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[1][TOP]
>UniRef100_Q64959 ORF protein (Fragment) n=1 Tax=Artichoke italian latent virus
RepID=Q64959_9SECO
Length = 510
Score = 249 bits (637), Expect = 8e-65
Identities = 116/195 (59%), Positives = 142/195 (72%), Gaps = 4/195 (2%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKP-EGTDKEFQMFVPSR 179
S+P AP+ VE+KFEFYIRI GID PDLC+QINYKQRFGWFM+ P + T E +PSR
Sbjct: 307 SAPRAPQTVETKFEFYIRILGIDVIPDLCRQINYKQRFGWFMISPSDKTTTELDFKIPSR 366
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGT--- 350
+ N+ +K C NF NAFAIMCATTGMHWG+CI+HFTW+W N EA K +S
Sbjct: 367 IGNIGVKNTKCVNFTNAFAIMCATTGMHWGRCILHFTWSWHRNTEAGKNAREISQSRLEW 426
Query: 351 GMGTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHS 530
+ + + G R +YDN+YSIPFEFGSFAGPV SGG P EAENW+++ +TSW WIH+
Sbjct: 427 VIVLQHIILG-IRGILVYDNAYSIPFEFGSFAGPVISGGTPNEAENWVRVQSTSWQWIHA 485
Query: 531 IMASIEVLPGFKFYG 575
+ SIEVLPGF+FYG
Sbjct: 486 VTVSIEVLPGFRFYG 500
[2][TOP]
>UniRef100_UPI0000163D16 coat protein n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI0000163D16
Length = 514
Score = 220 bits (561), Expect = 5e-56
Identities = 102/196 (52%), Positives = 138/196 (70%), Gaps = 5/196 (2%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEGT--DKEFQMFVP 173
SSPMAPE +ESK E+YI+I GID+ P +C+QINY QRF WF +++P K ++ +P
Sbjct: 309 SSPMAPETMESKLEYYIQILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSKILKLTLP 368
Query: 174 SRVSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTG 353
SRV N+ K TN+VNAFAIMCATTGMH GKCI+HF+W ++G++SF +G
Sbjct: 369 SRVCNIAYKEATVTNYVNAFAIMCATTGMHAGKCILHFSWTLNKGTSFKDLQGHISFYSG 428
Query: 354 MGTKDV--HYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIH 527
MG + H+GE + +S ++PFEFGSFAGPVTSGG PF +ENW+++ T W+W+
Sbjct: 429 MGDSTIGEHHGEFHLGGPLSSSLAVPFEFGSFAGPVTSGGTPFTSENWLRVETAHWDWLT 488
Query: 528 SIMASIEVLPGFKFYG 575
S+ I+VLPGF+FYG
Sbjct: 489 SLTVDIQVLPGFRFYG 504
[3][TOP]
>UniRef100_P13026 Coat protein n=1 Tax=Grapevine chrome mosaic virus RepID=POL2_GCMV
Length = 1324
Score = 220 bits (561), Expect = 5e-56
Identities = 102/196 (52%), Positives = 138/196 (70%), Gaps = 5/196 (2%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEGT--DKEFQMFVP 173
SSPMAPE +ESK E+YI+I GID+ P +C+QINY QRF WF +++P K ++ +P
Sbjct: 1119 SSPMAPETMESKLEYYIQILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSKILKLTLP 1178
Query: 174 SRVSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTG 353
SRV N+ K TN+VNAFAIMCATTGMH GKCI+HF+W ++G++SF +G
Sbjct: 1179 SRVCNIAYKEATVTNYVNAFAIMCATTGMHAGKCILHFSWTLNKGTSFKDLQGHISFYSG 1238
Query: 354 MGTKDV--HYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIH 527
MG + H+GE + +S ++PFEFGSFAGPVTSGG PF +ENW+++ T W+W+
Sbjct: 1239 MGDSTIGEHHGEFHLGGPLSSSLAVPFEFGSFAGPVTSGGTPFTSENWLRVETAHWDWLT 1298
Query: 528 SIMASIEVLPGFKFYG 575
S+ I+VLPGF+FYG
Sbjct: 1299 SLTVDIQVLPGFRFYG 1314
[4][TOP]
>UniRef100_UPI0000163DFE capsid protein n=1 Tax=Beet ringspot virus RepID=UPI0000163DFE
Length = 520
Score = 213 bits (542), Expect = 8e-54
Identities = 100/192 (52%), Positives = 133/192 (69%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKE--FQMFVPSR 179
