BB911791 ( RCE10954 )

[UP]


[1][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
            RepID=POL1_TBRVM
          Length = 2266

 Score =  318 bits (814), Expect = 2e-85
 Identities = 154/191 (80%), Positives = 168/191 (87%)
 Frame = +3

Query: 3    ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
            ELKSQIDYIPEFGEA DG+FK GYV   +APTLPKKTNMV VPESLRVPCDVP+KEPAVL
Sbjct: 1440 ELKSQIDYIPEFGEACDGYFKAGYVHKSEAPTLPKKTNMVPVPESLRVPCDVPVKEPAVL 1499

Query: 183  TKDDPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSV 362
            TKDDPRCP GVDPP AAL+KKF+QPM ELE ++L++VA +ILETWYDCEDHVL+DI LSV
Sbjct: 1500 TKDDPRCPIGVDPPRAALKKKFTQPMMELEQEILDEVATDILETWYDCEDHVLSDISLSV 1559

Query: 363  AINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAE 542
            AINGIPA  EEAELENFVMKTSPGYPYFKNNR   +KGKHAYFEE EDG+L LK G +A 
Sbjct: 1560 AINGIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAA 1619

Query: 543  ELHTNLVEFTK 575
            ELH NLVEFTK
Sbjct: 1620 ELHENLVEFTK 1630

[2][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
          Length = 824

 Score =  312 bits (800), Expect = 1e-83
 Identities = 151/188 (80%), Positives = 165/188 (87%)
 Frame = +3

Query: 12  SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
           SQIDYIPEFGEA DG+FK GYV   +APTLPKKTNMV VPESLRVPCDVP+KEPAVLTKD
Sbjct: 1   SQIDYIPEFGEACDGYFKAGYVHKSEAPTLPKKTNMVPVPESLRVPCDVPVKEPAVLTKD 60

Query: 192 DPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAIN 371
           DPRCP GVDPP AAL+KKF+QPM ELE ++L++VA +ILETWYDCEDHVL+DI LSVAIN
Sbjct: 61  DPRCPIGVDPPRAALKKKFTQPMMELEQEILDEVATDILETWYDCEDHVLSDISLSVAIN 120

Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
           GIPA  EEAELENFVMKTSPGYPYFKNNR   +KGKHAYFEE EDG+L LK G +A ELH
Sbjct: 121 GIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKHAYFEEAEDGSLQLKKGGMAAELH 180

Query: 552 TNLVEFTK 575
            NLVEFTK
Sbjct: 181 ENLVEFTK 188

[3][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=POL1_BRSV
          Length = 2264

 Score =  308 bits (788), Expect = 3e-82
 Identities = 147/191 (76%), Positives = 163/191 (85%)
 Frame = +3

Query: 3    ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
            EL+SQI+YIP+FGEA+DGFFK GYVP   APTLPKKTNMV VP+SLRVPCDVPIKEPAVL
Sbjct: 1438 ELQSQIEYIPKFGEAYDGFFKAGYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVL 1497

Query: 183  TKDDPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSV 362
            T  D RCP GV+PP+ AL+KKF  PM ELE ++L++VA +ILETWYDCEDHVLNDIPL V
Sbjct: 1498 TNADKRCPAGVNPPVTALKKKFEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPLVV 1557

Query: 363  AINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAE 542
            AINGIPA  EEAELENFVMKTSPGYPYFKNNR   +KGK AYFEE EDGTL LK G +A 
Sbjct: 1558 AINGIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAA 1617

Query: 543  ELHTNLVEFTK 575
            +LH NLVEFTK
Sbjct: 1618 KLHENLVEFTK 1628

[4][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
           RepID=UPI0000163E03
          Length = 824

 Score =  304 bits (778), Expect = 4e-81
 Identities = 145/188 (77%), Positives = 160/188 (85%)
 Frame = +3

Query: 12  SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
           SQI+YIP+FGEA+DGFFK GYVP   APTLPKKTNMV VP+SLRVPCDVPIKEPAVLT  
Sbjct: 1   SQIEYIPKFGEAYDGFFKAGYVPMADAPTLPKKTNMVPVPQSLRVPCDVPIKEPAVLTNA 60

Query: 192 DPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAIN 371
           D RCP GV+PP+ AL+KKF  PM ELE ++L++VA +ILETWYDCEDHVLNDIPL VAIN
Sbjct: 61  DKRCPAGVNPPVTALKKKFEHPMKELEQEILDEVATDILETWYDCEDHVLNDIPLVVAIN 120

Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
           GIPA  EEAELENFVMKTSPGYPYFKNNR   +KGK AYFEE EDGTL LK G +A +LH
Sbjct: 121 GIPADSEEAELENFVMKTSPGYPYFKNNRAEKLKGKSAYFEEAEDGTLKLKEGGMAAKLH 180

Query: 552 TNLVEFTK 575
            NLVEFTK
Sbjct: 181 ENLVEFTK 188

[5][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=POL1_GCMV
          Length = 2252

 Score =  274 bits (700), Expect = 4e-72
 Identities = 129/191 (67%), Positives = 161/191 (84%)
 Frame = +3

Query: 3    ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
            ELKSQI+YIPEFGEA +G+FKVG+V   +APT+PKKTN V VP++LRVPCD+PIKEP+++
Sbjct: 1424 ELKSQIEYIPEFGEAEEGYFKVGHVSPKEAPTMPKKTNSVQVPQALRVPCDLPIKEPSII 1483

Query: 183  TKDDPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSV 362
            +K+DPRCP  VDPP AA++KKF QPM +L+   L+++A ++LETWYDCED +L+DIPL+ 
Sbjct: 1484 SKNDPRCPANVDPPKAAMKKKFQQPMLDLDQKCLDEIAGDMLETWYDCEDSILSDIPLAT 1543

Query: 363  AINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAE 542
            AINGIPAG E+AELENFVMKTSPGYPYFK N+ LG KGKH YFEE EDG+L LK GS A 
Sbjct: 1544 AINGIPAGCEDAELENFVMKTSPGYPYFK-NKGLG-KGKHPYFEECEDGSLKLKEGSQAA 1601

Query: 543  ELHTNLVEFTK 575
            EL+ N+ +F K
Sbjct: 1602 ELYENMAQFAK 1612

[6][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
           RepID=UPI00017F0C90
          Length = 826

 Score =  268 bits (686), Expect = 2e-70
 Identities = 126/188 (67%), Positives = 158/188 (84%)
 Frame = +3

Query: 12  SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
           SQI+YIPEFGEA +G+FKVG+V   +APT+PKKTN V VP++LRVPCD+PIKEP++++K+
Sbjct: 1   SQIEYIPEFGEAEEGYFKVGHVSPKEAPTMPKKTNSVQVPQALRVPCDLPIKEPSIISKN 60

Query: 192 DPRCPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAIN 371
           DPRCP  VDPP AA++KKF QPM +L+   L+++A ++LETWYDCED +L+DIPL+ AIN
Sbjct: 61  DPRCPANVDPPKAAMKKKFQQPMLDLDQKCLDEIAGDMLETWYDCEDSILSDIPLATAIN 120

Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
           GIPAG E+AELENFVMKTSPGYPYFK N+ LG KGKH YFEE EDG+L LK GS A EL+
Sbjct: 121 GIPAGCEDAELENFVMKTSPGYPYFK-NKGLG-KGKHPYFEECEDGSLKLKEGSQAAELY 178

Query: 552 TNLVEFTK 575
            N+ +F K
Sbjct: 179 ENMAQFAK 186

[7][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=POL1_CNSV
          Length = 2336

 Score =  182 bits (463), Expect = 1e-44
 Identities = 95/202 (47%), Positives = 133/202 (65%), Gaps = 11/202 (5%)
 Frame = +3

