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[1][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 318 bits (814), Expect = 2e-85
Identities = 154/191 (80%), Positives = 168/191 (87%)
Frame = +3
Query: 3 ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
ELKSQIDYIPEFGEA DG+FK GYV +APTLPKKTNMV VPESLRVPCDVP+KEPAVL
Sbjct: 1440 ELKSQIDYIPEFGEACDGYFKAGYVHKSEAPTLPKKTNMVPVPESLRVPCDVPVKEPAVL 1499
Query: 183 TKDDPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSV 362
TKDDPRCP GVDPP AAL+KKF+QPM ELE ++L++VA +ILETWYDCEDHVL+DI LSV
Sbjct: 1500 TKDDPRCPIGVDPPRAALKKKFTQPMMELEQEILDEVATDILETWYDCEDHVLSDISLSV 1559
Query: 363 AINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAE 542
AINGIPA EEAELENFVMKTSPGYPYFKNNR +KGKHAYFEE EDG+L LK G +A
Sbjct: 1560 AINGIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAA 1619
Query: 543 ELHTNLVEFTK 575
ELH NLVEFTK
Sbjct: 1620 ELHENLVEFTK 1630
[2][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 312 bits (800), Expect = 1e-83
Identities = 151/188 (80%), Positives = 165/188 (87%)
Frame = +3
Query: 12 SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
SQIDYIPEFGEA DG+FK GYV +APTLPKKTNMV VPESLRVPCDVP+KEPAVLTKD
Sbjct: 1 SQIDYIPEFGEACDGYFKAGYVHKSEAPTLPKKTNMVPVPESLRVPCDVPVKEPAVLTKD 60
Query: 192 DPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAIN 371
DPRCP GVDPP AAL+KKF+QPM ELE ++L++VA +ILETWYDCEDHVL+DI LSVAIN
Sbjct: 61 DPRCPIGVDPPRAALKKKFTQPMMELEQEILDEVATDILETWYDCEDHVLSDISLSVAIN 120
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
GIPA EEAELENFVMKTSPGYPYFKNNR +KGKHAYFEE EDG+L LK G +A ELH
Sbjct: 121 GIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAAELH 180
Query: 552 TNLVEFTK 575
NLVEFTK
Sbjct: 181 ENLVEFTK 188
[3][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 308 bits (788), Expect = 3e-82
Identities = 147/191 (76%), Positives = 163/191 (85%)
Frame = +3
Query: 3 ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
EL+SQI+YIP+FGEA+DGFFK GYVP APTLPKKTNMV VP+SLRVPCDVPIKEPAVL
Sbjct: 1438 ELQSQIEYIPKFGEAYDGFFKAGYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVL 1497
Query: 183 TKDDPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSV 362
T D RCP GV+PP+ AL+KKF PM ELE ++L++VA +ILETWYDCEDHVLNDIPL V
Sbjct: 1498 TNADKRCPAGVNPPVTALKKKFEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPLVV 1557
Query: 363 AINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAE 542
AINGIPA EEAELENFVMKTSPGYPYFKNNR +KGK AYFEE EDGTL LK G +A
Sbjct: 1558 AINGIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAA 1617
Query: 543 ELHTNLVEFTK 575
+LH NLVEFTK
Sbjct: 1618 KLHENLVEFTK 1628
[4][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 304 bits (778), Expect = 4e-81
Identities = 145/188 (77%), Positives = 160/188 (85%)
Frame = +3
Query: 12 SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
SQI+YIP+FGEA+DGFFK GYVP APTLPKKTNMV VP+SLRVPCDVPIKEPAVLT
Sbjct: 1 SQIEYIPKFGEAYDGFFKAGYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNA 60
Query: 192 DPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAIN 371
D RCP GV+PP+ AL+KKF PM ELE ++L++VA +ILETWYDCEDHVLNDIPL VAIN
Sbjct: 61 DKRCPAGVNPPVTALKKKFEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAIN 120
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
GIPA EEAELENFVMKTSPGYPYFKNNR +KGK AYFEE EDGTL LK G +A +LH
Sbjct: 121 GIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLH 180
Query: 552 TNLVEFTK 575
NLVEFTK
Sbjct: 181 ENLVEFTK 188
[5][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 274 bits (700), Expect = 4e-72
Identities = 129/191 (67%), Positives = 161/191 (84%)
Frame = +3
Query: 3 ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
ELKSQI+YIPEFGEA +G+FKVG+V +APT+PKKTN V VP++LRVPCD+PIKEP+++
Sbjct: 1424 ELKSQIEYIPEFGEAEEGYFKVGHVSPKEAPTMPKKTNSVQVPQALRVPCDLPIKEPSII 1483
Query: 183 TKDDPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSV 362
+K+DPRCP VDPP AA++KKF QPM +L+ L+++A ++LETWYDCED +L+DIPL+
Sbjct: 1484 SKNDPRCPANVDPPKAAMKKKFQQPMLDLDQKCLDEIAGDMLETWYDCEDSILSDIPLAT 1543
Query: 363 AINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAE 542
AINGIPAG E+AELENFVMKTSPGYPYFK N+ LG KGKH YFEE EDG+L LK GS A
Sbjct: 1544 AINGIPAGCEDAELENFVMKTSPGYPYFK-NKGLG-KGKHPYFEECEDGSLKLKEGSQAA 1601
Query: 543 ELHTNLVEFTK 575
EL+ N+ +F K
Sbjct: 1602 ELYENMAQFAK 1612
[6][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 268 bits (686), Expect = 2e-70
Identities = 126/188 (67%), Positives = 158/188 (84%)
Frame = +3
Query: 12 SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
SQI+YIPEFGEA +G+FKVG+V +APT+PKKTN V VP++LRVPCD+PIKEP++++K+
Sbjct: 1 SQIEYIPEFGEAEEGYFKVGHVSPKEAPTMPKKTNSVQVPQALRVPCDLPIKEPSIISKN 60
Query: 192 DPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAIN 371
DPRCP VDPP AA++KKF QPM +L+ L+++A ++LETWYDCED +L+DIPL+ AIN
Sbjct: 61 DPRCPANVDPPKAAMKKKFQQPMLDLDQKCLDEIAGDMLETWYDCEDSILSDIPLATAIN 120
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
GIPAG E+AELENFVMKTSPGYPYFK N+ LG KGKH YFEE EDG+L LK GS A EL+
Sbjct: 121 GIPAGCEDAELENFVMKTSPGYPYFK-NKGLG-KGKHPYFEECEDGSLKLKEGSQAAELY 178
Query: 552 TNLVEFTK 575
N+ +F K
Sbjct: 179 ENMAQFAK 186
[7][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 182 bits (463), Expect = 1e-44
Identities = 95/202 (47%), Positives = 133/202 (65%), Gaps = 11/202 (5%)
Frame = +3
Query: 3 ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
E+KSQI+Y + G +G+ K+GY+ + P LPKK N V+V R+ VPIKEP+++
Sbjct: 1488 EMKSQIEYEFKLGAHTEGYTKLGYLTKDKTPHLPKKNNAVLVKPEYRIDSPVPIKEPSII 1547
Query: 183 TKDDPRCPPG-----VDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLND 347
+ +DPRCP +DP + A KKF+ PMD LE+D+LE +A E+++ W DCE L D