+PMAPE VE+ E+YI+I GI++ P LC++INYKQRF W +++ K ++ +PSR
Sbjct: 309 APMAPETVETGSEYYIQIKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKVKIPSR 368
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMG 359
+ NL K V TNFVNA AI+CATTGMH G C +HF+W W H E K G L F GMG
Sbjct: 369 IGNLSSKHVKVTNFVNALAILCATTGMHHGNCTIHFSWLW-HPAELGKQLGRLKFVQGMG 427
Query: 360 TKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIMA 539
+ H G+T ++ N++S+PF+FGSFAGP+TSGGK EAENWI+I + ++W+ S+
Sbjct: 428 INNEHIGDTMCYNSLSNTHSVPFQFGSFAGPITSGGKADEAENWIEIQSPDFSWVASLHV 487
Query: 540 SIEVLPGFKFYG 575
SIEV GFKFYG
Sbjct: 488 SIEVHEGFKFYG 499
[5][TOP]
>UniRef100_P14547 Coat protein n=1 Tax=Beet ringspot virus RepID=POL2_BRSV
Length = 1357
Score = 213 bits (542), Expect = 8e-54
Identities = 100/192 (52%), Positives = 133/192 (69%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKE--FQMFVPSR 179
+PMAPE VE+ E+YI+I GI++ P LC++INYKQRF W +++ K ++ +PSR
Sbjct: 1146 APMAPETVETGSEYYIQIKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKVKIPSR 1205
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMG 359
+ NL K V TNFVNA AI+CATTGMH G C +HF+W W H E K G L F GMG
Sbjct: 1206 IGNLSSKHVKVTNFVNALAILCATTGMHHGNCTIHFSWLW-HPAELGKQLGRLKFVQGMG 1264
Query: 360 TKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIMA 539
+ H G+T ++ N++S+PF+FGSFAGP+TSGGK EAENWI+I + ++W+ S+
Sbjct: 1265 INNEHIGDTMCYNSLSNTHSVPFQFGSFAGPITSGGKADEAENWIEIQSPDFSWVASLHV 1324
Query: 540 SIEVLPGFKFYG 575
SIEV GFKFYG
Sbjct: 1325 SIEVHEGFKFYG 1336
[6][TOP]
>UniRef100_Q88483 P2 protein n=1 Tax=Tomato black ring virus RepID=Q88483_9SECO
Length = 1344
Score = 194 bits (494), Expect = 3e-48
Identities = 93/194 (47%), Positives = 128/194 (65%), Gaps = 4/194 (2%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSR 179
+P+APE +E+ F++YI IHGI+++ LC++INY Q F WFM++ T + +P+R
Sbjct: 1142 APLAPETMETGFQYYIHIHGINAKAHLCREINYNQHFAWFMLEHLDTNTTGAVSLKIPAR 1201
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMG 359
++NL K V TNFVNA AIMCATTGMH+GKC +HF+W W + + G +S TGMG
Sbjct: 1202 MANLTSKEVQVTNFVNALAIMCATTGMHFGKCTLHFSWGWYRG-KLADQSGAVSLQTGMG 1260
Query: 360 TKDV--HYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSI 533
V H+G F S+S+PF+FGSFAGP++ GG P AENWI++ + WI S+
Sbjct: 1261 RAAVAEHFGGKHNFCYPATSFSLPFQFGSFAGPISCGGAPMAAENWIELIIPNMKWITSL 1320
Query: 534 MASIEVLPGFKFYG 575
SIEV GF+FYG
Sbjct: 1321 TVSIEVHDGFQFYG 1334
[7][TOP]
>UniRef100_UPI000016782B coat protein n=1 Tax=Tomato black ring virus RepID=UPI000016782B
Length = 511
Score = 194 bits (492), Expect = 5e-48
Identities = 91/194 (46%), Positives = 129/194 (66%), Gaps = 4/194 (2%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKE--FQMFVPSR 179
+P+APE +E+ F++YI IHGI + +LC++INY Q F WFM++ T+ + +P+R
Sbjct: 309 APLAPETMETGFQYYIHIHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVSLKIPAR 368
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMG 359
++NL K V TNFVNA AIMCATTGMH+GKC +HF+W W + + G S TGMG
Sbjct: 369 MANLTSKEVQITNFVNALAIMCATTGMHFGKCTLHFSWNWFRG-KLADQSGVFSIQTGMG 427
