BB911108 ( RCE10170 )

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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=UPI0000163E03
          Length = 824

 Score =  322 bits (826), Expect = 1e-86
 Identities = 149/191 (78%), Positives = 168/191 (87%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            EEL+LNVNVALMELYLHND +EF RVR F++  LPL   QFRTWAFCE+FHS+QQTGML+
Sbjct: 491  EELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLK 550

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
            +DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+
Sbjct: 551  YDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGV 610

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             GEHVPI+YG GVG LPTK WV+ FG+ S LKN  GYLI+P+LR Q+EAGKR++FMSPAP
Sbjct: 611  CGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAP 670

Query: 541  YVANNAALIAF 573
            YVANNAALIAF
Sbjct: 671  YVANNAALIAF 681

[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=POL1_BRSV
          Length = 2264

 Score =  322 bits (826), Expect = 1e-86
 Identities = 149/191 (78%), Positives = 168/191 (87%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            EEL+LNVNVALMELYLHND +EF RVR F++  LPL   QFRTWAFCE+FHS+QQTGML+
Sbjct: 1931 EELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLK 1990

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
            +DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+
Sbjct: 1991 YDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGV 2050

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             GEHVPI+YG GVG LPTK WV+ FG+ S LKN  GYLI+P+LR Q+EAGKR++FMSPAP
Sbjct: 2051 CGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAP 2110

Query: 541  YVANNAALIAF 573
            YVANNAALIAF
Sbjct: 2111 YVANNAALIAF 2121

[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
          Length = 824

 Score =  305 bits (780), Expect = 2e-81
 Identities = 145/191 (75%), Positives = 164/191 (85%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            EEL+LNVNVALMELYLHND  EFQRVR F+  RLPL+V Q RTWAFCE+FHS+QQTGM +
Sbjct: 491  EELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQK 550

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
            +DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+
Sbjct: 551  YDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGV 610

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             GE+VPI +G G+G LPTK WV  FGK S LKN+KGYLI  LLREQ+EAGKR+IFM PAP
Sbjct: 611  QGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAP 670

Query: 541  YVANNAALIAF 573
            YVANNAALI+F
Sbjct: 671  YVANNAALISF 681

[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
            RepID=POL1_TBRVM
          Length = 2266

 Score =  305 bits (780), Expect = 2e-81
 Identities = 145/191 (75%), Positives = 164/191 (85%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            EEL+LNVNVALMELYLHND  EFQRVR F+  RLPL+V Q RTWAFCE+FHS+QQTGM +
Sbjct: 1933 EELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQK 1992

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
            +DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+
Sbjct: 1993 YDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGV 2052

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             GE+VPI +G G+G LPTK WV  FGK S LKN+KGYLI  LLREQ+EAGKR+IFM PAP
Sbjct: 2053 QGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAP 2112

Query: 541  YVANNAALIAF 573
            YVANNAALI+F
Sbjct: 2113 YVANNAALISF 2123

[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=UPI00017F0C90
          Length = 826

 Score =  281 bits (718), Expect = 3e-74
 Identities = 130/191 (68%), Positives = 158/191 (82%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLR
Sbjct: 490  EELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLR 549

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
            HDPA +LD ++G +F +FM  S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G 
Sbjct: 550  HDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG- 608

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             G H+PIK GGGVG LPT  WV +FG+ S LKN  GY  Y LL EQ+E GKR++FMS AP
Sbjct: 609  EGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAP 668

Query: 541  YVANNAALIAF 573
            YVA NAALI+F
Sbjct: 669  YVAGNAALISF 679

[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=POL1_GCMV
          Length = 2252

 Score =  281 bits (718), Expect = 3e-74
 Identities = 130/191 (68%), Positives = 158/191 (82%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLR
Sbjct: 1916 EELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLR 1975

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGI 360
            HDPA +LD ++G +F +FM  S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G 
Sbjct: 1976 HDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG- 2034

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             G H+PIK GGGVG LPT  WV +FG+ S LKN  GY  Y LL EQ+E GKR++FMS AP
Sbjct: 2035 EGVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAP 2094

Query: 541  YVANNAALIAF 573
            YVA NAALI+F
Sbjct: 2095 YVAGNAALISF 2105

[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=UPI00003FE52F
          Length = 846

 Score =  184 bits (467), Expect = 4e-45
 Identities = 93/190 (48%), Positives = 124/190 (65%)
 Frame = +1

Query: 4    ELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRH 183
            EL LNV VAL ELYLH + +EFQRVR+F+  ++ +L   + TWA  E+FH S+QTGM  +
Sbjct: 499  ELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAY 558

Query: 184  DPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGIL 363
             PA  +D   G +F +FMH S+ GN+ HF    L V GP YKP  +  +VST PLK G  
Sbjct: 559  QPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGES 618

Query: 364  GEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPY 543
            G  VP++ G G+G LPT  WV  F + + L +A GY I+  +R  +E+GK ++F S APY
Sbjct: 619  GYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPY 678