Sbjct: 1548 SAEDPRCPKDAEGKPIDPIVKAFEKKFTTPMDLLEDDILESIAQEMVDEWQDCESEPLCD 1607
Query: 348 IPLSVAINGIPAG--GEEAELENFV----MKTSPGYPYFKNNRELGVKGKHAYFEELEDG 509
+PL VAINGIP ++ E E+ V M+TSPGYPY ++E G+KGK AYFE DG
Sbjct: 1608 VPLEVAINGIPGTQIDDDDEFEDAVECLKMRTSPGYPYVL-HKEPGMKGKEAYFELAPDG 1666
Query: 510 TLGLKPGSIAEELHTNLVEFTK 575
T LK GS+A EL+ N+V+++K
Sbjct: 1667 TRALKEGSLAAELYENIVQYSK 1688
[8][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 178 bits (451), Expect = 3e-43
Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 11/199 (5%)
Frame = +3
Query: 12 SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
SQI+Y + G +G+ K+GY+ + P LPKK N V+V R+ VPIKEP++++ +
Sbjct: 1 SQIEYEFKLGAHTEGYTKLGYLTKDKTPHLPKKNNAVLVKPEYRIDSPVPIKEPSIISAE 60
Query: 192 DPRCPPG-----VDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
DPRCP +DP + A KKF+ PMD LE+D+LE +A E+++ W DCE L D+PL
Sbjct: 61 DPRCPKDAEGKPIDPIVKAFEKKFTTPMDLLEDDILESIAQEMVDEWQDCESEPLCDVPL 120
Query: 357 SVAINGIPAG--GEEAELENFV----MKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLG 518
VAINGIP ++ E E+ V M+TSPGYPY ++E G+KGK AYFE DGT
Sbjct: 121 EVAINGIPGTQIDDDDEFEDAVECLKMRTSPGYPYVL-HKEPGMKGKEAYFELAPDGTRA 179
Query: 519 LKPGSIAEELHTNLVEFTK 575
LK GS+A EL+ N+V+++K
Sbjct: 180 LKEGSLAAELYENIVQYSK 198
[9][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 105 bits (263), Expect = 2e-21
Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 LKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLT 185
++ + Y+PE G +G+ KVGY+ AP +P KT + VP+ + P P K+PA+L+
Sbjct: 1458 VRGDVPYVPEDGIKTNGYRKVGYLMAKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILS 1516
Query: 186 KDDPRCPPGVD---PPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
+D R V PI KKF++PM L+ LL++VA +++ TW+D + +L D+PL
Sbjct: 1517 AEDERLIGTVHEGYTPIREGMKKFAEPMHLLDAQLLDEVAGDMVHTWFDAGE-ILEDVPL 1575
Query: 357 SVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSI 536
S+AING EE + M TS GYP R+ G KGK +F E G PG
Sbjct: 1576 SIAING---DVEEEYFDPIAMDTSEGYPEVL-QRKNGEKGKARFFVG-EPGAREFVPGCG 1630
Query: 537 AEELHTNLVEFTK 575
E + +L E K
Sbjct: 1631 PERAYLSLEEECK 1643
[10][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 104 bits (260), Expect = 4e-21
Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
Frame = +3
Query: 18 IDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDP 197
+ Y+PE G +G+ KVGY+ AP +P KT + VP+ + P P K+PA+L+ +D
Sbjct: 3 VPYVPEDGIKTNGYRKVGYLMAKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSAEDE 61
Query: 198 RCPPGVD---PPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAI 368
R V PI KKF++PM L+ LL++VA +++ TW+D + +L D+PLS+AI
Sbjct: 62 RLIGTVHEGYTPIREGMKKFAEPMHLLDAQLLDEVAGDMVHTWFDAGE-ILEDVPLSIAI 120
Query: 369 NGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
NG EE + M TS GYP R+ G KGK +F E G PG E
Sbjct: 121 NG---DVEEEYFDPIAMDTSEGYPEVL-QRKNGEKGKARFFVG-EPGAREFVPGCGPERA 175
Query: 549 HTNLVEFTK 575
+ +L E K
Sbjct: 176 YLSLEEECK 184
[11][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 103 bits (257), Expect = 9e-21
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 LKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLT 185
++ + Y+PE G +G+ KVGY+ AP +P KT + VP+ + P P K+PA+L+
Sbjct: 1460 VRGDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILS 1518
Query: 186 KDDPRCPPGVD---PPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
+D R V PI KKF++PM L+ LL++VA ++++TW+D + L D+PL
Sbjct: 1519 AEDDRLKGTVHEGYTPIRDGMKKFAEPMHLLDEKLLDEVAGDMVQTWFDVGE-FLEDVPL 1577
Query: 357 SVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSI 536
+ AING +E + M TS GYP R+ G KGK +F E G PG
Sbjct: 1578 NTAING---DVDEEYFDPMAMDTSEGYPEVL-QRKAGEKGKARFFVG-EPGAREFVPGCG 1632
Query: 537 AEELHTNLVEFTK 575
E + +L E K
Sbjct: 1633 PERAYLSLEEECK 1645
[12][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 102 bits (255), Expect = 2e-20
Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 3/193 (1%)
Frame = +3
Query: 6 LKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLT 185
++ ++ Y+PE G G+ KVGY+ AP +P KT+ + VP+ L P P K+PA+L+
Sbjct: 1459 IRGEVPYVPEDGLVSRGYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDP-KQPAILS 1517
Query: 186 KDDPRCPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
+D R + LR KKF++PM LE LL++VA ++++TWYD L DI L
Sbjct: 1518 AEDERLKGTIHEGYTPLRDGMKKFAEPMYLLEEKLLDEVAGDMVQTWYD-PGEFLEDISL 1576
Query: 357 SVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSI 536
AING +E + VM TS GYP +R+ G KGK +F E G G
Sbjct: 1577 DQAING---DMDEEYFDPLVMDTSEGYPDVL-DRKPGEKGKARFFVG-EPGNRAFVAGCN 1631
Query: 537 AEELHTNLVEFTK 575
E+ + L E +K
Sbjct: 1632 PEKAYYQLEEDSK 1644
[13][TOP]
>UniRef100_UPI0000164A2C RNA-dependent RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=UPI0000164A2C
Length = 335
Score = 101 bits (251), Expect = 5e-20
Identities = 71/190 (37%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
Frame = +3
Query: 15 QIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDD 194
++ Y+PE G G+ KVGY+ AP +P KT+ + VP+ L P P K+PA+L+ +D
Sbjct: 2 EVPYVPEDGLVSRGYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDP-KQPAILSAED 60
Query: 195 PRCPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVA 365
R + LR KKF++PM LE LL++VA ++++TWYD L DI L A
Sbjct: 61 ERLKGTIHEGYTPLRDGMKKFAEPMYLLEEKLLDEVAGDMVQTWYD-PGEFLEDISLDQA 119
Query: 366 INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEE 545
ING +E + VM TS GYP +R+ G KGK +F E G G E+
Sbjct: 120 ING---DMDEEYFDPLVMDTSEGYPDVL-DRKPGEKGKARFFVG-EPGNRAFVAGCNPEK 174
Query: 546 LHTNLVEFTK 575
+ L E +K
Sbjct: 175 AYYQLEEDSK 184
[14][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 100 bits (248), Expect = 1e-19