Query: 360 TKDV--HYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSI 533
V H+G F+ ++S+PF+FGSFAGP++ GG+P AENW+++ + WI S+
Sbjct: 428 KSTVAEHFGGRHSFNYPATNFSLPFQFGSFAGPISCGGEPMAAENWVRLQIPNMKWITSL 487
Query: 534 MASIEVLPGFKFYG 575
SIEV GF+FYG
Sbjct: 488 TVSIEVHDGFQFYG 501
[8][TOP]
>UniRef100_Q8B8X2 Polyprotein n=1 Tax=Tomato black ring virus RepID=Q8B8X2_9SECO
Length = 1343
Score = 194 bits (492), Expect = 5e-48
Identities = 91/194 (46%), Positives = 129/194 (66%), Gaps = 4/194 (2%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKE--FQMFVPSR 179
+P+APE +E+ F++YI IHGI + +LC++INY Q F WFM++ T+ + +P+R
Sbjct: 1141 APLAPETMETGFQYYIHIHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVSLKIPAR 1200
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMG 359
++NL K V TNFVNA AIMCATTGMH+GKC +HF+W W + + G S TGMG
Sbjct: 1201 MANLTSKEVQITNFVNALAIMCATTGMHFGKCTLHFSWNWFRG-KLADQSGVFSIQTGMG 1259
Query: 360 TKDV--HYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSI 533
V H+G F+ ++S+PF+FGSFAGP++ GG+P AENW+++ + WI S+
Sbjct: 1260 KSTVAEHFGGRHSFNYPATNFSLPFQFGSFAGPISCGGEPMAAENWVRLQIPNMKWITSL 1319
Query: 534 MASIEVLPGFKFYG 575
SIEV GF+FYG
Sbjct: 1320 TVSIEVHDGFQFYG 1333
[9][TOP]
>UniRef100_Q6XPY1 Viral coat protein (Fragment) n=1 Tax=Grapevine Anatolian ringspot
virus RepID=Q6XPY1_9SECO
Length = 330
Score = 187 bits (476), Expect = 4e-46
Identities = 95/193 (49%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEGTDKEFQMFVPSR 179
SSPMAPE +ES E+YI+I GI++ LC+ INYKQ FGWF +V+ T+KE + +PSR
Sbjct: 133 SSPMAPEAIESALEYYIQILGIEADTPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSR 192
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCI-VHFTWAWKHNIEASKMKGNLSFGTGM 356
++N+ K + N VNAF+IMCATTGM WG +H H +A K S G+
Sbjct: 193 IANIEYKEAEVINHVNAFSIMCATTGMQWGSPFALHLD---SHMTQADDQKICESHSAGI 249
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
T+ H G+ ++ + S IPFE GSFAGPVTSGG PFE+ENWI++ + W+W S+
Sbjct: 250 TTE--HIGDIKMCGVLATSQVIPFEIGSFAGPVTSGGTPFESENWIRVWSKHWDWFTSLS 307
Query: 537 ASIEVLPGFKFYG 575
SIEVL GF+FYG
Sbjct: 308 VSIEVLEGFRFYG 320
[10][TOP]
>UniRef100_Q6JX06 P2 protein n=1 Tax=Grapevine Anatolian ringspot virus
RepID=Q6JX06_9SECO
Length = 1350
Score = 187 bits (476), Expect = 4e-46
Identities = 95/193 (49%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWF-MVKPEGTDKEFQMFVPSR 179
SSPMAPE +ES E+YI+I GI++ LC+ INYKQ FGWF +V+ T+KE + +PSR
Sbjct: 1153 SSPMAPEAIESALEYYIQILGIEADTPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSR 1212
Query: 180 VSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCI-VHFTWAWKHNIEASKMKGNLSFGTGM 356
++N+ K + N VNAF+IMCATTGM WG +H H +A K S G+
Sbjct: 1213 IANIEYKEAEVINHVNAFSIMCATTGMQWGSPFALHLD---SHMTQADDQKICESHSAGI 1269
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
T+ H G+ ++ + S IPFE GSFAGPVTSGG PFE+ENWI++ + W+W S+
Sbjct: 1270 TTE--HIGDIKMCGVLATSQVIPFEIGSFAGPVTSGGTPFESENWIRVWSKHWDWFTSLS 1327
Query: 537 ASIEVLPGFKFYG 575
SIEVL GF+FYG
Sbjct: 1328 VSIEVLEGFRFYG 1340
[11][TOP]
>UniRef100_Q1T7B1 Coat protein (Fragment) n=1 Tax=Cycas necrotic stunt virus
RepID=Q1T7B1_CNSV
Length = 569
Score = 135 bits (340), Expect = 2e-30
