BB913839 ( RCE13295 )

[UP]


[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
          Length = 824

 Score =  319 bits (818), Expect = 8e-86
 Identities = 153/191 (80%), Positives = 167/191 (87%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNEILIRYAY+KLAP PE+ RF  TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 355 FNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 414

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 415 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 474

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
           H  QK S + GEVDVIEEL+LNVNVALMELYLHND  EFQRVR F+  RLPL+V Q RTW
Sbjct: 475 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 534

Query: 543 AFCESFHSSQQ 575
           AFCE+FHS+QQ
Sbjct: 535 AFCEAFHSAQQ 545

[2][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
           RepID=UPI0000163E03
          Length = 824

 Score =  319 bits (818), Expect = 8e-86
 Identities = 150/191 (78%), Positives = 167/191 (87%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 355 FNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 414

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 415 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 474

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
           H  Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++  LPL   QFRTW
Sbjct: 475 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 534

Query: 543 AFCESFHSSQQ 575
           AFCE+FHS+QQ
Sbjct: 535 AFCEAFHSAQQ 545

[3][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
            RepID=POL1_TBRVM
          Length = 2266

 Score =  319 bits (818), Expect = 8e-86
 Identities = 153/191 (80%), Positives = 167/191 (87%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEILIRYAY+KLAP PE+ RF  TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 1797 FNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 1856

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 1857 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 1916

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
            H  QK S + GEVDVIEEL+LNVNVALMELYLHND  EFQRVR F+  RLPL+V Q RTW
Sbjct: 1917 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 1976

Query: 543  AFCESFHSSQQ 575
            AFCE+FHS+QQ
Sbjct: 1977 AFCEAFHSAQQ 1987

[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=POL1_BRSV
          Length = 2264

 Score =  319 bits (818), Expect = 8e-86
 Identities = 150/191 (78%), Positives = 167/191 (87%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 1795 FNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 1854

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 1855 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 1914

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
            H  Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++  LPL   QFRTW
Sbjct: 1915 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 1974

Query: 543  AFCESFHSSQQ 575
            AFCE+FHS+QQ
Sbjct: 1975 AFCEAFHSAQQ 1985

[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
           RepID=UPI00017F0C90
          Length = 826

 Score =  286 bits (732), Expect = 8e-76
 Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNEILIRYAY+ LAP PEK  F   VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAEK+
Sbjct: 353 FNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKR 412

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
           +KITDGSDKDAPTIE KPF ELDFLKRKF +  + G + APLD +AIFS L+WLTP K K
Sbjct: 413 IKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSK 472

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRT 539
           F   +KA  Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRT
Sbjct: 473 FALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRT 532

Query: 540 WAFCESFHSSQQ 575
           WAFCE+FHS+QQ
Sbjct: 533 WAFCEAFHSAQQ 544

[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=POL1_GCMV
          Length = 2252

 Score =  286 bits (732), Expect = 8e-76
 Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEILIRYAY+ LAP PEK  F   VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAEK+
Sbjct: 1779 FNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKR 1838

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            +KITDGSDKDAPTIE KPF ELDFLKRKF +  + G + APLD +AIFS L+WLTP K K
Sbjct: 1839 IKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSK 1898

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRT 539
            F   +KA  Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRT
Sbjct: 1899 FALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRT 1958

Query: 540  WAFCESFHSSQQ 575
            WAFCE+FHS+QQ
Sbjct: 1959 WAFCEAFHSAQQ 1970

[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
           RepID=UPI00003FE52F
          Length = 846

 Score =  195 bits (495), Expect = 2e-48
 Identities = 102/191 (53%), Positives = 130/191 (68%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNEIL+RY ++ L   P++  F   V L+VYGDDNL+S     A +FNGE I+ TL +K 
Sbjct: 363 FNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKN 422

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           V ITDGSDK AP I+ K   ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP   K 
Sbjct: 423 VTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKM 482

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                  Q    VD + EL LNV VAL ELYLH + +EFQRVR+F+  ++ +L   + TW
Sbjct: 483 PKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTW 541

Query: 543 AFCESFHSSQQ 575
           A  E+FH S+Q
Sbjct: 542 ADREAFHMSKQ 552

[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=POL1_CNSV
          Length = 2336

 Score =  195 bits (495), Expect = 2e-48
 Identities = 102/191 (53%), Positives = 130/191 (68%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEIL+RY ++ L   P++  F   V L+VYGDDNL+S     A +FNGE I+ TL +K 
Sbjct: 1853 FNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKN 1912

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK AP I+ K   ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP   K 
Sbjct: 1913 VTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKM 1972

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                   Q    VD + EL LNV VAL ELYLH + +EFQRVR+F+  ++ +L   + TW
Sbjct: 1973 PKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTW 2031

Query: 543  AFCESFHSSQQ 575
            A  E+FH S+Q
Sbjct: 2032 ADREAFHMSKQ 2042

[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA9_9SECO
          Length = 985

 Score =  167 bits (424), Expect = 4e-40
 Identities = 89/190 (46%), Positives = 113/190 (59%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+LIRY YR   P+P    F Q VCLIVYGDDNLISV P    +FNG+ I+  LA+ K
Sbjct: 630  FNEMLIRYVYRVTVPRPLVNNFNQEVCLIVYGDDNLISVKPDTMKYFNGDRIKEVLAKFK 689

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AIFSSLY++ P     
Sbjct: 690  VTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP----- 744

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                       + + +  L LN  VAL ELYLHND ++F  VR+F+V ++         W
Sbjct: 745  -----------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQW 793

Query: 543  AFCESFHSSQ 572
              C +FH  Q
Sbjct: 794  RHCAAFHDEQ 803

[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
           RepID=UPI00003FE53F
          Length = 711

 Score =  167 bits (423), Expect = 5e-40
 Identities = 88/190 (46%), Positives = 115/190 (60%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNE+LIRY YR   P+P    F+Q VCLIVYGDDNLIS+ P    +FNGE I+  LA+ K
Sbjct: 356 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 415

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           V ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AI+SSLY++ P     
Sbjct: 416 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 470

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                      + ++++ L LN  VAL ELYLH D ++F  VR+F+V ++         W
Sbjct: 471 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 519

Query: 543 AFCESFHSSQ 572
             C SFH  Q
Sbjct: 520 RHCASFHDEQ 529

[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA7_9SECO
          Length = 985

 Score =  167 bits (423), Expect = 5e-40
 Identities = 88/190 (46%), Positives = 115/190 (60%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+LIRY YR   P+P    F+Q VCLIVYGDDNLIS+ P    +FNGE I+  LA+ K
Sbjct: 630  FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 689

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AI+SSLY++ P     
Sbjct: 690  VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                       + ++++ L LN  VAL ELYLH D ++F  VR+F+V ++         W
Sbjct: 745  -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 793

