[UP]
[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 319 bits (818), Expect = 8e-86
Identities = 153/191 (80%), Positives = 167/191 (87%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 355 FNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 414
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 415 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 474
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
H QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTW
Sbjct: 475 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 534
Query: 543 AFCESFHSSQQ 575
AFCE+FHS+QQ
Sbjct: 535 AFCEAFHSAQQ 545
[2][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 319 bits (818), Expect = 8e-86
Identities = 150/191 (78%), Positives = 167/191 (87%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 355 FNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 414
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 415 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 474
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
H Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFRTW
Sbjct: 475 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 534
Query: 543 AFCESFHSSQQ 575
AFCE+FHS+QQ
Sbjct: 535 AFCEAFHSAQQ 545
[3][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 319 bits (818), Expect = 8e-86
Identities = 153/191 (80%), Positives = 167/191 (87%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 1797 FNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 1856
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 1857 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 1916
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
H QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTW
Sbjct: 1917 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 1976
Query: 543 AFCESFHSSQQ 575
AFCE+FHS+QQ
Sbjct: 1977 AFCEAFHSAQQ 1987
[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 319 bits (818), Expect = 8e-86
Identities = 150/191 (78%), Positives = 167/191 (87%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 1795 FNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 1854
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
VKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KF
Sbjct: 1855 VKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKF 1914
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
H Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFRTW
Sbjct: 1915 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 1974
Query: 543 AFCESFHSSQQ 575
AFCE+FHS+QQ
Sbjct: 1975 AFCEAFHSAQQ 1985
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 286 bits (732), Expect = 8e-76
Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAEK+
Sbjct: 353 FNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKR 412
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K K
Sbjct: 413 IKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSK 472
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRT 539
F +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRT
Sbjct: 473 FALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRT 532
Query: 540 WAFCESFHSSQQ 575
WAFCE+FHS+QQ
Sbjct: 533 WAFCEAFHSAQQ 544
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 286 bits (732), Expect = 8e-76
Identities = 139/192 (72%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAEK+
Sbjct: 1779 FNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAEKR 1838
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K K
Sbjct: 1839 IKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSK 1898
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRT 539
F +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRT
Sbjct: 1899 FALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRT 1958
Query: 540 WAFCESFHSSQQ 575
WAFCE+FHS+QQ
Sbjct: 1959 WAFCEAFHSAQQ 1970
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 195 bits (495), Expect = 2e-48
Identities = 102/191 (53%), Positives = 130/191 (68%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +K
Sbjct: 363 FNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKN 422
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K
Sbjct: 423 VTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKM 482
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TW
Sbjct: 483 PKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTW 541
Query: 543 AFCESFHSSQQ 575
A E+FH S+Q
Sbjct: 542 ADREAFHMSKQ 552
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 195 bits (495), Expect = 2e-48
Identities = 102/191 (53%), Positives = 130/191 (68%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +K
Sbjct: 1853 FNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKN 1912
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K
Sbjct: 1913 VTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKM 1972
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TW
Sbjct: 1973 PKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTW 2031
Query: 543 AFCESFHSSQQ 575
A E+FH S+Q
Sbjct: 2032 ADREAFHMSKQ 2042
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 167 bits (424), Expect = 4e-40
Identities = 89/190 (46%), Positives = 113/190 (59%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LIRY YR P+P F Q VCLIVYGDDNLISV P +FNG+ I+ LA+ K
Sbjct: 630 FNEMLIRYVYRVTVPRPLVNNFNQEVCLIVYGDDNLISVKPDTMKYFNGDRIKEVLAKFK 689
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK++P + KP +LDFLKR F G + APLD+ AIFSSLY++ P
Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP----- 744
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ + + L LN VAL ELYLHND ++F VR+F+V ++ W
Sbjct: 745 -----------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQW 793
Query: 543 AFCESFHSSQ 572
C +FH Q
Sbjct: 794 RHCAAFHDEQ 803
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 167 bits (423), Expect = 5e-40
Identities = 88/190 (46%), Positives = 115/190 (60%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+ K
Sbjct: 356 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 415
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 416 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 470
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++ W
Sbjct: 471 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 519
Query: 543 AFCESFHSSQ 572
C SFH Q
Sbjct: 520 RHCASFHDEQ 529
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 167 bits (423), Expect = 5e-40
Identities = 88/190 (46%), Positives = 115/190 (60%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+ K
Sbjct: 630 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 689
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++ W
Sbjct: 745 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 793
Query: 543 AFCESFHSSQ 572
C SFH Q
Sbjct: 794 RHCASFHDEQ 803
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 167 bits (423), Expect = 5e-40
Identities = 88/190 (46%), Positives = 115/190 (60%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+ K
