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[1][TOP]
>UniRef100_A8W7G1 Putative RNA-dependent RNA polymerase n=1 Tax=Primula malacoides
virus China/Mar2007 RepID=A8W7G1_9VIRU
Length = 723
Score = 341 bits (875), Expect = 2e-92
Identities = 163/193 (84%), Positives = 172/193 (89%)
Frame = +3
Query: 3 LSKNMDYXFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRP 182
L K FN+ A K++LTD + YI +AN FFNDYPTLLFTRNHISKR G LKVRP
Sbjct: 269 LIKTYGLPFNMQFACPKSDLTDEQINLYISKANQFFNDYPTLLFTRNHISKRSGTLKVRP 328
Query: 183 VYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWS 362
VYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSN YI+++AR YSTFFSLDWS
Sbjct: 329 VYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNHYIDRLARPYSTFFSLDWS 388
Query: 363 SYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTW 542
SYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLY RMDNLL+FLHTW
Sbjct: 389 SYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYSRMDNLLYFLHTW 448
Query: 543 YNNMTFLLPDGYA 581
YNNMTFLLPDGYA
Sbjct: 449 YNNMTFLLPDGYA 461
[2][TOP]
>UniRef100_Q50LH7 Putative RNA-dependent RNA polymerase n=1 Tax=Rosellinia necatrix
partitivirus 1-W8 RepID=Q50LH7_9VIRU
Length = 709
Score = 247 bits (630), Expect = 5e-64
Identities = 114/163 (69%), Positives = 133/163 (81%), Gaps = 4/163 (2%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKP----SCCI 272
F + T+LFTRNHIS RDG LK RPVYAVDD FI+ ELM++FPL + AR P CI
Sbjct: 288 FMQKHVTMLFTRNHISDRDGFLKQRPVYAVDDFFILCELMISFPLHVMARYPINGIKSCI 347
Query: 273 MYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQ 452
MY ETIRGSNRY++ IARD+ +FF++DWSS+DQR+PRVITDI++TDFLR LIVINHGYQ
Sbjct: 348 MYSFETIRGSNRYLDSIARDFISFFTIDWSSFDQRVPRVITDIFWTDFLRQLIVINHGYQ 407
Query: 453 PTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
PTYEYP YPDL EH LY RM+NLLHFLHTWYNNM F+ DG+A
Sbjct: 408 PTYEYPAYPDLSEHDLYKRMNNLLHFLHTWYNNMVFVTADGFA 450
[3][TOP]
>UniRef100_Q6BE43 RNA-dependent RNA polymerase n=1 Tax=Helicobasidium mompa
partitivirus V1-1 RepID=Q6BE43_9VIRU
Length = 706
Score = 238 bits (607), Expect = 3e-61
Identities = 108/172 (62%), Positives = 130/172 (75%)
Frame = +3
Query: 66 DSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTI 245
D D FF PT+LFTRNHIS RDG LK RPVYAVDD+F+I+E+MLTFPL +
Sbjct: 275 DFDSSSIFSRMRFFFLTRPTMLFTRNHISDRDGNLKQRPVYAVDDLFLILEVMLTFPLLV 334
Query: 246 QARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRS 425
AR P CCIMYGLETIRGSN +I+ A+ + ++F++DWS YDQRLPR ITD+YYTDFL S
Sbjct: 335 MARLPECCIMYGLETIRGSNHWIDSTAKRFRSYFTIDWSQYDQRLPRCITDLYYTDFLES 394
Query: 426 LIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
LI+IN GYQPT +Y YPDL ++ RM NLLHFLHTWYNNM ++ DG+A
Sbjct: 395 LIIINFGYQPTADYADYPDLTPDMMFTRMTNLLHFLHTWYNNMVYVTADGFA 446
[4][TOP]
>UniRef100_Q5GHF1 RNA-dependent RNA polymerase n=1 Tax=Pleurotus ostreatus virus 1
RepID=Q5GHF1_9VIRU
Length = 706
Score = 235 bits (600), Expect = 2e-60
Identities = 105/160 (65%), Positives = 131/160 (81%)
Frame = +3