Query: 543  AFCESFHSSQ 572
              C SFH  Q
Sbjct: 794  RHCASFHDEQ 803

[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
            RASPBERRY) RepID=POL1_TORVR
          Length = 2197

 Score =  167 bits (423), Expect = 5e-40
 Identities = 88/190 (46%), Positives = 115/190 (60%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+LIRY YR   P+P    F+Q VCLIVYGDDNLIS+ P    +FNGE I+  LA+ K
Sbjct: 1842 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 1901

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AI+SSLY++ P     
Sbjct: 1902 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 1956

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                       + ++++ L LN  VAL ELYLH D ++F  VR+F+V ++         W
Sbjct: 1957 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 2005

Query: 543  AFCESFHSSQ 572
              C SFH  Q
Sbjct: 2006 RHCASFHDEQ 2015

[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA8_9SECO
          Length = 985

 Score =  167 bits (422), Expect = 7e-40
 Identities = 88/190 (46%), Positives = 113/190 (59%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+LIRY YR   P+P    F+Q VCLIVYGDDNLIS+ P    +FNGE I+  LA  K
Sbjct: 630  FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILARYK 689

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AI+SSLY++ P     
Sbjct: 690  VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                       + +++  L LN  VAL ELYLH D ++F  VR+F+V ++         W
Sbjct: 745  -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQW 793

Query: 543  AFCESFHSSQ 572
              C SFH  Q
Sbjct: 794  RHCASFHDEQ 803

[14][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA6_9SECO
          Length = 985

 Score =  166 bits (420), Expect = 1e-39
 Identities = 88/190 (46%), Positives = 113/190 (59%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+LIRY YR   P+P    F+Q VCLIVYGDDNLIS+ P    +FNGE I+  LA  K
Sbjct: 630  FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILANIK 689

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AI+SSLY++ P     
Sbjct: 690  VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                       + +++  L LN  VAL ELYLH D ++F  VR+F+V ++         W
Sbjct: 745  -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 793

Query: 543  AFCESFHSSQ 572
              C SFH  Q
Sbjct: 794  RHCASFHDEQ 803

[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
           virus RepID=Q155U1_9SECO
          Length = 711

 Score =  162 bits (410), Expect = 2e-38
 Identities = 85/190 (44%), Positives = 113/190 (59%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNE+LI Y YR   P+     F+Q VCLIVYGDDNLIS+ P    +FNGE I+ TLA+ +
Sbjct: 356 FNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKSTLAKYR 415

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           + ITDGSDK++P +  KP  +LDFLKR F     G + APLD+ AI+SSLY++ P     
Sbjct: 416 ITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 470

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                      + +++  L LN  VAL ELYLH D ++F  VR+F+V ++         W
Sbjct: 471 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQW 519

Query: 543 AFCESFHSSQ 572
             C SFH  Q
Sbjct: 520 RHCASFHDEQ 529

[16][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
            Blight RepID=POL1_TRSVB
          Length = 2304

 Score =  152 bits (385), Expect = 1e-35
 Identities = 84/172 (48%), Positives = 105/172 (61%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEILIRY Y+ + P PE  RF+  V L+VYGDDNLI+V PS    F GE I+ TLA KK
Sbjct: 1854 FNEILIRYVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLARKK 1913

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            + ITDGSDK +P +E KP  +LDFLKR FL  D+G +   LD T I+SSL +L       
Sbjct: 1914 ITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR------ 1967

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 518
                     S + D I  L  NV  AL ELY   D +EF  +R+F++ RLP+
Sbjct: 1968 ---------SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPM 2010

[17][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
            RepID=A2ID54_9SECO
          Length = 1916

 Score =  151 bits (381), Expect = 4e-35
 Identities = 83/191 (43%), Positives = 111/191 (58%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEIL+R  Y+ + P   +  F + V L+VYGDDNLI+V PS    FNG+ I+ T+A+ +
Sbjct: 1551 FNEILVRMVYKTVVPGVPRNHFNEYVTLLVYGDDNLIAVDPSILEVFNGDVIKKTMAKWR 1610

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK +PT+  KP   LDFLKR F   D G + APLD TAI+SSL+W+       
Sbjct: 1611 VTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ-- 1668

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
                         DV+  L  N   AL+E++ H D  EF  +RSF+V+++P   D   TW
Sbjct: 1669 -------------DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTW 1714

Query: 543  AFCESFHSSQQ 575
                 FH +QQ
Sbjct: 1715 DQARCFHEAQQ 1725

[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
            RepID=POL1_GFLV
          Length = 2284

 Score =  140 bits (354), Expect = 5e-32
 Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            F E+L+RY ++K+ P   K  F + V LI YGDDN+ +VA S   +F G+A+++ +A+  
Sbjct: 1806 FKELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDALKMQMAKLG 1865

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDG DK   TI  +P  EL+FLKR F++   G+I APL+  +I SSL ++       
Sbjct: 1866 VTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR------ 1919

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
                     S   D++++L+ NVN AL+ELYLH D   F+ VR+F+  +LP     +  T
Sbjct: 1920 ---------SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTT 1970

Query: 540  WAFCESFHSSQQ 575
            W   ESFH  Q+
Sbjct: 1971 WFQAESFHECQK 1982

[19][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
           RepID=UPI00003FE537
          Length = 825

 Score =  134 bits (336), Expect = 6e-30
 Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNE+L+RY Y+K+ P   +  F + V LI YGDDN+ +V+ S  + F G+A++  +A   
Sbjct: 346 FNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLG 405

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           V ITDG DK   TI  +P  EL+FLKR F K + G+I APL+  +I SSL ++       
Sbjct: 406 VTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR------ 459

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
                    S   D++++LV NVN AL+ELYLH D +  + VR F++ +LP     +  T
Sbjct: 460 ---------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTT 510

Query: 540 WAFCESFHSSQ 572
           W   + FH  Q
Sbjct: 511 WYEAQIFHECQ 521

[20][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
            RepID=POL1_ARMVN
          Length = 2284

 Score =  134 bits (336), Expect = 6e-30
 Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+L+RY Y+K+ P   +  F + V LI YGDDN+ +V+ S  + F G+A++  +A   
Sbjct: 1805 FNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLG 1864

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDG DK   TI  +P  EL+FLKR F K + G+I APL+  +I SSL ++       
Sbjct: 1865 VTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR------ 1918

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
                     S   D++++LV NVN AL+ELYLH D +  + VR F++ +LP     +  T
Sbjct: 1919 ---------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTT 1969

Query: 540  WAFCESFHSSQ 572
            W   + FH  Q
Sbjct: 1970 WYEAQIFHECQ 1980

[21][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
          Length = 2285

 Score =  132 bits (333), Expect = 1e-29
 Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE+L+RY ++K+ P   +  F + V LI YGDDN+ +V+ S    F G+A++  +A   
Sbjct: 1807 FNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANVG 1866