Sbjct: 1842 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYK 1901
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 1902 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 1956
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++ W
Sbjct: 1957 -----------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 2005
Query: 543 AFCESFHSSQ 572
C SFH Q
Sbjct: 2006 RHCASFHDEQ 2015
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 167 bits (422), Expect = 7e-40
Identities = 88/190 (46%), Positives = 113/190 (59%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA K
Sbjct: 630 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILARYK 689
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ +++ L LN VAL ELYLH D ++F VR+F+V ++ W
Sbjct: 745 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQW 793
Query: 543 AFCESFHSSQ 572
C SFH Q
Sbjct: 794 RHCASFHDEQ 803
[14][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 166 bits (420), Expect = 1e-39
Identities = 88/190 (46%), Positives = 113/190 (59%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA K
Sbjct: 630 FNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILANIK 689
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 690 VTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 744
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ +++ L LN VAL ELYLH D ++F VR+F+V ++ W
Sbjct: 745 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQW 793
Query: 543 AFCESFHSSQ 572
C SFH Q
Sbjct: 794 RHCASFHDEQ 803
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 162 bits (410), Expect = 2e-38
Identities = 85/190 (44%), Positives = 113/190 (59%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+LI Y YR P+ F+Q VCLIVYGDDNLIS+ P +FNGE I+ TLA+ +
Sbjct: 356 FNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKSTLAKYR 415
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
+ ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 416 ITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP----- 470
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
+ +++ L LN VAL ELYLH D ++F VR+F+V ++ W
Sbjct: 471 -----------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQW 519
Query: 543 AFCESFHSSQ 572
C SFH Q
Sbjct: 520 RHCASFHDEQ 529
[16][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 152 bits (385), Expect = 1e-35
Identities = 84/172 (48%), Positives = 105/172 (61%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRY Y+ + P PE RF+ V L+VYGDDNLI+V PS F GE I+ TLA KK
Sbjct: 1854 FNEILIRYVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLARKK 1913
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
+ ITDGSDK +P +E KP +LDFLKR FL D+G + LD T I+SSL +L
Sbjct: 1914 ITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR------ 1967
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 518
S + D I L NV AL ELY D +EF +R+F++ RLP+
Sbjct: 1968 ---------SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPM 2010
[17][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 151 bits (381), Expect = 4e-35
Identities = 83/191 (43%), Positives = 111/191 (58%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEIL+R Y+ + P + F + V L+VYGDDNLI+V PS FNG+ I+ T+A+ +
Sbjct: 1551 FNEILVRMVYKTVVPGVPRNHFNEYVTLLVYGDDNLIAVDPSILEVFNGDVIKKTMAKWR 1610
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK +PT+ KP LDFLKR F D G + APLD TAI+SSL+W+
Sbjct: 1611 VTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ-- 1668
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
DV+ L N AL+E++ H D EF +RSF+V+++P D TW
Sbjct: 1669 -------------DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTW 1714
Query: 543 AFCESFHSSQQ 575
FH +QQ
Sbjct: 1715 DQARCFHEAQQ 1725
[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 140 bits (354), Expect = 5e-32
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 1/192 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
F E+L+RY ++K+ P K F + V LI YGDDN+ +VA S +F G+A+++ +A+
Sbjct: 1806 FKELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDALKMQMAKLG 1865
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDG DK TI +P EL+FLKR F++ G+I APL+ +I SSL ++
Sbjct: 1866 VTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR------ 1919
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
S D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + T
Sbjct: 1920 ---------SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTT 1970
Query: 540 WAFCESFHSSQQ 575
W ESFH Q+
Sbjct: 1971 WFQAESFHECQK 1982
[19][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 134 bits (336), Expect = 6e-30
Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +A
Sbjct: 346 FNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLG 405
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 406 VTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR------ 459
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
S D++++LV NVN AL+ELYLH D + + VR F++ +LP + T
Sbjct: 460 ---------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTT 510
Query: 540 WAFCESFHSSQ 572
W + FH Q
Sbjct: 511 WYEAQIFHECQ 521
[20][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 134 bits (336), Expect = 6e-30
Identities = 76/191 (39%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +A
Sbjct: 1805 FNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMANLG 1864
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 1865 VTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR------ 1918
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
S D++++LV NVN AL+ELYLH D + + VR F++ +LP + T
Sbjct: 1919 ---------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTT 1969
Query: 540 WAFCESFHSSQ 572
W + FH Q
Sbjct: 1970 WYEAQIFHECQ 1980
[21][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 132 bits (333), Expect = 1e-29
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE+L+RY ++K+ P + F + V LI YGDDN+ +V+ S F G+A++ +A
Sbjct: 1807 FNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMANVG 1866
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDG DK TI +P EL+FLKR K + G+I APL+ +I SSL ++
Sbjct: 1867 VTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR------ 1920
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRT 539
S D++++LV NVN AL+EL+LH D + F VR+F++ +LP + T
Sbjct: 1921 ---------SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTT 1971
Query: 540 WAFCESFHSSQ 572
W ++FH Q
Sbjct: 1972 WYQAQTFHECQ 1982
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 129 bits (325), Expect = 1e-28
Identities = 78/190 (41%), Positives = 102/190 (53%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR LA+
Sbjct: 347 FNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVN 406
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T
Sbjct: 407 VIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSI 466
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
H L NV+ AL+ELYLH + F +R F+ R +W
Sbjct: 467 HI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSW 509
