BB912640 ( RCE11937 )

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[1][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=POL1_BRSV
          Length = 2264

 Score =  338 bits (867), Expect = 2e-91
 Identities = 157/191 (82%), Positives = 176/191 (92%)
 Frame = +3

Query: 3    TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
            TVIF STGES+L+RWH+  MREEPGSEIV W APSLPSL  DLKDLFLEDKEVDLPNHFK
Sbjct: 1282 TVIFSSTGESQLIRWHKYMMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK 1341

Query: 183  TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
            T+GYVLR D+T+FHYD LDTYA+VDKTPLPLKGV+GN+LY+HEIPEKI FHYESRNDDCG
Sbjct: 1342 TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCG 1401

Query: 363  MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
            MI+ CQI+GKM+VVG+LVAGKDKTSWADI+PP TLAEL+SQI+YIP+FGEA+DGFFK GY
Sbjct: 1402 MIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKAGY 1461

Query: 543  VPHAQAPTLPK 575
            VP A APTLPK
Sbjct: 1462 VPMADAPTLPK 1472

[2][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
            RepID=POL1_TBRVM
          Length = 2266

 Score =  337 bits (865), Expect = 3e-91
 Identities = 157/191 (82%), Positives = 175/191 (91%)
 Frame = +3

Query: 3    TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
            TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L  DLKDLFLEDKEVDLPNHFK
Sbjct: 1284 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 1343

Query: 183  TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
            T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYESRNDDCG
Sbjct: 1344 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCG 1403

Query: 363  MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
            MI+ CQIRGKM+VVG+LVAGKDKTSWADI+PP +LAELKSQIDYIPEFGEA DG+FK GY
Sbjct: 1404 MIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELKSQIDYIPEFGEACDGYFKAGY 1463

Query: 543  VPHAQAPTLPK 575
            V  ++APTLPK
Sbjct: 1464 VHKSEAPTLPK 1474

[3][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=POL1_GCMV
          Length = 2252

 Score =  294 bits (753), Expect = 3e-78
 Identities = 140/191 (73%), Positives = 165/191 (86%)
 Frame = +3

Query: 3    TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
            +V+F STGES ++R+H  H+RE  GSE+V W APSLP LP DLK LFLED EV+LP++FK
Sbjct: 1268 SVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPSNFK 1327

Query: 183  TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
            ++GYVLR D  +FHYDTLDTYA+VDKTPL LKGV G+DLYIHEIPEKIVFHYESRN+DCG
Sbjct: 1328 SMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNNDCG 1387

Query: 363  MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
            M+LTCQ+ GKMKVVG+LVAGKDKTSWA ILP   LAELKSQI+YIPEFGEA +G+FKVG+
Sbjct: 1388 MLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELKSQIEYIPEFGEAEEGYFKVGH 1447

Query: 543  VPHAQAPTLPK 575
            V   +APT+PK
Sbjct: 1448 VSPKEAPTMPK 1458

[4][TOP]
>UniRef100_UPI00003FE52B cysteine protease n=1 Tax=Beet ringspot virus RepID=UPI00003FE52B
          Length = 210

 Score =  286 bits (733), Expect = 6e-76
 Identities = 132/159 (83%), Positives = 148/159 (93%)
 Frame = +3

Query: 3   TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
           TVIF STGES+L+RWH+ HMREEPGSEIV W APSLPSL  DLKDLFLEDKEVDLPNHFK
Sbjct: 52  TVIFSSTGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK 111

Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
           T+GYVLR D+T+FHYD LDTYA+VDKTPLPLKGV+GN+LY+HEIPEKI FHYESRNDDCG
Sbjct: 112 TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCG 171

Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
           MI+ CQI+GKM+VVG+LVAGKDKTSWADI+PP TLAEL+
Sbjct: 172 MIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQ 210

[5][TOP]
>UniRef100_UPI000034ED07 Pro n=1 Tax=Tomato black ring virus RepID=UPI000034ED07
          Length = 210

 Score =  285 bits (730), Expect = 1e-75
 Identities = 132/159 (83%), Positives = 147/159 (92%)
 Frame = +3

Query: 3   TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
           TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L  DLKDLFLEDKEVDLPNHFK
Sbjct: 52  TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 111

Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
           T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYESRNDDCG
Sbjct: 112 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCG 171

Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
           MI+ CQIRGKM+VVG+LVAGKDKTSWADI+PP +LAELK
Sbjct: 172 MIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELK 210

[6][TOP]
>UniRef100_UPI00017F0C93 cysteine protease n=1 Tax=Grapevine chrome mosaic virus
           RepID=UPI00017F0C93
          Length = 210

 Score =  246 bits (628), Expect = 9e-64
 Identities = 118/159 (74%), Positives = 137/159 (86%)
 Frame = +3

Query: 3   TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
           +V+F STGES ++R+H  H+RE  GSE+V W APSLP LP DLK LFLED EV+LP++FK
Sbjct: 52  SVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPSNFK 111

Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
           ++GYVLR D  +FHYDTLDTYA+VDKTPL LKGV G+DLYIHEIPEKIVFHYESRN+DCG
Sbjct: 112 SMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNNDCG 171

Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
           M+LTCQ+ GKMKVVG+LVAGKDKTSWA ILP   LAELK
Sbjct: 172 MLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELK 210

[7][TOP]
>UniRef100_Q88484 Proteinase (Fragment) n=1 Tax=Tomato black ring virus
           RepID=Q88484_9SECO
          Length = 154

 Score =  203 bits (517), Expect = 7e-51
 Identities = 93/113 (82%), Positives = 103/113 (91%)
 Frame = +3

Query: 3   TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
           TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L  DLKDLFLEDKEVDLPNHFK
Sbjct: 42  TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 101

Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYE 341
           T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYE
Sbjct: 102 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYE 154

[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=POL1_CNSV
          Length = 2336

 Score =  164 bits (415), Expect = 4e-39
 Identities = 83/191 (43%), Positives = 119/191 (62%)
 Frame = +3

Query: 3    TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
            T I+L+TGES ++ ++R  ++E P  E   W A  +  LP   KD FLE  E +L   F+
Sbjct: 1332 TCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFE 1391

Query: 183  TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
              GYVLR D T+F    L T+A V   P  ++G +  + Y++E+P  I F Y+SRN+DCG
Sbjct: 1392 LEGYVLRPDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCG 1451

Query: 363  MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
            M+   Q+ GK K+VGLLVAG D+ +WAD LP   +AE+KSQI+Y  + G   +G+ K+GY
Sbjct: 1452 MVCLAQVGGKKKIVGLLVAGVDQQTWADNLPNPCMAEMKSQIEYEFKLGAHTEGYTKLGY 1511

Query: 543  VPHAQAPTLPK 575
            +   + P LPK
Sbjct: 1512 LTKDKTPHLPK 1522

[9][TOP]
>UniRef100_UPI00003FE52E cysteine protease n=1 Tax=Cycas necrotic stunt virus
           RepID=UPI00003FE52E
          Length = 210

 Score =  139 bits (351), Expect = 1e-31
 Identities = 70/159 (44%), Positives = 99/159 (62%)
 Frame = +3

Query: 3   TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
           T I+L+TGES ++ ++R  ++E P  E   W A  +  LP   KD FLE  E +L   F+
Sbjct: 52  TCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFE 111

Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
             GYVLR D T+F    L T+A V   P  ++G +  + Y++E+P  I F Y+SRN+DCG
Sbjct: 112 LEGYVLRPDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCG 171

Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
           M+   Q+ GK K+VGLLVAG D+ +WAD LP   +AE+K
Sbjct: 172 MVCLAQVGGKKKIVGLLVAGVDQQTWADNLPNPCMAEMK 210

[10][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
            RepID=POL1_GFLV
          Length = 2284

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 46/169 (27%), Positives = 88/169 (52%)
 Frame = +3

Query: 66   EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245
            E P +E+V +  P L +LP   +  F++D +  +  +      V R +D    +     Y
Sbjct: 1323 EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWSKY 1382

Query: 246  ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425
            A+       LK   G ++Y ++I   IV+ +E++  DCG +    I+G  KV+ +LV+G 
Sbjct: 1383 ATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGN 1442

Query: 426  DKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGYVPHAQAPTLP 572
               +++ ++P  + + ++ ++ Y+PE G    G+ KVGY+  + AP +P
Sbjct: 1443 RGVTYSSVIPNYSSSFIRGEVPYVPEDGLVSRGYRKVGYLHASDAPHVP 1491