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDG DK   TI  +P  EL+FLKR   K + G+I APL+  +I SSL ++       
Sbjct: 1867 VTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR------ 1920

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
                     S   D++++LV NVN AL+EL+LH D + F  VR+F++ +LP     +  T
Sbjct: 1921 ---------SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTT 1971

Query: 540  WAFCESFHSSQ 572
            W   ++FH  Q
Sbjct: 1972 WYQAQTFHECQ 1982

[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
           RepID=UPI0000163DCE
          Length = 707

 Score =  129 bits (325), Expect = 1e-28
 Identities = 78/190 (41%), Positives = 102/190 (53%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNE LIR+ +R       + RF Q V L++YGDDNLI+V P     FNGE IR  LA+  
Sbjct: 347 FNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVN 406

Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
           V ITDGSDK A  IE KP  +LDFLKR+F KL+ G + APLD+ ++++SL  +T      
Sbjct: 407 VIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSI 466

Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
           H                 L  NV+ AL+ELYLH +   F  +R F+  R         +W
Sbjct: 467 HI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSW 509

Query: 543 AFCESFHSSQ 572
               +FH  Q
Sbjct: 510 REAFAFHQGQ 519

[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
            RepID=POL1_BRAV
          Length = 2094

 Score =  129 bits (325), Expect = 1e-28
 Identities = 78/190 (41%), Positives = 102/190 (53%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNE LIR+ +R       + RF Q V L++YGDDNLI+V P     FNGE IR  LA+  
Sbjct: 1734 FNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVN 1793

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            V ITDGSDK A  IE KP  +LDFLKR+F KL+ G + APLD+ ++++SL  +T      
Sbjct: 1794 VIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSI 1853

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
            H                 L  NV+ AL+ELYLH +   F  +R F+  R         +W
Sbjct: 1854 HI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSW 1896

Query: 543  AFCESFHSSQ 572
                +FH  Q
Sbjct: 1897 REAFAFHQGQ 1906

[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
            RepID=O37086_9SECO
          Length = 2150

 Score =  115 bits (288), Expect = 2e-24
 Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
            FNEILIRY YRK+ P P    F + V L+VYGDDNL+++      +F+G  I+  +A   
Sbjct: 1785 FNEILIRYVYRKVTPAPACNFFNKYVRLMVYGDDNLLTIKEEVIPFFDGPVIKREMASVG 1844

Query: 183  VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
            + ITDG+DK + T+E KP   L+FLKR F   + G++ APLD T++++ L++L  +   F
Sbjct: 1845 ITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTSMYTRLFYLPLALMAF 1904

Query: 363  HTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVRSFFVARLP 515
                 +               NV   L E+ LH N  +EF RVR+F+V++ P
Sbjct: 1905 IPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRNFYVSKAP 1943

[25][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
           virus RepID=B9UKJ7_9SECO
          Length = 76

 Score =  111 bits (277), Expect = 5e-23
 Identities = 53/68 (77%), Positives = 61/68 (89%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
           +EILIRYAY+KLAPKP++  F  +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+
Sbjct: 9   HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68

Query: 186 KITDGSDK 209
           KITDGSDK
Sbjct: 69  KITDGSDK 76

[26][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
           virus RepID=B4ZF31_9SECO
          Length = 73

 Score =  103 bits (258), Expect = 7e-21
 Identities = 49/60 (81%), Positives = 54/60 (90%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
           FNEILIRYAY+KLAP PE+ RF  TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 13  FNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 72

[27][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
          Length = 2366

 Score =  100 bits (250), Expect = 6e-20
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK- 179
            FNEIL+R AYR L P  E+  F   V LIVYGDDN++ + P+  S FNG  I+  + E+ 
Sbjct: 1910 FNEILVRCAYRSLVPDIERPFFSNNVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMKEEL 1969

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPSKD 356
             +KITDG+DK +P I+ +P  + +FLKR + K    G+ +APL  T+IFS L ++     
Sbjct: 1970 GIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIFSCLRYV----- 2024

Query: 357  KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 536
                  +   Y  +  +++    NV  +L E  LH       R+   F    P  V++  
Sbjct: 2025 ------RLQNYDWQAPLLQ----NVQGSLYEASLHGPEMH-DRIYKHFAMHFPKWVEEHE 2073

Query: 537  TWAF 548
             + +
Sbjct: 2074 LYTY 2077

[28][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
          Length = 1858

 Score =  100 bits (248), Expect = 1e-19
 Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEIL+RY YRK+      P+P    F + V L+ YGDDNLISV+   A+ FNG  ++  
Sbjct: 1501 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVANVFNGRTLKAE 1560

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            +A+  V ITDG DK +PT+E +     DFLKR F KL+  V  +P + +++++ L+++  
Sbjct: 1561 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEKSSLWAQLHYVNT 1619

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464
            +                +D  E  ++N+N  L ELY+H+
Sbjct: 1620 T---------------SLDKQEAYLVNLNNVLKELYMHS 1643

[29][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
            cherry RepID=POL1_RRVC
          Length = 2367

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 2/184 (1%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK- 179
            FNEIL+R AYR L P+ E+  F   V LIVYGDDN++ + P+  S FNG AI+  + E+ 
Sbjct: 1911 FNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKEEL 1970

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPSKD 356
             +KITDG+DK +P I  +P  + +FLKR + K    G+ +APL  T+I+S L ++     
Sbjct: 1971 GIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYV----- 2025

Query: 357  KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 536
                  +   Y  +  +++    NV  +L E  LH       R+   F    P  V++  
Sbjct: 2026 ------RLQNYDWQAPLLQ----NVQGSLYEASLHGPDMH-ARIYKHFATHFPKWVEEHE 2074

Query: 537  TWAF 548
             + +
Sbjct: 2075 LYTY 2078

[30][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
           RepID=UPI0000163D09
          Length = 711

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
 Frame = +3

Query: 3   FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNEIL+RY YRK+      P+P    F + V L+ YGDDNLISV+   AS FNG  ++  
Sbjct: 354 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE 413

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           +A+  V ITDG DK +PT+E +     DFLKR F KL+  +  +P + +++++ L+++  
Sbjct: 414 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYVNT 472

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464
           +                +D  E  ++N+N  L ELY+++
Sbjct: 473 T---------------NLDKQEAYLVNLNNVLKELYMYS 496

[31][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
          Length = 1858

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEIL+RY YRK+      P+P    F + V L+ YGDDNLISV+   AS FNG  ++  
Sbjct: 1501 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE 1560

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            +A+  V ITDG DK +PT+E +     DFLKR F KL+  +  +P + +++++ L+++  
Sbjct: 1561 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYVNT 1619

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464
            +                +D  E  ++N+N  L ELY+++
Sbjct: 1620 T---------------NLDKQEAYLVNLNNVLKELYMYS 1643

[32][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
          Length = 1851

