- 1641 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 1642 -------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 1671 [57][TOP] >UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO Length = 1870 Score = 77.8 bits (190), Expect = 6e-13 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 3/192 (1%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVSFMEGL 1584 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL-VDQFR 536 +++ E + N N L EL+LH D KE + R+ + L + +Q Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLH-DVKEAEEFRNKVLRNLRWIGHEQLL 1688 Query: 537 TWAFCESFHSSQ 572 FHS Q Sbjct: 1689 NMQQLAVFHSEQ 1700 [58][TOP] >UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus RepID=UPI0000163DD4 Length = 699 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 354 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 413 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 414 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 471 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 472 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 501 [59][TOP] >UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO Length = 1870 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1584 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672 [60][TOP] >UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO Length = 1769 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 1424 NEILVKYAYWHCFEDNPNVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1483 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 1484 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1541 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 1542 -------------LEMAEAYINNCNNILRELWLHDVREAKEFR 1571 [61][TOP] >UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO Length = 1870 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1584 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672 [62][TOP] >UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt virus 2 RepID=B8Y619_9SECO Length = 594 Score = 77.4 bits (189), Expect = 7e-13 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 249 NEILVKYAYWHCFGDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 308 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 309 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 366 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 367 -------------LEMAEAYINNCNNILCELWLHDVKEAKEFR 396 [63][TOP] >UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1 RepID=UPI0000231CC7 Length = 699 Score = 76.3 bits (186), Expect = 2e-12 Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG + + Sbjct: 354 NEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL 413 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + + DFLKRKF + G + ++ L+++ K Sbjct: 414 GIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKK-- 471 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473 V++ E + N N L EL+L + K Sbjct: 472 -------------VEMSEAYISNCNNILRELWLGSPEK 496 [64][TOP] >UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO Length = 1869 Score = 76.3 bits (186), Expect = 2e-12 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKP-EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 1524 NEILVKYAYWHCFVDNPIVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 1583 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 1584 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKLNPDGTWRSPMSKESLWPQLHYVKAKK-- 1641 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 1642 -------------LEMAEAYINNCNNILRELWLHDVIEAKEFR 1671 [65][TOP] >UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1 Length = 1842 Score = 76.3 bits (186), Expect = 2e-12 Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG + + Sbjct: 1497 NEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL 1556 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + + DFLKRKF + G + ++ L+++ K Sbjct: 1557 GIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKK-- 1614 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473 V++ E + N N L EL+L + K Sbjct: 1615 -------------VEMSEAYISNCNNILRELWLGSPEK 1639 [66][TOP] >UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO Length = 280 Score = 75.5 bits (184), Expect = 3e-12 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 4/162 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + + Sbjct: 130 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 189 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 190 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 247 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEF 479 +++ E + N N L EL+LH+ ++K+F Sbjct: 248 -------------LEMAEAYINNCNNILRELWLHDVKEAKDF 276 [67][TOP] >UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1 Length = 1842 Score = 75.1 bits (183), Expect = 4e-12 Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 2/158 (1%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEILI+YAY K R F V + VYGDDNLISV+ + +S FNG + +A Sbjct: 1497 NEILIKYAYWKCFETESLIRDHFDTHVAMAVYGDDNLISVSEAISSRFNGNFLVNFMANL 1556 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR+F + G + ++ L+++ K Sbjct: 1557 GIKVTDGVDKTKIGIEFRTIENCDFLKRRFKENTDGTWSGVMAEEHLWPQLHFVKAKK-- 1614 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473 V++ E + N N L EL+L + K Sbjct: 1615 -------------VEMSEAYISNCNNILRELWLEDPGK 1639 [68][TOP] >UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO Length = 1853 Score = 75.1 bits (183), Expect = 4e-12 Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 6/147 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++ Sbjct: 1500 FNEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKDF 1559 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA + ITDG DK +P ++ + + DFLKR F + G+ AP D ++++ L+++ Sbjct: 1560 LATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF--KNRGLYWDAPEDKESLWAQLHYVN 1617 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL 425 + + H K + V V+ EL + Sbjct: 1618 ANNLEKHEAYKTNL----VTVLRELFM 1640 [69][TOP] >UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic stunt virus RepID=B4ZF30_CNSV Length = 73 Score = 73.2 bits (178), Expect = 1e-11 Identities = 36/68 (52%), Positives = 46/68 (67%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185 NEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +K V Sbjct: 6 NEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKNV 65 Query: 186 KITDGSDK 209 ITDGSDK Sbjct: 66 TITDGSDK 73 [70][TOP] >UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO Length = 1853 Score = 72.8 bits (177), Expect = 2e-11 Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%) Frame = +3 Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 FNEILIRY+++ + P F + V ++VYGDDNL+SV +F+G+ ++ Sbjct: 1500 FNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKRLKEF 1559 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344 LA + ITDG DK +P ++ + + DFLKR F + G+ AP + ++++ L+++ Sbjct: 1560 LATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF--KNRGLYWDAPEEKESLWAQLHYVN 1617 Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL 425 + + H K + V V+ EL + Sbjct: 1618 ANNLEKHEAYKTNL----VTVLRELFM 1640 [71][TOP] >UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO Length = 1870 Score = 72.4 bits (176), Expect = 2e-11 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 4/163 (2%) Frame = +3 Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179 NEIL++YAY P + F V + YGDDNLISV+ + +S F+G + + Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMEEYGDDNLISVSDAISSKFDGSFLVSFIEGL 1584 Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359 +K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K Sbjct: 1585 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642 Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482 +++ E + N N L EL+LH+ ++KEF+ Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672 [72][TOP] >UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus RepID=Q9IJX4_CRPV Length = 1771 Score = 66.2 bits (160), Expect = 2e-09 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 8/172 (4%) Frame = +3 Query: 3 FNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 +N +++R + RKLAP+ + + F++ V +I YGDDN ++++ WFN I Sbjct: 1583 YNSMIMRIVWILLARKLAPEMQSMKKFRENVSMISYGDDNCLNISDRVVEWFNQITISEQ 1642 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLYW 338 + E K + TD K ++ E+ FLK++F+ +L V APL I+ L W Sbjct: 1643 MKEIKHEYTD-EGKTGDMVKFPSLSEIHFLKKRFVFSHQLQRTV--APLQKDVIYEMLNW 1699 Query: 339 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 494 +D E L++N+N A E+ H S E+Q++RS Sbjct: 1700 T----------------RNTIDPNEILMMNINTAFREIVYHGKS-EYQKLRS 1734 [73][TOP] >UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus RepID=Q3YC01_9SECO Length = 795 Score = 65.5 bits (158), Expect = 3e-09 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%) Frame = +3 Query: 6 NEILIRYAYRKLAPKP------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 NE +R+A++++ + + V VYGDDNL+SV+ +S +N +I Sbjct: 457 NEFFLRFAWKRIVRASLGEAFVHRSIMDREVHFAVYGDDNLVSVSDKYSSLYNLVSISSF 516 Query: 168 LAEKKVKITDG---SDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 338 L E+ V + +G ++D P P P DFLKR+F+ +G + APLD +++ +W Sbjct: 517 LRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFLKRRFVLGSSGRVLAPLDKSSLLGCAHW 575 Query: 339 LTPSKD 356 + S+D Sbjct: 576 VRKSQD 581 [74][TOP] >UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus RepID=UPI000043F357 Length = 707 Score = 63.9 bits (154), Expect = 8e-09 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 N I ++Y KL + E F+Q V YGDDNL+SV FN I Sbjct: 362 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADL 421 Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341 LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+W+ Sbjct: 422 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 479 [75][TOP] >UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV Length = 2250 Score = 63.9 bits (154), Expect = 8e-09 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 N I ++Y KL + E F+Q V YGDDNL+SV FN I Sbjct: 1905 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADL 1964 Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341 LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+W+ Sbjct: 1965 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 2022 [76][TOP] >UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV Length = 2235 Score = 63.9 bits (154), Expect = 8e-09 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 N I ++Y KL + E F+Q V YGDDNL+SV FN I Sbjct: 1890 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITERFNLVKIADL 1949 Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341 LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+W+ Sbjct: 1950 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 2007 [77][TOP] >UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus RepID=Q769F2_SDV Length = 374 Score = 62.8 bits (151), Expect = 2e-08 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%) Frame = +3 Query: 6 NEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 NE +++++ + A + C F + + VYGDDN +SVA AS +N + I Sbjct: 52 NEFYLKWSWMGIMREAGYAKEASLCAFHEATEISVYGDDNFVSVATPVASLYNLKTISEF 111 Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFL-KLDTGVIQAPLDMTAIFSSLYWL 341 L+ VK+ DG+ + TI+P P E+DFLKRKF+ + I PL+ +I L+++ Sbjct: 112 LSRVGVKLGDGA--KSGTIKPFIPLEEVDFLKRKFVADSKSTAILCPLNKRSIEERLFYV 169 Query: 342 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 461 G D I L LN+ AL E + H Sbjct: 170 ----------------RGGQDEIAALELNIATALCEAFFH 193 [78][TOP] >UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus RepID=UPI0000164A53 Length = 709 Score = 62.4 bits (150), Expect = 2e-08 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Frame = +3 Query: 6 NEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 N + +AY KL + + K F+ V VYGDDNLISV + FN I Sbjct: 362 NSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNL 421 Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341 L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I L+W+ Sbjct: 422 LLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLHWV 479 [79][TOP] >UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus RepID=Q9JGP2_9SECO Length = 2079 Score = 62.4 bits (150), Expect = 2e-08 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Frame = +3 Query: 6 NEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 N + +AY KL + + K F+ V VYGDDNLISV + FN I Sbjct: 1732 NSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNL 1791 Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341 L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I L+W+ Sbjct: 1792 LLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLHWV 1849 [80][TOP] >UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO Length = 2158 Score = 62.4 bits (150), Expect = 2e-08 Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 19/167 (11%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161 NE +RYA+ L +P K + + VYGDDNL++V P W+ AI Sbjct: 1458 NEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELQWYTLPAIA 1516 Query: 162 VTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335 L V I +G DK+ K EL FL R F + G +QAPL +I +Y Sbjct: 1517 QELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMY 1576 Query: 336 WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 W+ PS + T + + + G V E+LV +V AL E Sbjct: 1577 WIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622 [81][TOP] >UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic sadwavirus RepID=A4UVR7_SDV Length = 319 Score = 62.0 bits (149), Expect = 3e-08 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Frame = +3 Query: 60 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KP 236 C F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P Sbjct: 21 CAFHEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIP 78 Query: 237 FWELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVI 410 E+DFLKR+F+ D+G I PL +I L+++ G D + Sbjct: 79 LEEVDFLKRQFI-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDEL 121 Query: 411 EELVLNVNVALMELYLH 461 L LNV AL E + H Sbjct: 122 AALELNVATALCEAFFH 138 [82][TOP] >UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO Length = 2158 Score = 62.0 bits (149), Expect = 3e-08 Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 19/167 (11%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161 NE +RYA+ L +P K + + VYGDDNL++V P W+ AI Sbjct: 1458 NEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELHWYTLPAIA 1516 Query: 162 VTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335 L V I +G DK+ K EL FL R F + G +QAPL +I +Y Sbjct: 1517 QELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMY 1576 Query: 336 WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 W+ PS + T + + + G V E+LV +V AL E Sbjct: 1577 WIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622 [83][TOP] >UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU Length = 1759 Score = 58.9 bits (141), Expect = 3e-07 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Frame = +3 Query: 3 FNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 +N I++R ++ K P+ + + F + V LI YGDDN++++ WFN I Sbjct: 1571 YNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQINISEV 1630 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLYW 338 + E + + TD + K ++ + ++ FLKRKF +L V APL + I+ L W Sbjct: 1631 MTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKFRFSPELQRHV--APLKIEVIYEMLNW 1687 Query: 339 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVA 506 S +D E L+ N+ A E+ H +E+ ++RS +A Sbjct: 1688 SRRS----------------IDPDEILMSNIETAFREVVYHG-KEEYDKLRSAVLA 1726 [84][TOP] >UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic sadwavirus RepID=A4UVR5_SDV Length = 319 Score = 58.2 bits (139), Expect = 5e-07 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%) Frame = +3 Query: 66 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242 F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P Sbjct: 23 FYEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIPLE 80 Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416 E+DFLKR+F+ D+G I PL +I L+++ G D + Sbjct: 81 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAA 123 Query: 417 LVLNVNVALMELYLH 461 L LNV AL E + H Sbjct: 124 LELNVATALCEAFFH 138 [85][TOP] >UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU Length = 2155 Score = 57.8 bits (138), Expect = 6e-07 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 19/167 (11%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161 NE +RYA+ L +P K + + VYGDDNL++V P W++ I Sbjct: 1461 NEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGDDNLVAV-PLHLQWYSLPNIA 1519 Query: 162 VTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335 L V I +G DK D ++ + EL FL R F + G APL +I +Y Sbjct: 1520 QELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPMY 1579 Query: 336 WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 W+ P+ + T + + + G+V E+LV +V AL E Sbjct: 1580 WIRPAPGCPDAQAMMENVETGIREAFHHGQV-AYEKLVADVQEALNE 1625 [86][TOP] >UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO Length = 2151 Score = 57.8 bits (138), Expect = 6e-07 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 20/168 (11%) Frame = +3 Query: 6 NEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 158 NE +RYA+ L +P + F Q + + VYGDDNL++V P W++ I Sbjct: 1459 NEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSLPNI 1516 Query: 159 RVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 332 L V I +G DK D ++ + EL FL R F + G APL +I + Sbjct: 1517 AHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPM 1576 Query: 333 YWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 YW+ P+ + T + + + G V ++LVL+V AL E Sbjct: 1577 YWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVLDVQTALDE 1623 [87][TOP] >UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B RepID=A7KCA2_9VIRU Length = 1614 Score = 57.8 bits (138), Expect = 6e-07 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185 N + +RY Y L P+ F+ V L+ YGDDN++SV+ C WFN +I T A + Sbjct: 1302 NSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC-DWFNHTSISETFATLNI 1360 Query: 186 KITDGSDKDAPTIEPKPFWELDFLKRKFLKLD-TGVIQAPLDMTAIFSSLYWLTPSK 353 T +DK++ ++ + FLKR + D G APL+ +I SL T SK Sbjct: 1361 VYT-MADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEEESIEKSLMVWTRSK 1416 [88][TOP] >UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus RepID=A0N0G3_9VIRU Length = 1943 Score = 55.5 bits (132), Expect = 3e-06 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 20/168 (11%) Frame = +3 Query: 6 NEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 158 NE +RYA+ L +P + F Q + + VYGDDNL++V P W++ I Sbjct: 1251 NEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSLPNI 1308 Query: 159 RVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 332 L V I +G DK D ++ + EL FL R F + G APL +I + Sbjct: 1309 AHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPM 1368 Query: 333 YWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449 YW+ P+ + T + + + G V ++LV +V AL E Sbjct: 1369 YWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVSDVQTALDE 1415 [89][TOP] >UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus RepID=UPI0000164A61 Length = 694 Score = 55.1 bits (131), Expect = 4e-06 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170 N+ + +A+RK+ + + R ++ C VYGDDN++S + +N I L Sbjct: 357 NQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAEL 416 Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 350 V ++DG K ++ F ELDFLKR+++ PL +AI L+W+ S Sbjct: 417 KTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSS 475 Query: 351 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 491 +D +E L N ALME + H D F R R Sbjct: 476 EDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 507 [90][TOP] >UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO Length = 1915 Score = 55.1 bits (131), Expect = 4e-06 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170 N+ + +A+RK+ + + R ++ C VYGDDN++S + +N I L Sbjct: 1578 NQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAEL 1637 Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 350 V ++DG K ++ F ELDFLKR+++ PL +AI L+W+ S Sbjct: 1638 KTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSS 1696 Query: 351 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 491 +D +E L N ALME + H D F R R Sbjct: 1697 EDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 1728 [91][TOP] >UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO Length = 2163 Score = 54.7 bits (130), Expect = 5e-06 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Frame = +3 Query: 6 NEILIRYAYRKL----APKPEKCRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170 N+ + +A+RK+ +P R +T C VYGDDN++S + + +N I L Sbjct: 1639 NQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVVSFSLAVRDMYNLCTIADEL 1698 Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTG-VIQAPLDMTAIFSSLYWLTP 347 V ++DG K I+ F +LDFLKR++ +L+ G + PLD AI L+W+ Sbjct: 1699 KTIGVTLSDGK-KTGVLIKWTGFKDLDFLKRRW-ELEPGHGFKCPLDKMAIEERLFWVRK 1756 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 461 S+D +E L N ALME + H Sbjct: 1757 SEDN----------------MESLDDNCYSALMEAFHH 1778 [92][TOP] >UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus RepID=UPI0000164A59 Length = 682 Score = 54.3 bits (129), Expect = 7e-06 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Frame = +3 Query: 66 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242 F + + +YGDDN +SVA AS +N I L VK+ DG+ TI+P P Sbjct: 386 FHEATEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLE 443 Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416 E+DFLKR+F+ D+G I PL +I L+++ G D I Sbjct: 444 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAA 486 Query: 417 LVLNVNVALMELYLH 461 L LN+ AL E + H Sbjct: 487 LELNIATALCEAFFH 501 [93][TOP] >UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV Length = 2081 Score = 54.3 bits (129), Expect = 7e-06 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 3/135 (2%) Frame = +3 Query: 66 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242 F + + +YGDDN +SVA AS +N I L VK+ DG+ TI+P P Sbjct: 1785 FHEATEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLE 1842 Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416 E+DFLKR+F+ D+G I PL +I L+++ G D I Sbjct: 1843 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAA 1885 Query: 417 LVLNVNVALMELYLH 461 L LN+ AL E + H Sbjct: 1886 LELNIATALCEAFFH 1900 [94][TOP] >UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine RNA virus RepID=B3F388_9VIRU Length = 139 Score = 54.3 bits (129), Expect = 7e-06 Identities = 27/63 (42%), Positives = 38/63 (60%) Frame = +3 Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185 N + +RYAY L PK E F++ V L+ YGDDN++SV+P+ A W+N AI A + Sbjct: 73 NSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWYNHTAIAAAFATMDI 131 Query: 186 KIT 194 T Sbjct: 132 TYT 134 [95][TOP] >UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling virus RepID=Q9YZ97_SDV Length = 872 Score = 53.9 bits (128), Expect = 9e-06 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 6/166 (3%) Frame = +3 Query: 6 NEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167 NE +++++ L A + F + + +YGDDN +SVA AS +N + I Sbjct: 549 NEFYLKWSWMGLMKEAGYAKEASLYAFHEATEISLYGDDNFVSVATPVASLYNLKTISEF 608 Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347 L VK+ DG+ K T P E+DFLKR+F+ A TAI L P Sbjct: 609 LRRIGVKLGDGA-KTGITKPFIPLEEVDFLKRQFV--------ADAGSTAI------LCP 653 Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQR 485 K K ++ G D + L LN+ AL E + H KE+ R Sbjct: 654 LK-KISIEERLFYVKGGQDELAALELNMATALCEAFFH--GKEYFR 696