[UP]
[1][TOP]
>UniRef100_UPI0000163D16 coat protein n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI0000163D16
Length = 514
Score = 202 bits (514), Expect = 1e-50
Identities = 97/186 (52%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
R+ +WG T T+ Q QMPH D L+IQSPFY+TANFG GA+FWV P+SSPMAP
Sbjct: 255 RVALWGDTITLEQLSQMPHVDCDVDVVSSLKIQSPFYATANFGDSGARFWVTPMSSPMAP 314
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEG--TDKEFQMFVPSRVSNL 353
E +ESK E+YI+I GID+ P +C+QINY QRF WF +++P K ++ +PSRV N+
Sbjct: 315 ETMESKLEYYIQILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSKILKLTLPSRVCNI 374
Query: 354 VIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV 533
K TN+VNAFAIMCATTGMH GKCI+HF+W ++G++SF +GMG +
Sbjct: 375 AYKEATVTNYVNAFAIMCATTGMHAGKCILHFSWTLNKGTSFKDLQGHISFYSGMGDSTI 434
Query: 534 --HYGE 545
H+GE
Sbjct: 435 GEHHGE 440
[2][TOP]
>UniRef100_P13026 Coat protein n=1 Tax=Grapevine chrome mosaic virus RepID=POL2_GCMV
Length = 1324
Score = 202 bits (514), Expect = 1e-50
Identities = 97/186 (52%), Positives = 127/186 (68%), Gaps = 5/186 (2%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
R+ +WG T T+ Q QMPH D L+IQSPFY+TANFG GA+FWV P+SSPMAP
Sbjct: 1065 RVALWGDTITLEQLSQMPHVDCDVDVVSSLKIQSPFYATANFGDSGARFWVTPMSSPMAP 1124
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEG--TDKEFQMFVPSRVSNL 353
E +ESK E+YI+I GID+ P +C+QINY QRF WF +++P K ++ +PSRV N+
Sbjct: 1125 ETMESKLEYYIQILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSKILKLTLPSRVCNI 1184
Query: 354 VIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV 533
K TN+VNAFAIMCATTGMH GKCI+HF+W ++G++SF +GMG +
Sbjct: 1185 AYKEATVTNYVNAFAIMCATTGMHAGKCILHFSWTLNKGTSFKDLQGHISFYSGMGDSTI 1244
Query: 534 --HYGE 545
H+GE
Sbjct: 1245 GEHHGE 1250
[3][TOP]
>UniRef100_UPI0000163DFE capsid protein n=1 Tax=Beet ringspot virus RepID=UPI0000163DFE
Length = 520
Score = 195 bits (496), Expect = 2e-48
Identities = 94/193 (48%), Positives = 124/193 (64%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
RI +WGT P Q QMPH D+ L+IQSPF+STANFG+ G+ F+V L +PMAP
Sbjct: 254 RIALWGTVPETDQLAQMPHVDVEVNVDASLQIQSPFFSTANFGNSGSAFYVSTLCAPMAP 313
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDK--EFQMFVPSRVSNLV 356
E VE+ E+YI+I GI++ P LC++INYKQRF W +++ K ++ +PSR+ NL
Sbjct: 314 ETVETGSEYYIQIKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKVKIPSRIGNLS 373
Query: 357 IKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVH 536
K V TNFVNA AI+CATTGMH G C +HF+W W H E K G L F GMG + H
Sbjct: 374 SKHVKVTNFVNALAILCATTGMHHGNCTIHFSWLW-HPAELGKQLGRLKFVQGMGINNEH 432
Query: 537 YGETRVFSIYDNS 575
G+T ++ N+
Sbjct: 433 IGDTMCYNSLSNT 445
[4][TOP]
>UniRef100_P14547 Coat protein n=1 Tax=Beet ringspot virus RepID=POL2_BRSV
Length = 1357
Score = 195 bits (496), Expect = 2e-48
Identities = 94/193 (48%), Positives = 124/193 (64%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
RI +WGT P Q QMPH D+ L+IQSPF+STANFG+ G+ F+V L +PMAP
Sbjct: 1091 RIALWGTVPETDQLAQMPHVDVEVNVDASLQIQSPFFSTANFGNSGSAFYVSTLCAPMAP 1150
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDK--EFQMFVPSRVSNLV 356
E VE+ E+YI+I GI++ P LC++INYKQRF W +++ K ++ +PSR+ NL
Sbjct: 1151 ETVETGSEYYIQIKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKVKIPSRIGNLS 1210
Query: 357 IKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVH 536
