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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 322 bits (826), Expect = 1e-86
Identities = 149/191 (78%), Positives = 168/191 (87%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML+
Sbjct: 491 EELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLK 550
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
+DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+
Sbjct: 551 YDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGV 610
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI+P+LR Q+EAGKR++FMSPAP
Sbjct: 611 CGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAP 670
Query: 541 YVANNAALIAF 573
YVANNAALIAF
Sbjct: 671 YVANNAALIAF 681
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 322 bits (826), Expect = 1e-86
Identities = 149/191 (78%), Positives = 168/191 (87%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML+
Sbjct: 1931 EELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLK 1990
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
+DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+
Sbjct: 1991 YDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGV 2050
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
GEHVPI+YG GVG LPTK WV+ FG+ S LKN GYLI+P+LR Q+EAGKR++FMSPAP
Sbjct: 2051 CGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAP 2110
Query: 541 YVANNAALIAF 573
YVANNAALIAF
Sbjct: 2111 YVANNAALIAF 2121
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 305 bits (780), Expect = 2e-81
Identities = 145/191 (75%), Positives = 164/191 (85%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
EEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM +
Sbjct: 491 EELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQK 550
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
+DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+
Sbjct: 551 YDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGV 610
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
GE+VPI +G G+G LPTK WV FGK S LKN+KGYLI LLREQ+EAGKR+IFM PAP
Sbjct: 611 QGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAP 670
Query: 541 YVANNAALIAF 573
YVANNAALI+F
Sbjct: 671 YVANNAALISF 681
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 305 bits (780), Expect = 2e-81
Identities = 145/191 (75%), Positives = 164/191 (85%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
EEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM +
Sbjct: 1933 EELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQK 1992
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
+DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+
Sbjct: 1993 YDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGV 2052
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
GE+VPI +G G+G LPTK WV FGK S LKN+KGYLI LLREQ+EAGKR+IFM PAP
Sbjct: 2053 QGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAP 2112
Query: 541 YVANNAALIAF 573
YVANNAALI+F
Sbjct: 2113 YVANNAALISF 2123
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 281 bits (718), Expect = 3e-74
Identities = 130/191 (68%), Positives = 158/191 (82%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLR
Sbjct: 490 EELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLR 549
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
HDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G
Sbjct: 550 HDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG- 608
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
G H+PIK GGGVG LPT WV +FG+ S LKN GY Y LL EQ+E GKR++FMS AP
Sbjct: 609 EGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAP 668
Query: 541 YVANNAALIAF 573
YVA NAALI+F
Sbjct: 669 YVAGNAALISF 679
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 281 bits (718), Expect = 3e-74
Identities = 130/191 (68%), Positives = 158/191 (82%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLR
Sbjct: 1916 EELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLR 1975
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
HDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G
Sbjct: 1976 HDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG- 2034
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
G H+PIK GGGVG LPT WV +FG+ S LKN GY Y LL EQ+E GKR++FMS AP
Sbjct: 2035 EGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAP 2094
Query: 541 YVANNAALIAF 573
YVA NAALI+F
Sbjct: 2095 YVAGNAALISF 2105
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 184 bits (467), Expect = 4e-45
Identities = 93/190 (48%), Positives = 124/190 (65%)
Frame = +1
Query: 4 ELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRH 183
EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM +
Sbjct: 499 ELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAY 558
Query: 184 DPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGIL 363
PA +D G +F +FMH S+ GN+ HF L V GP YKP + +VST PLK G
Sbjct: 559 QPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGES 618
Query: 364 GEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPY 543
G VP++ G G+G LPT WV F + + L +A GY I+ +R +E+GK ++F S APY
Sbjct: 619 GYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPY 678
Query: 544 VANNAALIAF 573
VA NAAL+AF
Sbjct: 679 VAGNAALMAF 688
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 184 bits (467), Expect = 4e-45
Identities = 93/190 (48%), Positives = 124/190 (65%)
Frame = +1
Query: 4 ELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRH 183
EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM +
Sbjct: 1989 ELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAY 2048
Query: 184 DPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGIL 363
