[UP]
[1][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 338 bits (867), Expect = 2e-91
Identities = 157/191 (82%), Positives = 176/191 (92%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
TVIF STGES+L+RWH+ MREEPGSEIV W APSLPSL DLKDLFLEDKEVDLPNHFK
Sbjct: 1282 TVIFSSTGESQLIRWHKYMMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK 1341
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
T+GYVLR D+T+FHYD LDTYA+VDKTPLPLKGV+GN+LY+HEIPEKI FHYESRNDDCG
Sbjct: 1342 TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCG 1401
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
MI+ CQI+GKM+VVG+LVAGKDKTSWADI+PP TLAEL+SQI+YIP+FGEA+DGFFK GY
Sbjct: 1402 MIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQSQIEYIPKFGEAYDGFFKAGY 1461
Query: 543 VPHAQAPTLPK 575
VP A APTLPK
Sbjct: 1462 VPMADAPTLPK 1472
[2][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 337 bits (865), Expect = 3e-91
Identities = 157/191 (82%), Positives = 175/191 (91%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L DLKDLFLEDKEVDLPNHFK
Sbjct: 1284 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 1343
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYESRNDDCG
Sbjct: 1344 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCG 1403
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
MI+ CQIRGKM+VVG+LVAGKDKTSWADI+PP +LAELKSQIDYIPEFGEA DG+FK GY
Sbjct: 1404 MIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELKSQIDYIPEFGEACDGYFKAGY 1463
Query: 543 VPHAQAPTLPK 575
V ++APTLPK
Sbjct: 1464 VHKSEAPTLPK 1474
[3][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 294 bits (753), Expect = 3e-78
Identities = 140/191 (73%), Positives = 165/191 (86%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
+V+F STGES ++R+H H+RE GSE+V W APSLP LP DLK LFLED EV+LP++FK
Sbjct: 1268 SVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPSNFK 1327
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
++GYVLR D +FHYDTLDTYA+VDKTPL LKGV G+DLYIHEIPEKIVFHYESRN+DCG
Sbjct: 1328 SMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNNDCG 1387
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
M+LTCQ+ GKMKVVG+LVAGKDKTSWA ILP LAELKSQI+YIPEFGEA +G+FKVG+
Sbjct: 1388 MLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELKSQIEYIPEFGEAEEGYFKVGH 1447
Query: 543 VPHAQAPTLPK 575
V +APT+PK
Sbjct: 1448 VSPKEAPTMPK 1458
[4][TOP]
>UniRef100_UPI00003FE52B cysteine protease n=1 Tax=Beet ringspot virus RepID=UPI00003FE52B
Length = 210
Score = 286 bits (733), Expect = 6e-76
Identities = 132/159 (83%), Positives = 148/159 (93%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
TVIF STGES+L+RWH+ HMREEPGSEIV W APSLPSL DLKDLFLEDKEVDLPNHFK
Sbjct: 52 TVIFSSTGESQLIRWHKYHMREEPGSEIVTWLAPSLPSLSPDLKDLFLEDKEVDLPNHFK 111
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
T+GYVLR D+T+FHYD LDTYA+VDKTPLPLKGV+GN+LY+HEIPEKI FHYESRNDDCG
Sbjct: 112 TIGYVLRVDNTAFHYDLLDTYAAVDKTPLPLKGVVGNELYLHEIPEKITFHYESRNDDCG 171
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
MI+ CQI+GKM+VVG+LVAGKDKTSWADI+PP TLAEL+
Sbjct: 172 MIILCQIKGKMRVVGMLVAGKDKTSWADIMPPNTLAELQ 210
[5][TOP]
>UniRef100_UPI000034ED07 Pro n=1 Tax=Tomato black ring virus RepID=UPI000034ED07
Length = 210
Score = 285 bits (730), Expect = 1e-75
Identities = 132/159 (83%), Positives = 147/159 (92%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L DLKDLFLEDKEVDLPNHFK
Sbjct: 52 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 111
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYESRNDDCG
Sbjct: 112 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYESRNDDCG 171
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
MI+ CQIRGKM+VVG+LVAGKDKTSWADI+PP +LAELK
Sbjct: 172 MIMLCQIRGKMRVVGMLVAGKDKTSWADIMPPNSLAELK 210
[6][TOP]
>UniRef100_UPI00017F0C93 cysteine protease n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C93
Length = 210
Score = 246 bits (628), Expect = 9e-64
Identities = 118/159 (74%), Positives = 137/159 (86%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
+V+F STGES ++R+H H+RE GSE+V W APSLP LP DLK LFLED EV+LP++FK
Sbjct: 52 SVVFASTGESMMIRFHAYHIRENVGSEVVCWLAPSLPQLPCDLKGLFLEDAEVELPSNFK 111
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
++GYVLR D +FHYDTLDTYA+VDKTPL LKGV G+DLYIHEIPEKIVFHYESRN+DCG
Sbjct: 112 SMGYVLRQDSNAFHYDTLDTYAAVDKTPLVLKGVNGDDLYIHEIPEKIVFHYESRNNDCG 171
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
M+LTCQ+ GKMKVVG+LVAGKDKTSWA ILP LAELK
Sbjct: 172 MLLTCQLSGKMKVVGMLVAGKDKTSWACILPNPHLAELK 210
[7][TOP]
>UniRef100_Q88484 Proteinase (Fragment) n=1 Tax=Tomato black ring virus
RepID=Q88484_9SECO
Length = 154
Score = 203 bits (517), Expect = 7e-51
Identities = 93/113 (82%), Positives = 103/113 (91%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
TVIF STGES+L+RWH+ HMREE GSEIV W APSLP+L DLKDLFLEDKEVDLPNHFK
Sbjct: 42 TVIFASTGESQLIRWHKYHMREEHGSEIVTWLAPSLPALSPDLKDLFLEDKEVDLPNHFK 101
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYE 341
T+GYVLR D T+FHYDTLDTY +VDKTPLPLKGV+GN+LY+HEIPEKIVFHYE
Sbjct: 102 TIGYVLRVDSTAFHYDTLDTYGAVDKTPLPLKGVVGNELYLHEIPEKIVFHYE 154
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 164 bits (415), Expect = 4e-39
Identities = 83/191 (43%), Positives = 119/191 (62%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
T I+L+TGES ++ ++R ++E P E W A + LP KD FLE E +L F+
Sbjct: 1332 TCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFE 1391
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
GYVLR D T+F L T+A V P ++G + + Y++E+P I F Y+SRN+DCG
Sbjct: 1392 LEGYVLRPDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCG 1451
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGY 542
M+ Q+ GK K+VGLLVAG D+ +WAD LP +AE+KSQI+Y + G +G+ K+GY
Sbjct: 1452 MVCLAQVGGKKKIVGLLVAGVDQQTWADNLPNPCMAEMKSQIEYEFKLGAHTEGYTKLGY 1511
Query: 543 VPHAQAPTLPK 575
+ + P LPK
Sbjct: 1512 LTKDKTPHLPK 1522
[9][TOP]
>UniRef100_UPI00003FE52E cysteine protease n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52E
Length = 210
Score = 139 bits (351), Expect = 1e-31
Identities = 70/159 (44%), Positives = 99/159 (62%)
Frame = +3
Query: 3 TVIFLSTGESKLVRWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFK 182
T I+L+TGES ++ ++R ++E P E W A + LP KD FLE E +L F+
Sbjct: 52 TCIYLATGESVVLTFNRDDVQEFPNHETCMWQAAGMLQLPAKFKDCFLEKGETELAPAFE 111
Query: 183 TVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCG 362
GYVLR D T+F L T+A V P ++G + + Y++E+P I F Y+SRN+DCG
Sbjct: 112 LEGYVLRPDSTAFIMTILKTWARVQYEPFVVRGSLAKEKYVNELPTSIWFQYQSRNNDCG 171
Query: 363 MILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELK 479
M+ Q+ GK K+VGLLVAG D+ +WAD LP +AE+K
Sbjct: 172 MVCLAQVGGKKKIVGLLVAGVDQQTWADNLPNPCMAEMK 210
[10][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 80.9 bits (198), Expect = 7e-14
Identities = 46/169 (27%), Positives = 88/169 (52%)
Frame = +3
Query: 66 EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245
E P +E+V + P L +LP + F++D + + + V R +D + Y
Sbjct: 1323 EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWSKY 1382
Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425
A+ LK G ++Y ++I IV+ +E++ DCG + I+G KV+ +LV+G
