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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 316 bits (810), Expect = 7e-85
Identities = 143/192 (74%), Positives = 167/192 (86%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HNDP+EF RVR F++ LPL QFRTWA+CE+FHS QQTGML++DPA VLDHMSG+DFK
Sbjct: 507 HNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFK 566
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
KFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG G+G L
Sbjct: 567 KFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGL 626
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PTK WV+ FG+ S+LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ +
Sbjct: 627 PTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGK 686
Query: 543 LLNQRDALVHYR 578
+L Q+DALVHYR
Sbjct: 687 MLIQKDALVHYR 698
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 316 bits (810), Expect = 7e-85
Identities = 143/192 (74%), Positives = 167/192 (86%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HNDP+EF RVR F++ LPL QFRTWA+CE+FHS QQTGML++DPA VLDHMSG+DFK
Sbjct: 1947 HNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFK 2006
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
KFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG G+G L
Sbjct: 2007 KFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGL 2066
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PTK WV+ FG+ S+LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ +
Sbjct: 2067 PTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGK 2126
Query: 543 LLNQRDALVHYR 578
+L Q+DALVHYR
Sbjct: 2127 MLIQKDALVHYR 2138
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 298 bits (763), Expect = 2e-79
Identities = 141/192 (73%), Positives = 162/192 (84%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HND EFQRVR F+ RLPL+V Q RTWA+CE+FHS QQTGM ++DPA VLDHMSGVDFK
Sbjct: 507 HNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFK 566
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G GIG L
Sbjct: 567 RFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGL 626
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PTK WV FGK S+LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA +
Sbjct: 627 PTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHK 686
Query: 543 LLNQRDALVHYR 578
+L Q+DAL HYR
Sbjct: 687 MLIQKDALAHYR 698
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 298 bits (763), Expect = 2e-79
Identities = 141/192 (73%), Positives = 162/192 (84%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HND EFQRVR F+ RLPL+V Q RTWA+CE+FHS QQTGM ++DPA VLDHMSGVDFK
Sbjct: 1949 HNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFK 2008
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G GIG L
Sbjct: 2009 RFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGL 2068
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PTK WV FGK S+LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA +
Sbjct: 2069 PTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHK 2128
Query: 543 LLNQRDALVHYR 578
+L Q+DAL HYR
Sbjct: 2129 MLIQKDALAHYR 2140
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 269 bits (687), Expect = 1e-70
Identities = 123/192 (64%), Positives = 154/192 (80%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HND +EF RVRSF++ARLP+ VDQFRTWA+CE+FHS QQTGMLRHDPA +LD ++G +F
Sbjct: 506 HNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFP 565
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
+FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGG+G L
Sbjct: 566 RFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGL 624
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PT WV +FG+ S+LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ +
Sbjct: 625 PTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRK 684
Query: 543 LLNQRDALVHYR 578
+L ++ L HYR
Sbjct: 685 ILKEQMPLCHYR 696
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 269 bits (687), Expect = 1e-70
Identities = 123/192 (64%), Positives = 154/192 (80%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HND +EF RVRSF++ARLP+ VDQFRTWA+CE+FHS QQTGMLRHDPA +LD ++G +F
Sbjct: 1932 HNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFP 1991
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
+FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGG+G L
Sbjct: 1992 RFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGL 2050
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PT WV +FG+ S+LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ +
Sbjct: 2051 PTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRK 2110
Query: 543 LLNQRDALVHYR 578
+L ++ L HYR
Sbjct: 2111 ILKEQMPLCHYR 2122
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 175 bits (444), Expect = 2e-42
Identities = 89/192 (46%), Positives = 123/192 (64%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H + +EFQRVR+F+ ++ +L + TWA E+FH +QTGM + PA +D G +F
Sbjct: 514 HGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFA 573
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
+FMH S+ GN+ HF L V GP YKP + +VST PLK G G VP++ G GIG L
Sbjct: 574 RFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNL 633
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PT +WV F + ++L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A +
Sbjct: 634 PTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAK 693
Query: 543 LLNQRDALVHYR 578
LL + AL YR
Sbjct: 694 LLEIKTALNLYR 705
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 175 bits (444), Expect = 2e-42