K V TNFVNA AI+CATTGMH G C +HF+W W H E K G L F GMG + H
Sbjct: 1211 SKHVKVTNFVNALAILCATTGMHHGNCTIHFSWLW-HPAELGKQLGRLKFVQGMGINNEH 1269
Query: 537 YGETRVFSIYDNS 575
G+T ++ N+
Sbjct: 1270 IGDTMCYNSLSNT 1282
[5][TOP]
>UniRef100_Q64959 ORF protein (Fragment) n=1 Tax=Artichoke italian latent virus
RepID=Q64959_9SECO
Length = 510
Score = 189 bits (481), Expect = 1e-46
Identities = 84/137 (61%), Positives = 103/137 (75%), Gaps = 1/137 (0%)
Frame = +3
Query: 96 IQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQR 275
IQ+ +TANFG GA+FW++PLS+P AP+ VE+KFEFYIRI GID PDLC+QINYKQR
Sbjct: 284 IQAACCATANFGDSGARFWIMPLSAPRAPQTVETKFEFYIRILGIDVIPDLCRQINYKQR 343
Query: 276 FGWFMVKP-EGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFT 452
FGWFM+ P + T E +PSR+ N+ +K C NF NAFAIMCATTGMHWG+CI+HFT
Sbjct: 344 FGWFMISPSDKTTTELDFKIPSRIGNIGVKNTKCVNFTNAFAIMCATTGMHWGRCILHFT 403
Query: 453 WAWKHNIEASKMKGNLS 503
W+W N EA K +S
Sbjct: 404 WSWHRNTEAGKNAREIS 420
[6][TOP]
>UniRef100_Q88483 P2 protein n=1 Tax=Tomato black ring virus RepID=Q88483_9SECO
Length = 1344
Score = 185 bits (469), Expect = 2e-45
Identities = 85/184 (46%), Positives = 122/184 (66%), Gaps = 4/184 (2%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
R+ +WGT PT + Q+PH D+ L+IQSPF++TANFG +G F++ L +P+AP
Sbjct: 1087 RVALWGTIPTTEELAQIPHVDVTLDAKATLQIQSPFFATANFGDDGTAFYIATLCAPLAP 1146
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSRVSNLV 356
E +E+ F++YI IHGI+++ LC++INY Q F WFM++ T + +P+R++NL
Sbjct: 1147 ETMETGFQYYIHIHGINAKAHLCREINYNQHFAWFMLEHLDTNTTGAVSLKIPARMANLT 1206
Query: 357 IKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV- 533
K V TNFVNA AIMCATTGMH+GKC +HF+W W + + + G +S TGMG V
Sbjct: 1207 SKEVQVTNFVNALAIMCATTGMHFGKCTLHFSWGW-YRGKLADQSGAVSLQTGMGRAAVA 1265
Query: 534 -HYG 542
H+G
Sbjct: 1266 EHFG 1269
[7][TOP]
>UniRef100_UPI000016782B coat protein n=1 Tax=Tomato black ring virus RepID=UPI000016782B
Length = 511
Score = 182 bits (462), Expect = 2e-44
Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
RI +WGT PT + Q+PH D+ L+IQSPF++TANFG +G F++ L +P+AP
Sbjct: 254 RIALWGTVPTTDELAQIPHVDVTLDTKATLQIQSPFFATANFGDDGTAFYISTLCAPLAP 313
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSRVSNLV 356
E +E+ F++YI IHGI + +LC++INY Q F WFM++ T + +P+R++NL
Sbjct: 314 ETMETGFQYYIHIHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVSLKIPARMANLT 373
Query: 357 IKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV- 533
K V TNFVNA AIMCATTGMH+GKC +HF+W W + + G S TGMG V
Sbjct: 374 SKEVQITNFVNALAIMCATTGMHFGKCTLHFSWNWFRG-KLADQSGVFSIQTGMGKSTVA 432
Query: 534 -HYGETRVFS 560
H+G F+
Sbjct: 433 EHFGGRHSFN 442
[8][TOP]
>UniRef100_Q8B8X2 Polyprotein n=1 Tax=Tomato black ring virus RepID=Q8B8X2_9SECO
Length = 1343
Score = 182 bits (462), Expect = 2e-44
Identities = 87/190 (45%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
RI +WGT PT + Q+PH D+ L+IQSPF++TANFG +G F++ L +P+AP
Sbjct: 1086 RIALWGTVPTTDELAQIPHVDVTLDTKATLQIQSPFFATANFGDDGTAFYISTLCAPLAP 1145
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSRVSNLV 356
E +E+ F++YI IHGI + +LC++INY Q F WFM++ T + +P+R++NL
Sbjct: 1146 ETMETGFQYYIHIHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVSLKIPARMANLT 1205
Query: 357 IKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV- 533