Query: 102 SFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYG 281
SF PT+LFTRNHIS RDG LK RPVYA+DD+FI +E M+TFPL + ARK CCIMYG
Sbjct: 286 SFILKRPTMLFTRNHISDRDGNLKQRPVYAMDDLFIRLESMITFPLHVMARKIECCIMYG 345
Query: 282 LETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTY 461
ETIRGSNR I++IA + +FF++DWS +DQRLPRVITDI+++DFL +IVI+HGYQPTY
Sbjct: 346 YETIRGSNRQIDKIASSFRSFFTIDWSGFDQRLPRVITDIFWSDFLERMIVISHGYQPTY 405
Query: 462 EYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
+YP+YPDL K++ RMDN+L FLHTWYNN+ F+ DG+A
Sbjct: 406 DYPSYPDLTPDKMFQRMDNILFFLHTWYNNLVFVTADGFA 445
[5][TOP]
>UniRef100_D0EIN9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pleurotus ostreatus
virus 1 RepID=D0EIN9_9VIRU
Length = 502
Score = 229 bits (584), Expect = 1e-58
Identities = 101/164 (61%), Positives = 130/164 (79%)
Frame = +3
Query: 90 DEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCC 269
D SF P +LFTRNHIS RDG LK RPVYA+DD+FI +E +TFPL + ARK CC
Sbjct: 282 DALRSFILKRPVMLFTRNHISDRDGNLKQRPVYAMDDLFIRLESKITFPLHVMARKIECC 341
Query: 270 IMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGY 449
IMYG ETIRGSNR I+++A +Y ++F++DWS +DQRLPRVITDI++TDFL +IVI+HGY
Sbjct: 342 IMYGYETIRGSNRQIDKLASNYKSYFTIDWSGFDQRLPRVITDIFWTDFLERMIVISHGY 401
Query: 450 QPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
QPT++YP+YPDL K++ RM N+L FLHTWYNN+ ++ DG+A
Sbjct: 402 QPTFDYPSYPDLTPDKMFQRMSNILTFLHTWYNNLVYVTADGFA 445
[6][TOP]
>UniRef100_Q9YX75 Putative RNA dependent RNA polymerase n=1 Tax=Fusarium poae virus 1
RepID=Q9YX75_9VIRU
Length = 673
Score = 218 bits (555), Expect = 3e-55
Identities = 97/159 (61%), Positives = 125/159 (78%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGL 284
FF PT+LFTRNHIS RDG LK RPVYAVDD+F+ IE MLTFP + ARKP CCIMYGL
Sbjct: 284 FFLQRPTMLFTRNHISDRDGILKQRPVYAVDDLFLTIESMLTFPAHVIARKPECCIMYGL 343
Query: 285 ETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYE 464
ETIRGSN+ +++IA DY +FF++DWS +DQRLP VI +++T+++ L+V+NHGY PTYE
Sbjct: 344 ETIRGSNQILDKIASDYKSFFTIDWSGFDQRLPWVIVKLFFTEYIPRLLVVNHGYAPTYE 403
Query: 465 YPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
YP+YPDL + + R+ NL+ FL TWY NM F+ DG++
Sbjct: 404 YPSYPDLTTNDMVSRLTNLITFLATWYFNMVFVTADGFS 442
[7][TOP]
>UniRef100_B2L075 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pleurotus ostreatus
virus 1 RepID=B2L075_9VIRU
Length = 185
Score = 189 bits (479), Expect = 2e-46
Identities = 80/128 (62%), Positives = 106/128 (82%)
Frame = +3
Query: 198 DIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQR 377
D+FI +E M+TFPL + ARK CCIMYG ETIRGSNR I+++A +Y +FF++DWS +DQR
Sbjct: 1 DLFIRLESMITFPLHVMARKIECCIMYGYETIRGSNRQIDKLASNYKSFFTIDWSGFDQR 60
Query: 378 LPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMT 557
LPRVITDI++TDFL +IVI+HGYQPT++YP+YPDL K++ RM N+L FLHTWYNN+
Sbjct: 61 LPRVITDIFWTDFLERMIVISHGYQPTFDYPSYPDLTPDKMFQRMSNILTFLHTWYNNLV 120
Query: 558 FLLPDGYA 581
++ DG+A
Sbjct: 121 YVTADGFA 128
[8][TOP]
>UniRef100_Q9Q9X2 Putative RNA-dependent RNA polymerase n=1 Tax=Rhizoctonia solani