Identities = 89/192 (46%), Positives = 123/192 (64%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H + +EFQRVR+F+ ++ +L + TWA E+FH +QTGM + PA +D G +F
Sbjct: 2004 HGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFA 2063
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGRL 362
+FMH S+ GN+ HF L V GP YKP + +VST PLK G G VP++ G GIG L
Sbjct: 2064 RFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNL 2123
Query: 363 PTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATE 542
PT +WV F + ++L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A +
Sbjct: 2124 PTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAK 2183
Query: 543 LLNQRDALVHYR 578
LL + AL YR
Sbjct: 2184 LLEIKTALNLYR 2195
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 96.3 bits (238), Expect = 2e-18
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D EF +RSF+V+++P D TW FH QQ G + + P + ++ + +
Sbjct: 1688 HQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTD 1746
Query: 183 KFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYG 344
K M ++ G + H + + V GP + + C++ F+VST PL G H+P++ G
Sbjct: 1747 KKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECG 1805
Query: 345 GGIGRLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIA 524
G+GR+P++ WV F ++++ + +IY + AGK IIF APY+A A I+
Sbjct: 1806 DGLGRMPSQDWVRRF---RRIRHVQIRVIY----DAYAAGKTIIFKDVAPYIAGWTAAIS 1858
Query: 525 FGSATELLNQRDALVHY 575
F A + + RD L Y
Sbjct: 1859 FACAQQ-YSYRDMLNRY 1874
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D ++F VR+F+V ++ W +C SFH Q + P L+ V
Sbjct: 492 HGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDA 549
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G G
Sbjct: 550 KFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTG 609
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ +LK+ + +R+ GK I+F P+V+ AA I+FG++
Sbjct: 610 QQATEASIRAY---RRLKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTS 662
Query: 537 TELLNQRDALVHY 575
+N +D L++Y
Sbjct: 663 VG-MNAQDLLINY 674
[11][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
HND ++F VR+F+V ++ W +C +FH Q + P L+ V
Sbjct: 766 HNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDV 823
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G+G
Sbjct: 824 KFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVG 883
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ K + +R+ GK I+F P+V+ AA I+FG+
Sbjct: 884 QQATEASIFAYRKYKDHRVRH-------MRDSWNEGKTIVFRCEGPFVSGWAAAISFGT- 935
Query: 537 TELLNQRDALVHY 575
T +N +D L +Y
Sbjct: 936 TVGMNAQDLLRNY 948
[12][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 70.1 bits (170), Expect = 1e-10
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D ++F VR+F+V ++ W +C SFH Q + P L+ V
Sbjct: 766 HGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDA 823
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G G
Sbjct: 824 KFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTG 883
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ +LK+ + +R+ GK ++F P+V+ AA I+FG++
Sbjct: 884 QQATEASIRAY---RRLKDHR----VRHMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTS 936
Query: 537 TELLNQRDALVHY 575
+N +D L++Y
Sbjct: 937 VG-MNAQDLLINY 948
[13][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D ++F VR+F+V ++ W +C SFH Q + P L+ V
Sbjct: 766 HGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDA 823
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G G
Sbjct: 824 KFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTG 883
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ +LK+ + +R+ GK I+F P+V+ AA I+FG++
Sbjct: 884 QQATEASIRAY---RRLKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTS 936
Query: 537 TELLNQRDALVHY 575
+N +D L++Y
Sbjct: 937 VG-MNAQDLLINY 948
[14][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D ++F VR+F+V ++ W +C SFH Q + P L+ V
Sbjct: 1978 HGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDA 2035
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G G
Sbjct: 2036 KFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTG 2095
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ +LK+ + +R+ GK I+F P+V+ AA I+FG++
Sbjct: 2096 QQATEASIRAY---RRLKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTS 2148
Query: 537 TELLNQRDALVHY 575
+N +D L++Y
Sbjct: 2149 VG-MNAQDLLINY 2160
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q155U1_9SECO
Length = 711
Score = 69.7 bits (169), Expect = 2e-10
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D ++F VR+F+V ++ W +C SFH Q + P L+ V
Sbjct: 492 HGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDV 549
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G G
Sbjct: 550 KFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTG 609
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ +LK+ + +R+ GK I+F P+V+ AA I+FG++
Sbjct: 610 QQATEASIRAY---RRLKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGAS 662
Query: 537 TELLNQRDALVHY 575
+N +D L++Y
Sbjct: 663 IG-MNAQDLLINY 674
[16][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 69.3 bits (168), Expect = 2e-10
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H D ++F VR+F+V ++ W +C SFH Q + P L+ V
Sbjct: 766 HGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDA 823
Query: 183 KFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGIG 356
KF+ L V GP ++ + D +VS LK G + P+ YG G G
Sbjct: 824 KFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTG 883
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
+ T++ + ++ +LK+ + +R+ GK ++F P+V+ AA I+FG++
Sbjct: 884 QQATEASIRAY---RRLKDHR----VRHMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTS 936
Query: 537 TELLNQRDALVHY 575