Query: 3    ELKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVL 182
            E+KSQI+Y  + G   +G+ K+GY+   + P LPKK N V+V    R+   VPIKEP+++
Sbjct: 1488 EMKSQIEYEFKLGAHTEGYTKLGYLTKDKTPHLPKKNNAVLVKPEYRIDSPVPIKEPSII 1547

Query: 183  TKDDPRCPPG-----VDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLND 347
            + +DPRCP       +DP + A  KKF+ PMD LE+D+LE +A E+++ W DCE   L D
Sbjct: 1548 SAEDPRCPKDAEGKPIDPIVKAFEKKFTTPMDLLEDDILESIAQEMVDEWQDCESEPLCD 1607

Query: 348  IPLSVAINGIPAG--GEEAELENFV----MKTSPGYPYFKNNRELGVKGKHAYFEELEDG 509
            +PL VAINGIP     ++ E E+ V    M+TSPGYPY   ++E G+KGK AYFE   DG
Sbjct: 1608 VPLEVAINGIPGTQIDDDDEFEDAVECLKMRTSPGYPYVL-HKEPGMKGKEAYFELAPDG 1666

Query: 510  TLGLKPGSIAEELHTNLVEFTK 575
            T  LK GS+A EL+ N+V+++K
Sbjct: 1667 TRALKEGSLAAELYENIVQYSK 1688

[8][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
           RepID=UPI00003FE52F
          Length = 846

 Score =  178 bits (451), Expect = 3e-43
 Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 11/199 (5%)
 Frame = +3

Query: 12  SQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKD 191
           SQI+Y  + G   +G+ K+GY+   + P LPKK N V+V    R+   VPIKEP++++ +
Sbjct: 1   SQIEYEFKLGAHTEGYTKLGYLTKDKTPHLPKKNNAVLVKPEYRIDSPVPIKEPSIISAE 60

Query: 192 DPRCPPG-----VDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
           DPRCP       +DP + A  KKF+ PMD LE+D+LE +A E+++ W DCE   L D+PL
Sbjct: 61  DPRCPKDAEGKPIDPIVKAFEKKFTTPMDLLEDDILESIAQEMVDEWQDCESEPLCDVPL 120

Query: 357 SVAINGIPAG--GEEAELENFV----MKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLG 518
            VAINGIP     ++ E E+ V    M+TSPGYPY   ++E G+KGK AYFE   DGT  
Sbjct: 121 EVAINGIPGTQIDDDDEFEDAVECLKMRTSPGYPYVL-HKEPGMKGKEAYFELAPDGTRA 179

Query: 519 LKPGSIAEELHTNLVEFTK 575
           LK GS+A EL+ N+V+++K
Sbjct: 180 LKEGSLAAELYENIVQYSK 198

[9][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
            RepID=POL1_ARMVN
          Length = 2284

 Score =  105 bits (263), Expect = 2e-21
 Identities = 71/193 (36%), Positives = 104/193 (53%), Gaps = 3/193 (1%)
 Frame = +3

Query: 6    LKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLT 185
            ++  + Y+PE G   +G+ KVGY+    AP +P KT  + VP+ +  P   P K+PA+L+
Sbjct: 1458 VRGDVPYVPEDGIKTNGYRKVGYLMAKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILS 1516

Query: 186  KDDPRCPPGVD---PPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
             +D R    V     PI    KKF++PM  L+  LL++VA +++ TW+D  + +L D+PL
Sbjct: 1517 AEDERLIGTVHEGYTPIREGMKKFAEPMHLLDAQLLDEVAGDMVHTWFDAGE-ILEDVPL 1575

Query: 357  SVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSI 536
            S+AING     EE   +   M TS GYP     R+ G KGK  +F   E G     PG  
Sbjct: 1576 SIAING---DVEEEYFDPIAMDTSEGYPEVL-QRKNGEKGKARFFVG-EPGAREFVPGCG 1630

Query: 537  AEELHTNLVEFTK 575
             E  + +L E  K
Sbjct: 1631 PERAYLSLEEECK 1643

[10][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
           RepID=UPI00003FE537
          Length = 825

 Score =  104 bits (260), Expect = 4e-21
 Identities = 71/189 (37%), Positives = 102/189 (53%), Gaps = 3/189 (1%)
 Frame = +3

Query: 18  IDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDP 197
           + Y+PE G   +G+ KVGY+    AP +P KT  + VP+ +  P   P K+PA+L+ +D 
Sbjct: 3   VPYVPEDGIKTNGYRKVGYLMAKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILSAEDE 61

Query: 198 RCPPGVD---PPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAI 368
           R    V     PI    KKF++PM  L+  LL++VA +++ TW+D  + +L D+PLS+AI
Sbjct: 62  RLIGTVHEGYTPIREGMKKFAEPMHLLDAQLLDEVAGDMVHTWFDAGE-ILEDVPLSIAI 120

Query: 369 NGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
           NG     EE   +   M TS GYP     R+ G KGK  +F   E G     PG   E  
Sbjct: 121 NG---DVEEEYFDPIAMDTSEGYPEVL-QRKNGEKGKARFFVG-EPGAREFVPGCGPERA 175

Query: 549 HTNLVEFTK 575
           + +L E  K
Sbjct: 176 YLSLEEECK 184

[11][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
          Length = 2285

 Score =  103 bits (257), Expect = 9e-21
 Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 3/193 (1%)
 Frame = +3

Query: 6    LKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLT 185
            ++  + Y+PE G   +G+ KVGY+    AP +P KT  + VP+ +  P   P K+PA+L+
Sbjct: 1460 VRGDVPYVPEDGIKTNGYRKVGYLMRKDAPHVPSKTAFMKVPDEICFPYPNP-KQPAILS 1518

Query: 186  KDDPRCPPGVD---PPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
             +D R    V     PI    KKF++PM  L+  LL++VA ++++TW+D  +  L D+PL
Sbjct: 1519 AEDDRLKGTVHEGYTPIRDGMKKFAEPMHLLDEKLLDEVAGDMVQTWFDVGE-FLEDVPL 1577

Query: 357  SVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSI 536
            + AING     +E   +   M TS GYP     R+ G KGK  +F   E G     PG  
Sbjct: 1578 NTAING---DVDEEYFDPMAMDTSEGYPEVL-QRKAGEKGKARFFVG-EPGAREFVPGCG 1632

Query: 537  AEELHTNLVEFTK 575
             E  + +L E  K
Sbjct: 1633 PERAYLSLEEECK 1645

[12][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
            RepID=POL1_GFLV
          Length = 2284

 Score =  102 bits (255), Expect = 2e-20
 Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 3/193 (1%)
 Frame = +3

Query: 6    LKSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLT 185
            ++ ++ Y+PE G    G+ KVGY+    AP +P KT+ + VP+ L  P   P K+PA+L+
Sbjct: 1459 IRGEVPYVPEDGLVSRGYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDP-KQPAILS 1517

Query: 186  KDDPRCPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPL 356
             +D R    +      LR   KKF++PM  LE  LL++VA ++++TWYD     L DI L
Sbjct: 1518 AEDERLKGTIHEGYTPLRDGMKKFAEPMYLLEEKLLDEVAGDMVQTWYD-PGEFLEDISL 1576

Query: 357  SVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSI 536
              AING     +E   +  VM TS GYP    +R+ G KGK  +F   E G      G  
Sbjct: 1577 DQAING---DMDEEYFDPLVMDTSEGYPDVL-DRKPGEKGKARFFVG-EPGNRAFVAGCN 1631

Query: 537  AEELHTNLVEFTK 575
             E+ +  L E +K
Sbjct: 1632 PEKAYYQLEEDSK 1644