virus 717 RepID=Q9Q9X2_9VIRU
Length = 730
Score = 188 bits (477), Expect = 3e-46
Identities = 87/159 (54%), Positives = 116/159 (72%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGL 284
F +PT++FTRNHISKRDG LKVRPVYAVD++F+ +E ML FP T+QARKP CCIMYGL
Sbjct: 315 FLKSFPTMMFTRNHISKRDGTLKVRPVYAVDELFLDLECMLAFPATVQARKPECCIMYGL 374
Query: 285 ETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYE 464
ETIRGSN ++ +A+ + +F ++DWS YDQRLP I ++ +L SL++I+HGY PT E
Sbjct: 375 ETIRGSNIKLDSLAQGFISFATIDWSGYDQRLPWFIVRAFFFIYLPSLLIISHGYMPTSE 434
Query: 465 YPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
Y ++ ++ R NL++F TWY NM FL DG+A
Sbjct: 435 YED-TSMNISDMFTRFFNLINFTATWYFNMVFLSADGFA 472
[9][TOP]
>UniRef100_Q85055 Atkinsonella hypoxylon virus segment 1 n=1 Tax=Atkinsonella
hypoxylon virus RepID=Q85055_AHV
Length = 665
Score = 130 bits (326), Expect = 1e-28
Identities = 73/182 (40%), Positives = 101/182 (55%), Gaps = 23/182 (12%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGL 284
+F PT L R+HISKRD LKVRPVY I+I IE ML +PL QARK CCIMYGL
Sbjct: 249 WFKKVPTELLVRSHISKRDN-LKVRPVYNAPMIYIRIECMLFYPLLAQARKRDCCIMYGL 307
Query: 285 ETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQP--- 455
ETIRG +E+I+ +++F +DWS +D P I++ ++ +L + I+I+HGY
Sbjct: 308 ETIRGGMNELERISNAFNSFLLIDWSRFDHLAPFTISNFFFKKWLPTKILIDHGYAQISN 367
Query: 456 --------------------TYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDG 575
+ EY T P+ ++ NL+ FL WY +M F+ PDG
Sbjct: 368 YHDHVHSFSAQAQSHGIPMISKEYQTPPEAT--VFAKKVLNLISFLERWYRDMVFVTPDG 425
Query: 576 YA 581
+A
Sbjct: 426 FA 427
[10][TOP]
>UniRef100_Q6X9T6 Putative RNA-dependent RNA polymerase n=1 Tax=Ceratocystis polonica
partitivirus RepID=Q6X9T6_9VIRU
Length = 663
Score = 125 bits (313), Expect = 3e-27
Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 21/180 (11%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGL 284
+F PT L R+HIS LKVRPV IF+ IE ML +PL Q RK C IMYGL
Sbjct: 253 WFKKIPTELLVRSHISNPK-KLKVRPVNNAPMIFLRIECMLFYPLLAQLRKQQCSIMYGL 311
Query: 285 ETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYE 464
ETIRG IE +A +S F +DWS +DQ +P + D++Y D++ +LI+++ GY +
Sbjct: 312 ETIRGGMMEIESLATRFSNFMMIDWSKFDQTVPFTLVDMFYQDWIPTLILVDSGYAKIHN 371
Query: 465 YPTY----------------PDLDEHK-----LYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
Y + +L+E ++++NLL F++TW+ M ++ PDG+A
Sbjct: 372 YNDHVHSFAAQARKLGVHGDSNLNEAPPEAAVFANKVENLLKFINTWFKEMVYITPDGFA 431
[11][TOP]
>UniRef100_Q5DM90 RNA-dependent RNA polymerase n=1 Tax=Ceratocystis resinifera virus
1 RepID=Q5DM90_9VIRU
Length = 663
Score = 125 bits (313), Expect = 3e-27
Identities = 68/180 (37%), Positives = 100/180 (55%), Gaps = 21/180 (11%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGL 284
+F PT L R+HIS LKVRPV IF+ IE ML +PL Q RK C IMYGL
Sbjct: 253 WFKKIPTELLVRSHISNPK-KLKVRPVNNAPMIFLRIECMLFYPLLAQLRKQQCSIMYGL 311
Query: 285 ETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYE 464