Query: 543 AFCESFHSSQ 572
+FH Q
Sbjct: 510 REAFAFHQGQ 519
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 129 bits (325), Expect = 1e-28
Identities = 78/190 (41%), Positives = 102/190 (53%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR LA+
Sbjct: 1734 FNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLADVN 1793
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T
Sbjct: 1794 VIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSI 1853
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTW 542
H L NV+ AL+ELYLH + F +R F+ R +W
Sbjct: 1854 HI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSW 1896
Query: 543 AFCESFHSSQ 572
+FH Q
Sbjct: 1897 REAFAFHQGQ 1906
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 115 bits (288), Expect = 2e-24
Identities = 67/172 (38%), Positives = 99/172 (57%), Gaps = 1/172 (0%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRY YRK+ P P F + V L+VYGDDNL+++ +F+G I+ +A
Sbjct: 1785 FNEILIRYVYRKVTPAPACNFFNKYVRLMVYGDDNLLTIKEEVIPFFDGPVIKREMASVG 1844
Query: 183 VKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKF 362
+ ITDG+DK + T+E KP L+FLKR F + G++ APLD T++++ L++L + F
Sbjct: 1845 ITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTSMYTRLFYLPLALMAF 1904
Query: 363 HTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVRSFFVARLP 515
+ NV L E+ LH N +EF RVR+F+V++ P
Sbjct: 1905 IPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRNFYVSKAP 1943
[25][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 111 bits (277), Expect = 5e-23
Identities = 53/68 (77%), Positives = 61/68 (89%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
+EILIRYAY+KLAPKP++ F +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+
Sbjct: 9 HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68
Query: 186 KITDGSDK 209
KITDGSDK
Sbjct: 69 KITDGSDK 76
[26][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 103 bits (258), Expect = 7e-21
Identities = 49/60 (81%), Positives = 54/60 (90%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKK 182
FNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 13 FNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAEKK 72
[27][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 100 bits (250), Expect = 6e-20
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 2/184 (1%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK- 179
FNEIL+R AYR L P E+ F V LIVYGDDN++ + P+ S FNG I+ + E+
Sbjct: 1910 FNEILVRCAYRSLVPDIERPFFSNNVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMKEEL 1969
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPSKD 356
+KITDG+DK +P I+ +P + +FLKR + K G+ +APL T+IFS L ++
Sbjct: 1970 GIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIFSCLRYV----- 2024
Query: 357 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 536
+ Y + +++ NV +L E LH R+ F P V++
Sbjct: 2025 ------RLQNYDWQAPLLQ----NVQGSLYEASLHGPEMH-DRIYKHFAMHFPKWVEEHE 2073
Query: 537 TWAF 548
+ +
Sbjct: 2074 LYTY 2077
[28][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 100 bits (248), Expect = 1e-19
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ A+ FNG ++
Sbjct: 1501 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVANVFNGRTLKAE 1560
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
+A+ V ITDG DK +PT+E + DFLKR F KL+ V +P + +++++ L+++
Sbjct: 1561 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEKSSLWAQLHYVNT 1619
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464
+ +D E ++N+N L ELY+H+
Sbjct: 1620 T---------------SLDKQEAYLVNLNNVLKELYMHS 1643
[29][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 99.8 bits (247), Expect = 1e-19
Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 2/184 (1%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK- 179
FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+ S FNG AI+ + E+
Sbjct: 1911 FNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKEEL 1970
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPSKD 356
+KITDG+DK +P I +P + +FLKR + K G+ +APL T+I+S L ++
Sbjct: 1971 GIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYV----- 2025
Query: 357 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 536
+ Y + +++ NV +L E LH R+ F P V++
Sbjct: 2026 ------RLQNYDWQAPLLQ----NVQGSLYEASLHGPDMH-ARIYKHFATHFPKWVEEHE 2074
Query: 537 TWAF 548
+ +
Sbjct: 2075 LYTY 2078
[30][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG ++
Sbjct: 354 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE 413
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
+A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L+++
Sbjct: 414 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYVNT 472
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464
+ +D E ++N+N L ELY+++
Sbjct: 473 T---------------NLDKQEAYLVNLNNVLKELYMYS 496
[31][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 98.6 bits (244), Expect = 3e-19
Identities = 58/159 (36%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG ++
Sbjct: 1501 FNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLKAE 1560
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
+A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L+++
Sbjct: 1561 MAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYVNT 1619
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 464
+ +D E ++N+N L ELY+++
Sbjct: 1620 T---------------NLDKQEAYLVNLNNVLKELYMYS 1643
[32][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 95.1 bits (235), Expect = 3e-18
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++
Sbjct: 1554 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+++ E ++N+ L ELYLH+ +E +++R ++R+ L
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657
Query: 528 -QFRTWAFCESFHSSQQ 575
T A E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674
[33][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 94.0 bits (232), Expect = 7e-18
Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++
Sbjct: 1554 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+++ E ++N+ L ELYLH+ + Q +R ++R+ L
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHSPEEACQ-LRRRALSRIEWLQK 1657
Query: 528 -QFRTWAFCESFHSSQQ 575
T A E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674
[34][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 94.0 bits (232), Expect = 7e-18
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPK----PEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+L+RY ++K+ + P +C F + +VYGDDNLISV+P FNG+ ++
Sbjct: 378 FNELLVRYCFKKIMREGGATPLECSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKLLKEC 437
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
+A V ITDG DK PT+E +P + DFLKR F++ V AP + +++++ L++++
Sbjct: 438 MARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWDAPEERSSLYTQLHYVST 497
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524
Y+G + VNV + ELY+H+ KE +R + LP L
Sbjct: 498 KMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKEASDLRRKALRDLPWLSR 541
Query: 525 DQFRTWAFCESFHSSQQ 575
+ T ++F++ Q+