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNE+LIRY+Y KL     AP      F+  + L VYGDDNLISV      +F+G  ++  
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA   + ITDG DK + T++ +   E DFLKR F ++   +  AP D  +++S L++++ 
Sbjct: 1554 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
                             +++ E  ++N+   L ELYLH+  +E +++R   ++R+  L  
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657

Query: 528  -QFRTWAFCESFHSSQQ 575
                T A  E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674

[33][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
          Length = 1851

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNE+LIRY+Y KL     AP      F+  + L VYGDDNLISV      +F+G  ++  
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA   + ITDG DK + T++ +   E DFLKR F ++   +  AP D  +++S L++++ 
Sbjct: 1554 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
                             +++ E  ++N+   L ELYLH+  +  Q +R   ++R+  L  
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHSPEEACQ-LRRRALSRIEWLQK 1657

Query: 528  -QFRTWAFCESFHSSQQ 575
                T A  E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674

[34][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
           virus RepID=POL1_APMV
          Length = 729

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPK----PEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNE+L+RY ++K+  +    P +C  F   +  +VYGDDNLISV+P     FNG+ ++  
Sbjct: 378 FNELLVRYCFKKIMREGGATPLECSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKLLKEC 437

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           +A   V ITDG DK  PT+E +P  + DFLKR F++    V  AP + +++++ L++++ 
Sbjct: 438 MARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWDAPEERSSLYTQLHYVST 497

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524
                        Y+G +         VNV + ELY+H+  KE   +R   +  LP L  
Sbjct: 498 KMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKEASDLRRKALRDLPWLSR 541

Query: 525 DQFRTWAFCESFHSSQQ 575
            +  T    ++F++ Q+
Sbjct: 542 SKIGTMENVQAFYAMQR 558

[35][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
           RepID=UPI0000163CF4
          Length = 710

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3   FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNE+LIRY+Y KL     AP      F+  + L VYGDDNLISV      +F+G  ++  
Sbjct: 353 FNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 412

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           LA   + ITDG DK + T++ +   E DFLKR F ++   +  AP D  +++S L++++ 
Sbjct: 413 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 471

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
                            +++ E  ++N+   L ELYLH+  +E +R+R   ++ +  L  
Sbjct: 472 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWLQK 516

Query: 528 -QFRTWAFCESFHSSQQ 575
               T A  E FHS Q+
Sbjct: 517 ADVPTIAQIEEFHSMQR 533

[36][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
          Length = 1851

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNE+LIRY+Y KL     AP      F+  V L VYGDDNLISV      +F+G  ++  
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA   + ITDG DK + T++ +   + DFLKR F ++   +  AP D  +++S L++++ 
Sbjct: 1554 LAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
                             +++ E  ++N+   L ELYLH+  +E +++R   ++R+  L  
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657

Query: 528  -QFRTWAFCESFHSSQQ 575
                T A  E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674

[37][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
            Kentucky G7) RepID=POL1_BPMV
          Length = 1850

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNE+LIRY+Y KL     AP      F+  + L VYGDDNLISV      +F+G  ++  
Sbjct: 1493 FNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1552

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA   + ITDG DK + T++ +   E DFLKR F ++   +  AP D  +++S L++++ 
Sbjct: 1553 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1611

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
                             +++ E  ++N+   L ELYLH+  +E +R+R   ++ +  L  
Sbjct: 1612 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWLQK 1656

Query: 528  -QFRTWAFCESFHSSQQ 575
                T A  E FHS Q+
Sbjct: 1657 ADVPTIAQIEEFHSMQR 1673

[38][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
          Length = 1851

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNE+LIRY+Y KL     AP      F+  V L VYGDDN ISV      +F+G  ++  
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNFISVHEYVKPYFSGSKLKSF 1553

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA   + ITDG DK + T++ +   + DFLKR F ++   +  AP D  +++S L++++ 
Sbjct: 1554 LAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
                             +++ E  ++N+   L ELYLH+  +E +++R   ++R+  L  
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657

Query: 528  -QFRTWAFCESFHSSQQ 575
                T A  E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674

[39][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
           RepID=UPI0000163D14
          Length = 711

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
 Frame = +3

Query: 3   FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNEILIRY Y+KL     AP+     F + + L+ YGDDNLISV      +F+G+ ++ +
Sbjct: 353 FNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLKQS 412

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           LA+  V ITDG DK +  +  +   E DFLKR F++  + +  AP D  +++S L+++  
Sbjct: 413 LAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV-- 470

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 485
                +  +K   Y          + NV   L ELY+H+  ++ EF+R
Sbjct: 471 ---NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 505

[40][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
            RepID=POL1_CPMV
          Length = 1866

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY Y+KL     AP+     F + + L+ YGDDNLISV      +F+G+ ++ +
Sbjct: 1508 FNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLKQS 1567

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA+  V ITDG DK +  +  +   E DFLKR F++  + +  AP D  +++S L+++  
Sbjct: 1568 LAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV-- 1625

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 485
                 +  +K   Y          + NV   L ELY+H+  ++ EF+R
Sbjct: 1626 ---NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 1660

[41][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
           RepID=UPI0000163D04
          Length = 713

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
 Frame = +3

Query: 3   FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNEIL+RY Y+ L     AP      F+  + ++ YGDDNLISV      +F+G  ++  
Sbjct: 354 FNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQA 413

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           +A   + ITDG DK + T+E +   + DFLKR FLK  + +  AP +  ++++ L+++  
Sbjct: 414 MARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNV 473

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
           +    +   + +  +  V+V+ EL ++    ++E
Sbjct: 474 N----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 503

[42][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
          Length = 1853

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAYR         R  F   V L+VYGDDNLISV+ + +S FNGE +       
Sbjct: 1503 NEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFFLRL 1562

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             + +TDG DK    I  +   + DFLKR F  L  G    P+   +++  L+++   K  
Sbjct: 1563 SITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAKK-- 1620

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 521
                         +++ +  V N+N  L EL+LH  S+E   +R   V  L  L
Sbjct: 1621 -------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTLKWL 1660

[43][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
            RepID=POL1_RCMV
          Length = 1864

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEIL+RY Y+ L     AP      F+  + ++ YGDDNLISV      +F+G  ++  
Sbjct: 1505 FNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQA 1564

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            +A   + ITDG DK + T+E +   + DFLKR FLK  + +  AP +  ++++ L+++  
Sbjct: 1565 MARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNV 1624

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
            +    +   + +  +  V+V+ EL ++    ++E
Sbjct: 1625 N----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 1654

[44][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
           RepID=UPI000180D482
          Length = 474

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
           NEIL++YAYR         R  F   V L+VYGDDNLISV+ + +S FNGE +       
Sbjct: 318 NEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFFLRL 377

Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            + +TDG DK    I  +   + DFLKR F  L  G    P+   +++  L+++   K  
Sbjct: 378 SITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAKK-- 435