Query: 544  VANNAALIAF 573
            VA NAAL+AF
Sbjct: 679  VAGNAALMAF 688

[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=POL1_CNSV
          Length = 2336

 Score =  184 bits (467), Expect = 4e-45
 Identities = 93/190 (48%), Positives = 124/190 (65%)
 Frame = +1

Query: 4    ELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRH 183
            EL LNV VAL ELYLH + +EFQRVR+F+  ++ +L   + TWA  E+FH S+QTGM  +
Sbjct: 1989 ELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAY 2048

Query: 184  DPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGIL 363
             PA  +D   G +F +FMH S+ GN+ HF    L V GP YKP  +  +VST PLK G  
Sbjct: 2049 QPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGES 2108

Query: 364  GEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPY 543
            G  VP++ G G+G LPT  WV  F + + L +A GY I+  +R  +E+GK ++F S APY
Sbjct: 2109 GYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPY 2168

Query: 544  VANNAALIAF 573
            VA NAAL+AF
Sbjct: 2169 VAGNAALMAF 2178

[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
            RepID=A2ID54_9SECO
          Length = 1916

 Score =  100 bits (249), Expect = 8e-20
 Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 6/192 (3%)
 Frame = +1

Query: 16   NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 195
            N   AL+E++ H D  EF  +RSF+V+++P   D   TW     FH +QQ G + + P +
Sbjct: 1677 NARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQA 1735

Query: 196  VLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG-- 357
             ++ +  +   K M ++  G + H  +    + V GP +  + C++ F+VST PL     
Sbjct: 1736 SMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEK 1794

Query: 358  ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPA 537
              G H+P++ G G+GR+P+++WV  F +   +++ +  +IY    +   AGK IIF   A
Sbjct: 1795 FSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY----DAYAAGKTIIFKDVA 1847

Query: 538  PYVANNAALIAF 573
            PY+A   A I+F
Sbjct: 1848 PYIAGWTAAISF 1859

[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
          Length = 2285

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
            ++LV NVN AL+EL+LH D + F  VR+F++ +LP     +  TW   ++FH  Q +G  
Sbjct: 1928 QKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGES 1987

Query: 178  RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
               P  +++   GV F  F+       + H     L + G  Y   +E+ ++S   L  G
Sbjct: 1988 NWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPG 2047

Query: 358  ILGEH-VPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
             +  H + +K G G+GRLP+        K+S L      ++  L ++ LE  K ++    
Sbjct: 2048 DVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMRLCKQALEEKKTLVIRDE 2099

Query: 535  APYV 546
             PY+
Sbjct: 2100 RPYI 2103

[11][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA9_9SECO
          Length = 985

 Score = 80.5 bits (197), Expect = 9e-14
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 2/191 (1%)
 Frame = +1

Query: 7    LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
            L LN  VAL ELYLHND ++F  VR+F+V ++         W  C +FH  Q +      
Sbjct: 752  LFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWA 811

Query: 187  PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
            P   L+    V   KF+               L V GP ++  + D   +VS   LK   
Sbjct: 812  PVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANE 869

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             G + P+ YG GVG+  T+  + ++ K    +          +R+    GK I+F    P
Sbjct: 870  GGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH-------MRDSWNEGKTIVFRCEGP 922

Query: 541  YVANNAALIAF 573
            +V+  AA I+F
Sbjct: 923  FVSGWAAAISF 933

[12][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
           RepID=UPI00003FE537
          Length = 825

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 2/184 (1%)
 Frame = +1

Query: 1   EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
           ++LV NVN AL+ELYLH D +  + VR F++ +LP     +  TW   + FH  Q +G  
Sbjct: 467 QKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGES 526

Query: 178 RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
              P  +++   G  F  F+  +    + H     L + G  Y   EE+ ++S   L  G
Sbjct: 527 GWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPG 586

Query: 358 -ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
            I    + +K G G+GRLP+        K+S L   K  ++  L    ++  K ++    
Sbjct: 587 DINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIKEKKTLVIRDE 638

Query: 535 APYV 546
            PY+
Sbjct: 639 RPYI 642

[13][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
            RepID=POL1_ARMVN
          Length = 2284

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 2/184 (1%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
            ++LV NVN AL+ELYLH D +  + VR F++ +LP     +  TW   + FH  Q +G  
Sbjct: 1926 QKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGES 1985

Query: 178  RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
               P  +++   G  F  F+  +    + H     L + G  Y   EE+ ++S   L  G
Sbjct: 1986 GWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPG 2045

Query: 358  -ILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
             I    + +K G G+GRLP+        K+S L   K  ++  L    ++  K ++    
Sbjct: 2046 DINAVKLTLKCGDGIGRLPS--------KASVLSQRKPGIVMQLCARAIKEKKTLVIRDE 2097

Query: 535  APYV 546
             PY+
Sbjct: 2098 RPYI 2101

[14][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
            RepID=UPI0000163DCE
          Length = 707