[13][TOP]
>UniRef100_UPI0000164A2C RNA-dependent RNA polymerase n=1 Tax=Grapevine fanleaf virus
           RepID=UPI0000164A2C
          Length = 335

 Score =  101 bits (251), Expect = 5e-20
 Identities = 71/190 (37%), Positives = 101/190 (53%), Gaps = 3/190 (1%)
 Frame = +3

Query: 15  QIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDD 194
           ++ Y+PE G    G+ KVGY+    AP +P KT+ + VP+ L  P   P K+PA+L+ +D
Sbjct: 2   EVPYVPEDGLVSRGYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDP-KQPAILSAED 60

Query: 195 PRCPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVA 365
            R    +      LR   KKF++PM  LE  LL++VA ++++TWYD     L DI L  A
Sbjct: 61  ERLKGTIHEGYTPLRDGMKKFAEPMYLLEEKLLDEVAGDMVQTWYD-PGEFLEDISLDQA 119

Query: 366 INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEE 545
           ING     +E   +  VM TS GYP    +R+ G KGK  +F   E G      G   E+
Sbjct: 120 ING---DMDEEYFDPLVMDTSEGYPDVL-DRKPGEKGKARFFVG-EPGNRAFVAGCNPEK 174

Query: 546 LHTNLVEFTK 575
            +  L E +K
Sbjct: 175 AYYQLEEDSK 184

[14][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
            RepID=A2ID54_9SECO
          Length = 1916

 Score =  100 bits (248), Expect = 1e-19
 Identities = 69/183 (37%), Positives = 91/183 (49%), Gaps = 19/183 (10%)
 Frame = +3

Query: 18   IDYIPEFGEAHD--------------GFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPC 152
            I Y+P F E H               G  K+G+V + V+ P    KT  V VPE +++P 
Sbjct: 1189 IPYVPHF-ECHSRMPALEERVGIDTLGCTKIGFVSNPVERPYYATKTQFVEVPEMVKIPY 1247

Query: 153  DVPIKEPAVLTKDDPRCPPGVD----PPIAALRKKFSQPMDELENDLLEQVADEILETWY 320
               +K P++L K D R   G +     P+     K+ +PM  ++  LL +VA EI+ETW+
Sbjct: 1248 H-DVKIPSILAKGDARLR-GTEHEAYDPLKNGMSKYEEPMSLVDEKLLREVAQEIVETWH 1305

Query: 321  DCEDHVLNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEEL 500
            DCED    D    V INGI     E   +  VM TS GYPY K  R +G KGK  YFE  
Sbjct: 1306 DCEDGTFGDADDDVVINGIDG---EDFFDALVMSTSEGYPYIK-ERNIGEKGKARYFEPT 1361

Query: 501  EDG 509
             DG
Sbjct: 1362 GDG 1364

[15][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
            Blight RepID=POL1_TRSVB
          Length = 2304

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 72/194 (37%), Positives = 98/194 (50%), Gaps = 16/194 (8%)
 Frame = +3

Query: 18   IDYIPE-FGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDD 194
            + Y+PE + EA  G  K+G+    + P +P+KT  V V E L +P D P K P+VL  DD
Sbjct: 1486 LSYVPEEWEEAPRGLKKLGWNDRSELPHMPRKTQYVAVNEDLAIPFDNP-KIPSVLVSDD 1544

Query: 195  PRC----PPGVDPPIAALRKKFSQPMDEL----------ENDLLEQVADEILETWYDCED 332
            PR       G DP + A+ +KF +PM +           E  L EQV D+I++TW+D   
Sbjct: 1545 PRTVGTPVEGKDPVLVAM-EKFYEPMTDFTEEEVRPGQTEVSLFEQVCDDIVQTWFDAGA 1603

Query: 333  HVLNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGT 512
                D+   V ING      + + +  +M TS GYPY    R  G KGK  YFE    G 
Sbjct: 1604 E-FEDVEDDVVING------DDDFDKLIMDTSEGYPYVL-ERTHGEKGKTRYFEG-GPGA 1654

Query: 513  LGLKPG-SIAEELH 551
              LKPG S+  + H
Sbjct: 1655 YTLKPGTSVYNDYH 1668

[16][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
            RepID=POL1_BRAV
          Length = 2094

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 68/192 (35%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
 Frame = +3

Query: 6    LKSQIDYIPEFGEAHDGFFKVGYVPHVQA-PTLPKKTNMVVVPESLR------------- 143
            L S + Y P  G   +G+ ++G + ++ A P    KT  V VP+ L              
Sbjct: 1368 LNSMLQYTPYDGICKEGYRQIGNIENIGARPYTSGKTAFVAVPQHLLYSPPVLQEKLPGS 1427

Query: 144  ---VPCDVPIKEPAVLTKDDPRCPPGV--DPPIAALRKKFSQPMDELENDLLEQVADEIL 308
               V   V +K+PA+L+KDDPR P G   DP I  + K FS PM  L+ ++  +VA +I+
Sbjct: 1428 AQPVTIQVEVKQPAILSKDDPRIPEGTSYDPLIDGMAK-FSHPMAVLDENVCNEVAQDIV 1486

Query: 309  ETWYDCEDHVLNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAY 488
            E+W+DC    L D+   +AIN    G  E + E F +++S GYPY    R+ G  GK  +
Sbjct: 1487 ESWHDCFQD-LQDVSDEIAIN----GSTEMDYEPFNLQSSEGYPYV-TQRKPGESGKIRF 1540

Query: 489  FEELEDGTLGLK 524
            FE   D   GLK
Sbjct: 1541 FE--MDPYTGLK 1550

[17][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
           RepID=Q9QRA6_9SECO
          Length = 985

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 65/186 (34%), Positives = 98/186 (52%), Gaps = 7/186 (3%)
 Frame = +3

Query: 27  IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
           I E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 282 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341

Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
           P    G D P+    +KF +PM +L+ D+LE V  ++ + +YDC+   L  +     ING
Sbjct: 342 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLENVMADMYDEFYDCQT-TLRIMSDDEVING 399

Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
              G    ++E  V  TS GYP+  + R  G KGK  + EELE     +KP     +  E
Sbjct: 400 SDFG---FKIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDIKPKYKLVVGSE 455

Query: 546 LHTNLV 563
           +H+ +V
Sbjct: 456 VHSAMV 461

[18][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
           RepID=Q9QRA8_9SECO
          Length = 985

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
 Frame = +3

Query: 27  IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
           I E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 282 IQEAGVEERGVSKVGHIEDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341

Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
           P    G D P+    +KF +PM +L+ D+LE V  ++ + +YDC+   L  +     ING
Sbjct: 342 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLENVMADMYDEFYDCQT-TLRIMSDDRVING 399

Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
              G     +E  V  TS GYP+  + R  G KGK  + EELE     +KP     +  E
Sbjct: 400 SDFG---FNIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDIKPKYKLVVGTE 455

Query: 546 LHTNLV 563
           +H+ +V
Sbjct: 456 VHSAMV 461

[19][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
           RepID=Q9QRA7_9SECO
          Length = 985

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
 Frame = +3

Query: 27  IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
           I E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 282 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341

Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
           P    G D P+    +KF +PM +L+ D+LE V  ++ + +YDC+   L  +     ING
Sbjct: 342 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQT-TLRIMSDDEVING 399

Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
              G    ++E  V  TS GYP+  + R  G KGK  + EELE      KP     +  E
Sbjct: 400 SDFG---FKIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDTKPKYKLVVGTE 455

Query: 546 LHTNLV 563
           +H+ +V
Sbjct: 456 VHSAMV 461

[20][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
           RepID=UPI00003FE53F
          Length = 711

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
 Frame = +3

Query: 27  IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
           I E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 8   IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 67

Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
           P    G D P+    +KF +PM +L+ D+LE V  ++ + +YDC+   L  +     ING
Sbjct: 68  PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQT-TLRIMSDDEVING 125

Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
              G     +E  V  TS GYP+  + R  G KGK  + EELE      KP     +  E
Sbjct: 126 SDFG---FNIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDTKPKYKLVVGTE 181

Query: 546 LHTNLV 563
           +H+ +V
Sbjct: 182 VHSAMV 187

[21][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
            RASPBERRY) RepID=POL1_TORVR
          Length = 2197

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
 Frame = +3

Query: 27   IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
            I E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 1494 IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 1553

Query: 204  P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
            P    G D P+    +KF +PM +L+ D+LE V  ++ + +YDC+   L  +     ING
Sbjct: 1554 PEAYKGYD-PLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQT-TLRIMSDDEVING 1611

Query: 375  IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPG---SIAEE 545
               G     +E  V  TS GYP+  + R  G KGK  + EELE      KP     +  E
Sbjct: 1612 SDFG---FNIEAVVKGTSEGYPFVLSRRP-GEKGKARFLEELEPQPGDTKPKYKLVVGTE 1667

Query: 546  LHTNLV 563
            +H+ +V
Sbjct: 1668 VHSAMV 1673

[22][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
           virus RepID=Q155U1_9SECO
          Length = 711

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 27  IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
           + E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 8   VQEAGIEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 67

Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
           P    G D P+    +KF +PM +L+ D+LE V  ++ + +YDC+   L  +     ING
Sbjct: 68  PEAYKGYD-PLGDAMEKFYEPMLDLDGDVLECVMADMYDEFYDCQT-TLRIMSDDEVING 125

Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKP 527
              G     +E  V  TS GYP F  +R  G KGK  + EELE      KP
Sbjct: 126 SDFG---FNIEAVVKGTSEGYP-FVLSRRAGEKGKARFLEELEPQPGDTKP 172

[23][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
           RepID=Q9QRA9_9SECO
          Length = 985

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
 Frame = +3

Query: 27  IPEFGEAHDGFFKVGYVPH-VQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRC 203
           + E G    G  KVG++    + P +  KT + +V E+  VP  V +K P++L+KDDPR 
Sbjct: 282 VREAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPRI 341

Query: 204 P---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAING 374
           P    G D P+    +KF +PM +L+ D+L  V +++ + +YDC+   L  +     ING
Sbjct: 342 PETYKGYD-PLGDAMEKFYEPMLDLDEDVLNCVMEDMHDVFYDCQPS-LRLMSDDEVING 399

Query: 375 IPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKP 527
              G     +E    ++S GYP+  + R  G KGK  Y EELE      KP
Sbjct: 400 SDFG---FNIEGCCQRSSEGYPFVLSRRP-GEKGKARYLEELEPSPGDAKP 446

[24][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
           RepID=UPI0000163DCE
          Length = 707

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 62/172 (36%), Positives = 88/172 (51%), Gaps = 19/172 (11%)
 Frame = +3

Query: 66  VGYVPHVQA-PTLPKKTNMVVVPESLR----------------VPCDVPIKEPAVLTKDD 194
           +G + ++ A P    KT  V VP+ L                 V   V +K+PA+L+KDD
Sbjct: 1   IGNIENIGARPYTSGKTAFVAVPQHLLYSPPVLQEKLPGSAQPVTIQVEVKQPAILSKDD 60

Query: 195 PRCPPGV--DPPIAALRKKFSQPMDELENDLLEQVADEILETWYDCEDHVLNDIPLSVAI 368
           PR P G   DP I  + K FS PM  L+ ++  +VA +I+E+W+DC    L D+   +AI
Sbjct: 61  PRIPEGTSYDPLIDGMAK-FSHPMAVLDENVCNEVAQDIVESWHDCFQD-LQDVSDEIAI 118

Query: 369 NGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLK 524
           N    G  E + E F +++S GYPY    R+ G  GK  +FE   D   GLK
Sbjct: 119 N----GSTEMDYEPFNLQSSEGYPYV-TQRKPGESGKIRFFE--MDPYTGLK 163

[25][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
           RepID=UPI0000163D04
          Length = 713

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
 Frame = +3

Query: 21  DYIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKD 191
           ++ P   +A +G  +VG + P +  P LPKKT++V  PE   L  PCD   K P++L K 
Sbjct: 7   NFYPIEYDAAEGIARVGELKPKLYIP-LPKKTSLVKTPEEWHLGTPCD---KVPSILVKG 62

Query: 192 DPRCPPGV----DPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIP 353
           DPR    V    DP ++ L K +S PM  L++ LL +   EIL+ W+DC  E   L ++ 
Sbjct: 63  DPRLADTVHADYDPCLSGLTK-YSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEVT 121

Query: 354 LSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGS 533
           ++ A+NG+        ++   + TS G+P+   +RE G KGK   F + +   + L PG+
Sbjct: 122 INEALNGVDG---VDYMDRIPLATSEGFPHVM-SREQGEKGKQR-FVQGDGHIVSLIPGT 176

Query: 534 IAEELHTNL 560
              E +  L
Sbjct: 177 SVHEAYETL 185

[26][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
            RepID=POL1_RCMV
          Length = 1864

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 64/189 (33%), Positives = 100/189 (52%), Gaps = 9/189 (4%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKD 191
            ++ P   +A +G  +VG + P +  P LPKKT++V  PE   L  PCD   K P++L K 
Sbjct: 1158 NFYPIEYDAAEGIARVGELKPKLYIP-LPKKTSLVKTPEEWHLGTPCD---KVPSILVKG 1213

Query: 192  DPRCPPGV----DPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIP 353
            DPR    V    DP ++ L K +S PM  L++ LL +   EIL+ W+DC  E   L ++ 
Sbjct: 1214 DPRLADTVHADYDPCLSGLTK-YSTPMSPLDSVLLGETCQEILDEWFDCLPEGFELGEVT 1272

Query: 354  LSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGS 533
            ++ A+NG+        ++   + TS G+P+   +RE G KGK   F + +   + L PG+
Sbjct: 1273 INEALNGVDG---VDYMDRIPLATSEGFPHVM-SREQGEKGKQR-FVQGDGHIVSLIPGT 1327

Query: 534  IAEELHTNL 560
               E +  L
Sbjct: 1328 SVHEAYETL 1336

[27][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
          Length = 1851

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
 Frame = +3

Query: 39   GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
            G AH G  K G YVP      LP KTN+V  P+   L +PCD   K P+VLT  D R   
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208

Query: 207  ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
                G DP +  ++K ++ PM  L+ ++L +VA +++E W+DC  E+    ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALN 1267

Query: 372  GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
            G+        +E   + TS G+P+   +R+ G KGK   F   +   + L PG+  EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAY 1322

Query: 552  TNL-VEFTK 575
              L VE  K
Sbjct: 1323 NKLTVELEK 1331

[28][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
          Length = 1851

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
 Frame = +3

Query: 39   GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
            G AH G  K G YVP      LP KTN+V  P+   L +PCD   K P+VLT  D R   
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208

Query: 207  ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
                G DP +  ++K ++ PM  L+ ++L +VA +++E W+DC  E+    ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALN 1267

Query: 372  GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
            G+        +E   + TS G+P+   +R+ G KGK   F   +   + L PG+  EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAY 1322

Query: 552  TNL-VEFTK 575
              L VE  K
Sbjct: 1323 NKLTVELEK 1331

[29][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
          Length = 1851

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
 Frame = +3

Query: 39   GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
            G AH G  K G YVP      LP KTN+V  P+   L +PCD   K P+VLT  D R   
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208

Query: 207  ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
                G DP +  ++K ++ PM  L+ ++L +VA +++E W+DC  E+    ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALN 1267

