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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 325 bits (832), Expect = 2e-87
Identities = 150/190 (78%), Positives = 170/190 (89%)
Frame = +2
Query: 8 QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCG 187
QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV G
Sbjct: 530 QFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAG 589
Query: 188 PHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLI 367
PHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI
Sbjct: 590 PHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLI 649
Query: 368 YPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTGLE 547
+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLE
Sbjct: 650 HPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLE 709
Query: 548 QYFDAPIPQA 577
QYFDAP+P A
Sbjct: 710 QYFDAPLPTA 719
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 325 bits (832), Expect = 2e-87
Identities = 150/190 (78%), Positives = 170/190 (89%)
Frame = +2
Query: 8 QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCG 187
QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV G
Sbjct: 1970 QFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAG 2029
Query: 188 PHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLI 367
PHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI
Sbjct: 2030 PHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLI 2089
Query: 368 YPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTGLE 547
+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLE
Sbjct: 2090 HPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLE 2149
Query: 548 QYFDAPIPQA 577
QYFDAP+P A
Sbjct: 2150 QYFDAPLPTA 2159
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 309 bits (792), Expect = 9e-83
Identities = 147/192 (76%), Positives = 166/192 (86%)
Frame = +2
Query: 2 VDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGV 181
V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV
Sbjct: 528 VSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGV 587
Query: 182 CGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGY 361
GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN+KGY
Sbjct: 588 SGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGY 647
Query: 362 LIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTG 541
LI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+G
Sbjct: 648 LITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSG 707
Query: 542 LEQYFDAPIPQA 577
LEQYFDAPIPQA
Sbjct: 708 LEQYFDAPIPQA 719
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 309 bits (792), Expect = 9e-83
Identities = 147/192 (76%), Positives = 166/192 (86%)
Frame = +2
Query: 2 VDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGV 181
V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV
Sbjct: 1970 VSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGV 2029
Query: 182 CGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGY 361
GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN+KGY
Sbjct: 2030 SGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGY 2089
Query: 362 LIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTG 541
LI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+G
Sbjct: 2090 LITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSG 2149
Query: 542 LEQYFDAPIPQA 577
LEQYFDAPIPQA
Sbjct: 2150 LEQYFDAPIPQA 2161
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 268 bits (685), Expect = 2e-70
Identities = 126/192 (65%), Positives = 151/192 (78%)
Frame = +2
Query: 2 VDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGV 181
VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGV
Sbjct: 527 VDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGV 586
Query: 182 CGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGY 361
CGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN GY
Sbjct: 587 CGPHYKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGY 645
Query: 362 LIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTG 541
Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES G
Sbjct: 646 ACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDG 705
Query: 542 LEQYFDAPIPQA 577
L YFDAP+P A
Sbjct: 706 LTGYFDAPLPAA 717
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 268 bits (685), Expect = 2e-70
Identities = 126/192 (65%), Positives = 151/192 (78%)
Frame = +2
Query: 2 VDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGV 181
VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGV
Sbjct: 1953 VDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGV 2012
Query: 182 CGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGY 361
CGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN GY
Sbjct: 2013 CGPHYKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGY 2071
Query: 362 LIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTG 541
Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES G
Sbjct: 2072 ACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDG 2131
Query: 542 LEQYFDAPIPQA 577
L YFDAP+P A
Sbjct: 2132 LTGYFDAPLPAA 2143
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 191 bits (486), Expect = 3e-47
Identities = 99/189 (52%), Positives = 124/189 (65%)
Frame = +2
Query: 11 FRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGP 190
+ TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP
Sbjct: 538 YYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGP 597
Query: 191 HYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIY 370
YKP + +VST PLK G G VP++ G G+G LPT WV F + + L +A GY I+
Sbjct: 598 FYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIW 657
Query: 371 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTGLEQ 550
+R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQ
Sbjct: 658 GNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQ 717
Query: 551 YFDAPIPQA 577
YFDA IPQA
Sbjct: 718 YFDAAIPQA 726
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 191 bits (486), Expect = 3e-47
Identities = 99/189 (52%), Positives = 124/189 (65%)
Frame = +2
Query: 11 FRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGP 190
+ TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP
Sbjct: 2028 YYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGP 2087
Query: 191 HYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIY 370
YKP + +VST PLK G G VP++ G G+G LPT WV F + + L +A GY I+
Sbjct: 2088 FYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIW 2147
Query: 371 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTGLEQ 550
+R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQ
Sbjct: 2148 GNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQ 2207
Query: 551 YFDAPIPQA 577
YFDA IPQA
Sbjct: 2208 YFDAAIPQA 2216
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 92.4 bits (228), Expect = 2e-17
Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%)
Frame = +2
Query: 17 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGP 190
TW FH +QQ G + + P + ++ + + K M ++ G + H + + V GP
Sbjct: 1713 TWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGP 1771
Query: 191 HY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKG 358
+ + C++ F+VST PL G H+P++ G G+GR+P+++WV F + +++ +
Sbjct: 1772 KWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQI 1828
Query: 359 YLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTT 538
+IY + AGK IIF APY+A A I+F A + + RD L Y N +++
Sbjct: 1829 RVIY----DAYAAGKTIIFKDVAPYIAGWTAAISFACA-QQYSYRDMLNRYNNVCTPNSS 1883
Query: 539 GLEQYF 556
