[UP]
[1][TOP] >UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus RepID=UPI0000163E03 Length = 824 Score = 328 bits (840), Expect = 2e-88 Identities = 151/193 (78%), Positives = 172/193 (89%) Frame = +1 Query: 1 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 180 RTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPH Sbjct: 532 RTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPH 591 Query: 181 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 YKP E DFIVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+P Sbjct: 592 YKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHP 651 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 540 +LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQY Sbjct: 652 ILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQY 711 Query: 541 FDAPIPQANVGQF 579 FDAP+P A +G F Sbjct: 712 FDAPLPTATIGTF 724 [2][TOP] >UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus RepID=POL1_BRSV Length = 2264 Score = 328 bits (840), Expect = 2e-88 Identities = 151/193 (78%), Positives = 172/193 (89%) Frame = +1 Query: 1 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 180 RTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPH Sbjct: 1972 RTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPH 2031 Query: 181 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 YKP E DFIVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+P Sbjct: 2032 YKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHP 2091 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 540 +LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQY Sbjct: 2092 ILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQY 2151 Query: 541 FDAPIPQANVGQF 579 FDAP+P A +G F Sbjct: 2152 FDAPLPTATIGTF 2164 [3][TOP] >UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08 Length = 824 Score = 313 bits (802), Expect = 6e-84 Identities = 150/193 (77%), Positives = 169/193 (87%) Frame = +1 Query: 1 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 180 RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPH Sbjct: 532 RTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPH 591 Query: 181 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 YKP E DFIVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI Sbjct: 592 YKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITG 651 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 540 LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQY Sbjct: 652 LLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQY 711 Query: 541 FDAPIPQANVGQF 579 FDAPIPQA+VG F Sbjct: 712 FDAPIPQASVGTF 724 [4][TOP] >UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus RepID=POL1_TBRVM Length = 2266 Score = 313 bits (802), Expect = 6e-84 Identities = 150/193 (77%), Positives = 169/193 (87%) Frame = +1 Query: 1 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 180 RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPH Sbjct: 1974 RTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPH 2033 Query: 181 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 YKP E DFIVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI Sbjct: 2034 YKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITG 2093 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 540 LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQY Sbjct: 2094 LLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQY 2153 Query: 541 FDAPIPQANVGQF 579 FDAPIPQA+VG F Sbjct: 2154 FDAPIPQASVGTF 2166 [5][TOP] >UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus RepID=UPI00017F0C90 Length = 826 Score = 266 bits (680), Expect = 9e-70 Identities = 123/192 (64%), Positives = 150/192 (78%) Frame = +1 Query: 1 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 180 RTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPH Sbjct: 531 RTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPH 590 Query: 181 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 YKP E+DF+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y Sbjct: 591 YKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYK 649 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 540 LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL Y Sbjct: 650 LLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGY 709 Query: 541 FDAPIPQANVGQ 576 FDAP+P A +G+ Sbjct: 710 FDAPLPAATIGK 721 [6][TOP] >UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus RepID=POL1_GCMV Length = 2252 Score = 266 bits (680), Expect = 9e-70 Identities = 123/192 (64%), Positives = 150/192 (78%) Frame = +1 Query: 1 RTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPH 180 RTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPH Sbjct: 1957 RTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPH 2016 Query: 181 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 YKP E+DF+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y Sbjct: 2017 YKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYK 2075 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 540 LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL Y Sbjct: 2076 LLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTGY 2135 Query: 541 FDAPIPQANVGQ 576 FDAP+P A +G+ Sbjct: 2136 FDAPLPAATIGK 2147 [7][TOP] >UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus RepID=UPI00003FE52F Length = 846 Score = 193 bits (490), Expect = 9e-48 Identities = 100/189 (52%), Positives = 125/189 (66%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 183 TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP Y Sbjct: 540 TWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFY 599 Query: 184 KPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPL 363 KP + +VST PLK G G VP++ G GIG LPT WV F + + L +A GY I+ Sbjct: 600 KPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGN 659 Query: 364 LREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYF 543 +R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYF Sbjct: 660 VRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYF 719 Query: 544 DAPIPQANV 570 DA IPQA++ Sbjct: 720 DAAIPQASL 728 [8][TOP] >UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus RepID=POL1_CNSV Length = 2336 Score = 193 bits (490), Expect = 9e-48 Identities = 100/189 (52%), Positives = 125/189 (66%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 183 TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ HF L V GP Y Sbjct: 2030 TWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFY 2089 Query: 184 KPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPL 363 KP + +VST PLK G G VP++ G GIG LPT WV F + + L +A GY I+ Sbjct: 2090 KPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGN 2149 Query: 364 LREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYF 543 +R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQYF Sbjct: 2150 VRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQYF 2209 Query: 544 DAPIPQANV 570 DA IPQA++ Sbjct: 2210 DAAIPQASL 2218 [9][TOP] >UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus RepID=A2ID54_9SECO Length = 1916 Score = 92.8 bits (229), Expect = 2e-17 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 6/186 (3%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGP 177 TW FH +QQ G + + P + ++ + + K M ++ G + H + + V GP Sbjct: 1713 TWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGP 1771 Query: 178 HY--KPCEEDFIVSTEPLKMG--VLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKG 345 + + C++ F+VST PL G H+P++ G G+GR+P+++WV F + +++ + Sbjct: 1772 KWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQI 1828 Query: 346 YLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTT 525 +IY + AGK IIF APY+A A I+F A + + RD L Y N +++ Sbjct: 1829 RVIY----DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRDMLNRYNNVCTPNSS 1883 Query: 526 GLEQYF 543 G+EQYF Sbjct: 1884 GIEQYF 1889 [10][TOP] >UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV Length = 2285 Score = 63.2 bits (152), Expect = 1e-08 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 2/182 (1%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 183 TW ++FH Q +G P +++ GV F F+ + H L + G Y Sbjct: 1971 TWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARY 2030 Query: 184 KPCEEDFIVSTEPLKMGVLGEH-VPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 +E+ ++S L G + H + +K G GIGRLP+ K+S L ++ Sbjct: 2031 IAKKEEILMSLSSLLPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMR 2082 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQ 537 L ++ LE K ++ PY+ A G + + R L Y N + P+ GL Sbjct: 2083 LCKQALEEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLALYANLLGPDRKNGLAG 2141 Query: 538 YF 543 YF Sbjct: 2142 YF 2143 [11][TOP] >UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus RepID=UPI0000163DCE Length = 707 Score = 62.4 bits (150), Expect = 2e-08 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 174 +W +FH Q +G+ P + D VD + + +A F T + + +CG Sbjct: 508 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 565 Query: 175 PHY--KPCEEDFIVSTEPLKMGVLGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNA 339 P + E F+VST PL+ G H I+Y G+GRLP+++WV F S+ A Sbjct: 566 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 625 Query: 340 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAF 450 + +R+ +GK I F PYVAN A I F Sbjct: 626 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGF 655 [12][TOP] >UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus RepID=POL1_BRAV Length = 2094 Score = 62.4 bits (150), Expect = 2e-08 Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 8/157 (5%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 174 +W +FH Q +G+ P + D VD + + +A F T + + +CG Sbjct: 1895 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 1952 Query: 175 PHY--KPCEEDFIVSTEPLKMGVLGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNA 339 P + E F+VST PL+ G H I+Y G+GRLP+++WV F S+ A Sbjct: 1953 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 2012 Query: 340 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAF 450 + +R+ +GK I F PYVAN A I F Sbjct: 2013 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGF 2042 [13][TOP] >UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus RepID=UPI00003FE537 Length = 825 Score = 58.5 bits (140), Expect = 4e-07 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 5/189 (2%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 183 TW + FH Q +G P +++ G F F+ + + H L + G Y Sbjct: 510 TWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKY 569 Query: 184 KPCEEDFIVSTEPLKMG-VLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 EE+ ++S L G + + +K G GIGRLP+ K+S L K ++ Sbjct: 570 IAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQ 621 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQ 537 L ++ K ++ PY+ A G + + +D L Y N + P GL Sbjct: 622 LCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLAT 680 Query: 538 Y---FDAPI 555 Y FD+P+ Sbjct: 