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVS 185
SPM+P +++ F+ +I G +C+ IN+ QRFGWF V+P + ++ + +
Sbjct: 321 SPMSPNAIKAPFDMVFKIKGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSN 380
Query: 186 NLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGT 362
+L + + T + NAF MC T+ MH+G I+HF+W + A+ G ++ G G
Sbjct: 381 HLESEDMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGP 440
Query: 363 KDVHY-GETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIMA 539
++ ++ G R FSIY+ ++P E G+FAGP F+ NWI+ T I SI
Sbjct: 441 EEENFRGHCRNFSIYEGKATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKGRNISSIFC 500
Query: 540 SIEVLPGFKFYG 575
+IEVLPGF FYG
Sbjct: 501 AIEVLPGFSFYG 512
[12][TOP]
>UniRef100_UPI0000164A26 capsid protein n=1 Tax=Cycas necrotic stunt virus
RepID=UPI0000164A26
Length = 564
Score = 133 bits (334), Expect = 1e-29
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVS 185
SPM+P +++ F+ +I G +C+ IN+ QRFGWF V+P + ++ + +
Sbjct: 309 SPMSPNAIKAPFDMIFKIRGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSN 368
Query: 186 NLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGT 362
+L + + T + NAF MC T+ MH+G I+HF+W + A+ G ++ G G
Sbjct: 369 HLESEDMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGP 428
Query: 363 KDVHY-GETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIMA 539
++ ++ G R SIY+ ++P E G+FAGP F+ NWI+ T I SI
Sbjct: 429 EEENFRGHCRNLSIYEGRATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKGRNISSIFC 488
Query: 540 SIEVLPGFKFYG 575
+IEVLPGF FYG
Sbjct: 489 AIEVLPGFSFYG 500
[13][TOP]
>UniRef100_Q8QVU9 Coat protein n=1 Tax=Cycas necrotic stunt virus RepID=POL2_CNSV
Length = 1240
Score = 133 bits (334), Expect = 1e-29
Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 2/192 (1%)
Frame = +3
Query: 6 SPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVS 185
SPM+P +++ F+ +I G +C+ IN+ QRFGWF V+P + ++ + +
Sbjct: 992 SPMSPNAIKAPFDMIFKIRGFTPDAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSN 1051
Query: 186 NLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGT 362
+L + + T + NAF MC T+ MH+G I+HF+W + A+ G ++ G G
Sbjct: 1052 HLESEDMKVTGYTNAFLQMCQTSTMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGP 1111
Query: 363 KDVHY-GETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIMA 539
++ ++ G R SIY+ ++P E G+FAGP F+ NWI+ T I SI
Sbjct: 1112 EEENFRGHCRNLSIYEGRATVPLELGTFAGPTPLKKLDFKYRNWIRFTTPKGRNISSIFC 1171
Query: 540 SIEVLPGFKFYG 575
+IEVLPGF FYG
Sbjct: 1172 AIEVLPGFSFYG 1183
[14][TOP]
>UniRef100_A3FEN0 Coat protein (Fragment) n=2 Tax=Tomato ringspot virus
RepID=A3FEN0_9SECO
Length = 562
Score = 59.7 bits (143), Expect = 2e-07
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + I +Q+F W K D +++ P+R+
Sbjct: 317 AGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFKNFKID-DWRFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTAAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[15][TOP]
>UniRef100_A3FEM9 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=A3FEM9_9SECO
Length = 562
Score = 59.7 bits (143), Expect = 2e-07
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + I +Q+F W K D +++ P+R+
