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[1][TOP] >UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus RepID=POL1_BRSV Length = 2264 Score = 338 bits (867), Expect = 2e-91 Identities = 157/191 (82%), Positives = 176/191 (92%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 TVIF STGES+L+RWH+ MREEPGSEIV W APSLPSL DLKDLFLEDKEVDLPNHFK Sbjct: 1282 TVIFSSTGESQLIRWHKYMMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK 1341 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 T+GYVLR D+T+FHYD LDTYA+VDKTPLPLKGV+GN+LY+HEIPEKI FHYESRNDDCG Sbjct: 1342 TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCG 1401 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542 MI+ CQI+GKM+VVG+LVAGKDKTSWADI+PP TLAEL+SQI+YIP+FGEA+DGFFK GY Sbjct: 1402 MIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKAGY 1461 Query: 543 VPHAQAPTLPK 575 VP A APTLPK Sbjct: 1462 VPMADAPTLPK 1472 [2][TOP] >UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus RepID=POL1_TBRVM Length = 2266 Score = 337 bits (865), Expect = 3e-91 Identities = 157/191 (82%), Positives = 175/191 (91%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L DLKDLFLEDKEVDLPNHFK Sbjct: 1284 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 1343 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYESRNDDCG Sbjct: 1344 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCG 1403 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542 MI+ CQIRGKM+VVG+LVAGKDKTSWADI+PP +LAELKSQIDYIPEFGEA DG+FK GY Sbjct: 1404 MIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELKSQIDYIPEFGEACDGYFKAGY 1463 Query: 543 VPHAQAPTLPK 575 V ++APTLPK Sbjct: 1464 VHKSEAPTLPK 1474 [3][TOP] >UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus RepID=POL1_GCMV Length = 2252 Score = 294 bits (753), Expect = 3e-78 Identities = 140/191 (73%), Positives = 165/191 (86%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 +V+F STGES ++R+H H+RE GSE+V W APSLP LP DLK LFLED EV+LP++FK Sbjct: 1268 SVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPSNFK 1327 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 ++GYVLR D +FHYDTLDTYA+VDKTPL LKGV G+DLYIHEIPEKIVFHYESRN+DCG Sbjct: 1328 SMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNNDCG 1387 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542 M+LTCQ+ GKMKVVG+LVAGKDKTSWA ILP LAELKSQI+YIPEFGEA +G+FKVG+ Sbjct: 1388 MLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELKSQIEYIPEFGEAEEGYFKVGH 1447 Query: 543 VPHAQAPTLPK 575 V +APT+PK Sbjct: 1448 VSPKEAPTMPK 1458 [4][TOP] >UniRef100_UPI00003FE52B cysteine protease n=1 Tax=Beet ringspot virus RepID=UPI00003FE52B Length = 210 Score = 286 bits (733), Expect = 6e-76 Identities = 132/159 (83%), Positives = 148/159 (93%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 TVIF STGES+L+RWH+ HMREEPGSEIV W APSLPSL DLKDLFLEDKEVDLPNHFK Sbjct: 52 TVIFSSTGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK 111 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 T+GYVLR D+T+FHYD LDTYA+VDKTPLPLKGV+GN+LY+HEIPEKI FHYESRNDDCG Sbjct: 112 TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCG 171 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479 MI+ CQI+GKM+VVG+LVAGKDKTSWADI+PP TLAEL+ Sbjct: 172 MIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQ 210 [5][TOP] >UniRef100_UPI000034ED07 Pro n=1 Tax=Tomato black ring virus RepID=UPI000034ED07 Length = 210 Score = 285 bits (730), Expect = 1e-75 Identities = 132/159 (83%), Positives = 147/159 (92%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L DLKDLFLEDKEVDLPNHFK Sbjct: 52 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 111 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYESRNDDCG Sbjct: 112 