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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 322 bits (825), Expect = 1e-86
Identities = 148/193 (76%), Positives = 169/193 (87%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DF
Sbjct: 506 LHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDF 565
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
KKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMGV GEHVPI+YG G+G
Sbjct: 566 KKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGG 625
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPTK WVL+FG+ S LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+
Sbjct: 626 LPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGG 685
Query: 542 KLLNQRDALVHYR 580
K+L Q+DALVHYR
Sbjct: 686 KMLIQKDALVHYR 698
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 322 bits (825), Expect = 1e-86
Identities = 148/193 (76%), Positives = 169/193 (87%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DF
Sbjct: 1946 LHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDF 2005
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
KKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMGV GEHVPI+YG G+G
Sbjct: 2006 KKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGG 2065
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPTK WVL+FG+ S LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+
Sbjct: 2066 LPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGG 2125
Query: 542 KLLNQRDALVHYR 580
K+L Q+DALVHYR
Sbjct: 2126 KMLIQKDALVHYR 2138
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 303 bits (775), Expect = 8e-81
Identities = 145/193 (75%), Positives = 164/193 (84%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDF
Sbjct: 506 LHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDF 565
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
K+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK GV GE+VPI +G GIG
Sbjct: 566 KRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGG 625
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPTK WV +FGK S LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA
Sbjct: 626 LPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAH 685
Query: 542 KLLNQRDALVHYR 580
K+L Q+DAL HYR
Sbjct: 686 KMLIQKDALAHYR 698
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 303 bits (775), Expect = 8e-81
Identities = 145/193 (75%), Positives = 164/193 (84%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDF
Sbjct: 1948 LHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDF 2007
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
K+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK GV GE+VPI +G GIG
Sbjct: 2008 KRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGG 2067
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPTK WV +FGK S LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA
Sbjct: 2068 LPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAH 2127
Query: 542 KLLNQRDALVHYR 580
K+L Q+DAL HYR
Sbjct: 2128 KMLIQKDALAHYR 2140
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 273 bits (699), Expect = 5e-72
Identities = 126/193 (65%), Positives = 154/193 (79%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F
Sbjct: 505 LHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEF 564
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
+FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGG+G
Sbjct: 565 PRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGG 623
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPT WV NFG+ S LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+
Sbjct: 624 LPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSR 683
Query: 542 KLLNQRDALVHYR 580
K+L ++ L HYR
Sbjct: 684 KILKEQMPLCHYR 696
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 273 bits (699), Expect = 5e-72
Identities = 126/193 (65%), Positives = 154/193 (79%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F
Sbjct: 1931 LHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEF 1990
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
+FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGG+G
Sbjct: 1991 PRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGG 2049
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPT WV NFG+ S LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+
Sbjct: 2050 LPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSR 2109
Query: 542 KLLNQRDALVHYR 580
K+L ++ L HYR
Sbjct: 2110 KILKEQMPLCHYR 2122
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 179 bits (453), Expect = 2e-43
Identities = 92/193 (47%), Positives = 123/193 (63%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F
Sbjct: 513 LHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEF 572
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
+FMH S+ GN+ HF L V GP YKP + +VST PLK G G VP++ G GIG
Sbjct: 573 ARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGN 632
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPT WV F + + L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A
Sbjct: 633 LPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAA 692
Query: 542 KLLNQRDALVHYR 580
KLL + AL YR
Sbjct: 693 KLLEIKTALNLYR 705
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 179 bits (453), Expect = 2e-43
Identities = 92/193 (47%), Positives = 123/193 (63%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F
Sbjct: 2003 LHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEF 2062
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