K V TNFVNA AIMCATTGMH+GKC +HF+W W + + G S TGMG V
Sbjct: 1206 SKEVQITNFVNALAIMCATTGMHFGKCTLHFSWNWFRG-KLADQSGVFSIQTGMGKSTVA 1264
Query: 534 -HYGETRVFS 560
H+G F+
Sbjct: 1265 EHFGGRHSFN 1274
[9][TOP]
>UniRef100_Q6XPY1 Viral coat protein (Fragment) n=1 Tax=Grapevine Anatolian ringspot
virus RepID=Q6XPY1_9SECO
Length = 330
Score = 168 bits (426), Expect = 2e-40
Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
R+ +WG T+ Q QMPH D+ G + L+IQSPFY+TAN G A FWV P+SSPMAP
Sbjct: 79 RVALWGAQITMIQLCQMPHVDVDVGVTASLKIQSPFYATANLGDSDAAFWVTPMSSPMAP 138
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEGTDKEFQMFVPSRVSNLVI 359
E +ES E+YI+I GI++ LC+ INYKQ FGWF +V+ T+KE + +PSR++N+
Sbjct: 139 EAIESALEYYIQILGIEADTPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSRIANIEY 198
Query: 360 KGVDCTNFVNAFAIMCATTGMHWGK-CIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVH 536
K + N VNAF+IMCATTGM WG +H H +A K S G+ T+ H
Sbjct: 199 KEAEVINHVNAFSIMCATTGMQWGSPFALHLD---SHMTQADDQKICESHSAGITTE--H 253
Query: 537 YGETRVFSIYDNS 575
G+ ++ + S
Sbjct: 254 IGDIKMCGVLATS 266
[10][TOP]
>UniRef100_Q6JX06 P2 protein n=1 Tax=Grapevine Anatolian ringspot virus
RepID=Q6JX06_9SECO
Length = 1350
Score = 168 bits (426), Expect = 2e-40
Identities = 87/193 (45%), Positives = 119/193 (61%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
R+ +WG T+ Q QMPH D+ G + L+IQSPFY+TAN G A FWV P+SSPMAP
Sbjct: 1099 RVALWGAQITMIQLCQMPHVDVDVGVTASLKIQSPFYATANLGDSDAAFWVTPMSSPMAP 1158
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEGTDKEFQMFVPSRVSNLVI 359
E +ES E+YI+I GI++ LC+ INYKQ FGWF +V+ T+KE + +PSR++N+
Sbjct: 1159 EAIESALEYYIQILGIEADTPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSRIANIEY 1218
Query: 360 KGVDCTNFVNAFAIMCATTGMHWGK-CIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVH 536
K + N VNAF+IMCATTGM WG +H H +A K S G+ T+ H
Sbjct: 1219 KEAEVINHVNAFSIMCATTGMQWGSPFALHLD---SHMTQADDQKICESHSAGITTE--H 1273
Query: 537 YGETRVFSIYDNS 575
G+ ++ + S
Sbjct: 1274 IGDIKMCGVLATS 1286
[11][TOP]
>UniRef100_UPI0000164A26 capsid protein n=1 Tax=Cycas necrotic stunt virus
RepID=UPI0000164A26
Length = 564
Score = 107 bits (268), Expect = 5e-22
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
RI +W I H D G + +L I+ FY+++ +G GA V L SPM+P
Sbjct: 254 RISMWSKEQHIQHQAVNVHVDTDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSP 313
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIK 362
+++ F+ +I G +C+ IN+ QRFGWF V+P + ++ + ++L +
Sbjct: 314 NAIKAPFDMIFKIRGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESE 373
Query: 363 GVDCTNFVNAFAIMCATTGMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGTKDVHY 539
+ T + NAF MC T+ MH+G I+HF+W + A+ G ++ G G ++ ++
Sbjct: 374 DMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENF 433
Query: 540 -GETRVFSIYD 569
G R SIY+
Sbjct: 434 RGHCRNLSIYE 444
[12][TOP]
>UniRef100_Q1T7B1 Coat protein (Fragment) n=1 Tax=Cycas necrotic stunt virus
RepID=Q1T7B1_CNSV
Length = 569
Score = 107 bits (268), Expect = 5e-22
Identities = 56/190 (29%), Positives = 98/190 (51%), Gaps = 2/190 (1%)
Frame = +3
Query: 6 IIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPE 185
I +W + H D G + +L I+ FY+++ +G GA + L SPM+P
Sbjct: 267 ISMWSKEQHVQHQAMNVHVDTDTGVAFDLPIKDAFYASSVYGDSGAVIQITCLCSPMSPN 326
Query: 186 KVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKG 365
