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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 314 bits (805), Expect = 3e-84
Identities = 143/191 (74%), Positives = 162/191 (84%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
LYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++
Sbjct: 464 LYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKA 523
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT
Sbjct: 524 LPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTE 583
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
+LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN
Sbjct: 584 MLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKN 643
Query: 542 AKGYLIYPLLR 574
GYLI+P+LR
Sbjct: 644 KLGYLIHPILR 654
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 314 bits (805), Expect = 3e-84
Identities = 143/191 (74%), Positives = 162/191 (84%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
LYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++
Sbjct: 1904 LYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKA 1963
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT
Sbjct: 1964 LPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTE 2023
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
+LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+ S LKN
Sbjct: 2024 MLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKN 2083
Query: 542 AKGYLIYPLLR 574
GYLI+P+LR
Sbjct: 2084 KLGYLIHPILR 2094
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 300 bits (768), Expect = 5e-80
Identities = 142/192 (73%), Positives = 159/192 (82%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
LYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ R
Sbjct: 464 LYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQR 523
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
LPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT
Sbjct: 524 LPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTE 583
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
+LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN
Sbjct: 584 MLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKN 643
Query: 542 AKGYLIYPLLRE 577
+KGYLI LLRE
Sbjct: 644 SKGYLITGLLRE 655
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 300 bits (768), Expect = 5e-80
Identities = 142/192 (73%), Positives = 159/192 (82%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
LYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ R
Sbjct: 1906 LYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQR 1965
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
LPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT
Sbjct: 1966 LPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTE 2025
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
+LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK S LKN
Sbjct: 2026 MLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKN 2085
Query: 542 AKGYLIYPLLRE 577
+KGYLI LLRE
Sbjct: 2086 SKGYLITGLLRE 2097
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 276 bits (706), Expect = 8e-73
Identities = 127/192 (66%), Positives = 154/192 (80%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++AR
Sbjct: 463 LHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIAR 522
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
LP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT
Sbjct: 523 LPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTP 582
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
+LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN
Sbjct: 583 ILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKN 641
Query: 542 AKGYLIYPLLRE 577
GY Y LL E
Sbjct: 642 NDGYACYKLLCE 653
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 276 bits (706), Expect = 8e-73
Identities = 127/192 (66%), Positives = 154/192 (80%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++AR
Sbjct: 1889 LHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIAR 1948
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
LP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT
Sbjct: 1949 LPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTP 2008
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
+LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+ S LKN
Sbjct: 2009 ILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKN 2067
Query: 542 AKGYLIYPLLRE 577
GY Y LL E
Sbjct: 2068 NDGYACYKLLCE 2079
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 160 bits (405), Expect = 7e-38
Identities = 85/191 (44%), Positives = 114/191 (59%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ +
Sbjct: 472 LHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKK 530
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
+ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF
Sbjct: 531 MNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQ 590
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
L V GP YKP + +VST PLK G G VP++ G G+G LPT WV F + + L +
Sbjct: 591 CLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVD 650
Query: 542 AKGYLIYPLLR 574
A GY I+ +R
Sbjct: 651 AYGYKIWGNVR 661
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 160 bits (405), Expect = 7e-38
Identities = 85/191 (44%), Positives = 114/191 (59%)
Frame = +2
Query: 2 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVAR 181
L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ +
Sbjct: 1962 LHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKK 2020
Query: 182 LPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTS 361
+ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF
Sbjct: 2021 MNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQ 2080
Query: 362 VLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKN 541
L V GP YKP + +VST PLK G G VP++ G G+G LPT WV F + + L +
Sbjct: 2081 CLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVD 2140
Query: 542 AKGYLIYPLLR 574
A GY I+ +R
Sbjct: 2141 AYGYKIWGNVR 2151
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 87.4 bits (215), Expect = 7e-16
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
DV+ L N AL+E++ H D EF +RSF+V+++P D TW FH +QQ G
Sbjct: 1669 DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHG 1727
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVST 421
+ + P + ++ + + K M ++ G + H + + V GP + + C++ F+VST
Sbjct: 1728 AMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVST 1786
Query: 422 EPLKMG--ILGEHVPIKYGGGVGRLPTKNWVMSF 517
PL G H+P++ G G+GR+P+++WV F
Sbjct: 1787 LPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRF 1820
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 84.3 bits (207), Expect = 6e-15
Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 250
D++++LV NVN AL+EL+LH D + F VR+F++ +LP + TW ++FH Q +
Sbjct: 1925 DMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLS 1984
Query: 251 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 430