Sbjct: 542 SKIGTMENVQAFYAMQR 558
[35][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 93.6 bits (231), Expect = 1e-17
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 353 FNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 412
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++
Sbjct: 413 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 471
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+++ E ++N+ L ELYLH+ +E +R+R ++ + L
Sbjct: 472 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWLQK 516
Query: 528 -QFRTWAFCESFHSSQQ 575
T A E FHS Q+
Sbjct: 517 ADVPTIAQIEEFHSMQR 533
[36][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 93.6 bits (231), Expect = 1e-17
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+LIRY+Y KL AP F+ V L VYGDDNLISV +F+G ++
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNLISVHEYVKPYFSGSKLKSF 1553
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L++++
Sbjct: 1554 LAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+++ E ++N+ L ELYLH+ +E +++R ++R+ L
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657
Query: 528 -QFRTWAFCESFHSSQQ 575
T A E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674
[37][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 93.6 bits (231), Expect = 1e-17
Identities = 66/197 (33%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 1493 FNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLKSF 1552
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L++++
Sbjct: 1553 LASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1611
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+++ E ++N+ L ELYLH+ +E +R+R ++ + L
Sbjct: 1612 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWLQK 1656
Query: 528 -QFRTWAFCESFHSSQQ 575
T A E FHS Q+
Sbjct: 1657 ADVPTIAQIEEFHSMQR 1673
[38][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 92.0 bits (227), Expect = 3e-17
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+LIRY+Y KL AP F+ V L VYGDDN ISV +F+G ++
Sbjct: 1494 FNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNFISVHEYVKPYFSGSKLKSF 1553
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L++++
Sbjct: 1554 LAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYVS- 1612
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+++ E ++N+ L ELYLH+ +E +++R ++R+ L
Sbjct: 1613 --------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWLQK 1657
Query: 528 -QFRTWAFCESFHSSQQ 575
T A E FHS Q+
Sbjct: 1658 ADVPTIAQIEEFHSMQR 1674
[39][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 88.2 bits (217), Expect = 4e-16
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+ ++ +
Sbjct: 353 FNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLKQS 412
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+++
Sbjct: 413 LAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV-- 470
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 485
+ +K Y + NV L ELY+H+ ++ EF+R
Sbjct: 471 ---NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 505
[40][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 88.2 bits (217), Expect = 4e-16
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+ ++ +
Sbjct: 1508 FNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLKQS 1567
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+++
Sbjct: 1568 LAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV-- 1625
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 485
+ +K Y + NV L ELY+H+ ++ EF+R
Sbjct: 1626 ---NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 1660
[41][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G ++
Sbjct: 354 FNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQA 413
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
+A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L+++
Sbjct: 414 MARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNV 473
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
+ + + + + V+V+ EL ++ ++E
Sbjct: 474 N----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 503
[42][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 83.2 bits (204), Expect = 1e-14
Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE +
Sbjct: 1503 NEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFFLRL 1562
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+ +TDG DK I + + DFLKR F L G P+ +++ L+++ K
Sbjct: 1563 SITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAKK-- 1620
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 521
+++ + V N+N L EL+LH S+E +R V L L
Sbjct: 1621 -------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTLKWL 1660
[43][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 83.2 bits (204), Expect = 1e-14
Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G ++
Sbjct: 1505 FNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLKQA 1564
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
+A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L+++
Sbjct: 1565 MARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYVNV 1624
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
+ + + + + V+V+ EL ++ ++E
Sbjct: 1625 N----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 1654
[44][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 82.8 bits (203), Expect = 2e-14
Identities = 57/171 (33%), Positives = 83/171 (48%), Gaps = 2/171 (1%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE +
Sbjct: 318 NEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFFLRL 377
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+ +TDG DK I + + DFLKR F L G P+ +++ L+++ K
Sbjct: 378 SITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAKK-- 435
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARL 512
+++ + V N+N L EL+LH S+E +R V L
Sbjct: 436 -------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTL 472
[45][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 81.6 bits (200), Expect = 4e-14
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 155 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 214
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+++
Sbjct: 215 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 274
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515
+ + H K + V+V+ EL + N AL + K QRV + LP
Sbjct: 275 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 323
Query: 516 LLVDQFRTWAFC 551
+ +A C
Sbjct: 324 TVAQIEEWYATC 335
[46][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 81.6 bits (200), Expect = 4e-14
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 1499 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 1558
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+++
Sbjct: 1559 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 1618
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515
+ + H K + V+V+ EL + N AL + K QRV + LP
Sbjct: 1619 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 1667
Query: 516 LLVDQFRTWAFC 551
+ +A C
Sbjct: 1668 TVAQIEEWYATC 1679