Identities = 69/183 (37%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
Frame = +3
Query: 18 IDYIPEFGEAHD--------------GFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPC 152
I Y+P F E H G K+G+V + V+ P KT V VPE +++P
Sbjct: 1189 IPYVPHF-ECHSRMPALEERVGIDTLGCTKIGFVSNPVERPYYATKTQFVEVPEMVKIPY 1247
Query: 153 DVPIKEPAVLTKDDPRCPPGVD----PPIAALRKKFSQPMDELENDLLEQVADEILETWY 320
+K P++L K D R G + P+ K+ +PM ++ LL +VA EI+ETW+
Sbjct: 1248 H-DVKIPSILAKGDARLR-GTEHEAYDPLKNGMSKYEEPMSLVDEKLLREVAQEIVETWH 1305
Query: 321 DCEDHVLNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEEL 500
DCED D V INGI E + VM TS GYPY K R +G KGK YFE
Sbjct: 1306 DCEDGTFGDADDDVVINGIDG---EDFFDALVMSTSEGYPYIK-ERNIGEKGKARYFEPT 1361
Query: 501 EDG 509
DG
Sbjct: 1362 GDG 1364
[15][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 96.7 bits (239), Expect = 1e-18
Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 16/194 (8%)
Frame = +3
Query: 18 IDYIPE-FGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDD 194
+ Y+PE + EA G K+G+ + P +P+KT V V E L +P D P K P+VL DD
Sbjct: 1486 LSYVPEEWEEAPRGLKKLGWNDRSELPHMPRKTQYVAVNEDLAIPFDNP-KIPSVLVSDD 1544
Query: 195 PRC----PPGVDPPIAALRKKFSQPMDEL----------ENDLLEQVADEILETWYDCED 332
PR G DP + A+ +KF +PM + E L EQV D+I++TW+D
Sbjct: 1545 PRTVGTPVEGKDPVLVAM-EKFYEPMTDFTEEEVRPGQTEVSLFEQVCDDIVQTWFDAGA 1603
Query: 333 HVLNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGT 512
D+ V ING + + + +M TS GYPY R G KGK YFE G
Sbjct: 1604 E-FEDVEDDVVING------DDDFDKLIMDTSEGYPYVL-ERTHGEKGKTRYFEG-GPGA 1654
Query: 513 LGLKPG-SIAEELH 551
LKPG S+ + H
Sbjct: 1655 YTLKPGTSVYNDYH 1668
[16][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 95.1 bits (235), Expect = 3e-18
Identities = 68/192 (35%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Frame = +3
Query: 6 LKSQIDYIPEFGEAHDGFFKVGYVPHVQA-PTLPKKTNMVVVPESLR------------- 143
L S + Y P G +G+ ++G + ++ A P KT V VP+ L
Sbjct: 1368 LNSMLQYTPYDGICKEGYRQIGNIENIGARPYTSGKTAFVAVPQHLLYSPPVLQEKLPGS 1427
Query: 144 ---VPCDVPIKEPAVLTKDDPRCPPGV--DPPIAALRKKFSQPMDELENDLLEQVADEIL 308
V V +K+PA+L+KDDPR P G DP I + K FS PM L+ ++ +VA +I+
Sbjct: 1428 AQPVTIQVEVKQPAILSKDDPRIPEGTSYDPLIDGMAK-FSHPMAVLDENVCNEVAQDIV 1486
Query: 309 ETWYDCEDHVLNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAY 488
E+W+DC L D+ +AIN G E + E F +++S GYPY R+ G GK +
Sbjct: 1487 ESWHDCFQD-LQDVSDEIAIN----GSTEMDYEPFNLQSSEGYPYV-TQRKPGESGKIRF 1540
Query: 489 FEELEDGTLGLK 524
FE D GLK
Sbjct: 1541 FE--MDPYTGLK 1550
[17][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 91.7 bits (226), Expect = 4e-17
Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
I E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 282 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+LE V ++ + +YDC+ L + ING
Sbjct: 342 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLENVMADMYDEFYDCQT-TLRIMSDDEVING 399
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
G ++E V TS GYP+ + R G KGK + EELE +KP + E
Sbjct: 400 SDFG---FKIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDIKPKYKLVVGSE 455
Query: 546 LHTNLV 563
+H+ +V
Sbjct: 456 VHSAMV 461
[18][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 90.5 bits (223), Expect = 8e-17
Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
I E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 282 IQEAGVEERGVSKVGHIEDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+LE V ++ + +YDC+ L + ING
Sbjct: 342 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLENVMADMYDEFYDCQT-TLRIMSDDRVING 399
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
G +E V TS GYP+ + R G KGK + EELE +KP + E
Sbjct: 400 SDFG---FNIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDIKPKYKLVVGTE 455
Query: 546 LHTNLV 563
+H+ +V
Sbjct: 456 VHSAMV 461
[19][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 90.1 bits (222), Expect = 1e-16
Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
I E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 282 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+LE V ++ + +YDC+ L + ING
Sbjct: 342 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQT-TLRIMSDDEVING 399
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
G ++E V TS GYP+ + R G KGK + EELE KP + E
Sbjct: 400 SDFG---FKIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDTKPKYKLVVGTE 455
Query: 546 LHTNLV 563
+H+ +V
Sbjct: 456 VHSAMV 461
[20][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 89.7 bits (221), Expect = 1e-16
Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
I E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 8 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 67
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+LE V ++ + +YDC+ L + ING
Sbjct: 68 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQT-TLRIMSDDEVING 125
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
G +E V TS GYP+ + R G KGK + EELE KP + E
Sbjct: 126 SDFG---FNIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDTKPKYKLVVGTE 181
Query: 546 LHTNLV 563
+H+ +V
Sbjct: 182 VHSAMV 187
[21][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 89.7 bits (221), Expect = 1e-16
Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
I E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 1494 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 1553
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+LE V ++ + +YDC+ L + ING
Sbjct: 1554 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQT-TLRIMSDDEVING 1611
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
G +E V TS GYP+ + R G KGK + EELE KP + E
Sbjct: 1612 SDFG---FNIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDTKPKYKLVVGTE 1667
Query: 546 LHTNLV 563
+H+ +V
