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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 322 bits (824), Expect = 2e-86
Identities = 149/192 (77%), Positives = 170/192 (88%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DF
Sbjct: 540 FHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDF 599
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
IVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+P+LR Q+EA
Sbjct: 600 IVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEA 659
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQYFDAP+P A
Sbjct: 660 GKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTA 719
Query: 541 NVGQFYFVDGET 576
+G FYF +GET
Sbjct: 720 TIGTFYFANGET 731
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 322 bits (824), Expect = 2e-86
Identities = 149/192 (77%), Positives = 170/192 (88%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DF
Sbjct: 1980 FHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDF 2039
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
IVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+P+LR Q+EA
Sbjct: 2040 IVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEA 2099
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQYFDAP+P A
Sbjct: 2100 GKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQYFDAPLPTA 2159
Query: 541 NVGQFYFVDGET 576
+G FYF +GET
Sbjct: 2160 TIGTFYFANGET 2171
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 308 bits (788), Expect = 3e-82
Identities = 149/192 (77%), Positives = 167/192 (86%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DF
Sbjct: 540 FHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDF 599
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
IVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI LLREQ+EA
Sbjct: 600 IVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEA 659
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQYFDAPIPQA
Sbjct: 660 GKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQA 719
Query: 541 NVGQFYFVDGET 576
+VG FYF DGET
Sbjct: 720 SVGTFYFGDGET 731
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 308 bits (788), Expect = 3e-82
Identities = 149/192 (77%), Positives = 167/192 (86%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DF
Sbjct: 1982 FHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDF 2041
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
IVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI LLREQ+EA
Sbjct: 2042 IVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEA 2101
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQYFDAPIPQA
Sbjct: 2102 GKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQYFDAPIPQA 2161
Query: 541 NVGQFYFVDGET 576
+VG FYF DGET
Sbjct: 2162 SVGTFYFGDGET 2173
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 259 bits (662), Expect = 1e-67
Identities = 121/192 (63%), Positives = 148/192 (77%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF
Sbjct: 539 FHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDF 598
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y LL EQ+E
Sbjct: 599 LVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQ 657
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL YFDAP+P A
Sbjct: 658 GKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLPAA 717
Query: 541 NVGQFYFVDGET 576
+G+ YF +GET
Sbjct: 718 TIGKSYFANGET 729
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 259 bits (662), Expect = 1e-67
Identities = 121/192 (63%), Positives = 148/192 (77%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF
Sbjct: 1965 FHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDF 2024
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y LL EQ+E
Sbjct: 2025 LVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQ 2083
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL YFDAP+P A
Sbjct: 2084 GKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGYFDAPLPAA 2143
Query: 541 NVGQFYFVDGET 576
+G+ YF +GET
Sbjct: 2144 TIGKSYFANGET 2155
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 190 bits (483), Expect = 6e-47
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP YKP +
Sbjct: 547 FHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQL 606
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
+VST PLK G G VP++ G GIG LPT WV F + + L +A GY I+ +R +E+
Sbjct: 607 LVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIES 666
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYFDA IPQA
Sbjct: 667 GKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQA 726
Query: 541 NV-GQFYFVDGET 576
++ G FY + E+
Sbjct: 727 SLPGTFYLANAES 739
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 190 bits (483), Expect = 6e-47
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP YKP +
Sbjct: 2037 FHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQL 2096
Query: 181 IVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEA 360
+VST PLK G G VP++ G GIG LPT WV F + + L +A GY I+ +R +E+