Sbjct: 317 AGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFKNFKID-DWRFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTAAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[16][TOP]
>UniRef100_A3FEN3 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=A3FEN3_9SECO
Length = 562
Score = 58.9 bits (141), Expect = 3e-07
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + I +Q+F W + D +++ P+R+
Sbjct: 317 AGPFSPQNNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKVD-DWKFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDIIDDKSEVLLKQHPLSLLISSTGFFTGRAI--FVFQWGLNATAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTATVQPLLGVCEARIPVEFKTYTGFTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[17][TOP]
>UniRef100_UPI0000164A21 capsid protein n=1 Tax=Tomato ringspot virus RepID=UPI0000164A21
Length = 562
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + I +Q+F W + D +++ P+R+
Sbjct: 317 AGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKID-DWKFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTTAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[18][TOP]
>UniRef100_Q9YPA2 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9YPA2_9SECO
Length = 564
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++ ++F I+S + + I +Q+F W + D +++ P+R+
Sbjct: 319 AGPFSPKDNKATYQFMCYFDHIESVEGVPRTIAGEQQFNWCSLTNSTID-DWRFEWPARL 377
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 378 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGVNTTAGNMKGSFSARLAFGK 435
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 436 GVEEIDQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQPTLVDRLS 494
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 495 VNVILQEGFSFYG 507
[19][TOP]
>UniRef100_Q9QRA5 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA5_9SECO
Length = 562
Score = 58.5 bits (140), Expect = 3e-07
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P ++KF F I+ + + I +Q F W + + D +++ P+R+
Sbjct: 317 AGPFSPRDNKAKFHFMCYFDHIELDEQVPRTIAGEQLFNWCVFQNFKID-DWRYEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ D + +++ ++TG G+ F + W N A MKG+ S G
Sbjct: 376 PDILDDKSDVLLRQHPLSLLISSTGFFTGRA--SFVFQWGLNANAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF +F G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVHPLVGACEARIPVEFKTFTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 INVILQGGFSFYG 505
[20][TOP]
>UniRef100_A3FEN2 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=A3FEN2_9SECO
Length = 562
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + I +Q+F W + D +++ P+R+
Sbjct: 317 AGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKID-DWRFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTTAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[21][TOP]
>UniRef100_P25247 Coat protein n=2 Tax=Tomato ringspot virus RepID=POL2_TORVR
Length = 1882
Score = 58.5 bits (140), Expect = 3e-07
Identities = 44/193 (22%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + I +Q+F W + D +++ P+R+
Sbjct: 1637 AGPFSPKDNKAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKID-DWKFEWPARL 1695