+FMH S+ GN+ HF L V GP YKP + +VST PLK G G VP++ G GIG
Sbjct: 2063 ARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGN 2122
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
LPT WV F + + L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A
Sbjct: 2123 LPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAA 2182
Query: 542 KLLNQRDALVHYR 580
KLL + AL YR
Sbjct: 2183 KLLEIKTALNLYR 2195
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 95.1 bits (235), Expect = 3e-18
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 6/197 (3%)
Frame = +2
Query: 5 HNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFK 184
H D EF +RSF+V+++P D TW FH +QQ G + + P + ++ + +
Sbjct: 1688 HQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTD 1746
Query: 185 KFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--VLGEHVPIKYG 346
K M ++ G + H + + V GP + + C++ F+VST PL G H+P++ G
Sbjct: 1747 KKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECG 1805
Query: 347 GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIA 526
G+GR+P+++WV F + +++ + +IY + AGK IIF APY+A A I+
Sbjct: 1806 DGLGRMPSQDWVRRFRR---IRHVQIRVIY----DAYAAGKTIIFKDVAPYIAGWTAAIS 1858
Query: 527 FGSATKLLNQRDALVHY 577
F A + + RD L Y
Sbjct: 1859 FACAQQ-YSYRDMLNRY 1874
[10][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 71.6 bits (174), Expect = 4e-11
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LHND ++F VR+F+VT++ W C +FH Q + P L+ V
Sbjct: 765 LHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE--VDVPD 822
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G+
Sbjct: 823 VKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGV 882
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + K + +R+ GK I+F P+V+ AA I+FG+
Sbjct: 883 GQQATEASIFAYRKYKDHRVRH-------MRDSWNEGKTIVFRCEGPFVSGWAAAISFGT 935
Query: 536 ATKLLNQRDALVHY 577
T +N +D L +Y
Sbjct: 936 -TVGMNAQDLLRNY 948
[11][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 70.5 bits (171), Expect = 9e-11
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 2/181 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVD 178
LH D + F VR+F++ +LP + TW ++FH Q +G P +++ GV
Sbjct: 1943 LHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVG 2002
Query: 179 FKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEH-VPIKYGGGI 355
F F+ + H L + G Y +E+ ++S L G + H + +K G GI
Sbjct: 2003 FASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNAHKLELKCGDGI 2062
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
GRLP+ K+S L ++ L ++ LE K ++ PY+ A G
Sbjct: 2063 GRLPS--------KASVLAQRNPGIVMRLCKQALEEKKTLVIRDERPYIGGWAMACICGE 2114
Query: 536 A 538
+
Sbjct: 2115 S 2115
[12][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 69.3 bits (168), Expect = 2e-10
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH D ++F VR+F+V ++ W C SFH Q + P L+ V
Sbjct: 491 LHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPD 548
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G
Sbjct: 549 AKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGT 608
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + + LK+ + +R+ GK I+F P+V+ AA I+FG+
Sbjct: 609 GQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGT 661
Query: 536 ATKLLNQRDALVHY 577
+ +N +D L++Y
Sbjct: 662 SVG-MNAQDLLINY 674
[13][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 69.3 bits (168), Expect = 2e-10
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH D ++F VR+F+V ++ W C SFH Q + P L+ V
Sbjct: 765 LHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPD 822
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G
Sbjct: 823 AKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGT 882
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + + LK+ + +R+ GK I+F P+V+ AA I+FG+
Sbjct: 883 GQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGT 935
Query: 536 ATKLLNQRDALVHY 577
+ +N +D L++Y
Sbjct: 936 SVG-MNAQDLLINY 948
[14][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 69.3 bits (168), Expect = 2e-10
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH D ++F VR+F+V ++ W C SFH Q + P L+ V
Sbjct: 1977 LHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPD 2034
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G
Sbjct: 2035 AKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGT 2094
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + + LK+ + +R+ GK I+F P+V+ AA I+FG+
Sbjct: 2095 GQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGT 2147
Query: 536 ATKLLNQRDALVHY 577
+ +N +D L++Y
Sbjct: 2148 SVG-MNAQDLLINY 2160
[15][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 68.6 bits (166), Expect = 3e-10
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH D ++F VR+F+V ++ W C SFH Q + P L+ V
Sbjct: 765 LHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPD 822
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G
Sbjct: 823 AKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGT 882
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + + LK+ + +R+ GK ++F P+V+ AA I+FG+
Sbjct: 883 GQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGPFVSGWAAAISFGT 935
Query: 536 ATKLLNQRDALVHY 577
+ +N +D L++Y
Sbjct: 936 SVG-MNAQDLLINY 948
[16][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 68.6 bits (166), Expect = 3e-10
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH D ++F VR+F+V ++ W C SFH Q + P L+ V
Sbjct: 765 LHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPD 822
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G
Sbjct: 823 AKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGT 882