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARL 512
                        +++ +  V N+N  L EL+LH  S+E   +R   V  L
Sbjct: 436 -------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTL 472

[45][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
           RepID=Q06RG7_9SECO
          Length = 396

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
 Frame = +3

Query: 3   FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNEILIRY+++ +  K +        F + V ++ YGDDNL+SV+     +F+G+ ++  
Sbjct: 155 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 214

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
           LA+ KV ITDG DK +P +  +   + DFLKR F K   G+   AP +  ++++ L+++ 
Sbjct: 215 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 274

Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515
            +  + H   K +     V+V+ EL +   N   AL +       K  QRV     + LP
Sbjct: 275 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 323

Query: 516 LLVDQFRTWAFC 551
            +      +A C
Sbjct: 324 TVAQIEEWYATC 335

[46][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
          Length = 1857

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY+++ +  K +        F + V ++ YGDDNL+SV+     +F+G+ ++  
Sbjct: 1499 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 1558

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
            LA+ KV ITDG DK +P +  +   + DFLKR F K   G+   AP +  ++++ L+++ 
Sbjct: 1559 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 1618

Query: 345  PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515
             +  + H   K +     V+V+ EL +   N   AL +       K  QRV     + LP
Sbjct: 1619 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 1667

Query: 516  LLVDQFRTWAFC 551
             +      +A C
Sbjct: 1668 TVAQIEEWYATC 1679

[47][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
          Length = 1860

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY+++ +  K +        F + V ++ YGDDNL+SV+     +F+G+ ++  
Sbjct: 1502 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 1561

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
            LA+ KV ITDG DK +P +  +   + DFLKR F K   G+   AP +  ++++ L+++ 
Sbjct: 1562 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 1621

Query: 345  PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515
             +  + H   K +     V+V+ EL +   N   AL +       K  QRV     + LP
Sbjct: 1622 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 1670

Query: 516  LLVDQFRTWAFC 551
             +      +A C
Sbjct: 1671 TVAQIEEWYATC 1682

[48][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
           RepID=UPI0000163CFC
          Length = 712

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
 Frame = +3

Query: 3   FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNE+L+RY+Y K+      P      F   V ++ YGDDNL+SV  +    F+G  ++  
Sbjct: 352 FNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEF 411

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           L    + ITDG DK +P +  +   + DFLKR F K    V   P +  ++++ L+++T 
Sbjct: 412 LKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTT 471

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
           +  + H               E  ++NV   + ELYLH D +E   +R   +  +  L +
Sbjct: 472 NNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELRRKAIQNVDFLKE 515

Query: 528 ---QFRTWAFCESFHSSQQ 575
                 T A  + F++ Q+
Sbjct: 516 NPKDLPTMAAIKEFYNMQR 534

[49][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
          Length = 1853

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YA+R         R  F   V L+VYGDDNLISV+ + ++ FNGE +     + 
Sbjct: 1503 NEILVKYAFRMCFADNPMVRESFDTHVSLVVYGDDNLISVSDAISAKFNGEFLVDFFLKL 1562

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             + +TDG DK    I  +   + DFLKR F  L  G    P+   +++  L+++   K  
Sbjct: 1563 SITVTDGVDKTKKGISFRRLADCDFLKRGFKNLPDGEWIGPMSRESLWPQLHFVRAKK-- 1620

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLH--NDSKEFQR 485
                         +++ +  V N+N  L EL+LH  N++ E +R
Sbjct: 1621 -------------LEMADAYVANLNNILRELWLHSANEATELRR 1651

[50][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
            (strain DG) RepID=POL1_CPSMV
          Length = 1858

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNE+L+RY+Y K+      P      F   V ++ YGDDNL+SV  +    F+G  ++  
Sbjct: 1498 FNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEF 1557

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            L    + ITDG DK +P +  +   + DFLKR F K    V   P +  ++++ L+++T 
Sbjct: 1558 LKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTT 1617

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
            +  + H               E  ++NV   + ELYLH D +E   +R   +  +  L +
Sbjct: 1618 NNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELRRKAIQNVDFLKE 1661

Query: 528  ---QFRTWAFCESFHSSQQ 575
                  T A  + F++ Q+
Sbjct: 1662 NPKDLPTMAAIKEFYNMQR 1680

[51][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
           RepID=Q2TCK2_9SECO
          Length = 709

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3   FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNEILIRY+++ +      P      F + V ++VYGDDNL+SV+     +F+G+ ++  
Sbjct: 356 FNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEF 415

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           LA  ++ ITDG DK +P ++ +   + DFLKR F                    LYW  P
Sbjct: 416 LATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWDAP 459

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524
            + +    Q     +  ++  E    N+   L EL++  D KE   +R   + R+  LV 
Sbjct: 460 EEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWLVP 518

Query: 525 DQFRTWAFCESFHSSQQ 575
              +T A  E++++  +
Sbjct: 519 SDLQTVAQIEAWYAGNR 535

[52][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
          Length = 1860

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY+++ +      P      F + V ++ YGDDNL+SV+     +F+G+ ++  
Sbjct: 1502 FNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEF 1561

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
            LA+ KV ITDG DK +P +  +   + DFLKR F K  +G    +P +  ++++ L+++ 
Sbjct: 1562 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYIN 1621

Query: 345  PSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVARLP 515
             +  + H   K +     V+V+ EL    +N   AL +       K  QRV     + LP
Sbjct: 1622 VTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSDLP 1670

Query: 516  LLVDQFRTWAFC 551
             +    + +A C
Sbjct: 1671 TVAQIEKWYASC 1682

[53][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
          Length = 1853

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
 Frame = +3

Query: 3    FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY+++ +      P      F + V ++VYGDDNL+SV+     +F+G+ ++  
Sbjct: 1500 FNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEF 1559

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
            LA  ++ ITDG DK +P ++ +   + DFLKR F                    LYW  P
Sbjct: 1560 LATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWDAP 1603

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524
             + +    Q     +  ++  E    N+   L EL++  D KE   +R   + R+  LV 
Sbjct: 1604 EEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWLVP 1662

Query: 525  DQFRTWAFCESFHSSQQ 575
               +T A  E++++  +
Sbjct: 1663 SDLQTVAQIEAWYAGNR 1679

[54][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
           virus RepID=B2KL92_9SECO
          Length = 712

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
 Frame = +3

Query: 3   FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           FNEILIRY+++ +      P      F + V ++ YGDDNL+SV+     +F+G+ ++  
Sbjct: 354 FNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEF 413

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
           LA+ KV ITDG DK +P +  +   + DFLKR F K  +G    +P +  ++++ L+++ 
Sbjct: 414 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYIN 473

Query: 345 PSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVARLP 515
            +  + H   K +     V+V+ EL    +N   AL +       K  QRV     + LP
Sbjct: 474 VTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSDLP 522