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 1696 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTTAGNMKGSFSARLAFGK 1753
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 1754 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 1812
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 1813 VNVILQEGFSFYG 1825
[22][TOP]
>UniRef100_Q9QRA3 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA3_9SECO
Length = 562
Score = 58.2 bits (139), Expect = 5e-07
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ +K++F I+ + + I +Q+F W + D +++ P+R+
Sbjct: 317 AGPFSPKDNNAKYQFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKID-DWRFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTTAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[23][TOP]
>UniRef100_Q9QRA4 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA4_9SECO
Length = 562
Score = 57.0 bits (136), Expect = 1e-06
Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ ++K++F I+ + + + +Q+F W D +++ P+R+
Sbjct: 317 AGPFSPKDNKAKYQFMCYFDHIELVEGVPRTLAGEQQFNWCSFSNFKID-DWKFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLLRQHPLSLLISSTGFFTGRAI--FVFQWGLNTTAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[24][TOP]
>UniRef100_Q24M89 Polyprotein 2 n=1 Tax=Raspberry ringspot virus RepID=Q24M89_9SECO
Length = 1107
Score = 55.5 bits (132), Expect = 3e-06
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 8/196 (4%)
Frame = +3
Query: 12 MAPEKVESKFEFYIRIHG---IDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P+ F F++ IHG I P L Q WF + D +P R+
Sbjct: 913 VGPKDSTGSFGFFLHIHGMTGIYKNPTLHSP-ERGQMHAWFRMNNIQVDN-LSFSIPGRI 970
Query: 183 SNL--VIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGM 356
++ + D TN+VN +++ + TG+H G +H TW K N+ S KG L + +
Sbjct: 971 EDMSALAGSYDITNYVNPASLLFSVTGLHGGTIRLHVTWCPKTNLGES--KGTLKYMQYL 1028
Query: 357 GTKDV--HYGETRVFSIYD-NSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIH 527
+ +YG+ + D + + G F G T+ + E + IH+ + +I
Sbjct: 1029 YHTNTVSYYGDQATRGLIDPDGFKCELRCGDFFG-ATNIAMVGDVER-LAIHSANATFIS 1086
Query: 528 SIMASIEVLPGFKFYG 575
I S E+L FYG
Sbjct: 1087 EIRVSFEILE-MSFYG 1101
[25][TOP]
>UniRef100_Q9QRA2 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA2_9SECO
Length = 562
Score = 55.1 bits (131), Expect = 4e-06
Identities = 44/193 (22%), Positives = 85/193 (44%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P +P+ +K F I+ + + I +Q+F W + D +++ P+R+
Sbjct: 317 AGPFSPKDNNAKIPFMCYFDHIELVEGVPRTIAGEQQFNWCSFRNFKID-DWRFEWPARL 375
Query: 183 SNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGM 356
+++ + + +++ ++TG G+ I F + W N A MKG+ S G
Sbjct: 376 PDILDDKSEVLFRQHPLSLLISSTGFLTGRAI--FVFQWGLNTTAGNMKGSFSARLAFGK 433
Query: 357 GTKDVHYGETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIHSIM 536
G +++ T + IP EF ++ G TSG P E +I + T + +
Sbjct: 434 GVEEIEQTSTVQPLVGACEARIPVEFKTYTGYTTSG-PPGSMEPYIYVRLTQAKLVDRLS 492
Query: 537 ASIEVLPGFKFYG 575
++ + GF FYG
Sbjct: 493 VNVILQEGFSFYG 505
[26][TOP]
>UniRef100_Q9QAG8 Putative coat protein (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q9QAG8_9SECO