ETIRG IE +A +S F +DWS +DQ +P + D++Y D++ +LI+++ GY +
Sbjct: 312 ETIRGGMMEIESLATRFSNFMMIDWSKFDQTVPFTLVDMFYQDWIPTLILVDSGYAKIHN 371
Query: 465 YPTY----------------PDLDEHK-----LYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
Y + +L+E ++++NLL F++TW+ M ++ PDG+A
Sbjct: 372 YNDHVHSFAAQARKLGVHGNSNLNEAPPETAIFANKVENLLKFINTWFKEMVYITPDGFA 431
[12][TOP]
>UniRef100_Q6EM35 Putative RNA-dependent RNA polymerase n=1 Tax=Ceratocystis polonica
partitivirus RepID=Q6EM35_9VIRU
Length = 663
Score = 124 bits (310), Expect = 7e-27
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 21/180 (11%)
Frame = +3
Query: 105 FFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGL 284
+F PT L R+HIS LKVRPV IF+ IE ML +PL Q RK C IMYG
Sbjct: 253 WFKKIPTELLVRSHISNPK-KLKVRPVNNAPMIFLRIECMLFYPLLAQLRKQQCSIMYGF 311
Query: 285 ETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYE 464
ETIRG IE +A +S F +DWS +DQ +P + D++Y D++ +LI+I+ GY +
Sbjct: 312 ETIRGGMMEIESLATRFSNFMMIDWSKFDQTVPFTLVDMFYQDWIPTLILIDSGYAKIHN 371
Query: 465 YPTY----------------PDLDE-----HKLYHRMDNLLHFLHTWYNNMTFLLPDGYA 581
Y + +L+E ++++NLL F++TW+ M ++ PDG+A
Sbjct: 372 YNDHVHSFAAQARKLGVHGNSNLNEAPPEASVFANKVENLLKFINTWFKEMVYITPDGFA 431
[13][TOP]
>UniRef100_Q8QY51 Putative RNA dependent RNA polymerase n=1 Tax=Heterobasidion
annosum P-type partitivirus RepID=Q8QY51_9VIRU
Length = 734
Score = 97.1 bits (240), Expect = 9e-19
Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 31/184 (16%)
Frame = +3
Query: 120 PTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRG 299
PT+++ R+ ISK LKVRPVY +F+++E MLT L Q RKP CI++ ETIRG
Sbjct: 281 PTVMYVRSQISKIT-KLKVRPVYNAPMLFLMLEAMLTLGLMAQCRKPDNCILWSYETIRG 339
Query: 300 SNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPT--YEYPT 473
+ +I+ +++ F D+S +DQ P I ++ F+ +I ++ GYQ + Y
Sbjct: 340 GMHELHRISTEFNVFMGFDYSRFDQLAPFTIIYHFWATFIPMIIRVDRGYQQSTIYTKDQ 399
Query: 474 YPDLDEHKLYHRMD-----------------------------NLLHFLHTWYNNMTFLL 566
Y D K Y +D N+L F+ WY M F+
Sbjct: 400 YA-YDFEKKYDNLDKSEPKFQEFAKKSNNLFPKHVVAFSFVIFNILSFIWWWYVFMVFIT 458
Query: 567 PDGY 578
PDGY
Sbjct: 459 PDGY 462
[14][TOP]
>UniRef100_A7REC6 Putative RdRp n=1 Tax=Vicia faba partitivirus 1 RepID=A7REC6_9VIRU
Length = 576
Score = 79.7 bits (195), Expect = 2e-13
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Frame = +3
Query: 117 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQ--ARKPSCCIMYGLET 290
Y F R H+ + D P KVR V+ ++ ELM +PL + AR P +++G ET
Sbjct: 202 YWNTAFARQHLVEDDDPDKVRLVFGAPSTLLMAELMFIWPLQVSLLARGPQSPMLWGYET 261
Query: 291 IRGSNRYIEQIARD----YSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPT 458
+ G + A D YST +LDWS +D+ + + +R + GY PT
Sbjct: 262 LTGGWSRLFSWASDTMPRYSTVLTLDWSRFDKDARHTVIRDIHAMIMRPMFTFTEGYHPT 321
Query: 459 YEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDG 575
YP PD + R++NL +++ + +LPDG
Sbjct: 322 ISYPNAPDTNP----DRLENLWNWMTDAILTVPLMLPDG 356
[15][TOP]
>UniRef100_B2CGP3 Putative RNA-dependent RNA polymerase n=1 Tax=Beet cryptic virus 1