G+EQYF
Sbjct: 1884 GIEQYF 1889
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 63.9 bits (154), Expect = 8e-09
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 2/185 (1%)
Frame = +2
Query: 8 QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCG 187
+ TW ++FH Q +G P +++ GV F F+ + H L + G
Sbjct: 1968 ELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISG 2027
Query: 188 PHYKPCEEDFIVSTEPLKMGILGEH-VPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYL 364
Y +E+ ++S L G + H + +K G G+GRLP+ K+S L +
Sbjct: 2028 ARYIAKKEEILMSLSSLLPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGI 2079
Query: 365 IYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCI-PESTTG 541
+ L ++ LE K ++ PY+ A G + + R L Y N + P+ G
Sbjct: 2080 VMRLCKQALEEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNG 2138
Query: 542 LEQYF 556
L YF
Sbjct: 2139 LAGYF 2143
[11][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 17 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 187
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 508 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 565
Query: 188 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 352
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 566 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 625
Query: 353 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAI 475
+ +R+ +GK I F PYVAN A I F +
Sbjct: 626 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 659
[12][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 17 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 187
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 1895 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 1952
Query: 188 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 352
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 1953 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 2012
Query: 353 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAI 475
+ +R+ +GK I F PYVAN A I F +
Sbjct: 2013 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 2046
[13][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 59.7 bits (143), Expect = 2e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 576
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 577 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 674
[14][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 59.7 bits (143), Expect = 2e-07
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 5/192 (2%)
Frame = +2
Query: 8 QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCG 187
+ TW + FH Q +G P +++ G F F+ + + H L + G
Sbjct: 507 ELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISG 566
Query: 188 PHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYL 364
Y EE+ ++S L G I + +K G G+GRLP+ K+S L K +
Sbjct: 567 SKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGI 618
Query: 365 IYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCI-PESTTG 541
+ L ++ K ++ PY+ A G + + +D L Y N + P G
Sbjct: 619 VMQLCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNG 677
Query: 542 LEQY---FDAPI 568
L Y FD+P+
Sbjct: 678 LATYFTDFDSPV 689
[15][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 59.7 bits (143), Expect = 2e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[16][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 59.7 bits (143), Expect = 2e-07
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWR 576
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 577 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK I+F P+V+ AA I+FG++I +N +D L++Y
Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGASIG-MNAQDLLINY 674
[17][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 59.7 bits (143), Expect = 2e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 2005 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 2062
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 2063 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 2115
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 2116 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 2160
[18][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 59.7 bits (143), Expect = 2e-07
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 5/192 (2%)
Frame = +2
Query: 8 QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCG 187
+ TW + FH Q +G P +++ G F F+ + + H L + G
Sbjct: 1966 ELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISG 2025
Query: 188 PHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYL 364
Y EE+ ++S L G I + +K G G+GRLP+ K+S L K +
Sbjct: 2026 SKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGI 2077
Query: 365 IYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCI-PESTTG 541
+ L ++ K ++ PY+ A G + + +D L Y N + P G
Sbjct: 2078 VMQLCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNG 2136
Query: 542 LEQY---FDAPI 568
L Y FD+P+
Sbjct: 2137 LATYFTDFDSPV 2148
[19][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 59.3 bits (142), Expect = 2e-07
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK ++F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[20][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 58.9 bits (141), Expect = 3e-07
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWR 850
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK ++F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[21][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 57.4 bits (137), Expect = 8e-07
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C +FH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWR 850
Query: 200 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 373
+ D +VS LK G + P+ YG GVG+ T+ + ++ K +
Sbjct: 851 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH------ 904
Query: 374 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHY 511
+R+ GK I+F P+V+ AA I+FG+ + +N +D L +Y
Sbjct: 905 -MRDSWNEGKTIVFRCEGPFVSGWAAAISFGTTVG-MNAQDLLRNY 948
[22][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 56.6 bits (135), Expect = 1e-06
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 2/185 (1%)
Frame = +2
Query: 8 QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCG 187
+ TW ESFH Q++G + P +++ G F F + + H L + G
Sbjct: 1967 ELTTWFQAESFHECQKSGESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAG 2026
Query: 188 PHYKPCEEDFIVSTEPLKMGILGE-HVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYL 364
Y E + ++S + G + + G G+GRLP+K +++ K L
Sbjct: 2027 TKYIATENEIVLSLSSVLPGDRNVFKLDLPCGDGIGRLPSKCSILNLRKPG--------L 2078
Query: 365 IYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCI-PESTTG 541
+ L + + K ++ PY+ A G + Q+ L Y N + P G
Sbjct: 2079 VMRLCKRAQDEKKTLVIRDERPYIGAWAVACICGESFG-FGQQSVLALYANLLGPNQRNG 2137
Query: 542 LEQYF 556
L YF
Sbjct: 2138 LASYF 2142
[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 54.7 bits (130), Expect = 5e-06
Identities = 46/180 (25%), Positives = 69/180 (38%)
Frame = +2
Query: 20 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 199
W C ++ TG +PA VLD + K FM + N + + VCGP +
Sbjct: 2021 WNQCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFS 2080
Query: 200 PCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLL 379
+ + L G G + + G +PT +V SF ++ K L
Sbjct: 2081 ASGPSYTLCFNRLAAGETGVQIKPVHAATQGAMPTAKFVESF------RSIKKRPELELA 2134
Query: 380 REQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRDALVHYRNCIPESTTGLEQYFD 559
E+G + F APY A I+F SA ++ L Y NC + L YF+
Sbjct: 2135 ISAYESGSNLYFKGCAPYNDIWACAISFCSAFGYAQKQVLLHMYDNCKRLGASSLRSYFN 2194