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCG 171 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479 MI+ CQIRGKM+VVG+LVAGKDKTSWADI+PP +LAELK Sbjct: 172 MIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELK 210 [6][TOP] >UniRef100_UPI00017F0C93 cysteine protease n=1 Tax=Grapevine chrome mosaic virus RepID=UPI00017F0C93 Length = 210 Score = 246 bits (628), Expect = 9e-64 Identities = 118/159 (74%), Positives = 137/159 (86%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 +V+F STGES ++R+H H+RE GSE+V W APSLP LP DLK LFLED EV+LP++FK Sbjct: 52 SVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPSNFK 111 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 ++GYVLR D +FHYDTLDTYA+VDKTPL LKGV G+DLYIHEIPEKIVFHYESRN+DCG Sbjct: 112 SMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNNDCG 171 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479 M+LTCQ+ GKMKVVG+LVAGKDKTSWA ILP LAELK Sbjct: 172 MLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELK 210 [7][TOP] >UniRef100_Q88484 Proteinase (Fragment) n=1 Tax=Tomato black ring virus RepID=Q88484_9SECO Length = 154 Score = 203 bits (517), Expect = 7e-51 Identities = 93/113 (82%), Positives = 103/113 (91%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L DLKDLFLEDKEVDLPNHFK Sbjct: 42 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 101 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYE 341 T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYE Sbjct: 102 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYE 154 [8][TOP] >UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus RepID=POL1_CNSV Length = 2336 Score = 164 bits (415), Expect = 4e-39 Identities = 83/191 (43%), Positives = 119/191 (62%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 T I+L+TGES ++ ++R ++E P E W A + LP KD FLE E +L F+ Sbjct: 1332 TCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFE 1391 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 GYVLR D T+F L T+A V P ++G + + Y++E+P I F Y+SRN+DCG Sbjct: 1392 LEGYVLRPDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCG 1451 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542 M+ Q+ GK K+VGLLVAG D+ +WAD LP +AE+KSQI+Y + G +G+ K+GY Sbjct: 1452 MVCLAQVGGKKKIVGLLVAGVDQQTWADNLPNPCMAEMKSQIEYEFKLGAHTEGYTKLGY 1511 Query: 543 VPHAQAPTLPK 575 + + P LPK Sbjct: 1512 LTKDKTPHLPK 1522 [9][TOP] >UniRef100_UPI00003FE52E cysteine protease n=1 Tax=Cycas necrotic stunt virus RepID=UPI00003FE52E Length = 210 Score = 139 bits (351), Expect = 1e-31 Identities = 70/159 (44%), Positives = 99/159 (62%) Frame = +3 Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182 T I+L+TGES ++ ++R ++E P E W A + LP KD FLE E +L F+ Sbjct: 52 TCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFE 111 Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362 GYVLR D T+F L T+A V P ++G + + Y++E+P I F Y+SRN+DCG Sbjct: 112 LEGYVLRPDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCG 171 Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479 M+ Q+ GK K+VGLLVAG D+ +WAD LP +AE+K Sbjct: 172 MVCLAQVGGKKKIVGLLVAGVDQQTWADNLPNPCMAEMK 210 [10][TOP] >UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus RepID=POL1_GFLV Length = 2284 Score = 80.9 bits (198), Expect = 7e-14 Identities = 46/169 (27%), Positives = 88/169 (52%) Frame = +3 Query: 66 EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245 E P +E+V + P L +LP + F++D + + + V R +D + Y Sbjct: 1323 EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWSKY 1382 Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425 A+ LK G ++Y ++I IV+ +E++ DCG + I+G KV+ +LV+G Sbjct: 1383 ATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGN 1442 Query: 426 DKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGYVPHAQAPTLP 572 +++ ++P + + ++ ++ Y+PE G G+ KVGY+ + AP +P Sbjct: 1443 RGVTYSSVIPNYSSSFIRGEVPYVPEDGLVSRGYRKVGYLHASDAPHVP 1491 [11][TOP] >UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW RepID=POL1_ARMVN Length = 2284 Score = 79.0 bits (193), Expect = 2e-13 Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 6/195 (3%) Frame = +3 Query: 6 VIFLSTGESKLVRWHRRHMR------EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDL 167 VI+ E KLV R+ R E P +E+V + L ++P + F++D + + Sbjct: 1296 VIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQI 1355 Query: 168 PNHFKTVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESR 347 + V R +D + + YAS +K G+ +Y ++I I++ +E++ Sbjct: 1356 SPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAK 1415 Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGF 527 +DCG I +I+ KV+ +LV+G +++ ++P + + ++ + Y+PE G +G+ Sbjct: 1416 RNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIPSYSSSFVRGDVPYVPEDGIKTNGY 1475 Query: 528 FKVGYVPHAQAPTLP 572 KVGY+ AP +P Sbjct: 1476 RKVGYLMAKDAPHVP 1490 [12][TOP] >UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud Blight RepID=POL1_TRSVB Length = 2304 Score = 73.6 bits (179), Expect = 1e-11 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 7/197 (3%) Frame = +3 Query: 6 VIFLSTGESKLVRWHRRHMR--EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHF 179 V ST + + W +R E+ +EI+ + PS+P LP+ K F D E D P F Sbjct: 1321 VAHFSTRDVVEIHWEHDVVRKGEKKDTEIIQYRCPSIPELPSRCKKYFEYDLERDFPGPF 1380 Query: 180 KTVGYVLRTDDTSFHYDTLDTYASVDKT----PLPLKGVIGNDLYIHEIPEKIVFHYESR 347 R L ++ D+ PL + G D Y EIP+ I + + Sbjct: 1381 TLDASCYRMQSPGKIDIELVSWTDHDRELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQ 1440 Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIP-EFGEAHDG 524 DCG I +I G+ ++VGL+++ DK + L P L + Y+P E+ EA G Sbjct: 1441 LHDCGAICVAKIGGQHRIVGLVIS-TDKHNTGVGLLPSALHMTTCSLSYVPEEWEEAPRG 1499 Query: 525 FFKVGYVPHAQAPTLPK 575 K+G+ ++ P +P+ Sbjct: 1500 LKKLGWNDRSELPHMPR 1516 [13][TOP] >UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV Length = 2285 Score = 73.2 bits (178), Expect = 1e-11 Identities = 40/169 (23%), Positives = 87/169 (51%) Frame = +3 Query: 66 EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245 E P +E+V + L ++P + F++D + + + V R ++ + + Y Sbjct: 1324 EFPENELVVFEHARLLTMPIKYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKY 1383 Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425 A+ + G+ +Y ++I I++ +E++ +DCG I +I+ KV+ +LV+G Sbjct: 1384 ATARSDVHTVVDEGGSAVYQNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGS 1443 Query: 426 DKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGYVPHAQAPTLP 572 +++ ++P + + ++ + Y+PE G +G+ KVGY+ AP +P Sbjct: 1444 GNVTYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRKVGYLMRKDAPHVP 1492 [14][TOP] >UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus RepID=UPI0000163E03 Length = 824 Score = 60.1 bits (144), Expect = 1e-07 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = +3 Query: 480 SQIDYIPEFGEAHDGFFKVGYVPHAQAPTLPK 575 SQI+YIP+FGEA+DGFFK GYVP A APTLPK Sbjct: 1 SQIEYIPKFGEAYDGFFKAGYVPMADAPTLPK 32 [15][TOP] >UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain cherry RepID=POL1_RRVC Length = 2367 Score = 58.9 bits (141), Expect = 3e-07 Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 5/179 (2%) Frame = +3 Query: 42 RWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPN--HFKTVGYVLRTDDT 215 +W + E SEI + +PSL ++ D ++D N +F T R D Sbjct: 1326 QWRASALTEYAESEICTYFDSRIPSLGKQAMKMY-SDSDLDALNVKYFSTRTLHFRLVDD 1384 Query: 216 SFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKM 395 D A V TP + I +Y EIP I + ES DCG ++ ++RGK Sbjct: 