G P +++ GV F F+ + H L + G Y +E+ ++S L
Sbjct: 1985 GESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSL 2044
Query: 431 KMGILGEH-VPIKYGGGVGRLPTKNWVMS 514
G + H + +K G G+GRLP+K V++
Sbjct: 2045 LPGDVNAHKLELKCGDGIGRLPSKASVLA 2073
[11][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 79.7 bits (195), Expect = 1e-13
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 250
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +
Sbjct: 464 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 523
Query: 251 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 430
G P +++ G F F+ + + H L + G Y EE+ ++S L
Sbjct: 524 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 583
Query: 431 KMG-ILGEHVPIKYGGGVGRLPTKNWVMS 514
G I + +K G G+GRLP+K V+S
Sbjct: 584 LPGDINAVKLTLKCGDGIGRLPSKASVLS 612
[12][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 79.7 bits (195), Expect = 1e-13
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 250
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +
Sbjct: 1923 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 1982
Query: 251 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 430
G P +++ G F F+ + + H L + G Y EE+ ++S L
Sbjct: 1983 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 2042
Query: 431 KMG-ILGEHVPIKYGGGVGRLPTKNWVMS 514
G I + +K G G+GRLP+K V+S
Sbjct: 2043 LPGDINAVKLTLKCGDGIGRLPSKASVLS 2071
[13][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 78.6 bits (192), Expect = 3e-13
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQT 250
D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + TW ESFH Q++
Sbjct: 1924 DMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKS 1983
Query: 251 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 430
G + P +++ G F F + + H L + G Y E + ++S +
Sbjct: 1984 GESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSV 2043
Query: 431 KMGILGE-HVPIKYGGGVGRLPTKNWVMSFGK 523
G + + G G+GRLP+K +++ K
Sbjct: 2044 LPGDRNVFKLDLPCGDGIGRLPSKCSILNLRK 2075
[14][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 70.5 bits (171), Expect = 9e-11
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 2/152 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
+ + L LN VAL ELYLHND ++F VR+F+V ++ W C +FH Q +
Sbjct: 747 NTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQ 806
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTS 864
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSFGK 523
LK G + P+ YG GVG+ T+ + ++ K
Sbjct: 865 LKANEGGLYFPVDYGEGVGQQATEASIFAYRK 896
[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 68.2 bits (165), Expect = 4e-10
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 473 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 532
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 533 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 590
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
LK G + P+ YG G G+ T+ + ++
Sbjct: 591 LKANEGGLYFPVDYGEGTGQQATEASIRAY 620
[16][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 68.2 bits (165), Expect = 4e-10
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
LK G + P+ YG G G+ T+ + ++
Sbjct: 865 LKANEGGLYFPVDYGEGTGQQATEASIRAY 894
[17][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 68.2 bits (165), Expect = 4e-10
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
LK G + P+ YG G G+ T+ + ++
Sbjct: 865 LKANEGGLYFPVDYGEGTGQQATEASIRAY 894
[18][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 68.2 bits (165), Expect = 4e-10
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 2/150 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 1959 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 2018
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 2019 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 2076
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
LK G + P+ YG G G+ T+ + ++
Sbjct: 2077 LKANEGGLYFPVDYGEGTGQQATEASIRAY 2106
[19][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 67.8 bits (164), Expect = 6e-10
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 473 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQ 532
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 533 WKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTS 590
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
LK G + P+ YG G G+ T+ + ++
Sbjct: 591 LKANEGGLYFPVDYGEGTGQQATEASIRAY 620
[20][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 67.4 bits (163), Expect = 8e-10
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Frame = +2
Query: 74 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTG 253
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 254 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 427
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 428 LKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
LK G + P+ YG G G+ T+ + ++
Sbjct: 865 LKANEGGLYFPVDYGEGTGQQATEASIRAY 894
[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Frame = +2
Query: 62 SGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD---QFRTWAFCESF 232
S + D I L NV AL ELY D +EF +R+F++ RLP+ + + W C
Sbjct: 1968 SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEH 2027
Query: 233 HSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFI 412
++ TG +PA VLD + K FM + N + + VCGP + +
Sbjct: 2028 WRARYTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYT 2087
Query: 413 VSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSF 517
+ L G G + + G +PT +V SF
Sbjct: 2088 LCFNRLAAGETGVQIKPVHAATQGAMPTAKFVESF 2122
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 63.5 bits (153), Expect = 1e-08
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 8/152 (5%)
Frame = +2
Query: 98 NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 277
NV+ AL+ELYLH + F +R F+ R +W +FH Q +G+ P
Sbjct: 473 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 530
Query: 278 VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGI 442
+ D VD + + +A F T + + +CGP + E F+VST PL+
Sbjct: 531 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 588
Query: 443 LGE--HVPIKYG-GGVGRLPTKNWVMSFGKSS 529
G H I+Y GVGRLP+++WV F S+
Sbjct: 589 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSA 620
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 63.5 bits (153), Expect = 1e-08
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 8/152 (5%)
Frame = +2
Query: 98 NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 277
NV+ AL+ELYLH + F +R F+ R +W +FH Q +G+ P
Sbjct: 1860 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 1917
Query: 278 VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGI 442
+ D VD + + +A F T + + +CGP + E F+VST PL+
Sbjct: 1918 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 1975
Query: 443 LGE--HVPIKYG-GGVGRLPTKNWVMSFGKSS 529
G H I+Y GVGRLP+++WV F S+
Sbjct: 1976 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSA 2007