[11][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
            RepID=POL1_ARMVN
          Length = 2284

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 6/195 (3%)
 Frame = +3

Query: 6    VIFLSTGESKLVRWHRRHMR------EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDL 167
            VI+    E KLV   R+  R      E P +E+V +    L ++P   +  F++D +  +
Sbjct: 1296 VIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQI 1355

Query: 168  PNHFKTVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESR 347
              +      V R +D    +   + YAS       +K   G+ +Y ++I   I++ +E++
Sbjct: 1356 SPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAK 1415

Query: 348  NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGF 527
             +DCG I   +I+   KV+ +LV+G    +++ ++P  + + ++  + Y+PE G   +G+
Sbjct: 1416 RNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIPSYSSSFVRGDVPYVPEDGIKTNGY 1475

Query: 528  FKVGYVPHAQAPTLP 572
             KVGY+    AP +P
Sbjct: 1476 RKVGYLMAKDAPHVP 1490

[12][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
            Blight RepID=POL1_TRSVB
          Length = 2304

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
 Frame = +3

Query: 6    VIFLSTGESKLVRWHRRHMR--EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHF 179
            V   ST +   + W    +R  E+  +EI+ +  PS+P LP+  K  F  D E D P  F
Sbjct: 1321 VAHFSTRDVVEIHWEHDVVRKGEKKDTEIIQYRCPSIPELPSRCKKYFEYDLERDFPGPF 1380

Query: 180  KTVGYVLRTDDTSFHYDTLDTYASVDKT----PLPLKGVIGNDLYIHEIPEKIVFHYESR 347
                   R          L ++   D+     PL +    G D Y  EIP+ I +    +
Sbjct: 1381 TLDASCYRMQSPGKIDIELVSWTDHDRELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQ 1440

Query: 348  NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIP-EFGEAHDG 524
              DCG I   +I G+ ++VGL+++  DK +    L P  L      + Y+P E+ EA  G
Sbjct: 1441 LHDCGAICVAKIGGQHRIVGLVIS-TDKHNTGVGLLPSALHMTTCSLSYVPEEWEEAPRG 1499

Query: 525  FFKVGYVPHAQAPTLPK 575
              K+G+   ++ P +P+
Sbjct: 1500 LKKLGWNDRSELPHMPR 1516

[13][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
          Length = 2285

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 40/169 (23%), Positives = 87/169 (51%)
 Frame = +3

Query: 66   EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245
            E P +E+V +    L ++P   +  F++D +  +  +      V R ++    +   + Y
Sbjct: 1324 EFPENELVVFEHARLLTMPIKYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKY 1383

Query: 246  ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425
            A+       +    G+ +Y ++I   I++ +E++ +DCG I   +I+   KV+ +LV+G 
Sbjct: 1384 ATARSDVHTVVDEGGSAVYQNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGS 1443

Query: 426  DKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGYVPHAQAPTLP 572
               +++ ++P  + + ++  + Y+PE G   +G+ KVGY+    AP +P
Sbjct: 1444 GNVTYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRKVGYLMRKDAPHVP 1492

[14][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
           RepID=UPI0000163E03
          Length = 824

 Score = 60.1 bits (144), Expect = 1e-07
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +3

Query: 480 SQIDYIPEFGEAHDGFFKVGYVPHAQAPTLPK 575
           SQI+YIP+FGEA+DGFFK GYVP A APTLPK
Sbjct: 1   SQIEYIPKFGEAYDGFFKAGYVPMADAPTLPK 32

[15][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
            cherry RepID=POL1_RRVC
          Length = 2367

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
 Frame = +3

Query: 42   RWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPN--HFKTVGYVLRTDDT 215
            +W    + E   SEI  +    +PSL      ++  D ++D  N  +F T     R  D 
Sbjct: 1326 QWRASALTEYAESEICTYFDSRIPSLGKQAMKMY-SDSDLDALNVKYFSTRTLHFRLVDD 1384

Query: 216  SFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKM 395
                   D  A V  TP  +   I   +Y  EIP  I +  ES   DCG ++  ++RGK 
Sbjct: 1385 QVEKRHWDADACVISTPKTIVSTINGVIYRQEIPTAITYRRESVKHDCGALVFTEVRGKP 1444