Sbjct: 1668 VHSAMV 1673
[22][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 87.0 bits (214), Expect = 9e-16
Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
+ E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 8 VQEAGIEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 67
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+LE V ++ + +YDC+ L + ING
Sbjct: 68 PEAYKGYD-PLGDAMEKFYEPMLDLDGDVLECVMADMYDEFYDCQT-TLRIMSDDEVING 125
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKP 527
G +E V TS GYP F +R G KGK + EELE KP
Sbjct: 126 SDFG---FNIEAVVKGTSEGYP-FVLSRRAGEKGKARFLEELEPQPGDTKP 172
[23][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 86.3 bits (212), Expect = 2e-15
Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Frame = +3
Query: 27 IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
+ E G G KVG++ + P + KT + +V E+ VP V +K P++L+KDDPR
Sbjct: 282 VREAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341
Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
P G D P+ +KF +PM +L+ D+L V +++ + +YDC+ L + ING
Sbjct: 342 PETYKGYD-PLGDAMEKFYEPMLDLDEDVLNCVMEDMHDVFYDCQPS-LRLMSDDEVING 399
Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKP 527
G +E ++S GYP+ + R G KGK Y EELE KP
Sbjct: 400 SDFG---FNIEGCCQRSSEGYPFVLSRRP-GEKGKARYLEELEPSPGDAKP 446
[24][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 84.0 bits (206), Expect = 8e-15
Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
Frame = +3
Query: 66 VGYVPHVQA-PTLPKKTNMVVVPESLR----------------VPCDVPIKEPAVLTKDD 194
+G + ++ A P KT V VP+ L V V +K+PA+L+KDD
Sbjct: 1 IGNIENIGARPYTSGKTAFVAVPQHLLYSPPVLQEKLPGSAQPVTIQVEVKQPAILSKDD 60
Query: 195 PRCPPGV--DPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAI 368
PR P G DP I + K FS PM L+ ++ +VA +I+E+W+DC L D+ +AI
Sbjct: 61 PRIPEGTSYDPLIDGMAK-FSHPMAVLDENVCNEVAQDIVESWHDCFQD-LQDVSDEIAI 118
Query: 369 NGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLK 524
N G E + E F +++S GYPY R+ G GK +FE D GLK
Sbjct: 119 N----GSTEMDYEPFNLQSSEGYPYV-TQRKPGESGKIRFFE--MDPYTGLK 163
[25][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 84.0 bits (206), Expect = 8e-15
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKD 191
++ P +A +G +VG + P + P LPKKT++V PE L PCD K P++L K
Sbjct: 7 NFYPIEYDAAEGIARVGELKPKLYIP-LPKKTSLVKTPEEWHLGTPCD---KVPSILVKG 62
Query: 192 DPRCPPGV----DPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIP 353
DPR V DP ++ L K +S PM L++ LL + EIL+ W+DC E L ++
Sbjct: 63 DPRLADTVHADYDPCLSGLTK-YSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEVT 121
Query: 354 LSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGS 533
++ A+NG+ ++ + TS G+P+ +RE G KGK F + + + L PG+
Sbjct: 122 INEALNGVDG---VDYMDRIPLATSEGFPHVM-SREQGEKGKQR-FVQGDGHIVSLIPGT 176
Query: 534 IAEELHTNL 560
E + L
Sbjct: 177 SVHEAYETL 185
[26][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 84.0 bits (206), Expect = 8e-15
Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKD 191
++ P +A +G +VG + P + P LPKKT++V PE L PCD K P++L K
Sbjct: 1158 NFYPIEYDAAEGIARVGELKPKLYIP-LPKKTSLVKTPEEWHLGTPCD---KVPSILVKG 1213
Query: 192 DPRCPPGV----DPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIP 353
DPR V DP ++ L K +S PM L++ LL + EIL+ W+DC E L ++
Sbjct: 1214 DPRLADTVHADYDPCLSGLTK-YSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEVT 1272
Query: 354 LSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGS 533
++ A+NG+ ++ + TS G+P+ +RE G KGK F + + + L PG+
Sbjct: 1273 INEALNGVDG---VDYMDRIPLATSEGFPHVM-SREQGEKGKQR-FVQGDGHIVSLIPGT 1327
Query: 534 IAEELHTNL 560
E + L
Sbjct: 1328 SVHEAYETL 1336
[27][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 83.6 bits (205), Expect = 1e-14
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
Frame = +3
Query: 39 GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
G AH G K G YVP LP KTN+V P+ L +PCD K P+VLT D R
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208
Query: 207 ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
G DP + ++K ++ PM L+ ++L +VA +++E W+DC E+ ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALN 1267
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
G+ +E + TS G+P+ +R+ G KGK F + + L PG+ EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAY 1322
Query: 552 TNL-VEFTK 575
L VE K
Sbjct: 1323 NKLTVELEK 1331
[28][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 83.6 bits (205), Expect = 1e-14
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
Frame = +3
Query: 39 GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
G AH G K G YVP LP KTN+V P+ L +PCD K P+VLT D R
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208
Query: 207 ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
G DP + ++K ++ PM L+ ++L +VA +++E W+DC E+ ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALN 1267
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
G+ +E + TS G+P+ +R+ G KGK F + + L PG+ EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAY 1322
Query: 552 TNL-VEFTK 575
L VE K
Sbjct: 1323 NKLTVELEK 1331
[29][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 83.2 bits (204), Expect = 1e-14
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Frame = +3
Query: 39 GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
G AH G K G YVP LP KTN+V P+ L +PCD K P+VLT D R
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208
Query: 207 ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
G DP + ++K ++ PM L+ ++L +VA +++E W+DC E+ ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALN 1267
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
G+ +E + TS G+P+ +R+ G KGK F + + L PG+ EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVSGDGEEMTLIPGTSVEEAY 1322