[47][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 81.6 bits (200), Expect = 4e-14
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 1502 FNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLKEF 1561
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L+++
Sbjct: 1562 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHYIN 1621
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVARLP 515
+ + H K + V+V+ EL + N AL + K QRV + LP
Sbjct: 1622 VTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSDLP 1670
Query: 516 LLVDQFRTWAFC 551
+ +A C
Sbjct: 1671 TVAQIEEWYATC 1682
[48][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 79.3 bits (194), Expect = 2e-13
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G ++
Sbjct: 352 FNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEF 411
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
L + ITDG DK +P + + + DFLKR F K V P + ++++ L+++T
Sbjct: 412 LKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTT 471
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+ + H E ++NV + ELYLH D +E +R + + L +
Sbjct: 472 NNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELRRKAIQNVDFLKE 515
Query: 528 ---QFRTWAFCESFHSSQQ 575
T A + F++ Q+
Sbjct: 516 NPKDLPTMAAIKEFYNMQR 534
[49][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 79.3 bits (194), Expect = 2e-13
Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YA+R R F V L+VYGDDNLISV+ + ++ FNGE + +
Sbjct: 1503 NEILVKYAFRMCFADNPMVRESFDTHVSLVVYGDDNLISVSDAISAKFNGEFLVDFFLKL 1562
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+ +TDG DK I + + DFLKR F L G P+ +++ L+++ K
Sbjct: 1563 SITVTDGVDKTKKGISFRRLADCDFLKRGFKNLPDGEWIGPMSRESLWPQLHFVRAKK-- 1620
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLH--NDSKEFQR 485
+++ + V N+N L EL+LH N++ E +R
Sbjct: 1621 -------------LEMADAYVANLNNILRELWLHSANEATELRR 1651
[50][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 79.3 bits (194), Expect = 2e-13
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G ++
Sbjct: 1498 FNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLKEF 1557
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
L + ITDG DK +P + + + DFLKR F K V P + ++++ L+++T
Sbjct: 1558 LKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYVTT 1617
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD 527
+ + H E ++NV + ELYLH D +E +R + + L +
Sbjct: 1618 NNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELRRKAIQNVDFLKE 1661
Query: 528 ---QFRTWAFCESFHSSQQ 575
T A + F++ Q+
Sbjct: 1662 NPKDLPTMAAIKEFYNMQR 1680
[51][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 79.0 bits (193), Expect = 2e-13
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++
Sbjct: 356 FNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEF 415
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA ++ ITDG DK +P ++ + + DFLKR F LYW P
Sbjct: 416 LATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWDAP 459
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524
+ + Q + ++ E N+ L EL++ D KE +R + R+ LV
Sbjct: 460 EEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWLVP 518
Query: 525 DQFRTWAFCESFHSSQQ 575
+T A E++++ +
Sbjct: 519 SDLQTVAQIEAWYAGNR 535
[52][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 79.0 bits (193), Expect = 2e-13
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 1502 FNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEF 1561
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L+++
Sbjct: 1562 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYIN 1621
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVARLP 515
+ + H K + V+V+ EL +N AL + K QRV + LP
Sbjct: 1622 VTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSDLP 1670
Query: 516 LLVDQFRTWAFC 551
+ + +A C
Sbjct: 1671 TVAQIEKWYASC 1682
[53][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 79.0 bits (193), Expect = 2e-13
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++
Sbjct: 1500 FNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKEF 1559
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
LA ++ ITDG DK +P ++ + + DFLKR F LYW P
Sbjct: 1560 LATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWDAP 1603
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLV- 524
+ + Q + ++ E N+ L EL++ D KE +R + R+ LV
Sbjct: 1604 EEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWLVP 1662
Query: 525 DQFRTWAFCESFHSSQQ 575
+T A E++++ +
Sbjct: 1663 SDLQTVAQIEAWYAGNR 1679
[54][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 79.0 bits (193), Expect = 2e-13
Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 354 FNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLKEF 413
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L+++
Sbjct: 414 LAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHYIN 473
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVARLP 515
+ + H K + V+V+ EL +N AL + K QRV + LP
Sbjct: 474 VTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSDLP 522
Query: 516 LLVDQFRTWAFC 551
+ + +A C
Sbjct: 523 TVAQIEKWYASC 534
[55][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 78.2 bits (191), Expect = 4e-13
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 352 NEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 411
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G + P+ +++ L+++ K
Sbjct: 412 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAKK-- 469
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 470 -------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 499
[56][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 78.2 bits (191), Expect = 4e-13
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1524 NEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 1583
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G + P+ +++ L+++ K
Sbjct: 1584 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAKK-- 1641
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 1642 -------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 1671
[57][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 77.8 bits (190), Expect = 6e-13
Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 3/192 (1%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVSFMEGL 1584
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL-VDQFR 536
+++ E + N N L EL+LH D KE + R+ + L + +Q
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLH-DVKEAEEFRNKVLRNLRWIGHEQLL 1688
Query: 537 TWAFCESFHSSQ 572
FHS Q
Sbjct: 1689 NMQQLAVFHSEQ 1700
[58][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 354 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 413
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 414 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 471
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 472 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 501
[59][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1584