Query: 516 LLVDQFRTWAFC 551
            +    + +A C
Sbjct: 523 TVAQIEKWYASC 534

[55][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
           RepID=UPI0000163DDB
          Length = 697

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6   NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
           NEIL++YAY    A  P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 352 NEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 411

Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            +K+TDG DK    IE +     DFLKR F     G  + P+   +++  L+++   K  
Sbjct: 412 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAKK-- 469

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                        +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 470 -------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 499

[56][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
          Length = 1869

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY    A  P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 1524 NEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 1583

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  + P+   +++  L+++   K  
Sbjct: 1584 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAKK-- 1641

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                         +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 1642 -------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 1671

[57][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
          Length = 1870

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 3/192 (1%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVSFMEGL 1584

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL-VDQFR 536
                         +++ E  + N N  L EL+LH D KE +  R+  +  L  +  +Q  
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLH-DVKEAEEFRNKVLRNLRWIGHEQLL 1688

Query: 537  TWAFCESFHSSQ 572
                   FHS Q
Sbjct: 1689 NMQQLAVFHSEQ 1700

[58][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
           RepID=UPI0000163DD4
          Length = 699

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6   NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
           NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 354 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 413

Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 414 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 471

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                        +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 472 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 501

[59][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
          Length = 1870

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1584

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                         +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672

[60][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
          Length = 1769

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 1424 NEILVKYAYWHCFEDNPNVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1483

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 1484 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1541

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                         +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 1542 -------------LEMAEAYINNCNNILRELWLHDVREAKEFR 1571

[61][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
          Length = 1870

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1584

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                         +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672

[62][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
           virus 2 RepID=B8Y619_9SECO
          Length = 594

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6   NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
           NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 249 NEILVKYAYWHCFGDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 308

Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 309 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 366

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                        +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 367 -------------LEMAEAYINNCNNILCELWLHDVKEAKEFR 396

[63][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
           RepID=UPI0000231CC7
          Length = 699

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
           NEILI+YAY K        R  F   V ++VYGDDNLISV+ + +S FNG  +   +   
Sbjct: 354 NEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL 413

Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            +K+TDG DK    IE +   + DFLKRKF +   G     +    ++  L+++   K  
Sbjct: 414 GIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKK-- 471

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473
                        V++ E  + N N  L EL+L +  K
Sbjct: 472 -------------VEMSEAYISNCNNILRELWLGSPEK 496

[64][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
          Length = 1869

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKP-EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 1524 NEILVKYAYWHCFVDNPIVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 1583

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 1584 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKLNPDGTWRSPMSKESLWPQLHYVKAKK-- 1641

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                         +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 1642 -------------LEMAEAYINNCNNILRELWLHDVIEAKEFR 1671

[65][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
          Length = 1842

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEILI+YAY K        R  F   V ++VYGDDNLISV+ + +S FNG  +   +   
Sbjct: 1497 NEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL 1556

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +   + DFLKRKF +   G     +    ++  L+++   K  
Sbjct: 1557 GIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKK-- 1614

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473
                         V++ E  + N N  L EL+L +  K
Sbjct: 1615 -------------VEMSEAYISNCNNILRELWLGSPEK 1639

[66][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
          Length = 280

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
 Frame = +3

Query: 6   NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
           NEIL++YAY       P  +  F   V ++VYGDDNLISV+ + +S F+G  +   +   
Sbjct: 130 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 189

Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
            +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 190 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 247

Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEF 479
                        +++ E  + N N  L EL+LH+  ++K+F
Sbjct: 248 -------------LEMAEAYINNCNNILRELWLHDVKEAKDF 276

[67][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
          Length = 1842

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEILI+YAY K        R  F   V + VYGDDNLISV+ + +S FNG  +   +A  
Sbjct: 1497 NEILIKYAYWKCFETESLIRDHFDTHVAMAVYGDDNLISVSEAISSRFNGNFLVNFMANL 1556

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR+F +   G     +    ++  L+++   K  
Sbjct: 1557 GIKVTDGVDKTKIGIEFRTIENCDFLKRRFKENTDGTWSGVMAEEHLWPQLHFVKAKK-- 1614

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473
                         V++ E  + N N  L EL+L +  K
Sbjct: 1615 -------------VEMSEAYISNCNNILRELWLEDPGK 1639

[68][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
          Length = 1853

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY+++ +      P      F + V ++VYGDDNL+SV+     +F+G+ ++  
Sbjct: 1500 FNEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKDF 1559

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
            LA   + ITDG DK +P ++ +   + DFLKR F   + G+   AP D  ++++ L+++ 
Sbjct: 1560 LATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF--KNRGLYWDAPEDKESLWAQLHYVN 1617

Query: 345  PSKDKFHTHQKASQYSGEVDVIEELVL 425
             +  + H   K +     V V+ EL +
Sbjct: 1618 ANNLEKHEAYKTNL----VTVLRELFM 1640

[69][TOP]
>UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic
           stunt virus RepID=B4ZF30_CNSV
          Length = 73

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 36/68 (52%), Positives = 46/68 (67%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
           NEIL+RY ++ L   P++  F   V L+VYGDDNL+S     A +FNGE I+ TL +K V
Sbjct: 6   NEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKNV 65

Query: 186 KITDGSDK 209
            ITDGSDK
Sbjct: 66  TITDGSDK 73

[70][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
          Length = 1853

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
 Frame = +3

Query: 3    FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            FNEILIRY+++ +      P      F + V ++VYGDDNL+SV      +F+G+ ++  
Sbjct: 1500 FNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKRLKEF 1559

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
            LA   + ITDG DK +P ++ +   + DFLKR F   + G+   AP +  ++++ L+++ 
Sbjct: 1560 LATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF--KNRGLYWDAPEEKESLWAQLHYVN 1617

Query: 345  PSKDKFHTHQKASQYSGEVDVIEELVL 425
             +  + H   K +     V V+ EL +
Sbjct: 1618 ANNLEKHEAYKTNL----VTVLRELFM 1640

[71][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
          Length = 1870

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
 Frame = +3

Query: 6    NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
            NEIL++YAY       P  +  F   V +  YGDDNLISV+ + +S F+G  +   +   
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMEEYGDDNLISVSDAISSKFDGSFLVSFIEGL 1584

Query: 180  KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
             +K+TDG DK    IE +     DFLKR F     G  ++P+   +++  L+++   K  
Sbjct: 1585 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642

Query: 360  FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
                         +++ E  + N N  L EL+LH+  ++KEF+
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672

[72][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
            RepID=Q9IJX4_CRPV
          Length = 1771

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
 Frame = +3

Query: 3    FNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            +N +++R  +    RKLAP+ +  + F++ V +I YGDDN ++++     WFN   I   
Sbjct: 1583 YNSMIMRIVWILLARKLAPEMQSMKKFRENVSMISYGDDNCLNISDRVVEWFNQITISEQ 1642