Query: 552 TNLV 563
L+
Sbjct: 1323 NKLI 1326
[30][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 83.2 bits (204), Expect = 1e-14
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Frame = +3
Query: 39 GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
G AH G K G YVP LP KTN+V P+ L +PCD K P+VLT D R
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208
Query: 207 ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
G DP + ++K ++ PM L+ ++L +VA +++E W+DC E+ ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALN 1267
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
G+ +E + TS G+P+ +R+ G KGK F + + L PG+ EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVSGDGEEMTLIPGTSVEEAY 1322
Query: 552 TNLV 563
L+
Sbjct: 1323 NKLI 1326
[31][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 81.3 bits (199), Expect = 5e-14
Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 30/205 (14%)
Frame = +3
Query: 3 ELKSQIDY-IPEFGEAHDGFFKVGYVP-----HVQAPTLPKKTNMVVVPESLRVPC---- 152
++ SQ D+ IPE G+ G+ K+G++ H+ P LP +++ + L++
Sbjct: 1409 DVHSQGDFFIPEVGDREAGYEKIGFIDNSAKAHILVP-LPNWAGYLLILKPLQLLMRRRK 1467
Query: 153 --------DVPIKEPAVLTKDDPRCP-PGVDPPIAALRKKFSQPMDELENDLLEQVADEI 305
IKEPA+L+K DPR P P+ KF+ PM L+ LLE V ++I
Sbjct: 1468 ENFVDAGETFEIKEPAILSKKDPRLEDPDSFDPLRTGMSKFANPMSVLDEALLEAVCEDI 1527
Query: 306 LETWYDCEDHV-----------LNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKN 452
TWYD V L L +A+NG+P +A LE + TS GYP+
Sbjct: 1528 FTTWYDALPAVTDNQGNVSRILLEKTSLDIALNGVPG---DAYLEPMKLDTSEGYPHCV- 1583
Query: 453 NRELGVKGKHAYFEELEDGTLGLKP 527
R G GK + E +D LKP
Sbjct: 1584 RRGPGESGKRRFVEIDDDFHFSLKP 1608
[32][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 80.1 bits (196), Expect = 1e-13
Identities = 67/184 (36%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRV--PCDVPIKEPAVLTKDD 194
DY+ DG ++ + +P KT++V P + + PCD K P++L+ D
Sbjct: 1152 DYLAFEEREGDGIARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCD---KYPSILSNTD 1208
Query: 195 PRCP-PGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLS 359
PR GV P A K+ PM EL+ DLL++V DEI ETW DC++ ++ L
Sbjct: 1209 PRLEVSGVTDYDPFKAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLE 1268
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSI 536
AINGI G E +E M TS G+P+ R G KGK + E + ED TL L S+
Sbjct: 1269 EAINGIK--GME-YMERIPMATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSV 1323
Query: 537 AEEL 548
E L
Sbjct: 1324 TEAL 1327
[33][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 80.1 bits (196), Expect = 1e-13
Identities = 67/184 (36%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRV--PCDVPIKEPAVLTKDD 194
DY+ DG ++ + +P KT++V P + + PCD K P++L+ D
Sbjct: 1155 DYLAFEEREGDGIARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCD---KYPSILSNTD 1211
Query: 195 PRCP-PGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLS 359
PR GV P A K+ PM EL+ DLL++V DEI ETW DC++ ++ L
Sbjct: 1212 PRLEVSGVTDYDPFKAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLE 1271
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSI 536
AINGI G E +E M TS G+P+ R G KGK + E + ED TL L S+
Sbjct: 1272 EAINGIK--GME-YMERIPMATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSV 1326
Query: 537 AEEL 548
E L
Sbjct: 1327 TEAL 1330
[34][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 80.1 bits (196), Expect = 1e-13
Identities = 67/184 (36%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRV--PCDVPIKEPAVLTKDD 194
DY+ DG ++ + +P KT++V P + + PCD K P++L+ D
Sbjct: 7 DYLAFEEREGDGIARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCD---KYPSILSNTD 63
Query: 195 PRCP-PGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLS 359
PR GV P A K+ PM EL+ DLL++V DEI ETW DC++ ++ L
Sbjct: 64 PRLEVSGVTDYDPFKAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLE 123
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSI 536
AINGI G E +E M TS G+P+ R G KGK + E + ED TL L S+
Sbjct: 124 EAINGIK--GME-YMERIPMATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSV 178
Query: 537 AEEL 548
E L
Sbjct: 179 TEAL 182
[35][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 80.1 bits (196), Expect = 1e-13
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Frame = +3
Query: 9 KSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVL 182
+ + P E + G VG + + P KT+ PES L +PC+ KEP++L
Sbjct: 29 QEHFEIFPYEQETNAGLALVGELKQGVYVSCPTKTSFERTPESYHLGLPCE---KEPSIL 85
Query: 183 TKDDPRCPPGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDC-EDHVLNDIP 353
+ DPR P V+ P A +K++ PM L++DL+ +VA ++ E+W+DC +D ++
Sbjct: 86 SSHDPRIPEHVEGYCPFRAGIQKYANPMGHLDHDLMYEVAHDMQESWHDCVQDFTFPEVD 145
Query: 354 LSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE------ELEDGTL 515
L AINGI +E TS G+P+ +R G KGK + E L +GT
Sbjct: 146 LETAINGIDM---VEYMECIPKSTSEGFPHVL-SRAPGEKGKMRFLEGDGEKFSLREGTS 201
Query: 516 GLKPGSIAEE 545
K + +E
Sbjct: 202 VKKAYDLLQE 211
[36][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 78.2 bits (191), Expect = 4e-13
Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Frame = +3
Query: 39 GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRC-- 203
G AH G K G YVP LP KTN+V P+ L +PCD K P+VLT D R
Sbjct: 18 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 68
Query: 204 PPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAINGI 377
D + K++ PM L+ ++L +VA +++E W+DC E+ ++ LS A+NG+
Sbjct: 69 TEHEDMTHSWWYSKYATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGV 128
Query: 378 PAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELHTN 557
+E + TS G+P+ +R+ G KGK F + + L PG+ EE +
Sbjct: 129 EG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAYNK 183