Sbjct: 1383 ATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGN 1442
Query: 426 DKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGYVPHAQAPTLP 572
+++ ++P + + ++ ++ Y+PE G G+ KVGY+ + AP +P
Sbjct: 1443 RGVTYSSVIPNYSSSFIRGEVPYVPEDGLVSRGYRKVGYLHASDAPHVP 1491
[11][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 79.0 bits (193), Expect = 2e-13
Identities = 51/195 (26%), Positives = 98/195 (50%), Gaps = 6/195 (3%)
Frame = +3
Query: 6 VIFLSTGESKLVRWHRRHMR------EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDL 167
VI+ E KLV R+ R E P +E+V + L ++P + F++D + +
Sbjct: 1296 VIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQI 1355
Query: 168 PNHFKTVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESR 347
+ V R +D + + YAS +K G+ +Y ++I I++ +E++
Sbjct: 1356 SPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAK 1415
Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIPEFGEAHDGF 527
+DCG I +I+ KV+ +LV+G +++ ++P + + ++ + Y+PE G +G+
Sbjct: 1416 RNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIPSYSSSFVRGDVPYVPEDGIKTNGY 1475
Query: 528 FKVGYVPHAQAPTLP 572
KVGY+ AP +P
Sbjct: 1476 RKVGYLMAKDAPHVP 1490
[12][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 73.6 bits (179), Expect = 1e-11
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Frame = +3
Query: 6 VIFLSTGESKLVRWHRRHMR--EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHF 179
V ST + + W +R E+ +EI+ + PS+P LP+ K F D E D P F
Sbjct: 1321 VAHFSTRDVVEIHWEHDVVRKGEKKDTEIIQYRCPSIPELPSRCKKYFEYDLERDFPGPF 1380
Query: 180 KTVGYVLRTDDTSFHYDTLDTYASVDKT----PLPLKGVIGNDLYIHEIPEKIVFHYESR 347
R L ++ D+ PL + G D Y EIP+ I + +
Sbjct: 1381 TLDASCYRMQSPGKIDIELVSWTDHDRELRTRPLVIADPFGEDRYRREIPQYIQYGRPDQ 1440
Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILPPCTLAELKSQIDYIP-EFGEAHDG 524
DCG I +I G+ ++VGL+++ DK + L P L + Y+P E+ EA G
Sbjct: 1441 LHDCGAICVAKIGGQHRIVGLVIS-TDKHNTGVGLLPSALHMTTCSLSYVPEEWEEAPRG 1499
Query: 525 FFKVGYVPHAQAPTLPK 575
K+G+ ++ P +P+
Sbjct: 1500 LKKLGWNDRSELPHMPR 1516
[13][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 73.2 bits (178), Expect = 1e-11
Identities = 40/169 (23%), Positives = 87/169 (51%)
Frame = +3
Query: 66 EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245
E P +E+V + L ++P + F++D + + + V R ++ + + Y
Sbjct: 1324 EFPENELVVFEHARLLTMPIKYEKYFVDDPDRQISPNVAVKCCVARLEEGLPQFHFWNKY 1383
Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425
A+ + G+ +Y ++I I++ +E++ +DCG I +I+ KV+ +LV+G
Sbjct: 1384 ATARSDVHTVVDEGGSAVYQNKIRRHIIYAHEAKRNDCGAIAVAEIQRTPKVIAMLVSGS 1443
Query: 426 DKTSWADILPPCTLAELKSQIDYIPEFGEAHDGFFKVGYVPHAQAPTLP 572
+++ ++P + + ++ + Y+PE G +G+ KVGY+ AP +P
Sbjct: 1444 GNVTYSSVIPNYSSSFVRGDVPYVPEDGIKTNGYRKVGYLMRKDAPHVP 1492
[14][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 60.1 bits (144), Expect = 1e-07
Identities = 26/32 (81%), Positives = 29/32 (90%)
Frame = +3
Query: 480 SQIDYIPEFGEAHDGFFKVGYVPHAQAPTLPK 575
SQI+YIP+FGEA+DGFFK GYVP A APTLPK
Sbjct: 1 SQIEYIPKFGEAYDGFFKAGYVPMADAPTLPK 32
[15][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 58.9 bits (141), Expect = 3e-07
Identities = 48/179 (26%), Positives = 74/179 (41%), Gaps = 5/179 (2%)
Frame = +3
Query: 42 RWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPN--HFKTVGYVLRTDDT 215
+W + E SEI + +PSL ++ D ++D N +F T R D
Sbjct: 1326 QWRASALTEYAESEICTYFDSRIPSLGKQAMKMY-SDSDLDALNVKYFSTRTLHFRLVDD 1384
Query: 216 SFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKM 395
D A V TP + I +Y EIP I + ES DCG ++ ++RGK