RepID=B2CGP3_9VIRU
Length = 616
Score = 59.7 bits (143), Expect = 2e-07
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Frame = +3
Query: 117 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQAR-KPSCC-IMYGLET 290
+P LL T+ I K+D P K+R ++ +II E ML + + PS +++G ET
Sbjct: 230 FPMLLHTKTAIVKQDDPNKMRTIWGASKPWIIAETMLYWEYIAWIKLNPSVTPMLWGYET 289
Query: 291 IRGSNRYIEQIARDY------STFFSLDWSSYDQRLP-RVITDIYYTDFLRSLIVINHGY 449
G ++ RD +F +LDWS +D+R ++ I YT R+ + + GY
Sbjct: 290 FTGG---WFRLNRDLFCGFLQRSFLTLDWSRFDKRAYFPLLRRILYT--ARTFLTFDEGY 344
Query: 450 QPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLPDG 575
PT+ PT+P D K R++ L +L T N +LPDG
Sbjct: 345 VPTHSAPTHPQWDHTKAI-RLERL--WLWTLENLFEAPIILPDG 385
[16][TOP]
>UniRef100_D0EP81 Putative truncated RNA-dependent RNA polymerase n=1 Tax=Beet
cryptic virus 1 RepID=D0EP81_9VIRU
Length = 559
Score = 59.3 bits (142), Expect = 2e-07
Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 9/162 (5%)
Frame = +3
Query: 117 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQAR-KPSCC-IMYGLET 290
+P LL T+ I K+D P K+R ++ +II E ML + + PS +++G ET
Sbjct: 174 FPMLLHTKTAIVKQDDPNKMRTIWGASKPWIIAETMLYWEYIAWIKLNPSVTPMLWGYET 233
Query: 291 IRGSNRYIEQIARDY------STFFSLDWSSYDQRLP-RVITDIYYTDFLRSLIVINHGY 449
G ++ RD +F +LDWS +D+R ++ I YT R+ + + GY
Sbjct: 234 FTGG---WFRLNRDLFCGFLQRSFLTLDWSRFDKRAYFPLLRRILYT--ARTFLTFDEGY 288
Query: 450 QPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDG 575
PT+ PT+P D K L L + +LPDG
Sbjct: 289 VPTHSAPTHPQWDHTKAIRHERLWLWTLENLF-EAPIILPDG 329
[17][TOP]
>UniRef100_C0STM0 RNA-dependent RNA polymerase n=1 Tax=Flammulina velutipes browning
virus RepID=C0STM0_9VIRU
Length = 580
Score = 59.3 bits (142), Expect = 2e-07
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Frame = +3
Query: 117 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQAR-KPSCCIMYGLETI 293
YP + T++ I P KVR ++ V + +++E M +PL R + +++G ET+
Sbjct: 199 YPINIHTKSAIIGIHDPNKVRTIFGVPKLTVMVEAMFFWPLFRYYRFEQQSPLLWGYETM 258
Query: 294 RGS----NRYIEQIARDYSTFFSLDWSSYDQR-LPRVITDIYYTDFLRSLIVINHGYQPT 458
G N + + SLDWS +D R L VI D+Y ++S N+GY PT
Sbjct: 259 LGGWYKLNHELHLNPFYQGSILSLDWSFFDGRALFSVINDLYSDKGVKSYFEFNNGYIPT 318
Query: 459 YEYP---TYPDLDEHKLYHRMDNLLHF 530
+YP T+P H L+ M L F
Sbjct: 319 VDYPDSSTHPQ-KLHNLWDWMLTALKF 344
[18][TOP]
>UniRef100_Q4KUU4 Putative RNA dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=Q4KUU4_9VIRU
Length = 616
Score = 58.5 bits (140), Expect = 4e-07
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Frame = +3
Query: 54 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 227
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 228 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 395
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 396 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLP 569
I YT ++S + GY PT+ P +P ++ K +++ L +L T N +LP
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDKT-DKLERL--WLWTLENLFEAPIILP 383