Query: 558 L-VEFTK 575
L VE K
Sbjct: 184 LTVELEK 190
[37][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 78.2 bits (191), Expect = 4e-13
Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
Frame = +3
Query: 39 GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRC-- 203
G AH G K G YVP LP KTN+V P+ L +PCD K P+VLT D R
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208
Query: 204 PPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAINGI 377
D + K++ PM L+ ++L +VA +++E W+DC E+ ++ LS A+NG+
Sbjct: 1209 TEHEDMTHSWWYSKYATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGV 1268
Query: 378 PAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELHTN 557
+E + TS G+P+ +R+ G KGK F + + L PG+ EE +
Sbjct: 1269 EG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAYNK 1323
Query: 558 L-VEFTK 575
L VE K
Sbjct: 1324 LTVELEK 1330
[38][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 77.8 bits (190), Expect = 6e-13
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
D++ + +G KVG + LP KTN+V P+ + + KEP++L+ D R
Sbjct: 7 DFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTE-KTKEPSILSSTDLR 65
Query: 201 CPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC---EDHVLNDIPLSVAIN 371
P +K+++PM L++++L VA +I+E W+DC ++ ++ L VAIN
Sbjct: 66 LGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEWFDCVDPQEDTFEEVDLQVAIN 125
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTL-GLKPGSIAEEL 548
G+ G E +E M TS G+P+ R+ G KGK + DG + L PG+ E
Sbjct: 126 GLE--GME-YMERVPMATSEGFPHIL-TRKSGEKGKGRFV--YGDGEIFDLIPGTSVHEA 179
Query: 549 HTNLVE 566
+ L E
Sbjct: 180 YLTLEE 185
[39][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 77.8 bits (190), Expect = 6e-13
Identities = 65/166 (39%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
Frame = +3
Query: 81 HVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPG----VDPPIAALRK 242
H+ PT KT++V P L PCD K P++L+ DPR DP A + K
Sbjct: 1178 HIPVPT---KTSLVETPVEWHLDTPCD---KYPSILSSSDPRLEVSGMTDYDPFKAGILK 1231
Query: 243 KFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLSVAINGIPAGGEEAELENFV 416
+ PM EL+ DLL++V DEI ETW DC++ ++ L AINGI G E +E
Sbjct: 1232 -YQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLEEAINGIK--GLE-YMERIP 1287
Query: 417 MKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSIAEELH 551
M TS G+P+ R G KGK + E + ED TL L S+ E L+
Sbjct: 1288 MATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSVTEALN 1331
[40][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 77.8 bits (190), Expect = 6e-13
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
D++ + +G KVG + LP KTN+V P+ + + KEP++L+ D R
Sbjct: 1153 DFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTE-KTKEPSILSSTDLR 1211
Query: 201 CPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC---EDHVLNDIPLSVAIN 371
P +K+++PM L++++L VA +I+E W+DC ++ ++ L VAIN
Sbjct: 1212 LGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEWFDCVDPQEDTFEEVDLQVAIN 1271
Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTL-GLKPGSIAEEL 548
G+ G E +E M TS G+P+ R+ G KGK + DG + L PG+ E
Sbjct: 1272 GLE--GME-YMERVPMATSEGFPHIL-TRKSGEKGKGRFV--YGDGEIFDLIPGTSVHEA 1325
Query: 549 HTNLVE 566
+ L E
Sbjct: 1326 YLTLEE 1331
[41][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 24 YIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
+ P E G VG + P V P LP KT++V E + K P++L+ +DPR
Sbjct: 8 FYPNEQEEETGVALVGQLKPEVWIP-LPTKTSLVETEEEWHLDTKSD-KVPSILSSEDPR 65
Query: 201 CPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVA 365
G + R K+SQPM L + L +VA+EILE W+DC D +D+ L VA
Sbjct: 66 IKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDENFDDVDLEVA 125
Query: 366 INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE 494
INGI ++ + TS G+P+ +RE G KGK + E
Sbjct: 126 INGIDG---LDYMDRIPLATSEGFPHIL-SREKGEKGKGRFVE 164
[42][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 75.9 bits (185), Expect = 2e-12
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 24 YIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
+ P E G VG + P V P LP KT++V E + K P++L+ +DPR
Sbjct: 1155 FYPNEQEEETGVALVGQLKPEVWIP-LPTKTSLVETEEEWHLDTKSD-KVPSILSSEDPR 1212
Query: 201 CPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVA 365
G + R K+SQPM L + L +VA+EILE W+DC D +D+ L VA
Sbjct: 1213 IKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDENFDDVDLEVA 1272
Query: 366 INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE 494
INGI ++ + TS G+P+ +RE G KGK + E
Sbjct: 1273 INGIDG---LDYMDRIPLATSEGFPHIL-SREKGEKGKGRFVE 1311
[43][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 75.5 bits (184), Expect = 3e-12
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
D++P G V + LP KT +V P L PCD K P++L D
Sbjct: 7 DFLPAEENVSSGVAMVAGLKQGVYIPLPTKTALVETPSEWHLDTPCD---KVPSILVPTD 63
Query: 195 PRCPP---GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
PR P G DP + + K+SQPM L+ +LL +VA+++LE W+DC + ++ L
Sbjct: 64 PRIPAQHEGYDPAKSGV-SKYSQPMSALDPELLGEVANDVLELWHDCAVDWDDFGEVSLE 122
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYF--KNNRELGVKGKHAYFEELEDGTLGLKPGS 533
A+NG G E +E + TS G+P+ +N +E KGK F + +D + L PG+
Sbjct: 123 EALNG--CEGVE-YMERIPLATSEGFPHILSRNGKE---KGKRR-FVQGDDCVVSLIPGT 175
Query: 534 IAEELHTNL 560
+ + L
Sbjct: 176 TVAKAYEEL 184
[44][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 75.5 bits (184), Expect = 3e-12
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Frame = +3
Query: 24 YIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
+ P E G VG + P V P LP KT++V E+ + K P++L +DPR
Sbjct: 1155 FYPNEQEEETGVALVGQLKPDVWIP-LPTKTSLVETEEAWHLDTKSD-KVPSILNSEDPR 1212
Query: 201 CPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVA 365