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[60][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1424 NEILVKYAYWHCFEDNPNVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1483
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 1484 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1541
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 1542 -------------LEMAEAYINNCNNILRELWLHDVREAKEFR 1571
[61][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 1584
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 1585 GIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[62][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 77.4 bits (189), Expect = 7e-13
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 249 NEILVKYAYWHCFGDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 308
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 309 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 366
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 367 -------------LEMAEAYINNCNNILCELWLHDVKEAKEFR 396
[63][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG + +
Sbjct: 354 NEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL 413
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + + DFLKRKF + G + ++ L+++ K
Sbjct: 414 GIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKK-- 471
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473
V++ E + N N L EL+L + K
Sbjct: 472 -------------VEMSEAYISNCNNILRELWLGSPEK 496
[64][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 76.3 bits (186), Expect = 2e-12
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKP-EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1524 NEILVKYAYWHCFVDNPIVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFMEGL 1583
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 1584 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKLNPDGTWRSPMSKESLWPQLHYVKAKK-- 1641
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 1642 -------------LEMAEAYINNCNNILRELWLHDVIEAKEFR 1671
[65][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 76.3 bits (186), Expect = 2e-12
Identities = 53/158 (33%), Positives = 77/158 (48%), Gaps = 2/158 (1%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG + +
Sbjct: 1497 NEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNL 1556
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + + DFLKRKF + G + ++ L+++ K
Sbjct: 1557 GIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKK-- 1614
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473
V++ E + N N L EL+L + K
Sbjct: 1615 -------------VEMSEAYISNCNNILRELWLGSPEK 1639
[66][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 75.5 bits (184), Expect = 3e-12
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 130 NEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFMEGL 189
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 190 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 247
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEF 479
+++ E + N N L EL+LH+ ++K+F
Sbjct: 248 -------------LEMAEAYINNCNNILRELWLHDVKEAKDF 276
[67][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 75.1 bits (183), Expect = 4e-12
Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 2/158 (1%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEILI+YAY K R F V + VYGDDNLISV+ + +S FNG + +A
Sbjct: 1497 NEILIKYAYWKCFETESLIRDHFDTHVAMAVYGDDNLISVSEAISSRFNGNFLVNFMANL 1556
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR+F + G + ++ L+++ K
Sbjct: 1557 GIKVTDGVDKTKIGIEFRTIENCDFLKRRFKENTDGTWSGVMAEEHLWPQLHFVKAKK-- 1614
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 473
V++ E + N N L EL+L + K
Sbjct: 1615 -------------VEMSEAYISNCNNILRELWLEDPGK 1639
[68][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 75.1 bits (183), Expect = 4e-12
Identities = 48/147 (32%), Positives = 82/147 (55%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++
Sbjct: 1500 FNEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLKDF 1559
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA + ITDG DK +P ++ + + DFLKR F + G+ AP D ++++ L+++
Sbjct: 1560 LATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF--KNRGLYWDAPEDKESLWAQLHYVN 1617
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL 425
+ + H K + V V+ EL +
Sbjct: 1618 ANNLEKHEAYKTNL----VTVLRELFM 1640
[69][TOP]
>UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic
stunt virus RepID=B4ZF30_CNSV
Length = 73
Score = 73.2 bits (178), Expect = 1e-11
Identities = 36/68 (52%), Positives = 46/68 (67%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
NEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +K V
Sbjct: 6 NEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKKKNV 65
Query: 186 KITDGSDK 209
ITDGSDK
Sbjct: 66 TITDGSDK 73
[70][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 72.8 bits (177), Expect = 2e-11
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 6/147 (4%)
Frame = +3
Query: 3 FNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
FNEILIRY+++ + P F + V ++VYGDDNL+SV +F+G+ ++
Sbjct: 1500 FNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKRLKEF 1559
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYWLT 344
LA + ITDG DK +P ++ + + DFLKR F + G+ AP + ++++ L+++
Sbjct: 1560 LATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF--KNRGLYWDAPEEKESLWAQLHYVN 1617
Query: 345 PSKDKFHTHQKASQYSGEVDVIEELVL 425
+ + H K + V V+ EL +
Sbjct: 1618 ANNLEKHEAYKTNL----VTVLRELFM 1640
[71][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 72.4 bits (176), Expect = 2e-11
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Frame = +3
Query: 6 NEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK 179
NEIL++YAY P + F V + YGDDNLISV+ + +S F+G + +
Sbjct: 1525 NEILVKYAYWHCFEDNPSVQSNFDAHVSMEEYGDDNLISVSDAISSKFDGSFLVSFIEGL 1584
Query: 180 KVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDK 359
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++ K
Sbjct: 1585 GIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAKK-- 1642
Query: 360 FHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 482
+++ E + N N L EL+LH+ ++KEF+
Sbjct: 1643 -------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[72][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
RepID=Q9IJX4_CRPV
Length = 1771
Score = 66.2 bits (160), Expect = 2e-09
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 8/172 (4%)
Frame = +3
Query: 3 FNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
+N +++R + RKLAP+ + + F++ V +I YGDDN ++++ WFN I
Sbjct: 1583 YNSMIMRIVWILLARKLAPEMQSMKKFRENVSMISYGDDNCLNISDRVVEWFNQITISEQ 1642
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLYW 338
+ E K + TD K ++ E+ FLK++F+ +L V APL I+ L W
Sbjct: 1643 MKEIKHEYTD-EGKTGDMVKFPSLSEIHFLKKRFVFSHQLQRTV--APLQKDVIYEMLNW 1699
Query: 339 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 494
+D E L++N+N A E+ H S E+Q++RS
Sbjct: 1700 T----------------RNTIDPNEILMMNINTAFREIVYHGKS-EYQKLRS 1734
[73][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 65.5 bits (158), Expect = 3e-09