Query: 396  KVVGLLVAGKDKTSWADILPPCTLAELKSQID---YIPEFGEAHDGFFKVGYVPHAQAP 563
            K VG+LV     T++    P   +       D   +  E G +  G+ K+G++     P
Sbjct: 1445 KAVGMLVGTLGGTTYVCKFPHIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQP 1503

[16][TOP]
>UniRef100_UPI00003FE539 protease n=1 Tax=Grapevine fanleaf virus RepID=UPI00003FE539
          Length = 220

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 34/130 (26%), Positives = 65/130 (50%)
 Frame = +3

Query: 66  EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245
           E P +E+V +  P L +LP   +  F++D +  +  +      V R +D    +     Y
Sbjct: 83  EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWSKY 142

Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425
           A+       LK   G ++Y ++I   IV+ +E++  DCG +    I+G  KV+ +LV+G 
Sbjct: 143 ATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGN 202

Query: 426 DKTSWADILP 455
              +++ ++P
Sbjct: 203 RGVTYSSVIP 212

[17][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
          Length = 824

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +3

Query: 480 SQIDYIPEFGEAHDGFFKVGYVPHAQAPTLPK 575
           SQIDYIPEFGEA DG+FK GYV  ++APTLPK
Sbjct: 1   SQIDYIPEFGEACDGYFKAGYVHKSEAPTLPK 32

[18][TOP]
>UniRef100_UPI00003FE536 cysteine protease n=1 Tax=Arabis mosaic virus RepID=UPI00003FE536
          Length = 219

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
 Frame = +3

Query: 6   VIFLSTGESKLVRWHRRHMR------EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDL 167
           VI+    E KLV   R+  R      E P +E+V +    L ++P   +  F++D +  +
Sbjct: 56  VIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQI 115

Query: 168 PNHFKTVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESR 347
             +      V R +D    +   + YAS       +K   G+ +Y ++I   I++ +E++
Sbjct: 116 SPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAK 175

Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILP 455
            +DCG I   +I+   KV+ +LV+G    +++ ++P
Sbjct: 176 RNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIP 211

[19][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
          Length = 2366

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 5/178 (2%)
 Frame = +3

Query: 45   WHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPN--HFKTVGYVLRTDDTS 218
            W    + E   SEI  +    +PSL      ++  D ++D  N  +F T     R  +  
Sbjct: 1326 WRASAITEYAESEICTYFDSRIPSLGKQAMKMY-SDSDLDALNVKYFATRTLHFRLVEDR 1384

Query: 219  FHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMK 398
                  D  A V  TP  +   +    Y  EIP  I +  ES   DCG ++  ++RGK K
Sbjct: 1385 VEKRHWDADACVLSTPKGIVSTVNGVKYRQEIPTSITYKRESVKHDCGALVFTEVRGKPK 1444

Query: 399  VVGLLVAGKDKTSWADILPPCTLAELKSQID---YIPEFGEAHDGFFKVGYVPHAQAP 563
             VG+LV      ++   LPP  +       D   +  E G +  G+ K+G++     P
Sbjct: 1445 AVGMLVGTLGGITYVCKLPPIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQP 1502

[20][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
            RepID=POL1_RCMV
          Length = 1864

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
 Frame = +3

Query: 42   RWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSF 221
            R+   +M     SE+  + +  L  +     DLF  D + +LP  F         D  S 
Sbjct: 1006 RYQPENMEYIEDSELCVYHSSCLEDISHSCWDLFCWDPDKELPKKFSA-------DFVSC 1058

Query: 222  HYDTLD-----TYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIR 386
             Y+T       T+A+VD   +     I +  Y + +   I +   +   DCG ++   + 
Sbjct: 1059 KYNTWTKSVEPTWANVDAEVIKEDFTICDGEYRNTVSTSIRYEAPTVMSDCGSMIITNVG 1118

Query: 387  GKMKVVGLLVAGKD-KTSWADILP---PCTLAE-LKSQIDYIPEFGEAHDGFFKVGYVPH 551
            GK K+VG+ VAG+D K   A +LP   PC  A+  +   ++ P   +A +G  +VG +  
Sbjct: 1119 GKTKIVGIHVAGRDNKIGMASLLPPLLPCAQAQGAEKYFNFYPIEYDAAEGIARVGELKP 1178

Query: 552  AQAPTLPK 575
                 LPK
Sbjct: 1179 KLYIPLPK 1186