G + R K+SQPM L + L +VA+EILE W+DC D +D+ L VA
Sbjct: 1213 IKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDEDFDDVDLEVA 1272
Query: 366 INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE 494
INGI ++ + TS G+P+ +RE G KGK + E
Sbjct: 1273 INGIDG---LDYMDRIPLATSEGFPHIL-SREKGEKGKGRFVE 1311
[45][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 75.5 bits (184), Expect = 3e-12
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
D++P G V + LP KT +V P L PCD K P++L D
Sbjct: 1162 DFLPAEENVSSGVAMVAGLKQGVYIPLPTKTALVETPSEWHLDTPCD---KVPSILVPTD 1218
Query: 195 PRCPP---GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
PR P G DP + + K+SQPM L+ +LL +VA+++LE W+DC + ++ L
Sbjct: 1219 PRIPAQHEGYDPAKSGV-SKYSQPMSALDPELLGEVANDVLELWHDCAVDWDDFGEVSLE 1277
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYF--KNNRELGVKGKHAYFEELEDGTLGLKPGS 533
A+NG G E +E + TS G+P+ +N +E KGK F + +D + L PG+
Sbjct: 1278 EALNG--CEGVE-YMERIPLATSEGFPHILSRNGKE---KGKRR-FVQGDDCVVSLIPGT 1330
Query: 534 IAEELHTNL 560
+ + L
Sbjct: 1331 TVAKAYEEL 1339
[46][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 75.1 bits (183), Expect = 4e-12
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
DY+P + +G KV + LP KT +V P L PCD K P++L+ DD
Sbjct: 1153 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSSDD 1209
Query: 195 PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
PR P A K+ PM L+N LL +V +EI ++W DC E ++ L
Sbjct: 1210 PRLEVSGHTDYDPFKAGILKYKDPMGVLDNKLLIEVCEEIEQSWLDCKEEGETFEEVSLE 1269
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
AING+ + ++ + TS G+P+ +R G KGK + E + + + S+A
Sbjct: 1270 QAINGV---RDVDYMDRIPLATSEGFPHIL-SRSHGEKGKIRFVEGDSEAMMLIPGTSVA 1325
Query: 540 EEL 548
E L
Sbjct: 1326 EAL 1328
[47][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 73.9 bits (180), Expect = 8e-12
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
DY+P + +G KV + LP KT +V P L PCD K P++L+ DD
Sbjct: 9 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSSDD 65
Query: 195 PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
PR P A K+ PM ++N LL +V +EI ++W DC E ++ L
Sbjct: 66 PRLEVSGHTDYDPFKAGILKYKDPMGVVDNKLLIEVCEEIEQSWLDCKEEGETFEEVSLE 125
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
AING+ + ++ + TS G+P+ +R G KGK + E + + + S+A
Sbjct: 126 QAINGV---RDVDYMDRIPLATSEGFPHIL-SRSHGEKGKIRFVEGDSEAMMLIPGTSVA 181
Query: 540 EEL 548
E L
Sbjct: 182 EAL 184
[48][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 72.4 bits (176), Expect = 2e-11
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
DY+P + +G KV + LP KT +V P L PCD K P++L+ +D
Sbjct: 1153 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSNED 1209
Query: 195 PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
PR P A K+ PM L+N LL +V +EI ++W DC E ++ L
Sbjct: 1210 PRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLE 1269
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
AING+ + ++ + TS G+P+ +R G KGK + E + + + S++
Sbjct: 1270 QAINGVK---DVDYMDRIPLATSEGFPHIL-SRAHGEKGKIRFVEGDSEEMMLIPGTSVS 1325
Query: 540 EEL 548
E L
Sbjct: 1326 EAL 1328
[49][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 72.4 bits (176), Expect = 2e-11
Identities = 54/152 (35%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Frame = +3
Query: 66 VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVDP---PIA 230
+G + ++ KT V PES L PCD K P+VL ++DPR ++ P +
Sbjct: 1172 IGAISKEHQVSVGGKTGFVETPESWHLNTPCD---KLPSVLGRNDPRLAGTMNADYDPFS 1228
Query: 231 ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAELE 407
K+++ + D L V +EI ETWYD D ++ L VA+NG+ A LE
Sbjct: 1229 VGMTKYAKEAGPFDADTLVAVCEEIKETWYDARGDFTFEEVSLEVALNGV------ANLE 1282
Query: 408 NF---VMKTSPGYPYFKNNRELGVKGKHAYFE 494
F V+ TS GYPY + R G KGK Y E
Sbjct: 1283 YFDAIVLSTSEGYPY-RLERNPGDKGKARYVE 1313
[50][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 72.4 bits (176), Expect = 2e-11
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Frame = +3
Query: 21 DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
DY+P + +G KV + LP KT +V P L PCD K P++L+ +D
Sbjct: 1153 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSSED 1209
Query: 195 PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
PR P A K+ PM L+N LL +V +EI ++W DC E ++ L
Sbjct: 1210 PRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLE 1269
Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
AING+ + ++ + TS G+P+ +R G KGK + E + + + S++
Sbjct: 1270 QAINGVK---DVDYMDRIPLATSEGFPHIL-SRAHGEKGKIRFVEGDSEEMMLIPGTSVS 1325
Query: 540 EEL 548
E L
Sbjct: 1326 EAL 1328
[51][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 72.0 bits (175), Expect = 3e-11
Identities = 53/138 (38%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Frame = +3
Query: 108 KTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVDP---PIAALRKKFSQPMDELE 272
KT V PES L PCD K P+VL ++DPR ++ P + K+++ +
Sbjct: 1 KTGFVETPESWHLNTPCD---KLPSVLGRNDPRLAGTMNADYDPFSVGMTKYAKEAGPFD 57
Query: 273 NDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAELENF---VMKTSPGYP 440
D L V +EI ETWYD D ++ L VA+NG+ A LE F V+ TS GYP
Sbjct: 58 ADTLVAVCEEIKETWYDARGDFTFEEVSLEVALNGV------ANLEYFDAIVLSTSEGYP 111
Query: 441 YFKNNRELGVKGKHAYFE 494
Y + R G KGK Y E
Sbjct: 112 Y-RLERNPGDKGKARYVE 128
[52][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 66.2 bits (160), Expect = 2e-09
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Frame = +3
Query: 108 KTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVDP---PIAALRKKFSQPMDELE 272
KT+ V P+ L PCD K P+VL ++D R + P + K+++ +
Sbjct: 1186 KTSFVETPQEWHLDTPCD---KLPSVLKRNDVRLAGTANADYDPFSVGMTKYAKEAGPFD 1242
Query: 273 NDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAELENF---VMKTSPGYP 440