Query: 372  GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
            G+        +E   + TS G+P+   +R+ G KGK   F   +   + L PG+  EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVSGDGEEMTLIPGTSVEEAY 1322

Query: 552  TNLV 563
              L+
Sbjct: 1323 NKLI 1326

[30][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
          Length = 1851

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
 Frame = +3

Query: 39   GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCP- 206
            G AH G  K G YVP      LP KTN+V  P+   L +PCD   K P+VLT  D R   
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208

Query: 207  ---PGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAIN 371
                G DP +  ++K ++ PM  L+ ++L +VA +++E W+DC  E+    ++ LS A+N
Sbjct: 1209 TEHEGYDPFLGGIQK-YATPMMPLDEEILSKVAQDMVEEWFDCVDEEDSFEEVSLSAALN 1267

Query: 372  GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELH 551
            G+        +E   + TS G+P+   +R+ G KGK   F   +   + L PG+  EE +
Sbjct: 1268 GVEG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVSGDGEEMTLIPGTSVEEAY 1322

Query: 552  TNLV 563
              L+
Sbjct: 1323 NKLI 1326

[31][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
            RepID=O37086_9SECO
          Length = 2150

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 65/205 (31%), Positives = 95/205 (46%), Gaps = 30/205 (14%)
 Frame = +3

Query: 3    ELKSQIDY-IPEFGEAHDGFFKVGYVP-----HVQAPTLPKKTNMVVVPESLRVPC---- 152
            ++ SQ D+ IPE G+   G+ K+G++      H+  P LP     +++ + L++      
Sbjct: 1409 DVHSQGDFFIPEVGDREAGYEKIGFIDNSAKAHILVP-LPNWAGYLLILKPLQLLMRRRK 1467

Query: 153  --------DVPIKEPAVLTKDDPRCP-PGVDPPIAALRKKFSQPMDELENDLLEQVADEI 305
                       IKEPA+L+K DPR   P    P+     KF+ PM  L+  LLE V ++I
Sbjct: 1468 ENFVDAGETFEIKEPAILSKKDPRLEDPDSFDPLRTGMSKFANPMSVLDEALLEAVCEDI 1527

Query: 306  LETWYDCEDHV-----------LNDIPLSVAINGIPAGGEEAELENFVMKTSPGYPYFKN 452
              TWYD    V           L    L +A+NG+P    +A LE   + TS GYP+   
Sbjct: 1528 FTTWYDALPAVTDNQGNVSRILLEKTSLDIALNGVPG---DAYLEPMKLDTSEGYPHCV- 1583

Query: 453  NRELGVKGKHAYFEELEDGTLGLKP 527
             R  G  GK  + E  +D    LKP
Sbjct: 1584 RRGPGESGKRRFVEIDDDFHFSLKP 1608

[32][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
          Length = 1857

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 67/184 (36%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRV--PCDVPIKEPAVLTKDD 194
            DY+       DG  ++  +       +P KT++V  P  + +  PCD   K P++L+  D
Sbjct: 1152 DYLAFEEREGDGIARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCD---KYPSILSNTD 1208

Query: 195  PRCP-PGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLS 359
            PR    GV    P  A   K+  PM EL+ DLL++V DEI ETW DC++      ++ L 
Sbjct: 1209 PRLEVSGVTDYDPFKAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLE 1268

Query: 360  VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSI 536
             AINGI   G E  +E   M TS G+P+    R  G KGK  + E + ED TL L   S+
Sbjct: 1269 EAINGIK--GME-YMERIPMATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSV 1323

Query: 537  AEEL 548
             E L
Sbjct: 1324 TEAL 1327

[33][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
          Length = 1860

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 67/184 (36%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRV--PCDVPIKEPAVLTKDD 194
            DY+       DG  ++  +       +P KT++V  P  + +  PCD   K P++L+  D
Sbjct: 1155 DYLAFEEREGDGIARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCD---KYPSILSNTD 1211

Query: 195  PRCP-PGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLS 359
            PR    GV    P  A   K+  PM EL+ DLL++V DEI ETW DC++      ++ L 
Sbjct: 1212 PRLEVSGVTDYDPFKAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLE 1271

Query: 360  VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSI 536
             AINGI   G E  +E   M TS G+P+    R  G KGK  + E + ED TL L   S+
Sbjct: 1272 EAINGIK--GME-YMERIPMATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSV 1326

Query: 537  AEEL 548
             E L
Sbjct: 1327 TEAL 1330

[34][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
           virus RepID=B2KL92_9SECO
          Length = 712

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 67/184 (36%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
 Frame = +3

Query: 21  DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRV--PCDVPIKEPAVLTKDD 194
           DY+       DG  ++  +       +P KT++V  P  + +  PCD   K P++L+  D
Sbjct: 7   DYLAFEEREGDGIARIATLKKGIHIPVPTKTSLVETPAEMHLDTPCD---KYPSILSNTD 63

Query: 195 PRCP-PGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLS 359
           PR    GV    P  A   K+  PM EL+ DLL++V DEI ETW DC++      ++ L 
Sbjct: 64  PRLEVSGVTDYDPFKAGILKYQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLE 123

Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSI 536
            AINGI   G E  +E   M TS G+P+    R  G KGK  + E + ED TL L   S+
Sbjct: 124 EAINGIK--GME-YMERIPMATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSV 178

Query: 537 AEEL 548
            E L
Sbjct: 179 TEAL 182

[35][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
           virus RepID=POL1_APMV
          Length = 729

 Score = 80.1 bits (196), Expect = 1e-13
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
 Frame = +3

Query: 9   KSQIDYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVL 182
           +   +  P   E + G   VG +      + P KT+    PES  L +PC+   KEP++L
Sbjct: 29  QEHFEIFPYEQETNAGLALVGELKQGVYVSCPTKTSFERTPESYHLGLPCE---KEPSIL 85

Query: 183 TKDDPRCPPGVDP--PIAALRKKFSQPMDELENDLLEQVADEILETWYDC-EDHVLNDIP 353
           +  DPR P  V+   P  A  +K++ PM  L++DL+ +VA ++ E+W+DC +D    ++ 
Sbjct: 86  SSHDPRIPEHVEGYCPFRAGIQKYANPMGHLDHDLMYEVAHDMQESWHDCVQDFTFPEVD 145

Query: 354 LSVAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE------ELEDGTL 515
           L  AINGI        +E     TS G+P+   +R  G KGK  + E       L +GT 
Sbjct: 146 LETAINGIDM---VEYMECIPKSTSEGFPHVL-SRAPGEKGKMRFLEGDGEKFSLREGTS 201

Query: 516 GLKPGSIAEE 545
             K   + +E
Sbjct: 202 VKKAYDLLQE 211

[36][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
           RepID=UPI0000163CF4
          Length = 710

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
 Frame = +3

Query: 39  GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRC-- 203
           G AH G  K G YVP      LP KTN+V  P+   L +PCD   K P+VLT  D R   
Sbjct: 18  GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 68

Query: 204 PPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAINGI 377
               D   +    K++ PM  L+ ++L +VA +++E W+DC  E+    ++ LS A+NG+
Sbjct: 69  TEHEDMTHSWWYSKYATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGV 128

Query: 378 PAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELHTN 557
                   +E   + TS G+P+   +R+ G KGK   F   +   + L PG+  EE +  
Sbjct: 129 EG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAYNK 183

Query: 558 L-VEFTK 575
           L VE  K
Sbjct: 184 LTVELEK 190

[37][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
            Kentucky G7) RepID=POL1_BPMV
          Length = 1850

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 8/187 (4%)
 Frame = +3

Query: 39   GEAHDGFFKVG-YVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRC-- 203
            G AH G  K G YVP      LP KTN+V  P+   L +PCD   K P+VLT  D R   
Sbjct: 1158 GVAHIGELKSGVYVP------LPTKTNLVETPKEWQLDLPCD---KIPSVLTTTDERLVG 1208

