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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 317 bits (813), Expect = 3e-85
Identities = 146/194 (75%), Positives = 164/194 (84%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF
Sbjct: 455 LDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFS 514
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQ
Sbjct: 515 RVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQ 574
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
GNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+
Sbjct: 575 GNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLD 634
Query: 541 FGKSSSLKNAKGYL 582
FG+ S LKN GYL
Sbjct: 635 FGRPSQLKNKLGYL 648
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 317 bits (813), Expect = 3e-85
Identities = 146/194 (75%), Positives = 164/194 (84%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF
Sbjct: 1895 LDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFS 1954
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQ
Sbjct: 1955 RVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQ 2014
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
GNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+
Sbjct: 2015 GNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLD 2074
Query: 541 FGKSSSLKNAKGYL 582
FG+ S LKN GYL
Sbjct: 2075 FGRPSQLKNKLGYL 2088
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 305 bits (782), Expect = 1e-81
Identities = 144/194 (74%), Positives = 162/194 (83%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQ
Sbjct: 455 LDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQ 514
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQ
Sbjct: 515 RVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQ 574
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
GNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV
Sbjct: 575 GNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGD 634
Query: 541 FGKSSSLKNAKGYL 582
FGK S LKN+KGYL
Sbjct: 635 FGKPSQLKNSKGYL 648
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 305 bits (782), Expect = 1e-81
Identities = 144/194 (74%), Positives = 162/194 (83%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQ
Sbjct: 1897 LDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQ 1956
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQ
Sbjct: 1957 RVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQ 2016
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
GNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV
Sbjct: 2017 GNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGD 2076
Query: 541 FGKSSSLKNAKGYL 582
FGK S LKN+KGYL
Sbjct: 2077 FGKPSQLKNSKGYL 2090
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 281 bits (719), Expect = 3e-74
Identities = 129/193 (66%), Positives = 157/193 (81%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF
Sbjct: 454 LDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFN 513
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +
Sbjct: 514 RVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGE 573
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +
Sbjct: 574 GDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKN 632
Query: 541 FGKSSSLKNAKGY 579
FG+ S LKN GY
Sbjct: 633 FGRPSQLKNNDGY 645
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 281 bits (719), Expect = 3e-74
Identities = 129/193 (66%), Positives = 157/193 (81%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF
Sbjct: 1880 LDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFN 1939
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +
Sbjct: 1940 RVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGE 1999
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +
Sbjct: 2000 GDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKN 2058
Query: 541 FGKSSSLKNAKGY 579
FG+ S LKN GY
Sbjct: 2059 FGRPSQLKNNDGY 2071
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 171 bits (434), Expect = 3e-41
Identities = 90/193 (46%), Positives = 118/193 (61%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+TAIFS L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQ
Sbjct: 463 LDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQ 521
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+
Sbjct: 522 RVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDI 581
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
GN+ HF L V GP YKP + +VST PLK G G VP++ G G+G LPT WV
Sbjct: 582 GNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHR 641
Query: 541 FGKSSSLKNAKGY 579
F + + L +A GY
Sbjct: 642 FMRPTQLVDAYGY 654
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 171 bits (434), Expect = 3e-41
Identities = 90/193 (46%), Positives = 118/193 (61%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+TAIFS L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQ
Sbjct: 1953 LDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQ 2011
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
RVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+
Sbjct: 2012 RVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDI 2071
Query: 361 GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
GN+ HF L V GP YKP + +VST PLK G G VP++ G G+G LPT WV
Sbjct: 2072 GNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHR 2131
Query: 541 FGKSSSLKNAKGY 579
F + + L +A GY
Sbjct: 2132 FMRPTQLVDAYGY 2144
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 95.1 bits (235), Expect = 4e-18
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD TAI+SSL+W+ DV+ L N AL+E++ H D EF
Sbjct: 1651 LDKTAIYSSLHWVAGRGQ---------------DVMSALKDNARSALIEMWAHQDKAEFV 1695
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
+RSF+V+++P D TW FH +QQ G + + P + ++ + + K M ++
Sbjct: 1696 ELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANH 1753
Query: 361 GNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPT 522
G + H + + V GP + + C++ F+VST PL G H+P++ G G+GR+P+
Sbjct: 1754 GEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPS 1813
Query: 523 KNWVMSF 543
++WV F
Sbjct: 1814 QDWVRRF 1820
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 84.3 bits (207), Expect = 6e-15
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = +1
Query: 100 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 276
D++++LV NVN AL+EL+LH D + F VR+F++ +LP + TW ++FH Q +
Sbjct: 1925 DMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLS 1984
Query: 277 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
G P +++ GV F F+ + H L + G Y +E+ ++S L
Sbjct: 1985 GESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSL 2044
Query: 457 KMGILGEH-VPIKYGGGVGRLPTKNWVMS 540
G + H + +K G G+GRLP+K V++
Sbjct: 2045 LPGDVNAHKLELKCGDGIGRLPSKASVLA 2073
[11][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 80.9 bits (198), Expect = 7e-14
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 2/185 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AIFSSLY++ P + + + L LN VAL ELYLHND ++F
Sbjct: 730 LDLQAIFSSLYYINP----------------QGNTLNSLFLNAQVALRELYLHNDIEQFT 773
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C +FH Q + P L+ V KF+
Sbjct: 774 AVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAP 831
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG GVG+ T+ +
Sbjct: 832 STALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEASI 891
Query: 535 MSFGK 549
++ K
Sbjct: 892 FAYRK 896