Query: 570 DG 575
DG
Sbjct: 384 DG 385
[19][TOP]
>UniRef100_B2M1T3 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=B2M1T3_9VIRU
Length = 616
Score = 58.5 bits (140), Expect = 4e-07
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Frame = +3
Query: 54 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 227
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 228 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 395
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 396 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLP 569
I YT ++S + GY PT+ P +P ++ K +++ L +L T N +LP
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDKT-DKLERL--WLWTLENLFEAPIILP 383
Query: 570 DG 575
DG
Sbjct: 384 DG 385
[20][TOP]
>UniRef100_A3R744 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=A3R744_9VIRU
Length = 616
Score = 58.5 bits (140), Expect = 4e-07
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Frame = +3
Query: 54 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 227
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 228 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 395
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 396 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLP 569
I YT ++S + GY PT+ P +P ++ K +++ L +L T N +LP
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDKT-DKLERL--WLWTLENLFEAPIILP 383
Query: 570 DG 575
DG
Sbjct: 384 DG 385
[21][TOP]
>UniRef100_A3R742 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=A3R742_9VIRU
Length = 616
Score = 58.5 bits (140), Expect = 4e-07
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Frame = +3
Query: 54 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 227
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 228 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 395
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 396 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLP 569
I YT ++S + GY PT+ P +P ++ K +++ L +L T N +LP
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDKT-DKLERL--WLWTLENLFEAPIILP 383
Query: 570 DG 575
DG
Sbjct: 384 DG 385
[22][TOP]
>UniRef100_A3R739 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=A3R739_9VIRU
Length = 616
Score = 58.5 bits (140), Expect = 4e-07
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 8/182 (4%)
Frame = +3
Query: 54 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 227
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 228 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 395
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 396 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLP 569
I YT ++S + GY PT+ P +P ++ K +++ L +L T N +LP
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDKT-DKLERL--WLWTLENLFEAPIILP 383
Query: 570 DG 575
DG
Sbjct: 384 DG 385
[23][TOP]
>UniRef100_Q64FP0 RNA dependent RNA polymerase n=1 Tax=White clover cryptic virus 1
RepID=Q64FP0_WCCV1
Length = 616
Score = 57.0 bits (136), Expect = 1e-06