Query: 204  PPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVAINGI 377
                D   +    K++ PM  L+ ++L +VA +++E W+DC  E+    ++ LS A+NG+
Sbjct: 1209 TEHEDMTHSWWYSKYATPMMPLDEEILSKVAQDMVEEWFDCVDEEDTFEEVSLSAALNGV 1268

Query: 378  PAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEELHTN 557
                    +E   + TS G+P+   +R+ G KGK   F   +   + L PG+  EE +  
Sbjct: 1269 EG---LDYMERIPLATSEGFPHVL-SRKNGEKGKRR-FVTGDGEEMSLIPGTSVEEAYNK 1323

Query: 558  L-VEFTK 575
            L VE  K
Sbjct: 1324 LTVELEK 1330

[38][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
           RepID=UPI0000163CFC
          Length = 712

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
 Frame = +3

Query: 21  DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
           D++ +     +G  KVG +       LP KTN+V  P+   +  +   KEP++L+  D R
Sbjct: 7   DFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTE-KTKEPSILSSTDLR 65

Query: 201 CPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC---EDHVLNDIPLSVAIN 371
                  P     +K+++PM  L++++L  VA +I+E W+DC   ++    ++ L VAIN
Sbjct: 66  LGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEWFDCVDPQEDTFEEVDLQVAIN 125

Query: 372 GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTL-GLKPGSIAEEL 548
           G+   G E  +E   M TS G+P+    R+ G KGK  +     DG +  L PG+   E 
Sbjct: 126 GLE--GME-YMERVPMATSEGFPHIL-TRKSGEKGKGRFV--YGDGEIFDLIPGTSVHEA 179

Query: 549 HTNLVE 566
           +  L E
Sbjct: 180 YLTLEE 185

[39][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
          Length = 1860

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 65/166 (39%), Positives = 87/166 (52%), Gaps = 9/166 (5%)
 Frame = +3

Query: 81   HVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPG----VDPPIAALRK 242
            H+  PT   KT++V  P    L  PCD   K P++L+  DPR         DP  A + K
Sbjct: 1178 HIPVPT---KTSLVETPVEWHLDTPCD---KYPSILSSSDPRLEVSGMTDYDPFKAGILK 1231

Query: 243  KFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLSVAINGIPAGGEEAELENFV 416
             +  PM EL+ DLL++V DEI ETW DC++      ++ L  AINGI   G E  +E   
Sbjct: 1232 -YQNPMGELDQDLLQEVCDEIEETWRDCQEEFETFEEVSLEEAINGIK--GLE-YMERIP 1287

Query: 417  MKTSPGYPYFKNNRELGVKGKHAYFE-ELEDGTLGLKPGSIAEELH 551
            M TS G+P+    R  G KGK  + E + ED TL L   S+ E L+
Sbjct: 1288 MATSEGFPHIL-TRSHGEKGKIRFVEGDGEDLTL-LPNTSVTEALN 1331

[40][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
            (strain DG) RepID=POL1_CPSMV
          Length = 1858

 Score = 77.8 bits (190), Expect = 6e-13
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
            D++ +     +G  KVG +       LP KTN+V  P+   +  +   KEP++L+  D R
Sbjct: 1153 DFLEKEQHVTEGIGKVGNLKKGVWVPLPTKTNLVETPKEWHLGTE-KTKEPSILSSTDLR 1211

Query: 201  CPPGVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC---EDHVLNDIPLSVAIN 371
                   P     +K+++PM  L++++L  VA +I+E W+DC   ++    ++ L VAIN
Sbjct: 1212 LGDKQYDPFVGGIQKYAEPMGILDDEVLRHVATDIVEEWFDCVDPQEDTFEEVDLQVAIN 1271

Query: 372  GIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTL-GLKPGSIAEEL 548
            G+   G E  +E   M TS G+P+    R+ G KGK  +     DG +  L PG+   E 
Sbjct: 1272 GLE--GME-YMERVPMATSEGFPHIL-TRKSGEKGKGRFV--YGDGEIFDLIPGTSVHEA 1325

Query: 549  HTNLVE 566
            +  L E
Sbjct: 1326 YLTLEE 1331

[41][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
           RepID=UPI0000163D09
          Length = 711

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
 Frame = +3

Query: 24  YIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
           + P   E   G   VG + P V  P LP KT++V   E   +      K P++L+ +DPR
Sbjct: 8   FYPNEQEEETGVALVGQLKPEVWIP-LPTKTSLVETEEEWHLDTKSD-KVPSILSSEDPR 65

Query: 201 CPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVA 365
              G +      R    K+SQPM  L  + L +VA+EILE W+DC   D   +D+ L VA
Sbjct: 66  IKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDENFDDVDLEVA 125

Query: 366 INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE 494
           INGI        ++   + TS G+P+   +RE G KGK  + E
Sbjct: 126 INGIDG---LDYMDRIPLATSEGFPHIL-SREKGEKGKGRFVE 164

[42][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
          Length = 1858

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
 Frame = +3

Query: 24   YIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
            + P   E   G   VG + P V  P LP KT++V   E   +      K P++L+ +DPR
Sbjct: 1155 FYPNEQEEETGVALVGQLKPEVWIP-LPTKTSLVETEEEWHLDTKSD-KVPSILSSEDPR 1212

Query: 201  CPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVA 365
               G +      R    K+SQPM  L  + L +VA+EILE W+DC   D   +D+ L VA
Sbjct: 1213 IKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDENFDDVDLEVA 1272

Query: 366  INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE 494
            INGI        ++   + TS G+P+   +RE G KGK  + E
Sbjct: 1273 INGIDG---LDYMDRIPLATSEGFPHIL-SREKGEKGKGRFVE 1311

[43][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
           RepID=UPI0000163D14
          Length = 711

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
 Frame = +3

Query: 21  DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
           D++P       G   V  +       LP KT +V  P    L  PCD   K P++L   D
Sbjct: 7   DFLPAEENVSSGVAMVAGLKQGVYIPLPTKTALVETPSEWHLDTPCD---KVPSILVPTD 63

Query: 195 PRCPP---GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
           PR P    G DP  + +  K+SQPM  L+ +LL +VA+++LE W+DC  +     ++ L 
Sbjct: 64  PRIPAQHEGYDPAKSGV-SKYSQPMSALDPELLGEVANDVLELWHDCAVDWDDFGEVSLE 122

Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYF--KNNRELGVKGKHAYFEELEDGTLGLKPGS 533
            A+NG    G E  +E   + TS G+P+   +N +E   KGK   F + +D  + L PG+
Sbjct: 123 EALNG--CEGVE-YMERIPLATSEGFPHILSRNGKE---KGKRR-FVQGDDCVVSLIPGT 175

Query: 534 IAEELHTNL 560
              + +  L
Sbjct: 176 TVAKAYEEL 184

[44][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
          Length = 1858

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
 Frame = +3

Query: 24   YIPEFGEAHDGFFKVGYV-PHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPR 200
            + P   E   G   VG + P V  P LP KT++V   E+  +      K P++L  +DPR
Sbjct: 1155 FYPNEQEEETGVALVGQLKPDVWIP-LPTKTSLVETEEAWHLDTKSD-KVPSILNSEDPR 1212

Query: 201  CPPGVDPPIAALR---KKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLSVA 365
               G +      R    K+SQPM  L  + L +VA+EILE W+DC   D   +D+ L VA
Sbjct: 1213 IKQGGNEGYDPFRGGVTKYSQPMGHLCGETLGEVANEILEEWHDCLEPDEDFDDVDLEVA 1272