[12][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 79.7 bits (195), Expect = 2e-13
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +1
Query: 100 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 276
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +
Sbjct: 464 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 523
Query: 277 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
G P +++ G F F+ + + H L + G Y EE+ ++S L
Sbjct: 524 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 583
Query: 457 KMG-ILGEHVPIKYGGGVGRLPTKNWVMS 540
G I + +K G G+GRLP+K V+S
Sbjct: 584 LPGDINAVKLTLKCGDGIGRLPSKASVLS 612
[13][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 79.7 bits (195), Expect = 2e-13
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +1
Query: 100 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 276
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +
Sbjct: 1923 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 1982
Query: 277 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
G P +++ G F F+ + + H L + G Y EE+ ++S L
Sbjct: 1983 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 2042
Query: 457 KMG-ILGEHVPIKYGGGVGRLPTKNWVMS 540
G I + +K G G+GRLP+K V+S
Sbjct: 2043 LPGDINAVKLTLKCGDGIGRLPSKASVLS 2071
[14][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 78.6 bits (192), Expect = 3e-13
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +1
Query: 100 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 276
D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + TW ESFH Q++
Sbjct: 1924 DMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKS 1983
Query: 277 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
G + P +++ G F F + + H L + G Y E + ++S +
Sbjct: 1984 GESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSV 2043
Query: 457 KMGILGE-HVPIKYGGGVGRLPTKNWVMSFGK 549
G + + G G+GRLP+K +++ K
Sbjct: 2044 LPGDRNVFKLDLPCGDGIGRLPSKCSILNLRK 2075
[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 77.4 bits (189), Expect = 8e-13
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AI+SSLY++ P + ++++ L LN VAL ELYLH D ++F
Sbjct: 456 LDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFT 499
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 500 AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 557
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG G G+ T+ +
Sbjct: 558 ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 617
Query: 535 MSF 543
++
Sbjct: 618 RAY 620
[16][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 77.4 bits (189), Expect = 8e-13
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AI+SSLY++ P + +++ L LN VAL ELYLH D ++F
Sbjct: 730 LDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFT 773
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 774 AVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 831
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG G G+ T+ +
Sbjct: 832 ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 891
Query: 535 MSF 543
++
Sbjct: 892 RAY 894
[17][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 77.4 bits (189), Expect = 8e-13
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AI+SSLY++ P + ++++ L LN VAL ELYLH D ++F
Sbjct: 730 LDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFT 773
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 774 AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 831
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG G G+ T+ +
Sbjct: 832 ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 891
Query: 535 MSF 543
++
Sbjct: 892 RAY 894
[18][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 77.4 bits (189), Expect = 8e-13
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AI+SSLY++ P + ++++ L LN VAL ELYLH D ++F
Sbjct: 1942 LDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFT 1985
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 1986 AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 2043
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG G G+ T+ +
Sbjct: 2044 ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 2103
Query: 535 MSF 543
++
Sbjct: 2104 RAY 2106
[19][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 77.0 bits (188), Expect = 1e-12
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AI+SSLY++ P + +++ L LN VAL ELYLH D ++F
Sbjct: 456 LDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFT 499
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 500 AVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAP 557
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG G G+ T+ +
Sbjct: 558 ATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 617
Query: 535 MSF 543
++
Sbjct: 618 RAY 620
[20][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 76.6 bits (187), Expect = 1e-12
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ AI+SSLY++ P + +++ L LN VAL ELYLH D ++F
Sbjct: 730 LDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFT 773
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 774 AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 831
Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
L V GP ++ + D +VS LK G + P+ YG G G+ T+ +
Sbjct: 832 ATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 891
Query: 535 MSF 543
++
Sbjct: 892 RAY 894
[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 70.1 bits (170), Expect = 1e-10
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD T I+SSL +L S + D I L NV AL ELY D +EF
Sbjct: 1954 LDRTCIYSSLLYLR---------------SADCDPIPLLHQNVQNALQELYYRQDREEFD 1998
Query: 181 RVRSFFVARLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHV 351
+R+F++ RLP+ + + W C ++ TG +PA VLD + K FM
Sbjct: 1999 NLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFMLP 2058
Query: 352 SEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNW 531
+ N + + VCGP + + + L G G + + G +PT +
Sbjct: 2059 AGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQIKPVHAATQGAMPTAKF 2118
Query: 532 VMSF 543
V SF
Sbjct: 2119 VESF 2122
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 65.1 bits (157), Expect = 4e-09
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ ++++SL +T H L NV+ AL+ELYLH + F
Sbjct: 447 LDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETWFN 491
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
+R F+ R +W +FH Q +G+ P + D VD + +
Sbjct: 492 HLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMAN 547
Query: 361 GNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRL 516
+A F T + + +CGP + E F+VST PL+ G H I+Y GVGRL
Sbjct: 548 QGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRL 607
Query: 517 PTKNWVMSFGKSS 555
P+++WV F S+
Sbjct: 608 PSQDWVTKFKSSA 620
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 65.1 bits (157), Expect = 4e-09
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
Frame = +1
Query: 1 LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
LD+ ++++SL +T H L NV+ AL+ELYLH + F
Sbjct: 1834 LDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETWFN 1878
Query: 181 RVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
+R F+ R +W +FH Q +G+ P + D VD + +
Sbjct: 1879 HLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMAN 1934
Query: 361 GNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRL 516
+A F T + + +CGP + E F+VST PL+ G H I+Y GVGRL
Sbjct: 1935 QGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRL 1994
Query: 517 PTKNWVMSFGKSS 555
P+++WV F S+
Sbjct: 1995 PSQDWVTKFKSSA 2007