+++ F+ +I G +C+ IN+ QRFGWF V+P + ++ + ++L +
Sbjct: 327 AIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESED 386
Query: 366 VDCTNFVNAFAIMCATTGMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGTKDVHY- 539
+ T + NAF MC T+ MH+G I+HF+W + A+ G ++ G G ++ ++
Sbjct: 387 MKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFR 446
Query: 540 GETRVFSIYD 569
G R FSIY+
Sbjct: 447 GHCRNFSIYE 456
[13][TOP]
>UniRef100_Q8QVU9 Coat protein n=1 Tax=Cycas necrotic stunt virus RepID=POL2_CNSV
Length = 1240
Score = 107 bits (268), Expect = 5e-22
Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 2/191 (1%)
Frame = +3
Query: 3 RIIIWGTTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAP 182
RI +W I H D G + +L I+ FY+++ +G GA V L SPM+P
Sbjct: 937 RISMWSKEQHIQHQAVNVHVDTDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSP 996
Query: 183 EKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIK 362
+++ F+ +I G +C+ IN+ QRFGWF V+P + ++ + ++L +
Sbjct: 997 NAIKAPFDMIFKIRGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESE 1056
Query: 363 GVDCTNFVNAFAIMCATTGMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGTKDVHY 539
+ T + NAF MC T+ MH+G I+HF+W + A+ G ++ G G ++ ++
Sbjct: 1057 DMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENF 1116
Query: 540 -GETRVFSIYD 569
G R SIY+
Sbjct: 1117 RGHCRNLSIYE 1127
[14][TOP]
>UniRef100_Q8B5P8 Coat protein n=1 Tax=Tobacco ringspot virus RepID=Q8B5P8_TRSV
Length = 515
Score = 58.9 bits (141), Expect = 3e-07
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 5/184 (2%)
Frame = +3
Query: 27 PTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFE 206
PT+ Q PH + G E+ I++ F+S A + ++PLS P+AP+ +E
Sbjct: 273 PTLRQVLWGPHQIMHGDGQFEIAIKTRFHSAATTEEGFGRLGILPLSGPIAPDAHVGSYE 332
Query: 207 FYIRIH--GIDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDC 374
F + I+ DSQ P + F +KP+ +P + + K
Sbjct: 333 FIVHINTWRPDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATV 392
Query: 375 TNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETR 551
T N + + A TG H+G+ V +W + +A +G++S T ++ G+ R
Sbjct: 393 TLASNPLSWLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQAR 450
Query: 552 VFSI 563
++ +
Sbjct: 451 IYDL 454
[15][TOP]
>UniRef100_Q8B5P7 Coat protein n=1 Tax=Tobacco ringspot virus RepID=Q8B5P7_TRSV
Length = 515
Score = 57.4 bits (137), Expect = 8e-07
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 5/186 (2%)
Frame = +3
Query: 21 TTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESK 200
T PT+ Q PH + G E+ I++ +S A + ++PLS P+AP+
Sbjct: 271 TPPTLRQVLWGPHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGS 330
Query: 201 FEFYIRIH--GIDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGV 368
+EF + I DSQ P + F +KP+ +P + + K
Sbjct: 331 YEFIVHIDTWRPDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDA 390
Query: 369 DCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GE 545
T N + + A TG H+G+ V +W + +A +G++S T ++ G+
Sbjct: 391 TVTLASNPLSWLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQ 448
Query: 546 TRVFSI 563
R++ +
Sbjct: 449 ARIYDL 454
[16][TOP]
>UniRef100_Q88894 Capsid protein n=1 Tax=Tobacco ringspot virus RepID=CAPSD_TRSV
Length = 515
Score = 57.0 bits (136), Expect = 1e-06
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 6/185 (3%)