Sbjct: 2097 LVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIES 2156
Query: 361 GKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYFDAPIPQA 540
GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYFDA IPQA
Sbjct: 2157 GKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYFDAAIPQA 2216
Query: 541 NV-GQFYFVDGET 576
++ G FY + E+
Sbjct: 2217 SLPGTFYLANAES 2229
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 89.0 bits (219), Expect = 2e-16
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 6/179 (3%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPC 168
FH +QQ G + + P + ++ + + K M ++ G + H + + V GP + + C
Sbjct: 1720 FHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESC 1778
Query: 169 EEDFIVSTEPLKMG--VLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLL 342
++ F+VST PL G H+P++ G G+GR+P+++WV F + +++ + +IY
Sbjct: 1779 DKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY--- 1832
Query: 343 REQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYF 519
+ AGK IIF APY+A A I+F A + + RD L Y N +++G+EQYF
Sbjct: 1833 -DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRDMLNRYNNVCTPNSSGIEQYF 1889
[10][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 61.6 bits (148), Expect = 4e-08
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KP 165
FH Q +G+ P + D VD + + +A F T + + +CGP +
Sbjct: 515 FHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSD 572
Query: 166 CEEDFIVSTEPLKMGVLGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 336
E F+VST PL+ G H I+Y G+GRLP+++WV F S+ A+
Sbjct: 573 PEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE------ 626
Query: 337 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 516
+R+ +GK I F PYVAN A I F Y++ I Y
Sbjct: 627 -IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGLG--------YDYKSMI-------NLY 670
Query: 517 FDAPIPQANVGQFYF 561
D +P ++ FYF
Sbjct: 671 HDVSVPGSDALYFYF 685
[11][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 61.6 bits (148), Expect = 4e-08
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 8/195 (4%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KP 165
FH Q +G+ P + D VD + + +A F T + + +CGP +
Sbjct: 1902 FHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSD 1959
Query: 166 CEEDFIVSTEPLKMGVLGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 336
E F+VST PL+ G H I+Y G+GRLP+++WV F S+ A+
Sbjct: 1960 PEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE------ 2013
Query: 337 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 516
+R+ +GK I F PYVAN A I F Y++ I Y
Sbjct: 2014 -IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGLG--------YDYKSMI-------NLY 2057
Query: 517 FDAPIPQANVGQFYF 561
D +P ++ FYF
Sbjct: 2058 HDVSVPGSDALYFYF 2072
[12][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 57.8 bits (138), Expect = 6e-07
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 2/175 (1%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FH Q +G P +++ GV F F+ + H L + G Y +E+
Sbjct: 1978 FHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEI 2037
Query: 181 IVSTEPLKMGVLGEH-VPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLE 357
++S L G + H + +K G GIGRLP+ K+S L ++ L ++ LE
Sbjct: 2038 LMSLSSLLPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMRLCKQALE 2089
Query: 358 AGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQYF 519
K ++ PY+ A G + + R L Y N + P+ GL YF
Sbjct: 2090 EKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNGLAGYF 2143
[13][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 54.3 bits (129), Expect = 7e-06
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FH Q +G P +++ G F F+ + + H L + G Y EE+
Sbjct: 517 FHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEI 576
Query: 181 IVSTEPLKMGVLGE-HVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLE 357
++S L G + + +K G GIGRLP+ K+S L K ++ L ++
Sbjct: 577 LMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIK 628
Query: 358 AGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQY---FDA 525
K ++ PY+ A G + + +D L Y N + P GL Y FD+
Sbjct: 629 EKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYFTDFDS 687
Query: 526 PI 531
P+
Sbjct: 688 PV 689
[14][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 54.3 bits (129), Expect = 7e-06
Identities = 46/182 (25%), Positives = 75/182 (41%), Gaps = 5/182 (2%)
Frame = +1
Query: 1 FHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDF 180
FH Q +G P +++ G F F+ + + H L + G Y EE+
Sbjct: 1976 FHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEI 2035
Query: 181 IVSTEPLKMGVLGE-HVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLE 357
++S L G + + +K G GIGRLP+ K+S L K ++ L ++
Sbjct: 2036 LMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIK 2087
Query: 358 AGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQY---FDA 525
K ++ PY+ A G + + +D L Y N + P GL Y FD+
Sbjct: 2088 EKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLATYFTDFDS 2146
Query: 526 PI 531
P+
Sbjct: 2147 PV 2148