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLYW 338
            + E K + TD   K    ++     E+ FLK++F+   +L   V  APL    I+  L W
Sbjct: 1643 MKEIKHEYTD-EGKTGDMVKFPSLSEIHFLKKRFVFSHQLQRTV--APLQKDVIYEMLNW 1699

Query: 339  LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 494
                                +D  E L++N+N A  E+  H  S E+Q++RS
Sbjct: 1700 T----------------RNTIDPNEILMMNINTAFREIVYHGKS-EYQKLRS 1734

[73][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
           RepID=Q3YC01_9SECO
          Length = 795

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKP------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           NE  +R+A++++           +    + V   VYGDDNL+SV+   +S +N  +I   
Sbjct: 457 NEFFLRFAWKRIVRASLGEAFVHRSIMDREVHFAVYGDDNLVSVSDKYSSLYNLVSISSF 516

Query: 168 LAEKKVKITDG---SDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 338
           L E+ V + +G    ++D P   P P    DFLKR+F+   +G + APLD +++    +W
Sbjct: 517 LRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFLKRRFVLGSSGRVLAPLDKSSLLGCAHW 575

Query: 339 LTPSKD 356
           +  S+D
Sbjct: 576 VRKSQD 581

[74][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
           RepID=UPI000043F357
          Length = 707

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           N   I ++Y KL  + E         F+Q V    YGDDNL+SV       FN   I   
Sbjct: 362 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADL 421

Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
           LAE  V + +G+DK+   + P  P  ++DFLKRKF+    G + APL+   I   L+W+
Sbjct: 422 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 479

[75][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
          Length = 2250

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            N   I ++Y KL  + E         F+Q V    YGDDNL+SV       FN   I   
Sbjct: 1905 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADL 1964

Query: 168  LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
            LAE  V + +G+DK+   + P  P  ++DFLKRKF+    G + APL+   I   L+W+
Sbjct: 1965 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 2022

[76][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
          Length = 2235

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            N   I ++Y KL  + E         F+Q V    YGDDNL+SV       FN   I   
Sbjct: 1890 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITERFNLVKIADL 1949

Query: 168  LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
            LAE  V + +G+DK+   + P  P  ++DFLKRKF+    G + APL+   I   L+W+
Sbjct: 1950 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 2007

[77][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
           RepID=Q769F2_SDV
          Length = 374

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
 Frame = +3

Query: 6   NEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           NE  +++++  +      A +   C F +   + VYGDDN +SVA   AS +N + I   
Sbjct: 52  NEFYLKWSWMGIMREAGYAKEASLCAFHEATEISVYGDDNFVSVATPVASLYNLKTISEF 111

Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFL-KLDTGVIQAPLDMTAIFSSLYWL 341
           L+   VK+ DG+   + TI+P  P  E+DFLKRKF+    +  I  PL+  +I   L+++
Sbjct: 112 LSRVGVKLGDGA--KSGTIKPFIPLEEVDFLKRKFVADSKSTAILCPLNKRSIEERLFYV 169

Query: 342 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 461
                            G  D I  L LN+  AL E + H
Sbjct: 170 ----------------RGGQDEIAALELNIATALCEAFFH 193

[78][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
           RepID=UPI0000164A53
          Length = 709

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
 Frame = +3

Query: 6   NEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           N   + +AY KL + +  K       F+  V   VYGDDNLISV  +    FN   I   
Sbjct: 362 NSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNL 421

Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
           L E  V + +G+DK+   + P  P  ++DFLKR+F  L  G I APL+   I   L+W+
Sbjct: 422 LLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLHWV 479

[79][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
            RepID=Q9JGP2_9SECO
          Length = 2079

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
 Frame = +3

Query: 6    NEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            N   + +AY KL + +  K       F+  V   VYGDDNLISV  +    FN   I   
Sbjct: 1732 NSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNL 1791

Query: 168  LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
            L E  V + +G+DK+   + P  P  ++DFLKR+F  L  G I APL+   I   L+W+
Sbjct: 1792 LLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLHWV 1849

[80][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
          Length = 2158

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161
            NE  +RYA+  L  +P         K      + + VYGDDNL++V P    W+   AI 
Sbjct: 1458 NEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELQWYTLPAIA 1516

Query: 162  VTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335
              L    V I +G DK+      K     EL FL R F +   G +QAPL   +I   +Y
Sbjct: 1517 QELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMY 1576

Query: 336  WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
            W+ PS          +   T  + + + G   V E+LV +V  AL E
Sbjct: 1577 WIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622

[81][TOP]
>UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic
           sadwavirus RepID=A4UVR7_SDV
          Length = 319

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
 Frame = +3

Query: 60  CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KP 236
           C F +   + +YGDDN +SVA + AS +N E I   L+   VK+ DG+   + TI+P  P
Sbjct: 21  CAFHEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIP 78

Query: 237 FWELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVI 410
             E+DFLKR+F+  D+G   I  PL   +I   L+++                 G  D +
Sbjct: 79  LEEVDFLKRQFI-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDEL 121

Query: 411 EELVLNVNVALMELYLH 461
             L LNV  AL E + H
Sbjct: 122 AALELNVATALCEAFFH 138

[82][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
          Length = 2158

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161
            NE  +RYA+  L  +P         K      + + VYGDDNL++V P    W+   AI 
Sbjct: 1458 NEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELHWYTLPAIA 1516

Query: 162  VTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335
              L    V I +G DK+      K     EL FL R F +   G +QAPL   +I   +Y
Sbjct: 1517 QELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMY 1576

Query: 336  WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
            W+ PS          +   T  + + + G   V E+LV +V  AL E
Sbjct: 1577 WIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622

[83][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
          Length = 1759

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
 Frame = +3

Query: 3    FNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
            +N I++R ++     K  P+ +  + F + V LI YGDDN++++      WFN   I   
Sbjct: 1571 YNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQINISEV 1630

Query: 168  LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLYW 338
            + E + + TD + K    ++ +   ++ FLKRKF    +L   V  APL +  I+  L W
Sbjct: 1631 MTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKFRFSPELQRHV--APLKIEVIYEMLNW 1687

Query: 339  LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVA 506
               S                +D  E L+ N+  A  E+  H   +E+ ++RS  +A
Sbjct: 1688 SRRS----------------IDPDEILMSNIETAFREVVYHG-KEEYDKLRSAVLA 1726

[84][TOP]
>UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic
           sadwavirus RepID=A4UVR5_SDV
          Length = 319

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
 Frame = +3

Query: 66  FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242
           F +   + +YGDDN +SVA + AS +N E I   L+   VK+ DG+   + TI+P  P  
Sbjct: 23  FYEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIPLE 80

Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416
           E+DFLKR+F+  D+G   I  PL   +I   L+++                 G  D +  
Sbjct: 81  EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAA 123