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Frame = +3
Query: 87 IDEANSFFNDY--PTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLT--IQAR 254
+++ FFN + P LL T+ I K++ P K+R ++ +II E M + I+
Sbjct: 218 LEQTGYFFNRFIFPMLLHTKTAIVKKNDPNKMRTIWGASKPWIIAETMFYWEYLAWIKHN 277
Query: 255 KPSCCIMYGLETIRGS------NRYIEQIARDYSTFFSLDWSSYDQRLP-RVITDIYYTD 413
+ +++G ET G + I R +F +LDWS +D+R ++ I YT
Sbjct: 278 PGATPMLWGYETFTGGWFRLNHELFCGLIQR---SFLTLDWSRFDKRAYFPLLRRILYT- 333
Query: 414 FLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLPDG 575
+++ + GY PT+ PT+P + + R++ L +L T N +LPDG
Sbjct: 334 -VKTFLTFEEGYVPTHAAPTHPQWSQENI-DRLERL--WLWTLENLFEAPIILPDG 385
[24][TOP]
>UniRef100_Q7TDZ9 RNA-dependent RNA polymerase n=1 Tax=Oyster mushroom isometric
virus II RepID=Q7TDZ9_9VIRU
Length = 610
Score = 56.6 bits (135), Expect = 1e-06
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Frame = +3
Query: 117 YPTLLFTRNHI-SKRDGPL---KVRPVYAVDDIFIIIELMLTFPLT--IQARKPSCCIMY 278
Y F R HI K+ G L KVR V+ + EL+ +PL + + +++
Sbjct: 237 YWNTAFARQHIVEKKPGILAQPKVRLVFGAPFTLLTAELIFIWPLQTHLLLMQDFSPMLW 296
Query: 279 GLETIRGS-NRYIEQIARDYST---FFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHG 446
G ETI G R ++ T +LDWS +D+ + +T +R +G
Sbjct: 297 GYETILGGWYRLRGHLSGKIDTDKLVATLDWSGFDRYARHTVIKDIHTKVMRPCFDFTNG 356
Query: 447 YQPTYEYP--TYPDLDEHKLYHRMDNLLHFLHTWYNNMTFLLPDG 575
Y PT+ YP T D DE + R++NL +++ + L+PDG
Sbjct: 357 YHPTHRYPISTDVDADEQPVSTRLENLWNWMTDAVLTVPLLMPDG 401
[25][TOP]
>UniRef100_A2VA07 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Ophiostoma quercus
partitivirus RepID=A2VA07_9VIRU
Length = 132
Score = 56.2 bits (134), Expect = 2e-06
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Frame = +3
Query: 123 TLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLT---IQARKPSCCIMYGLETI 293
T L +R+H+ + D P K+R V+ V + +++E M + + + +++G ETI
Sbjct: 8 TYLHSRSHMVQSDKPDKIRAVFGVPKLLLMVENMFIWNIQKDYLNGPLGKSPLLWGFETI 67
Query: 294 RGS-NRYIEQI-ARDYSTFFSLDWSSYDQR-LPRVITDIYYTDFLRSLIVINHGYQPT 458
RG + I Q+ ++ S+ S DWS +D + L VI D++ D +S N GY+P+
Sbjct: 68 RGGWMKLISQLTSKPLSSIISADWSGFDHKALHEVIDDVH--DIWKSWFDFNQGYEPS 123
[26][TOP]
>UniRef100_B8YNW9 RNA-dependent RNA polymerase n=1 Tax=Carrot cryptic virus
RepID=B8YNW9_9VIRU
Length = 616
Score = 53.9 bits (128), Expect = 9e-06
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 11/164 (6%)
Frame = +3
Query: 117 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLT--IQARKPSCCIMYGLET 290
+P LL T+ I K + P K+R ++ +II E ML + I+ + +++G ET
Sbjct: 230 FPMLLHTKTAIVKHNDPNKMRTIWGASKPWIIAETMLYWEYIAWIKLNPGTTPMLWGYET 289
Query: 291 IRGS------NRYIEQIARDYSTFFSLDWSSYDQRLP-RVITDIYYTDFLRSLIVINHGY 449
G Y I +F +LDWS +D+R ++ I Y +RS + + GY
Sbjct: 290 FTGGWFRLNHQLYCGMIKH---SFLTLDWSRFDKRAYFPLLRRILYP--VRSFLTFDEGY 344
Query: 450 QPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYN--NMTFLLPDG 575
PT+ P +P + K R++ L +L T N +LPDG
Sbjct: 345 VPTHAAPYHPQWNHEKAL-RLERL--WLWTLENLFEAPIILPDG 385