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKP------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
NE +R+A++++ + + V VYGDDNL+SV+ +S +N +I
Sbjct: 457 NEFFLRFAWKRIVRASLGEAFVHRSIMDREVHFAVYGDDNLVSVSDKYSSLYNLVSISSF 516
Query: 168 LAEKKVKITDG---SDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 338
L E+ V + +G ++D P P P DFLKR+F+ +G + APLD +++ +W
Sbjct: 517 LRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFLKRRFVLGSSGRVLAPLDKSSLLGCAHW 575
Query: 339 LTPSKD 356
+ S+D
Sbjct: 576 VRKSQD 581
[74][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
RepID=UPI000043F357
Length = 707
Score = 63.9 bits (154), Expect = 8e-09
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
N I ++Y KL + E F+Q V YGDDNL+SV FN I
Sbjct: 362 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADL 421
Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+W+
Sbjct: 422 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 479
[75][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
Length = 2250
Score = 63.9 bits (154), Expect = 8e-09
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
N I ++Y KL + E F+Q V YGDDNL+SV FN I
Sbjct: 1905 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADL 1964
Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+W+
Sbjct: 1965 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 2022
[76][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
Length = 2235
Score = 63.9 bits (154), Expect = 8e-09
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
N I ++Y KL + E F+Q V YGDDNL+SV FN I
Sbjct: 1890 NNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITERFNLVKIADL 1949
Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+W+
Sbjct: 1950 LAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLHWI 2007
[77][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
RepID=Q769F2_SDV
Length = 374
Score = 62.8 bits (151), Expect = 2e-08
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Frame = +3
Query: 6 NEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
NE +++++ + A + C F + + VYGDDN +SVA AS +N + I
Sbjct: 52 NEFYLKWSWMGIMREAGYAKEASLCAFHEATEISVYGDDNFVSVATPVASLYNLKTISEF 111
Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFL-KLDTGVIQAPLDMTAIFSSLYWL 341
L+ VK+ DG+ + TI+P P E+DFLKRKF+ + I PL+ +I L+++
Sbjct: 112 LSRVGVKLGDGA--KSGTIKPFIPLEEVDFLKRKFVADSKSTAILCPLNKRSIEERLFYV 169
Query: 342 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 461
G D I L LN+ AL E + H
Sbjct: 170 ----------------RGGQDEIAALELNIATALCEAFFH 193
[78][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 62.4 bits (150), Expect = 2e-08
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = +3
Query: 6 NEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
N + +AY KL + + K F+ V VYGDDNLISV + FN I
Sbjct: 362 NSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNL 421
Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I L+W+
Sbjct: 422 LLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLHWV 479
[79][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 62.4 bits (150), Expect = 2e-08
Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = +3
Query: 6 NEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
N + +AY KL + + K F+ V VYGDDNLISV + FN I
Sbjct: 1732 NSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNL 1791
Query: 168 LAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 341
L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I L+W+
Sbjct: 1792 LLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLHWV 1849
[80][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 62.4 bits (150), Expect = 2e-08
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161
NE +RYA+ L +P K + + VYGDDNL++V P W+ AI
Sbjct: 1458 NEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELQWYTLPAIA 1516
Query: 162 VTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335
L V I +G DK+ K EL FL R F + G +QAPL +I +Y
Sbjct: 1517 QELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMY 1576
Query: 336 WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
W+ PS + T + + + G V E+LV +V AL E
Sbjct: 1577 WIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622
[81][TOP]
>UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic
sadwavirus RepID=A4UVR7_SDV
Length = 319
Score = 62.0 bits (149), Expect = 3e-08
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +3
Query: 60 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KP 236
C F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 21 CAFHEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIP 78
Query: 237 FWELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVI 410
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 79 LEEVDFLKRQFI-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDEL 121
Query: 411 EELVLNVNVALMELYLH 461
L LNV AL E + H
Sbjct: 122 AALELNVATALCEAFFH 138
[82][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 62.0 bits (149), Expect = 3e-08
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161
NE +RYA+ L +P K + + VYGDDNL++V P W+ AI
Sbjct: 1458 NEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELHWYTLPAIA 1516
Query: 162 VTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335
L V I +G DK+ K EL FL R F + G +QAPL +I +Y
Sbjct: 1517 QELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIEPMY 1576
Query: 336 WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
W+ PS + T + + + G V E+LV +V AL E
Sbjct: 1577 WIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622
[83][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
Length = 1759
Score = 58.9 bits (141), Expect = 3e-07
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Frame = +3
Query: 3 FNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
+N I++R ++ K P+ + + F + V LI YGDDN++++ WFN I
Sbjct: 1571 YNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQINISEV 1630
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLYW 338
+ E + + TD + K ++ + ++ FLKRKF +L V APL + I+ L W
Sbjct: 1631 MTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKFRFSPELQRHV--APLKIEVIYEMLNW 1687
Query: 339 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVA 506
S +D E L+ N+ A E+ H +E+ ++RS +A
Sbjct: 1688 SRRS----------------IDPDEILMSNIETAFREVVYHG-KEEYDKLRSAVLA 1726
[84][TOP]
>UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic
sadwavirus RepID=A4UVR5_SDV
Length = 319
Score = 58.2 bits (139), Expect = 5e-07
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Frame = +3
Query: 66 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242
F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 23 FYEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIPLE 80
Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 81 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAA 123
Query: 417 LVLNVNVALMELYLH 461
L LNV AL E + H
Sbjct: 124 LELNVATALCEAFFH 138
[85][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 57.8 bits (138), Expect = 6e-07
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 161