681 YFTDFDSPV 689 [14][TOP] >UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus RepID=POL1_GFLV Length = 2284 Score = 58.5 bits (140), Expect = 4e-07 Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 2/182 (1%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 183 TW ESFH Q++G + P +++ G F F + + H L + G Y Sbjct: 1970 TWFQAESFHECQKSGESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKY 2029 Query: 184 KPCEEDFIVSTEPLKMGVLGE-HVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 E + ++S + G + + G GIGRLP+K +LN K L+ Sbjct: 2030 IATENEIVLSLSSVLPGDRNVFKLDLPCGDGIGRLPSKCSILNLRKPG--------LVMR 2081 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQ 537 L + + K ++ PY+ A G + Q+ L Y N + P GL Sbjct: 2082 LCKRAQDEKKTLVIRDERPYIGAWAVACICGESFG-FGQQSVLALYANLLGPNQRNGLAS 2140 Query: 538 YF 543 YF Sbjct: 2141 YF 2142 [15][TOP] >UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW RepID=POL1_ARMVN Length = 2284 Score = 58.5 bits (140), Expect = 4e-07 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 5/189 (2%) Frame = +1 Query: 4 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHY 183 TW + FH Q +G P +++ G F F+ + + H L + G Y Sbjct: 1969 TWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKY 2028 Query: 184 KPCEEDFIVSTEPLKMG-VLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 EE+ ++S L G + + +K G GIGRLP+ K+S L K ++ Sbjct: 2029 IAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQ 2080 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCI-PESTTGLEQ 537 L ++ K ++ PY+ A G + + +D L Y N + P GL Sbjct: 2081 LCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLALYANLMGPNRKNGLAT 2139 Query: 538 Y---FDAPI 555 Y FD+P+ Sbjct: 2140 YFTDFDSPV 2148 [16][TOP] >UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus RepID=UPI00003FE53F Length = 711 Score = 57.0 bits (136), Expect = 1e-06 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C SFH Q + P L+ V KF+ L V GP ++ Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 576 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G G+ T+ + + + LK+ + Sbjct: 577 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK I+F P+V+ AA I+FG++ +N +D L++Y Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 674 [17][TOP] >UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA7_9SECO Length = 985 Score = 57.0 bits (136), Expect = 1e-06 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C SFH Q + P L+ V KF+ L V GP ++ Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G G+ T+ + + + LK+ + Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK I+F P+V+ AA I+FG++ +N +D L++Y Sbjct: 904 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948 [18][TOP] >UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE RASPBERRY) RepID=POL1_TORVR Length = 2197 Score = 57.0 bits (136), Expect = 1e-06 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C SFH Q + P L+ V KF+ L V GP ++ Sbjct: 2005 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 2062 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G G+ T+ + + + LK+ + Sbjct: 2063 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 2115 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK I+F P+V+ AA I+FG++ +N +D L++Y Sbjct: 2116 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 2160 [19][TOP] >UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA8_9SECO Length = 985 Score = 56.6 bits (135), Expect = 1e-06 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C SFH Q + P L+ V KF+ L V GP ++ Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G G+ T+ + + + LK+ + Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK ++F P+V+ AA I+FG++ +N +D L++Y Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948 [20][TOP] >UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA6_9SECO Length = 985 Score = 56.2 bits (134), Expect = 2e-06 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C SFH Q + P L+ V KF+ L V GP ++ Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWR 850 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G G+ T+ + + + LK+ + Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK ++F P+V+ AA I+FG++ +N +D L++Y Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948 [21][TOP] >UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q155U1_9SECO Length = 711 Score = 56.2 bits (134), Expect = 2e-06 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C SFH Q + P L+ V KF+ L V GP ++ Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWR 576 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G G+ T+ + + + LK+ + Sbjct: 577 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK I+F P+V+ AA I+FG++ +N +D L++Y Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGASIG-MNAQDLLINY 674 [22][TOP] >UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus RepID=Q9QRA9_9SECO Length = 985 Score = 55.5 bits (132), Expect = 3e-06 Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 2/166 (1%) Frame = +1 Query: 7 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 186 W C +FH Q + P L+ V KF+ L V GP ++ Sbjct: 793 WRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWR 850 Query: 187 PCEED--FIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 360 + D +VS LK G + P+ YG G+G+ T+ + + K + Sbjct: 851 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH------ 904 Query: 361 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHY 498 +R+ GK I+F P+V+ AA I+FG+ T +N +D L +Y Sbjct: 905 -MRDSWNEGKTIVFRCEGPFVSGWAAAISFGT-TVGMNAQDLLRNY 948