Query: 366  INGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFE 494
            INGI        ++   + TS G+P+   +RE G KGK  + E
Sbjct: 1273 INGIDG---LDYMDRIPLATSEGFPHIL-SREKGEKGKGRFVE 1311

[45][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
            RepID=POL1_CPMV
          Length = 1866

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 9/189 (4%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
            D++P       G   V  +       LP KT +V  P    L  PCD   K P++L   D
Sbjct: 1162 DFLPAEENVSSGVAMVAGLKQGVYIPLPTKTALVETPSEWHLDTPCD---KVPSILVPTD 1218

Query: 195  PRCPP---GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
            PR P    G DP  + +  K+SQPM  L+ +LL +VA+++LE W+DC  +     ++ L 
Sbjct: 1219 PRIPAQHEGYDPAKSGV-SKYSQPMSALDPELLGEVANDVLELWHDCAVDWDDFGEVSLE 1277

Query: 360  VAINGIPAGGEEAELENFVMKTSPGYPYF--KNNRELGVKGKHAYFEELEDGTLGLKPGS 533
             A+NG    G E  +E   + TS G+P+   +N +E   KGK   F + +D  + L PG+
Sbjct: 1278 EALNG--CEGVE-YMERIPLATSEGFPHILSRNGKE---KGKRR-FVQGDDCVVSLIPGT 1330

Query: 534  IAEELHTNL 560
               + +  L
Sbjct: 1331 TVAKAYEEL 1339

[46][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
          Length = 1853

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
            DY+P   +  +G  KV  +       LP KT +V  P    L  PCD   K P++L+ DD
Sbjct: 1153 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSSDD 1209

Query: 195  PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
            PR          P  A   K+  PM  L+N LL +V +EI ++W DC  E     ++ L 
Sbjct: 1210 PRLEVSGHTDYDPFKAGILKYKDPMGVLDNKLLIEVCEEIEQSWLDCKEEGETFEEVSLE 1269

Query: 360  VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
             AING+    +   ++   + TS G+P+   +R  G KGK  + E   +  + +   S+A
Sbjct: 1270 QAINGV---RDVDYMDRIPLATSEGFPHIL-SRSHGEKGKIRFVEGDSEAMMLIPGTSVA 1325

Query: 540  EEL 548
            E L
Sbjct: 1326 EAL 1328

[47][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
           RepID=Q2TCK2_9SECO
          Length = 709

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
 Frame = +3

Query: 21  DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
           DY+P   +  +G  KV  +       LP KT +V  P    L  PCD   K P++L+ DD
Sbjct: 9   DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSSDD 65

Query: 195 PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
           PR          P  A   K+  PM  ++N LL +V +EI ++W DC  E     ++ L 
Sbjct: 66  PRLEVSGHTDYDPFKAGILKYKDPMGVVDNKLLIEVCEEIEQSWLDCKEEGETFEEVSLE 125

Query: 360 VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
            AING+    +   ++   + TS G+P+   +R  G KGK  + E   +  + +   S+A
Sbjct: 126 QAINGV---RDVDYMDRIPLATSEGFPHIL-SRSHGEKGKIRFVEGDSEAMMLIPGTSVA 181

Query: 540 EEL 548
           E L
Sbjct: 182 EAL 184

[48][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
          Length = 1853

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
            DY+P   +  +G  KV  +       LP KT +V  P    L  PCD   K P++L+ +D
Sbjct: 1153 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSNED 1209

Query: 195  PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
            PR          P  A   K+  PM  L+N LL +V +EI ++W DC  E     ++ L 
Sbjct: 1210 PRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLE 1269

Query: 360  VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
             AING+    +   ++   + TS G+P+   +R  G KGK  + E   +  + +   S++
Sbjct: 1270 QAINGVK---DVDYMDRIPLATSEGFPHIL-SRAHGEKGKIRFVEGDSEEMMLIPGTSVS 1325

Query: 540  EEL 548
            E L
Sbjct: 1326 EAL 1328

[49][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
          Length = 1853

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 54/152 (35%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
 Frame = +3

Query: 66   VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVDP---PIA 230
            +G +      ++  KT  V  PES  L  PCD   K P+VL ++DPR    ++    P +
Sbjct: 1172 IGAISKEHQVSVGGKTGFVETPESWHLNTPCD---KLPSVLGRNDPRLAGTMNADYDPFS 1228

Query: 231  ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAELE 407
                K+++     + D L  V +EI ETWYD   D    ++ L VA+NG+      A LE
Sbjct: 1229 VGMTKYAKEAGPFDADTLVAVCEEIKETWYDARGDFTFEEVSLEVALNGV------ANLE 1282

Query: 408  NF---VMKTSPGYPYFKNNRELGVKGKHAYFE 494
             F   V+ TS GYPY +  R  G KGK  Y E
Sbjct: 1283 YFDAIVLSTSEGYPY-RLERNPGDKGKARYVE 1313

[50][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
          Length = 1853

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
 Frame = +3

Query: 21   DYIPEFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDD 194
            DY+P   +  +G  KV  +       LP KT +V  P    L  PCD   K P++L+ +D
Sbjct: 1153 DYLPFAEKEGEGIEKVAMLQKGIHIPLPTKTALVETPVEWHLDTPCD---KYPSILSSED 1209

Query: 195  PRCPPGVDP---PIAALRKKFSQPMDELENDLLEQVADEILETWYDC--EDHVLNDIPLS 359
            PR          P  A   K+  PM  L+N LL +V +EI ++W DC  E     ++ L 
Sbjct: 1210 PRLEVSGQTDYDPFKAGILKYKDPMGVLDNKLLVEVCEEIEQSWLDCKEEGETFEEVSLE 1269

Query: 360  VAINGIPAGGEEAELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIA 539
             AING+    +   ++   + TS G+P+   +R  G KGK  + E   +  + +   S++
Sbjct: 1270 QAINGVK---DVDYMDRIPLATSEGFPHIL-SRAHGEKGKIRFVEGDSEEMMLIPGTSVS 1325

Query: 540  EEL 548
            E L
Sbjct: 1326 EAL 1328

[51][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
           RepID=UPI000180D482
          Length = 474

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 53/138 (38%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
 Frame = +3

Query: 108 KTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVDP---PIAALRKKFSQPMDELE 272
           KT  V  PES  L  PCD   K P+VL ++DPR    ++    P +    K+++     +
Sbjct: 1   KTGFVETPESWHLNTPCD---KLPSVLGRNDPRLAGTMNADYDPFSVGMTKYAKEAGPFD 57

Query: 273 NDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAELENF---VMKTSPGYP 440
            D L  V +EI ETWYD   D    ++ L VA+NG+      A LE F   V+ TS GYP
Sbjct: 58  ADTLVAVCEEIKETWYDARGDFTFEEVSLEVALNGV------ANLEYFDAIVLSTSEGYP 111

Query: 441 YFKNNRELGVKGKHAYFE 494
           Y +  R  G KGK  Y E
Sbjct: 112 Y-RLERNPGDKGKARYVE 128

[52][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
          Length = 1853

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
 Frame = +3

Query: 108  KTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVDP---PIAALRKKFSQPMDELE 272
            KT+ V  P+   L  PCD   K P+VL ++D R     +    P +    K+++     +
Sbjct: 1186 KTSFVETPQEWHLDTPCD---KLPSVLKRNDVRLAGTANADYDPFSVGMTKYAKEAGPFD 1242

Query: 273  NDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAELENF---VMKTSPGYP 440
             D+L  V +EI ETWYD + D   +++ L VA+NG+      A LE F   V+ TS GYP
Sbjct: 1243 ADVLVTVCEEIKETWYDAQGDFTFDEVSLEVALNGV------ANLEYFDAIVLSTSEGYP 1296