1385 QVEKRHWDADACVISTPKTIVSTINGVIYRQEIPTAITYRRESVKHDCGALVFTEVRGKP 1444 Query: 396 KVVGLLVAGKDKTSWADILPPCTLAELKSQID---YIPEFGEAHDGFFKVGYVPHAQAP 563 K VG+LV T++ P + D + E G + G+ K+G++ P Sbjct: 1445 KAVGMLVGTLGGTTYVCKFPHIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQP 1503 [16][TOP] >UniRef100_UPI00003FE539 protease n=1 Tax=Grapevine fanleaf virus RepID=UPI00003FE539 Length = 220 Score = 56.6 bits (135), Expect = 1e-06 Identities = 34/130 (26%), Positives = 65/130 (50%) Frame = +3 Query: 66 EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245 E P +E+V + P L +LP + F++D + + + V R +D + Y Sbjct: 83 EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWSKY 142 Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425 A+ LK G ++Y ++I IV+ +E++ DCG + I+G KV+ +LV+G Sbjct: 143 ATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGN 202 Query: 426 DKTSWADILP 455 +++ ++P Sbjct: 203 RGVTYSSVIP 212 [17][TOP] >UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08 Length = 824 Score = 56.6 bits (135), Expect = 1e-06 Identities = 25/32 (78%), Positives = 28/32 (87%) Frame = +3 Query: 480 SQIDYIPEFGEAHDGFFKVGYVPHAQAPTLPK 575 SQIDYIPEFGEA DG+FK GYV ++APTLPK Sbjct: 1 SQIDYIPEFGEACDGYFKAGYVHKSEAPTLPK 32 [18][TOP] >UniRef100_UPI00003FE536 cysteine protease n=1 Tax=Arabis mosaic virus RepID=UPI00003FE536 Length = 219 Score = 55.8 bits (133), Expect = 2e-06 Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 6/156 (3%) Frame = +3 Query: 6 VIFLSTGESKLVRWHRRHMR------EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDL 167 VI+ E KLV R+ R E P +E+V + L ++P + F++D + + Sbjct: 56 VIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQI 115 Query: 168 PNHFKTVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESR 347 + V R +D + + YAS +K G+ +Y ++I I++ +E++ Sbjct: 116 SPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAK 175 Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILP 455 +DCG I +I+ KV+ +LV+G +++ ++P Sbjct: 176 RNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIP 211 [19][TOP] >UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO Length = 2366 Score = 55.8 bits (133), Expect = 2e-06 Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 5/178 (2%) Frame = +3 Query: 45 WHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPN--HFKTVGYVLRTDDTS 218 W + E SEI + +PSL ++ D ++D N +F T R + Sbjct: 1326 WRASAITEYAESEICTYFDSRIPSLGKQAMKMY-SDSDLDALNVKYFATRTLHFRLVEDR 1384 Query: 219 FHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMK 398 D A V TP + + Y EIP I + ES DCG ++ ++RGK K Sbjct: 1385 VEKRHWDADACVLSTPKGIVSTVNGVKYRQEIPTSITYKRESVKHDCGALVFTEVRGKPK 1444 Query: 399 VVGLLVAGKDKTSWADILPPCTLAELKSQID---YIPEFGEAHDGFFKVGYVPHAQAP 563 VG+LV ++ LPP + D + E G + G+ K+G++ P Sbjct: 1445 AVGMLVGTLGGITYVCKLPPIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQP 1502 [20][TOP] >UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus RepID=POL1_RCMV Length = 1864 Score = 55.1 bits (131), Expect = 4e-06 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 10/188 (5%) Frame = +3 Query: 42 RWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSF 221 R+ +M SE+ + + L + DLF D + +LP F D S Sbjct: 1006 RYQPENMEYIEDSELCVYHSSCLEDISHSCWDLFCWDPDKELPKKFSA-------DFVSC 1058 Query: 222 HYDTLD-----TYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIR 386 Y+T T+A+VD + I + Y + + I + + DCG ++ + Sbjct: 1059 KYNTWTKSVEPTWANVDAEVIKEDFTICDGEYRNTVSTSIRYEAPTVMSDCGSMIITNVG 1118 Query: 387 GKMKVVGLLVAGKD-KTSWADILP---PCTLAE-LKSQIDYIPEFGEAHDGFFKVGYVPH 551 GK K+VG+ VAG+D K A +LP PC A+ + ++ P +A +G +VG + Sbjct: 1119 GKTKIVGIHVAGRDNKIGMASLLPPLLPCAQAQGAEKYFNFYPIEYDAAEGIARVGELKP 1178 Query: 552 AQAPTLPK 575 LPK Sbjct: 1179 KLYIPLPK 1186