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + + LK+ + +R+ GK ++F P+V+ AA I+FG+
Sbjct: 883 GQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGPFVSGWAAAISFGT 935
Query: 536 ATKLLNQRDALVHY 577
+ +N +D L++Y
Sbjct: 936 SVG-MNAQDLLINY 948
[17][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q155U1_9SECO
Length = 711
Score = 68.2 bits (165), Expect = 5e-10
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH D ++F VR+F+V ++ W C SFH Q + P L+ V
Sbjct: 491 LHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPD 548
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVPIKYGGGI 355
KF+ L V GP ++ + D +VS LK G + P+ YG G
Sbjct: 549 VKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGT 608
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
G+ T+ + + + LK+ + +R+ GK I+F P+V+ AA I+FG+
Sbjct: 609 GQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGA 661
Query: 536 ATKLLNQRDALVHY 577
+ +N +D L++Y
Sbjct: 662 SIG-MNAQDLLINY 674
[18][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 64.7 bits (156), Expect = 5e-09
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH + F +R F+ R +W +FH Q +G+ P + D VD
Sbjct: 483 LHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDG 538
Query: 182 KKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGVLGE--HVPIK 340
+ + +A F T + + +CGP + E F+VST PL+ G H I+
Sbjct: 539 GRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIE 598
Query: 341 YG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAA 517
Y G+GRLP+++WV F S+ A+ +R+ +GK I F PYVAN A
Sbjct: 599 YPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRDDPPYVANWCA 651
Query: 518 LIAF 529
I F
Sbjct: 652 AIGF 655
[19][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 64.7 bits (156), Expect = 5e-09
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
LH + F +R F+ R +W +FH Q +G+ P + D VD
Sbjct: 1870 LHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDG 1925
Query: 182 KKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGVLGE--HVPIK 340
+ + +A F T + + +CGP + E F+VST PL+ G H I+
Sbjct: 1926 GRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIE 1985
Query: 341 YG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAA 517
Y G+GRLP+++WV F S+ A+ +R+ +GK I F PYVAN A
Sbjct: 1986 YPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRDDPPYVANWCA 2038
Query: 518 LIAF 529
I F
Sbjct: 2039 AIGF 2042
[20][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 63.9 bits (154), Expect = 9e-09
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 16/208 (7%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVD 178
LH D F+ VR+F+ +LP + TW ESFH Q++G + P +++ G
Sbjct: 1942 LHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLIEISHGAA 2001
Query: 179 FKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGE-HVPIKYGGGI 355
F F + + H L + G Y E + ++S + G + + G GI
Sbjct: 2002 FASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLPGDRNVFKLDLPCGDGI 2061
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAAL----- 520
GRLP+K +LN K L+ L + + K ++ PY+ A
Sbjct: 2062 GRLPSKCSILNLRKPG--------LVMRLCKRAQDEKKTLVIRDERPYIGAWAVACICGE 2113
Query: 521 -IAFGSATKLL--------NQRDALVHY 577
FG + L NQR+ L Y
Sbjct: 2114 SFGFGQQSVLALYANLLGPNQRNGLASY 2141
[21][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 61.2 bits (147), Expect = 6e-08
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 2/181 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVD 178
LH D + + VR F++ +LP + TW + FH Q +G P +++ G
Sbjct: 482 LHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGAS 541
Query: 179 FKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-VLGEHVPIKYGGGI 355
F F+ + + H L + G Y EE+ ++S L G + + +K G GI
Sbjct: 542 FASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGI 601
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
GRLP+ K+S L K ++ L ++ K ++ PY+ A G
Sbjct: 602 GRLPS--------KASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGE 653
Query: 536 A 538
+
Sbjct: 654 S 654
[22][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 61.2 bits (147), Expect = 6e-08
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 2/181 (1%)
Frame = +2
Query: 2 LHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVD 178
LH D + + VR F++ +LP + TW + FH Q +G P +++ G
Sbjct: 1941 LHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGAS 2000
Query: 179 FKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-VLGEHVPIKYGGGI 355
F F+ + + H L + G Y EE+ ++S L G + + +K G GI
Sbjct: 2001 FASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGI 2060
Query: 356 GRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGS 535
GRLP+ K+S L K ++ L ++ K ++ PY+ A G
Sbjct: 2061 GRLPS--------KASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGE 2112
Query: 536 A 538
+
Sbjct: 2113 S 2113
[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 56.2 bits (134), Expect = 2e-06
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 3/191 (1%)
Frame = +2
Query: 11 DPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDF 181
D +EF +R+F++ RLP+ + + W C ++ TG +PA VLD +
Sbjct: 1993 DREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPRC 2052
Query: 182 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGR 361
K FM + N + + VCGP + + + L G G + + G
Sbjct: 2053 KSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQIKPVHAATQGA 2112
Query: 362 LPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 541
+PT +V S ++ K L E+G + F APY A I+F SA
Sbjct: 2113 MPTAKFV------ESFRSIKKRPELELAISAYESGSNLYFKGCAPYNDIWACAISFCSAF 2166
Query: 542 KLLNQRDALVH 574
Q+ L+H
Sbjct: 2167 GYA-QKQVLLH 2176