Query: 441  YFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
            Y + +R+ G KGK A F + E G   +    + +++
Sbjct: 1297 Y-RLDRKSGDKGK-ARFVDGEAGDYTITNSQMLQDI 1330

[53][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
           RepID=UPI0000163DDB
          Length = 697

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
 Frame = +3

Query: 66  VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
           +G +    A     KT  V  PE   L  PCD   K P+VLT+ DPR    V     P A
Sbjct: 21  MGLIDPEHALAASGKTTFVETPEEWHLNYPCD---KLPSVLTRGDPRLAGTVHADYDPFA 77

Query: 231 ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
           A   K+++     +   L+QV   I E W D   D  ++++ L  AING+    E+ E  
Sbjct: 78  AGMSKYAREAGPFDAGSLKQVCLGITEVWEDASADFPMDEVDLDTAINGL----EDVEFF 133

Query: 405 ENFVMKTSPGYPYFKNNRELGVKGKHAY 488
           +  V+ TS G+PY + +R  G KGK  Y
Sbjct: 134 DALVLGTSEGFPY-RLDRGPGEKGKSRY 160

[54][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
          Length = 1869

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 51/148 (34%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
 Frame = +3

Query: 66   VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
            +G +    A     KT  V  PE   L  PCD   K P+VLT+ DPR    V     P A
Sbjct: 1193 MGLIDPEHALAASGKTTFVETPEEWHLNYPCD---KLPSVLTRGDPRLAGTVHADYDPFA 1249

Query: 231  ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
            A   K+++     +   L+QV   I E W D   D  ++++ L  AING+    E+ E  
Sbjct: 1250 AGMSKYAREAGPFDAGSLKQVCLGITEVWEDASADFPMDEVDLDTAINGL----EDVEFF 1305

Query: 405  ENFVMKTSPGYPYFKNNRELGVKGKHAY 488
            +  V+ TS G+PY + +R  G KGK  Y
Sbjct: 1306 DALVLGTSEGFPY-RLDRGPGEKGKSRY 1332

[55][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
          Length = 1870

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
 Frame = +3

Query: 66   VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
            +G +    A     KT  V  P+   L  PCD   K P+VLT+ DPR    V     P A
Sbjct: 1194 MGLIEPEHALAASGKTTFVETPDEWHLDYPCD---KLPSVLTRGDPRLAGTVHADYDPFA 1250

Query: 231  ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
            +   K+++     +   L+QV   I+E W D   D  ++++ L  AING+    E  E  
Sbjct: 1251 SGMSKYAKEAGPFDAASLKQVCSGIVEIWEDASADFPMDEVDLDTAINGL----ENVEFF 1306

Query: 405  ENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
            +  V+ TS G+PY + +R  G KGK  Y    E G L +    +  ++
Sbjct: 1307 DALVLGTSEGFPY-RLDRGPGDKGKSRYVSG-ESGNLKITDEGVLSDI 1352

[56][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
          Length = 1769

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
 Frame = +3

Query: 66   VGYVPHVQAPTLPKKTNMVVVPES--LRVPCDVPIKEPAVLTKDDPRCPPGVD---PPIA 230
            +G +    A     KT  V  PE   L  PCD   K P+VLT+ DPR    +     P A
Sbjct: 1093 MGLIEPEHALAASGKTTFVETPEEWHLDYPCD---KLPSVLTRGDPRLAGIIHADYDPFA 1149

Query: 231  ALRKKFSQPMDELENDLLEQVADEILETWYDCE-DHVLNDIPLSVAINGIPAGGEEAE-L 404
            +   K+++     +   L+QV   I+E W D   D  ++++ L  AING+    E  E  
Sbjct: 1150 SGMSKYAKEAGPFDAASLKQVCSGIVEIWEDASADFPMDEVDLDTAINGL----ENVEFF 1205

Query: 405  ENFVMKTSPGYPYFKNNRELGVKGKHAYFEELEDGTLGLKPGSIAEEL 548
            +  V+ TS G+PY + +R  G KGK  Y    E G L +    +  ++
Sbjct: 1206 DALVLGTSEGFPY-RLDRGPGDKGKSRYVSG-ESGNLKITDEGVLSDI 1251

[57][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
            cherry RepID=POL1_RRVC
          Length = 2367

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
 Frame = +3

Query: 33   EFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRCPP- 209
            E G +  G+ K+G++     P   +KT  V +PE   +  DVP K PAVL+  DPR    
Sbjct: 1483 EAGVSTLGYSKLGWLDRRHQPHNSEKTEFVPIPEKYHMD-DVPCKIPAVLSAKDPRLADI 1541

Query: 210  ----GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYD 323
                G DP    + +KF+ PM E++  LL  V DEI + ++D
Sbjct: 1542 PQCMGYDPYKQGM-EKFAHPMQEIDEQLLATVCDEIAQEFHD 1582

[58][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
          Length = 2366

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
 Frame = +3

Query: 33   EFGEAHDGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIKEPAVLTKDDPRCPP- 209
            E G +  G+ K+G++     P   ++T  V +PE   +  DVP K PAVL+  DPR    
Sbjct: 1482 EAGVSTLGYSKLGWLDRRHQPHNSERTEFVPIPEKYHMD-DVPCKIPAVLSSKDPRLADV 1540

Query: 210  ----GVDPPIAALRKKFSQPMDELENDLLEQVADEILETWYD 323
                G +P    + +KF+ PM E++  LL  V DEI + +++
Sbjct: 1541 PHCEGYEPYKQGM-EKFAHPMQEIDEQLLATVCDEIAQEFHE 1581

[59][TOP]
>UniRef100_Q1MNG5 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG5_9SECO
          Length = 3471

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
 Frame = +3

Query: 51   DGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIK-EPAVLTKDDPRCP--PGVDP 221
            DG   +G V  + A  +P       + +S+       IK EP+VL+  D R P  PG   
Sbjct: 2887 DGKGNLGIVGQLPAQLVPTSVTKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWD 2946

Query: 222  PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLSVAINGIPAGGEE 395
            P+    KK+   +     + +++V + +++ +   E+     N   L V INGI      
Sbjct: 2947 PMKDAVKKYGSYILPFPTEEIQEVENFLIKKFKRKENSRRTRNVNSLEVGINGIDGSDFW 3006

Query: 396  AELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELE 503
            + +E   MKTSPGYPY    R  G +GK   FEELE
Sbjct: 3007 SPIE---MKTSPGYPYIL-KRPSGAQGKKYLFEELE 3038

[60][TOP]
>UniRef100_Q1MNG4 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG4_9SECO
          Length = 3471

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
 Frame = +3

Query: 51   DGFFKVGYVPHVQAPTLPKKTNMVVVPESLRVPCDVPIK-EPAVLTKDDPRCP--PGVDP 221
            DG   +G V  + A  +P       + +S+       IK EP+VL+  D R P  PG   
Sbjct: 2887 DGKGNLGIVGQLPAQLVPTSVTKTTICKSMIHGLIGEIKTEPSVLSAWDRRLPFPPGEWD 2946

Query: 222  PIAALRKKFSQPMDELENDLLEQVADEILETWYDCED--HVLNDIPLSVAINGIPAGGEE 395
            P+    KK+   +     + +++V + +++ +   E+     N   L V INGI      
Sbjct: 2947 PMKDAVKKYGSYILPFPTEEIQEVENFLIKKFKRKENSRRTRNVNSLEVGINGIDGSDFW 3006

Query: 396  AELENFVMKTSPGYPYFKNNRELGVKGKHAYFEELE 503
            + +E   MKTSPGYPY    R  G +GK   FEELE
Sbjct: 3007 SPIE---MKTSPGYPYIL-KRPSGAQGKKYLFEELE 3038