Sbjct: 1385 QVEKRHWDADACVISTPKTIVSTINGVIYRQEIPTAITYRRESVKHDCGALVFTEVRGKP 1444
Query: 396 KVVGLLVAGKDKTSWADILPPCTLAELKSQID---YIPEFGEAHDGFFKVGYVPHAQAP 563
K VG+LV T++ P + D + E G + G+ K+G++ P
Sbjct: 1445 KAVGMLVGTLGGTTYVCKFPHIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQP 1503
[16][TOP]
>UniRef100_UPI00003FE539 protease n=1 Tax=Grapevine fanleaf virus RepID=UPI00003FE539
Length = 220
Score = 56.6 bits (135), Expect = 1e-06
Identities = 34/130 (26%), Positives = 65/130 (50%)
Frame = +3
Query: 66 EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSFHYDTLDTY 245
E P +E+V + P L +LP + F++D + + + V R +D + Y
Sbjct: 83 EFPENELVVFEHPHLLTLPIKYEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWSKY 142
Query: 246 ASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMKVVGLLVAGK 425
A+ LK G ++Y ++I IV+ +E++ DCG + I+G KV+ +LV+G
Sbjct: 143 ATARSEVHTLKDEGGGNVYQNKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGN 202
Query: 426 DKTSWADILP 455
+++ ++P
Sbjct: 203 RGVTYSSVIP 212
[17][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 56.6 bits (135), Expect = 1e-06
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +3
Query: 480 SQIDYIPEFGEAHDGFFKVGYVPHAQAPTLPK 575
SQIDYIPEFGEA DG+FK GYV ++APTLPK
Sbjct: 1 SQIDYIPEFGEACDGYFKAGYVHKSEAPTLPK 32
[18][TOP]
>UniRef100_UPI00003FE536 cysteine protease n=1 Tax=Arabis mosaic virus RepID=UPI00003FE536
Length = 219
Score = 55.8 bits (133), Expect = 2e-06
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Frame = +3
Query: 6 VIFLSTGESKLVRWHRRHMR------EEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDL 167
VI+ E KLV R+ R E P +E+V + L ++P + F++D + +
Sbjct: 56 VIYADGTERKLVWPGRQEDRSCKGYIEFPDNELVVFEHARLLTMPIKYEKFFVDDPDHQI 115
Query: 168 PNHFKTVGYVLRTDDTSFHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESR 347
+ V R +D + + YAS +K G+ +Y ++I I++ +E++
Sbjct: 116 SPNVAVKCCVARLEDGIPQFHFWNKYASARSDVHTIKDEGGSAVYQNKIRRYIIYAHEAK 175
Query: 348 NDDCGMILTCQIRGKMKVVGLLVAGKDKTSWADILP 455
+DCG I +I+ KV+ +LV+G +++ ++P
Sbjct: 176 RNDCGAIAVAEIQRTPKVLAMLVSGIGNVTYSSVIP 211
[19][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 5/178 (2%)
Frame = +3
Query: 45 WHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPN--HFKTVGYVLRTDDTS 218
W + E SEI + +PSL ++ D ++D N +F T R +
Sbjct: 1326 WRASAITEYAESEICTYFDSRIPSLGKQAMKMY-SDSDLDALNVKYFATRTLHFRLVEDR 1384
Query: 219 FHYDTLDTYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIRGKMK 398
D A V TP + + Y EIP I + ES DCG ++ ++RGK K
Sbjct: 1385 VEKRHWDADACVLSTPKGIVSTVNGVKYRQEIPTSITYKRESVKHDCGALVFTEVRGKPK 1444
Query: 399 VVGLLVAGKDKTSWADILPPCTLAELKSQID---YIPEFGEAHDGFFKVGYVPHAQAP 563
VG+LV ++ LPP + D + E G + G+ K+G++ P
Sbjct: 1445 AVGMLVGTLGGITYVCKLPPIEVDAFACVPDIRGFNLEAGVSTLGYSKLGWLDRRHQP 1502
[20][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 55.1 bits (131), Expect = 4e-06
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
Frame = +3
Query: 42 RWHRRHMREEPGSEIVNW*APSLPSLPTDLKDLFLEDKEVDLPNHFKTVGYVLRTDDTSF 221
R+ +M SE+ + + L + DLF D + +LP F D S
Sbjct: 1006 RYQPENMEYIEDSELCVYHSSCLEDISHSCWDLFCWDPDKELPKKFSA-------DFVSC 1058
Query: 222 HYDTLD-----TYASVDKTPLPLKGVIGNDLYIHEIPEKIVFHYESRNDDCGMILTCQIR 386
Y+T T+A+VD + I + Y + + I + + DCG ++ +
Sbjct: 1059 KYNTWTKSVEPTWANVDAEVIKEDFTICDGEYRNTVSTSIRYEAPTVMSDCGSMIITNVG 1118
Query: 387 GKMKVVGLLVAGKD-KTSWADILP---PCTLAE-LKSQIDYIPEFGEAHDGFFKVGYVPH 551
GK K+VG+ VAG+D K A +LP PC A+ + ++ P +A +G +VG +
Sbjct: 1119 GKTKIVGIHVAGRDNKIGMASLLPPLLPCAQAQGAEKYFNFYPIEYDAAEGIARVGELKP 1178
Query: 552 AQAPTLPK 575
LPK
Sbjct: 1179 KLYIPLPK 1186