Frame = +3
Query: 27 PTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFE 206
PT+ Q PH + G E+ I++ +S A + ++PLS P+AP+ +E
Sbjct: 273 PTLRQVLWGPHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYE 332
Query: 207 FYIRIH--GIDSQPDLCKQINYKQRFGWFM---VKPEGTDKEFQMFVPSRVSNLVIKGVD 371
F + I+ DSQ + + + WF +KP+ +P + + K
Sbjct: 333 FIVHINTWRPDSQVH-PPMFSSSELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDAT 391
Query: 372 CTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GET 548
T N + + A TG H+G+ V +W + +A +G++S T ++ G+
Sbjct: 392 VTLASNPLSWLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQA 449
Query: 549 RVFSI 563
R++ +
Sbjct: 450 RIYDL 454
[17][TOP]
>UniRef100_UPI00003E1862 capsid protein n=1 Tax=Tobacco ringspot virus RepID=UPI00003E1862
Length = 513
Score = 55.5 bits (132), Expect = 3e-06
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 5/184 (2%)
Frame = +3
Query: 27 PTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFE 206
PT+ Q PH + G E+ I++ +S A + ++PLS P+AP+ +E
Sbjct: 271 PTLRQVLWGPHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYE 330
Query: 207 FYIRIH--GIDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDC 374
F + I DSQ P + F +KP+ +P + + K
Sbjct: 331 FIVHIDTWRPDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATV 390
Query: 375 TNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETR 551
T N + + A TG H+G+ V +W + +A +G++S T ++ G+ R
Sbjct: 391 TLASNPLSWLVAATGWHYGE--VDLCISWPRSKQAQAQEGSVSITTNYRDWGAYWQGQAR 448
Query: 552 VFSI 563
++ +
Sbjct: 449 IYDL 452
[18][TOP]
>UniRef100_Q6UR06 Coat protein n=1 Tax=Tobacco ringspot virus RepID=POL2_TRSV
Length = 1101
Score = 55.5 bits (132), Expect = 3e-06
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 5/184 (2%)
Frame = +3
Query: 27 PTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFE 206
PT+ Q PH + G E+ I++ +S A + ++PLS P+AP+ +E
Sbjct: 859 PTLRQVLWGPHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYE 918
Query: 207 FYIRIH--GIDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDC 374
F + I DSQ P + F +KP+ +P + + K
Sbjct: 919 FIVHIDTWRPDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATV 978
Query: 375 TNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETR 551
T N + + A TG H+G+ V +W + +A +G++S T ++ G+ R
Sbjct: 979 TLASNPLSWLVAATGWHYGE--VDLCISWPRSKQAQAQEGSVSITTNYRDWGAYWQGQAR 1036
Query: 552 VFSI 563
++ +
Sbjct: 1037 IYDL 1040
[19][TOP]
>UniRef100_Q5L492 Coat protein (Fragment) n=1 Tax=Tobacco ringspot virus
RepID=Q5L492_TRSV
Length = 515
Score = 54.7 bits (130), Expect = 5e-06
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 5/186 (2%)
Frame = +3
Query: 21 TTPTIAQTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESK 200
T PT+ Q PH + G E+ ++ +S++ + ++PLS P+AP+
Sbjct: 271 TPPTLRQVLWGPHQIMHGDGQFEIATKTRLHSSSTTEEGFGRLGILPLSGPIAPDAHVGS 330
Query: 201 FEFYIRIH--GIDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGV 368
+EF + I DSQ P + F +KP+ +P + + K
Sbjct: 331 YEFIVHIDTWRPDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDA 390
Query: 369 DCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GE 545
T N + + A TG H+G+ V +W + +A +G++S T ++ G+
Sbjct: 391 TVTLASNPLSWLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQ 448
Query: 546 TRVFSI 563
R++ +
Sbjct: 449 ARIYDL 454