D+L V +EI ETWYD + D +++ L VA+NG+ A LE F V+ TS GYP
Sbjct: 1243 ADVLVTVCEEIKETWYDAQGDFTFDEVSLEVALNGV------ANLEYFDAIVLSTSEGYP 1296
Query: 441 YFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
Y + +R+ G KGK A F + E G + + +++
Sbjct: 1297 Y-RLDRKSGDKGK-ARFVDGEAGDYTITNSQMLQDI 1330
[53][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 61.6 bits (148), Expect = 4e-08
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +3
Query: 66 VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
+G + A KT V PE L PCD K P+VLT+ DPR V P A
Sbjct: 21 MGLIDPEHALAASGKTTFVETPEEWHLNYPCD---KLPSVLTRGDPRLAGTVHADYDPFA 77
Query: 231 ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
A K+++ + L+QV I E W D D ++++ L AING+ E+ E
Sbjct: 78 AGMSKYAREAGPFDAGSLKQVCLGITEVWEDASADFPMDEVDLDTAINGL----EDVEFF 133
Query: 405 ENFVMKTSPGYPYFKNNRELGVKGKHAY 488
+ V+ TS G+PY + +R G KGK Y
Sbjct: 134 DALVLGTSEGFPY-RLDRGPGEKGKSRY 160
[54][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 61.6 bits (148), Expect = 4e-08
Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +3
Query: 66 VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
+G + A KT V PE L PCD K P+VLT+ DPR V P A
Sbjct: 1193 MGLIDPEHALAASGKTTFVETPEEWHLNYPCD---KLPSVLTRGDPRLAGTVHADYDPFA 1249
Query: 231 ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
A K+++ + L+QV I E W D D ++++ L AING+ E+ E
Sbjct: 1250 AGMSKYAREAGPFDAGSLKQVCLGITEVWEDASADFPMDEVDLDTAINGL----EDVEFF 1305
Query: 405 ENFVMKTSPGYPYFKNNRELGVKGKHAY 488
+ V+ TS G+PY + +R G KGK Y
Sbjct: 1306 DALVLGTSEGFPY-RLDRGPGEKGKSRY 1332
[55][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 59.7 bits (143), Expect = 2e-07
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Frame = +3
Query: 66 VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
+G + A KT V P+ L PCD K P+VLT+ DPR V P A
Sbjct: 1194 MGLIEPEHALAASGKTTFVETPDEWHLDYPCD---KLPSVLTRGDPRLAGTVHADYDPFA 1250
Query: 231 ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
+ K+++ + L+QV I+E W D D ++++ L AING+ E E
Sbjct: 1251 SGMSKYAKEAGPFDAASLKQVCSGIVEIWEDASADFPMDEVDLDTAINGL----ENVEFF 1306
Query: 405 ENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
+ V+ TS G+PY + +R G KGK Y E G L + + ++
Sbjct: 1307 DALVLGTSEGFPY-RLDRGPGDKGKSRYVSG-ESGNLKITDEGVLSDI 1352
[56][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 59.7 bits (143), Expect = 2e-07
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Frame = +3
Query: 66 VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
+G + A KT V PE L PCD K P+VLT+ DPR + P A
Sbjct: 1093 MGLIEPEHALAASGKTTFVETPEEWHLDYPCD---KLPSVLTRGDPRLAGIIHADYDPFA 1149
Query: 231 ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
+ K+++ + L+QV I+E W D D ++++ L AING+ E E
Sbjct: 1150 SGMSKYAKEAGPFDAASLKQVCSGIVEIWEDASADFPMDEVDLDTAINGL----ENVEFF 1205
Query: 405 ENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
+ V+ TS G+PY + +R G KGK Y E G L + + ++
Sbjct: 1206 DALVLGTSEGFPY-RLDRGPGDKGKSRYVSG-ESGNLKITDEGVLSDI 1251
[57][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 58.2 bits (139), Expect = 5e-07
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Frame = +3
Query: 33 EFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRCPP- 209
E G + G+ K+G++ P +KT V +PE + DVP K PAVL+ DPR
Sbjct: 1483 EAGVSTLGYSKLGWLDRRHQPHNSEKTEFVPIPEKYHMD-DVPCKIPAVLSAKDPRLADI 1541
Query: 210 ----GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYD 323
G DP + +KF+ PM E++ LL V DEI + ++D
Sbjct: 1542 PQCMGYDPYKQGM-EKFAHPMQEIDEQLLATVCDEIAQEFHD 1582
[58][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 54.3 bits (129), Expect = 7e-06
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Frame = +3
Query: 33 EFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRCPP- 209
E G + G+ K+G++ P ++T V +PE + DVP K PAVL+ DPR
Sbjct: 1482 EAGVSTLGYSKLGWLDRRHQPHNSERTEFVPIPEKYHMD-DVPCKIPAVLSSKDPRLADV 1540
Query: 210 ----GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYD 323
G +P + +KF+ PM E++ LL V DEI + +++
Sbjct: 1541 PHCEGYEPYKQGM-EKFAHPMQEIDEQLLATVCDEIAQEFHE 1581
[59][TOP]
>UniRef100_Q1MNG5 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG5_9SECO
Length = 3471
Score = 53.9 bits (128), Expect = 9e-06
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Frame = +3
Query: 51 DGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIK-EPAVLTKDDPRCP--PGVDP 221
DG +G V + A +P + +S+ IK EP+VL+ D R P PG
Sbjct: 2887 DGKGNLGIVGQLPAQLVPTSVTKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWD 2946
Query: 222 PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLSVAINGIPAGGEE 395
P+ KK+ + + +++V + +++ + E+ N L V INGI
Sbjct: 2947 PMKDAVKKYGSYILPFPTEEIQEVENFLIKKFKRKENSRRTRNVNSLEVGINGIDGSDFW 3006
Query: 396 AELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELE 503
+ +E MKTSPGYPY R G +GK FEELE
Sbjct: 3007 SPIE---MKTSPGYPYIL-KRPSGAQGKKYLFEELE 3038
[60][TOP]
>UniRef100_Q1MNG4 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG4_9SECO
Length = 3471
Score = 53.9 bits (128), Expect = 9e-06
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Frame = +3
Query: 51 DGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIK-EPAVLTKDDPRCP--PGVDP 221
DG +G V + A +P + +S+ IK EP+VL+ D R P PG
Sbjct: 2887 DGKGNLGIVGQLPAQLVPTSVTKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWD 2946
Query: 222 PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLSVAINGIPAGGEE 395
P+ KK+ + + +++V + +++ + E+ N L V INGI
Sbjct: 2947 PMKDAVKKYGSYILPFPTEEIQEVENFLIKKFKRKENSRRTRNVNSLEVGINGIDGSDFW 3006
Query: 396 AELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELE 503
+ +E MKTSPGYPY R G +GK FEELE
Sbjct: 3007 SPIE---MKTSPGYPYIL-KRPSGAQGKKYLFEELE 3038