PA +D G +F +FMH S+ GN+ HF L V GP YKP + +VST PLK G
Sbjct: 2049 QPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGES 2108
Query: 364 GEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPY 543
G VP++ G G+G LPT WV F + + L +A GY I+ +R +E+GK ++F S APY
Sbjct: 2109 GYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPY 2168
Query: 544 VANNAALIAF 573
VA NAAL+AF
Sbjct: 2169 VAGNAALMAF 2178
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 100 bits (249), Expect = 8e-20
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
Frame = +1
Query: 16 NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 195
N AL+E++ H D EF +RSF+V+++P D TW FH +QQ G + + P +
Sbjct: 1677 NARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQA 1735
Query: 196 VLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG-- 357
++ + + K M ++ G + H + + V GP + + C++ F+VST PL
Sbjct: 1736 SMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEK 1794
Query: 358 ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPA 537
G H+P++ G G+GR+P+++WV F + +++ + +IY + AGK IIF A
Sbjct: 1795 FSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY----DAYAAGKTIIFKDVA 1847
Query: 538 PYVANNAALIAF 573
PY+A A I+F
Sbjct: 1848 PYIAGWTAAISF 1859
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 87.0 bits (214), Expect = 9e-16
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
++LV NVN AL+EL+LH D + F VR+F++ +LP + TW ++FH Q +G
Sbjct: 1928 QKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGES 1987
Query: 178 RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
P +++ GV F F+ + H L + G Y +E+ ++S L G
Sbjct: 1988 NWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPG 2047
Query: 358 ILGEH-VPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
+ H + +K G G+GRLP+ K+S L ++ L ++ LE K ++
Sbjct: 2048 DVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMRLCKQALEEKKTLVIRDE 2099
Query: 535 APYV 546
PY+
Sbjct: 2100 RPYI 2103
[11][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 80.5 bits (197), Expect = 9e-14
Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 2/191 (1%)
Frame = +1
Query: 7 LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
L LN VAL ELYLHND ++F VR+F+V ++ W C +FH Q +
Sbjct: 752 LFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWA 811
Query: 187 PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 812 PVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANE 869
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
G + P+ YG GVG+ T+ + ++ K + +R+ GK I+F P
Sbjct: 870 GGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH-------MRDSWNEGKTIVFRCEGP 922
Query: 541 YVANNAALIAF 573
+V+ AA I+F
Sbjct: 923 FVSGWAAAISF 933
[12][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 79.7 bits (195), Expect = 1e-13
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 2/184 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +G
Sbjct: 467 QKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGES 526
Query: 178 RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
P +++ G F F+ + + H L + G Y EE+ ++S L G
Sbjct: 527 GWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPG 586
Query: 358 -ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
I + +K G G+GRLP+ K+S L K ++ L ++ K ++
Sbjct: 587 DINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIKEKKTLVIRDE 638
Query: 535 APYV 546
PY+
Sbjct: 639 RPYI 642
[13][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 79.7 bits (195), Expect = 1e-13
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 2/184 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +G
Sbjct: 1926 QKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGES 1985
Query: 178 RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
P +++ G F F+ + + H L + G Y EE+ ++S L G
Sbjct: 1986 GWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPG 2045
Query: 358 -ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
I + +K G G+GRLP+ K+S L K ++ L ++ K ++
Sbjct: 2046 DINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIKEKKTLVIRDE 2097
Query: 535 APYV 546
PY+
Sbjct: 2098 RPYI 2101
[14][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 78.6 bits (192), Expect = 3e-13
Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Frame = +1
Query: 16 NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 195
NV+ AL+ELYLH + F +R F+ R +W +FH Q +G+ P
Sbjct: 473 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 530
Query: 196 VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGI 360
+ D VD + + +A F T + + +CGP + E F+VST PL+
Sbjct: 531 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 588
Query: 361 LGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMS 531
G H I+Y GVGRLP+++WV F S+ A+ +R+ +GK I F
Sbjct: 589 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRD 641
Query: 532 PAPYVANNAALIAF 573
PYVAN A I F
Sbjct: 642 DPPYVANWCAAIGF 655
[15][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 78.6 bits (192), Expect = 3e-13
Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
Frame = +1
Query: 16 NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 195
NV+ AL+ELYLH + F +R F+ R +W +FH Q +G+ P
Sbjct: 1860 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 1917
Query: 196 VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGI 360
+ D VD + + +A F T + + +CGP + E F+VST PL+
Sbjct: 1918 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 1975
Query: 361 LGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMS 531
G H I+Y GVGRLP+++WV F S+ A+ +R+ +GK I F
Sbjct: 1976 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRD 2028
Query: 532 PAPYVANNAALIAF 573
PYVAN A I F
Sbjct: 2029 DPPYVANWCAAIGF 2042