NE +RYA+ L +P K + + VYGDDNL++V P W++ I
Sbjct: 1461 NEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGDDNLVAV-PLHLQWYSLPNIA 1519
Query: 162 VTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 335
L V I +G DK D ++ + EL FL R F + G APL +I +Y
Sbjct: 1520 QELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPMY 1579
Query: 336 WLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
W+ P+ + T + + + G+V E+LV +V AL E
Sbjct: 1580 WIRPAPGCPDAQAMMENVETGIREAFHHGQV-AYEKLVADVQEALNE 1625
[86][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
Length = 2151
Score = 57.8 bits (138), Expect = 6e-07
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 20/168 (11%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 158
NE +RYA+ L +P + F Q + + VYGDDNL++V P W++ I
Sbjct: 1459 NEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSLPNI 1516
Query: 159 RVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 332
L V I +G DK D ++ + EL FL R F + G APL +I +
Sbjct: 1517 AHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPM 1576
Query: 333 YWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
YW+ P+ + T + + + G V ++LVL+V AL E
Sbjct: 1577 YWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVLDVQTALDE 1623
[87][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
RepID=A7KCA2_9VIRU
Length = 1614
Score = 57.8 bits (138), Expect = 6e-07
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
N + +RY Y L P+ F+ V L+ YGDDN++SV+ C WFN +I T A +
Sbjct: 1302 NSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC-DWFNHTSISETFATLNI 1360
Query: 186 KITDGSDKDAPTIEPKPFWELDFLKRKFLKLD-TGVIQAPLDMTAIFSSLYWLTPSK 353
T +DK++ ++ + FLKR + D G APL+ +I SL T SK
Sbjct: 1361 VYT-MADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEEESIEKSLMVWTRSK 1416
[88][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
RepID=A0N0G3_9VIRU
Length = 1943
Score = 55.5 bits (132), Expect = 3e-06
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 158
NE +RYA+ L +P + F Q + + VYGDDNL++V P W++ I
Sbjct: 1251 NEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSLPNI 1308
Query: 159 RVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSL 332
L V I +G DK D ++ + EL FL R F + G APL +I +
Sbjct: 1309 AHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIEPM 1368
Query: 333 YWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 449
YW+ P+ + T + + + G V ++LV +V AL E
Sbjct: 1369 YWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVSDVQTALDE 1415
[89][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
RepID=UPI0000164A61
Length = 694
Score = 55.1 bits (131), Expect = 4e-06
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170
N+ + +A+RK+ + + R ++ C VYGDDN++S + +N I L
Sbjct: 357 NQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAEL 416
Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 350
V ++DG K ++ F ELDFLKR+++ PL +AI L+W+ S
Sbjct: 417 KTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSS 475
Query: 351 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 491
+D +E L N ALME + H D F R R
Sbjct: 476 EDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 507
[90][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
Length = 1915
Score = 55.1 bits (131), Expect = 4e-06
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170
N+ + +A+RK+ + + R ++ C VYGDDN++S + +N I L
Sbjct: 1578 NQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIAAEL 1637
Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 350
V ++DG K ++ F ELDFLKR+++ PL +AI L+W+ S
Sbjct: 1638 KTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWVRSS 1696
Query: 351 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 491
+D +E L N ALME + H D F R R
Sbjct: 1697 EDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 1728
[91][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
Length = 2163
Score = 54.7 bits (130), Expect = 5e-06
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Frame = +3
Query: 6 NEILIRYAYRKL----APKPEKCRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIRVTL 170
N+ + +A+RK+ +P R +T C VYGDDN++S + + +N I L
Sbjct: 1639 NQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVVSFSLAVRDMYNLCTIADEL 1698
Query: 171 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTG-VIQAPLDMTAIFSSLYWLTP 347
V ++DG K I+ F +LDFLKR++ +L+ G + PLD AI L+W+
Sbjct: 1699 KTIGVTLSDGK-KTGVLIKWTGFKDLDFLKRRW-ELEPGHGFKCPLDKMAIEERLFWVRK 1756
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 461
S+D +E L N ALME + H
Sbjct: 1757 SEDN----------------MESLDDNCYSALMEAFHH 1778
[92][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
RepID=UPI0000164A59
Length = 682
Score = 54.3 bits (129), Expect = 7e-06
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Frame = +3
Query: 66 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242
F + + +YGDDN +SVA AS +N I L VK+ DG+ TI+P P
Sbjct: 386 FHEATEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLE 443
Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416
E+DFLKR+F+ D+G I PL +I L+++ G D I
Sbjct: 444 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAA 486
Query: 417 LVLNVNVALMELYLH 461
L LN+ AL E + H
Sbjct: 487 LELNIATALCEAFFH 501
[93][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
Length = 2081
Score = 54.3 bits (129), Expect = 7e-06
Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Frame = +3
Query: 66 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 242
F + + +YGDDN +SVA AS +N I L VK+ DG+ TI+P P
Sbjct: 1785 FHEATEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLE 1842
Query: 243 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 416
E+DFLKR+F+ D+G I PL +I L+++ G D I
Sbjct: 1843 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAA 1885
Query: 417 LVLNVNVALMELYLH 461
L LN+ AL E + H
Sbjct: 1886 LELNIATALCEAFFH 1900
[94][TOP]
>UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F388_9VIRU
Length = 139
Score = 54.3 bits (129), Expect = 7e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +3
Query: 6 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 185
N + +RYAY L PK E F++ V L+ YGDDN++SV+P+ A W+N AI A +
Sbjct: 73 NSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWYNHTAIAAAFATMDI 131
Query: 186 KIT 194
T
Sbjct: 132 TYT 134
[95][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling
virus RepID=Q9YZ97_SDV
Length = 872
Score = 53.9 bits (128), Expect = 9e-06
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Frame = +3
Query: 6 NEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVT 167
NE +++++ L A + F + + +YGDDN +SVA AS +N + I
Sbjct: 549 NEFYLKWSWMGLMKEAGYAKEASLYAFHEATEISLYGDDNFVSVATPVASLYNLKTISEF 608
Query: 168 LAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTP 347
L VK+ DG+ K T P E+DFLKR+F+ A TAI L P
Sbjct: 609 LRRIGVKLGDGA-KTGITKPFIPLEEVDFLKRQFV--------ADAGSTAI------LCP 653
Query: 348 SKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQR 485
K K ++ G D + L LN+ AL E + H KE+ R
Sbjct: 654 LK-KISIEERLFYVKGGQDELAALELNMATALCEAFFH--GKEYFR 696