+N +D L++Y
Sbjct: 937 VG-MNAQDLLINY 948
[17][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 68.9 bits (167), Expect = 3e-10
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPL-LVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDF 179
H D + F VR+F++ +LP + TW ++FH Q +G P +++ GV F
Sbjct: 1944 HQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVGF 2003
Query: 180 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEH-VPIKYGGGIG 356
F+ + H L + G Y +E+ ++S L G + H + +K G GIG
Sbjct: 2004 ASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNAHKLELKCGDGIG 2063
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
RLP+ K+S L ++ L ++ LE K ++ PY+ A G +
Sbjct: 2064 RLPS--------KASVLAQRNPGIVMRLCKQALEEKKTLVIRDERPYIGGWAMACICGES 2115
[18][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 65.5 bits (158), Expect = 3e-09
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H + F +R F+ R +W +FH GQ +G+ P + D VD
Sbjct: 484 HGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGG 539
Query: 183 KFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGILGE--HVPIKY 341
+ + +A F T + + +CGP + E F+VST PL+ G H I+Y
Sbjct: 540 RLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEY 599
Query: 342 G-GGIGRLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAAL 518
G+GRLP++ WV F S+ A+ +R+ +GK I F PYVAN A
Sbjct: 600 PCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRDDPPYVANWCAA 652
Query: 519 IAF 527
I F
Sbjct: 653 IGF 655
[19][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 65.5 bits (158), Expect = 3e-09
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 8/183 (4%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPLLVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDFK 182
H + F +R F+ R +W +FH GQ +G+ P + D VD
Sbjct: 1871 HGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGG 1926
Query: 183 KFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGILGE--HVPIKY 341
+ + +A F T + + +CGP + E F+VST PL+ G H I+Y
Sbjct: 1927 RLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEY 1986
Query: 342 G-GGIGRLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAAL 518
G+GRLP++ WV F S+ A+ +R+ +GK I F PYVAN A
Sbjct: 1987 PCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRDDPPYVANWCAA 2039
Query: 519 IAF 527
I F
Sbjct: 2040 IGF 2042
[20][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 60.5 bits (145), Expect = 9e-08
Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 16/207 (7%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPL-LVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDF 179
H D F+ VR+F+ +LP + TW ESFH Q++G + P +++ G F
Sbjct: 1943 HGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLIEISHGAAF 2002
Query: 180 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGE-HVPIKYGGGIG 356
F + + H L + G Y E + ++S + G + + G GIG
Sbjct: 2003 ASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLPGDRNVFKLDLPCGDGIG 2062
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAAL------ 518
RLP+K +++ K L+ L + + K ++ PY+ A
Sbjct: 2063 RLPSKCSILNLRKPG--------LVMRLCKRAQDEKKTLVIRDERPYIGAWAVACICGES 2114
Query: 519 IAFGSATELL--------NQRDALVHY 575
FG + L NQR+ L Y
Sbjct: 2115 FGFGQQSVLALYANLLGPNQRNGLASY 2141
[21][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 60.1 bits (144), Expect = 1e-07
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 2/180 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPL-LVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDF 179
H D + + VR F++ +LP + TW + FH Q +G P +++ G F
Sbjct: 483 HQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASF 542
Query: 180 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGIG 356
F+ + + H L + G Y EE+ ++S L G I + +K G GIG
Sbjct: 543 ASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIG 602
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
RLP+K+ V+S K ++ L ++ K ++ PY+ A G +
Sbjct: 603 RLPSKASVLS--------QRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGES 654
[22][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 60.1 bits (144), Expect = 1e-07
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 2/180 (1%)
Frame = +3
Query: 3 HNDPKEFQRVRSFFVARLPL-LVDQFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDF 179
H D + + VR F++ +LP + TW + FH Q +G P +++ G F
Sbjct: 1942 HQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASF 2001
Query: 180 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGIG 356
F+ + + H L + G Y EE+ ++S L G I + +K G GIG
Sbjct: 2002 ASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIG 2061
Query: 357 RLPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSA 536
RLP+K+ V+S K ++ L ++ K ++ PY+ A G +
Sbjct: 2062 RLPSKASVLS--------QRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGES 2113
[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 58.9 bits (141), Expect = 3e-07
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 3/191 (1%)
Frame = +3
Query: 9 DPKEFQRVRSFFVARLPLLVD---QFRTWAYCESFHSGQQTGMLRHDPASVLDHMSGVDF 179
D +EF +R+F++ RLP+ + + W C + TG +PA VLD +
Sbjct: 1993 DREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPRC 2052
Query: 180 KKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGIGR 359
K FM + N + + VCGP + + + L G G + + G
Sbjct: 2053 KSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQIKPVHAATQGA 2112
Query: 360 LPTKSWVMSFGKSSKLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAT 539
+PT +V SF K + L E+G + F APY A I+F SA
Sbjct: 2113 MPTAKFVESFRSIKKRPELE------LAISAYESGSNLYFKGCAPYNDIWACAISFCSAF 2166
Query: 540 ELLNQRDALVH 572
Q+ L+H
Sbjct: 2167 GYA-QKQVLLH 2176