[16][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 78.2 bits (191), Expect = 4e-13
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
++L+ NVN AL+ELYLH D F+ VR+F+ +LP + TW ESFH Q++G
Sbjct: 1927 QKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGES 1986
Query: 178 RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
+ P +++ G F F + + H L + G Y E + ++S + G
Sbjct: 1987 GYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLPG 2046
Query: 358 ILGE-HVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
+ + G G+GRLP+K +++ K L+ L + + K ++
Sbjct: 2047 DRNVFKLDLPCGDGIGRLPSKCSILNLRKPG--------LVMRLCKRAQDEKKTLVIRDE 2098
Query: 535 APYV 546
PY+
Sbjct: 2099 RPYI 2102
[17][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 77.4 bits (189), Expect = 7e-13
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
+ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 476 KSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKP 535
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKM 354
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 536 WSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKA 593
Query: 355 GILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
G + P+ YG G G+ T+ + ++ + LK+ + +R+ GK I+F
Sbjct: 594 NEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCE 646
Query: 535 APYVANNAALIAF 573
P+V+ AA I+F
Sbjct: 647 GPFVSGWAAAISF 659
[18][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 77.4 bits (189), Expect = 7e-13
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
+ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 750 KSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKP 809
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKM 354
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 810 WSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKA 867
Query: 355 GILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
G + P+ YG G G+ T+ + ++ + LK+ + +R+ GK I+F
Sbjct: 868 NEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCE 920
Query: 535 APYVANNAALIAF 573
P+V+ AA I+F
Sbjct: 921 GPFVSGWAAAISF 933
[19][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 77.4 bits (189), Expect = 7e-13
Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
+ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 1962 KSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKP 2021
Query: 181 HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKM 354
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 2022 WSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKA 2079
Query: 355 GILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
G + P+ YG G G+ T+ + ++ + LK+ + +R+ GK I+F
Sbjct: 2080 NEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCE 2132
Query: 535 APYVANNAALIAF 573
P+V+ AA I+F
Sbjct: 2133 GPFVSGWAAAISF 2145
[20][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 77.0 bits (188), Expect = 9e-13
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Frame = +1
Query: 7 LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 752 LFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWS 811
Query: 187 PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 812 PVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANE 869
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
G + P+ YG G G+ T+ + ++ + LK+ + +R+ GK ++F P
Sbjct: 870 GGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGP 922
Query: 541 YVANNAALIAF 573
+V+ AA I+F
Sbjct: 923 FVSGWAAAISF 933
[21][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q155U1_9SECO
Length = 711
Score = 77.0 bits (188), Expect = 9e-13
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Frame = +1
Query: 7 LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 478 LFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWS 537
Query: 187 PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 538 PVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANE 595
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
G + P+ YG G G+ T+ + ++ + LK+ + +R+ GK I+F P
Sbjct: 596 GGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGP 648
Query: 541 YVANNAALIAF 573
+V+ AA I+F
Sbjct: 649 FVSGWAAAISF 659
[22][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 76.3 bits (186), Expect = 2e-12
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
Frame = +1
Query: 7 LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 752 LFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWS 811
Query: 187 PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
P L+ V KF+ L V GP ++ + D +VS LK
Sbjct: 812 PVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANE 869
Query: 361 LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
G + P+ YG G G+ T+ + ++ + LK+ + +R+ GK ++F P
Sbjct: 870 GGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGP 922
Query: 541 YVANNAALIAF 573
+V+ AA I+F
Sbjct: 923 FVSGWAAAISF 933
[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 67.0 bits (162), Expect = 1e-09
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 3/189 (1%)
Frame = +1
Query: 16 NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD---QFRTWAFCESFHSSQQTGMLRHD 186
NV AL ELY D +EF +R+F++ RLP+ + + W C ++ TG +
Sbjct: 1980 NVQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDN 2039
Query: 187 PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILG 366
PA VLD + K FM + N + + VCGP + + + L G G
Sbjct: 2040 PAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETG 2099
Query: 367 EHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYV 546
+ + G +PT +V SF ++ K L E+G + F APY
Sbjct: 2100 VQIKPVHAATQGAMPTAKFVESF------RSIKKRPELELAISAYESGSNLYFKGCAPYN 2153
Query: 547 ANNAALIAF 573
A I+F
Sbjct: 2154 DIWACAISF 2162