Length = 514
Score = 54.7 bits (130), Expect = 5e-06
Identities = 53/196 (27%), Positives = 83/196 (42%), Gaps = 8/196 (4%)
Frame = +3
Query: 12 MAPEKVESKFEFYIRIHGIDS---QPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRV 182
+ P+ F F I IHG+ P L + WF + D +P ++
Sbjct: 320 VGPKDSVGTFGFMIHIHGLTGVYRNPTLHSG-DRSVGSAWFRIN-NIADDNLVFNIPGKI 377
Query: 183 SNLVIKG--VDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGM 356
N++ D TN+VN ++ + TG+H G +H TW N+ S KG L + +
Sbjct: 378 ENIIAAAGNYDVTNYVNPTILLFSVTGLHGGIIRLHITWCPNTNLGES--KGTLKYMQYL 435
Query: 357 --GTKDVHYGETRVFSIYD-NSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTSWNWIH 527
D +G+ I D + +++ G F G T G P E E + I++++ I
Sbjct: 436 YHTATDNFFGDQATRGIIDQDGFTVDIACGDFFG-ATRVGLPGEVER-LGIYSSNAKSIA 493
Query: 528 SIMASIEVLPGFKFYG 575
I S EVL FYG
Sbjct: 494 EIRVSFEVL-SMNFYG 508
[27][TOP]
>UniRef100_Q88894 Capsid protein n=1 Tax=Tobacco ringspot virus RepID=CAPSD_TRSV
Length = 515
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGI--DSQPDLCKQINYKQRFGWFMV---KPEGTDKEFQMF 167
S P+AP+ +EF + I+ DSQ + + + WF + KP+
Sbjct: 319 SGPIAPDAHVGSYEFIVHINTWRPDSQVHP-PMFSSSELYNWFTLTNLKPDANTGVVNFD 377
Query: 168 VPSRVSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFG 347
+P + + K T N + + A TG H+G+ V +W + +A +G++S
Sbjct: 378 IPGYIHDFASKDATVTLASNPLSWLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSIT 435
Query: 348 TGMGTKDVHY-GETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKI 500
T ++ G+ R++ + IP GS+AG SG +N+++I
Sbjct: 436 TNYRDWGAYWQGQARIYDLRRTEAEIPIFLGSYAGATPSGA--LGKQNYVRI 485
[28][TOP]
>UniRef100_Q9QAH5 Putative coat protein (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q9QAH5_9SECO
Length = 514
Score = 54.3 bits (129), Expect = 7e-06
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Frame = +3
Query: 168 VPSRVSNLVIKG--VDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS 341
+P ++ N+V D TN+VN +++ + TG+H G ++H TW N+ + KG L
Sbjct: 373 IPGKIENMVAVAGNYDVTNYVNPNSLLFSVTGLHGGVILLHITWC--PNVILGEAKGTLK 430
Query: 342 FGTGM--GTKDVHYGETRVFSIYD-NSYSIPFEFGSFAGPVTSGGKPFEAENWIKIHTTS 512
+ + T + +G+ I D + +++ G+F G T G E E + I++++
Sbjct: 431 YMQYLYHTTTENFFGDQATLGIIDQDGFTVDIACGNFFG-ATRVGLTGEIER-LGIYSSN 488
Query: 513 WNWIHSIMASIEVLPGFKFYG 575
N I I S E+L FYG
Sbjct: 489 ANSISEIRVSFEIL-SMNFYG 508
[29][TOP]
>UniRef100_Q8B5P8 Coat protein n=1 Tax=Tobacco ringspot virus RepID=Q8B5P8_TRSV
Length = 515
Score = 54.3 bits (129), Expect = 7e-06
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Frame = +3
Query: 3 SSPMAPEKVESKFEFYIRIHGI--DSQPDLCKQINYKQRFGWFMV---KPEGTDKEFQMF 167
S P+AP+ +EF + I+ DSQ + + + WF + KP+
Sbjct: 319 SGPIAPDAHVGSYEFIVHINTWRPDSQVHP-PMFSSAELYNWFTLTNLKPDANTGVVNFD 377
Query: 168 VPSRVSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFG 347
+P + + K T N + + A TG H+G+ V +W + +A +G++S
Sbjct: 378 IPGYIHDFASKDATVTLASNPLSWLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSIT 435
Query: 348 TGMGTKDVHY-GETRVFSIYDNSYSIPFEFGSFAGPVTSGGKPFEAENWIKI 500
T ++ G+ R++ + IP GS+AG SG +N+++I
Sbjct: 436 TNYRDWGAYWQGQARIYDLRRTEAEIPIFLGSYAGATPSGA--LGKQNYVRI 485