Query: 417 LVLNVNVALMELYLH 461
           L LNV  AL E + H
Sbjct: 124 LELNVATALCEAFFH 138

[85][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
          Length = 2155

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161
            NE  +RYA+  L  +P         K      + + VYGDDNL++V P    W++   I 
Sbjct: 1461 NEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGDDNLVAV-PLHLQWYSLPNIA 1519

Query: 162  VTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335
              L    V I +G DK  D   ++ +   EL FL R F +   G   APL   +I   +Y
Sbjct: 1520 QELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPMY 1579

Query: 336  WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
            W+ P+          +   T  + + + G+V   E+LV +V  AL E
Sbjct: 1580 WIRPAPGCPDAQAMMENVETGIREAFHHGQV-AYEKLVADVQEALNE 1625

[86][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
          Length = 2151

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 158
            NE  +RYA+  L  +P         +   F Q + + VYGDDNL++V P    W++   I
Sbjct: 1459 NEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSLPNI 1516

Query: 159  RVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 332
               L    V I +G DK  D   ++ +   EL FL R F +   G   APL   +I   +
Sbjct: 1517 AHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPM 1576

Query: 333  YWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
            YW+ P+          +   T  + + + G V   ++LVL+V  AL E
Sbjct: 1577 YWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVLDVQTALDE 1623

[87][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
            RepID=A7KCA2_9VIRU
          Length = 1614

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
            N + +RY Y  L P+     F+  V L+ YGDDN++SV+  C  WFN  +I  T A   +
Sbjct: 1302 NSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC-DWFNHTSISETFATLNI 1360

Query: 186  KITDGSDKDAPTIEPKPFWELDFLKRKFLKLD-TGVIQAPLDMTAIFSSLYWLTPSK 353
              T  +DK++ ++      +  FLKR +   D  G   APL+  +I  SL   T SK
Sbjct: 1361 VYT-MADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEEESIEKSLMVWTRSK 1416

[88][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
            RepID=A0N0G3_9VIRU
          Length = 1943

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 158
            NE  +RYA+  L  +P         +   F Q + + VYGDDNL++V P    W++   I
Sbjct: 1251 NEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSLPNI 1308

Query: 159  RVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 332
               L    V I +G DK  D   ++ +   EL FL R F +   G   APL   +I   +
Sbjct: 1309 AHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPM 1368

Query: 333  YWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
            YW+ P+          +   T  + + + G V   ++LV +V  AL E
Sbjct: 1369 YWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVSDVQTALDE 1415

[89][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
           RepID=UPI0000164A61
          Length = 694

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170
           N+  + +A+RK+  + +      R  ++ C   VYGDDN++S +      +N   I   L
Sbjct: 357 NQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAEL 416

Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 350
               V ++DG  K    ++   F ELDFLKR+++         PL  +AI   L+W+  S
Sbjct: 417 KTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSS 475

Query: 351 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 491
           +D                 +E L  N   ALME + H  D   F R R
Sbjct: 476 EDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 507

[90][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
          Length = 1915

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
 Frame = +3

Query: 6    NEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170
            N+  + +A+RK+  + +      R  ++ C   VYGDDN++S +      +N   I   L
Sbjct: 1578 NQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAEL 1637

Query: 171  AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 350
                V ++DG  K    ++   F ELDFLKR+++         PL  +AI   L+W+  S
Sbjct: 1638 KTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSS 1696

Query: 351  KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 491
            +D                 +E L  N   ALME + H  D   F R R
Sbjct: 1697 EDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 1728

[91][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
          Length = 2163

 Score = 54.7 bits (130), Expect = 5e-06
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
 Frame = +3

Query: 6    NEILIRYAYRKL----APKPEKCRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170
            N+  + +A+RK+    +P     R  +T C   VYGDDN++S + +    +N   I   L
Sbjct: 1639 NQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVVSFSLAVRDMYNLCTIADEL 1698

Query: 171  AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTG-VIQAPLDMTAIFSSLYWLTP 347
                V ++DG  K    I+   F +LDFLKR++ +L+ G   + PLD  AI   L+W+  
Sbjct: 1699 KTIGVTLSDGK-KTGVLIKWTGFKDLDFLKRRW-ELEPGHGFKCPLDKMAIEERLFWVRK 1756

Query: 348  SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 461
            S+D                 +E L  N   ALME + H
Sbjct: 1757 SEDN----------------MESLDDNCYSALMEAFHH 1778

[92][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
           RepID=UPI0000164A59
          Length = 682

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
 Frame = +3

Query: 66  FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242
           F +   + +YGDDN +SVA   AS +N   I   L    VK+ DG+     TI+P  P  
Sbjct: 386 FHEATEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLE 443

Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416
           E+DFLKR+F+  D+G   I  PL   +I   L+++                 G  D I  
Sbjct: 444 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAA 486

Query: 417 LVLNVNVALMELYLH 461
           L LN+  AL E + H
Sbjct: 487 LELNIATALCEAFFH 501

[93][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
          Length = 2081

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
 Frame = +3

Query: 66   FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242
            F +   + +YGDDN +SVA   AS +N   I   L    VK+ DG+     TI+P  P  
Sbjct: 1785 FHEATEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLE 1842

Query: 243  ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416
            E+DFLKR+F+  D+G   I  PL   +I   L+++                 G  D I  
Sbjct: 1843 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAA 1885

Query: 417  LVLNVNVALMELYLH 461
            L LN+  AL E + H
Sbjct: 1886 LELNIATALCEAFFH 1900

[94][TOP]
>UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
           RNA virus RepID=B3F388_9VIRU
          Length = 139

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 27/63 (42%), Positives = 38/63 (60%)
 Frame = +3

Query: 6   NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
           N + +RYAY  L PK E   F++ V L+ YGDDN++SV+P+ A W+N  AI    A   +
Sbjct: 73  NSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWYNHTAIAAAFATMDI 131

Query: 186 KIT 194
             T
Sbjct: 132 TYT 134

[95][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling
           virus RepID=Q9YZ97_SDV
          Length = 872

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
 Frame = +3

Query: 6   NEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
           NE  +++++  L      A +     F +   + +YGDDN +SVA   AS +N + I   
Sbjct: 549 NEFYLKWSWMGLMKEAGYAKEASLYAFHEATEISLYGDDNFVSVATPVASLYNLKTISEF 608

Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
           L    VK+ DG+ K   T    P  E+DFLKR+F+        A    TAI      L P
Sbjct: 609 LRRIGVKLGDGA-KTGITKPFIPLEEVDFLKRQFV--------ADAGSTAI------LCP 653

Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQR 485
            K K    ++     G  D +  L LN+  AL E + H   KE+ R
Sbjct: 654 LK-KISIEERLFYVKGGQDELAALELNMATALCEAFFH--GKEYFR 696