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
 Frame = +1

Query: 16   NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 195
            NV+ AL+ELYLH +   F  +R F+  R         +W    +FH  Q +G+    P  
Sbjct: 473  NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 530

Query: 196  VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGI 360
            + D    VD  +   +     +A F T +   + +CGP +     E  F+VST PL+   
Sbjct: 531  MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 588

Query: 361  LGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMS 531
             G   H  I+Y   GVGRLP+++WV  F  S+    A+       +R+   +GK I F  
Sbjct: 589  RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRD 641

Query: 532  PAPYVANNAALIAF 573
              PYVAN  A I F
Sbjct: 642  DPPYVANWCAAIGF 655

[15][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
            RepID=POL1_BRAV
          Length = 2094

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 8/194 (4%)
 Frame = +1

Query: 16   NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 195
            NV+ AL+ELYLH +   F  +R F+  R         +W    +FH  Q +G+    P  
Sbjct: 1860 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 1917

Query: 196  VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGI 360
            + D    VD  +   +     +A F T +   + +CGP +     E  F+VST PL+   
Sbjct: 1918 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 1975

Query: 361  LGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMS 531
             G   H  I+Y   GVGRLP+++WV  F  S+    A+       +R+   +GK I F  
Sbjct: 1976 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYFRD 2028

Query: 532  PAPYVANNAALIAF 573
              PYVAN  A I F
Sbjct: 2029 DPPYVANWCAAIGF 2042

[16][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
            RepID=POL1_GFLV
          Length = 2284

 Score = 78.2 bits (191), Expect = 4e-13
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 2/184 (1%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGML 177
            ++L+ NVN AL+ELYLH D   F+ VR+F+  +LP     +  TW   ESFH  Q++G  
Sbjct: 1927 QKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGES 1986

Query: 178  RHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG 357
             + P  +++   G  F  F   +    + H     L + G  Y   E + ++S   +  G
Sbjct: 1987 GYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLPG 2046

Query: 358  ILGE-HVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
                  + +  G G+GRLP+K  +++  K          L+  L +   +  K ++    
Sbjct: 2047 DRNVFKLDLPCGDGIGRLPSKCSILNLRKPG--------LVMRLCKRAQDEKKTLVIRDE 2098

Query: 535  APYV 546
             PY+
Sbjct: 2099 RPYI 2102

[17][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
            RepID=UPI00003FE53F
          Length = 711

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            + L LN  VAL ELYLH D ++F  VR+F+V ++         W  C SFH  Q +    
Sbjct: 476  KSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKP 535

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKM 354
              P   L+    V   KF+               L V GP ++  + D   +VS   LK 
Sbjct: 536  WSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKA 593

Query: 355  GILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
               G + P+ YG G G+  T+  + ++ +   LK+ +       +R+    GK I+F   
Sbjct: 594  NEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCE 646

Query: 535  APYVANNAALIAF 573
             P+V+  AA I+F
Sbjct: 647  GPFVSGWAAAISF 659

[18][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA7_9SECO
          Length = 985

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            + L LN  VAL ELYLH D ++F  VR+F+V ++         W  C SFH  Q +    
Sbjct: 750  KSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKP 809

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKM 354
              P   L+    V   KF+               L V GP ++  + D   +VS   LK 
Sbjct: 810  WSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKA 867

Query: 355  GILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
               G + P+ YG G G+  T+  + ++ +   LK+ +       +R+    GK I+F   
Sbjct: 868  NEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCE 920

Query: 535  APYVANNAALIAF 573
             P+V+  AA I+F
Sbjct: 921  GPFVSGWAAAISF 933

[19][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
            RASPBERRY) RepID=POL1_TORVR
          Length = 2197

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 57/193 (29%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
 Frame = +1

Query: 1    EELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLR 180
            + L LN  VAL ELYLH D ++F  VR+F+V ++         W  C SFH  Q +    
Sbjct: 1962 KSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKP 2021

Query: 181  HDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKM 354
              P   L+    V   KF+               L V GP ++  + D   +VS   LK 
Sbjct: 2022 WSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKA 2079

Query: 355  GILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSP 534
               G + P+ YG G G+  T+  + ++ +   LK+ +       +R+    GK I+F   
Sbjct: 2080 NEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCE 2132

Query: 535  APYVANNAALIAF 573
             P+V+  AA I+F
Sbjct: 2133 GPFVSGWAAAISF 2145

[20][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA8_9SECO
          Length = 985

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
 Frame = +1

Query: 7    LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
            L LN  VAL ELYLH D ++F  VR+F+V ++         W  C SFH  Q +      
Sbjct: 752  LFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWS 811

Query: 187  PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
            P   L+    V   KF+               L V GP ++  + D   +VS   LK   
Sbjct: 812  PVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANE 869

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             G + P+ YG G G+  T+  + ++ +   LK+ +       +R+    GK ++F    P
Sbjct: 870  GGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGP 922

Query: 541  YVANNAALIAF 573
            +V+  AA I+F
Sbjct: 923  FVSGWAAAISF 933

[21][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q155U1_9SECO
          Length = 711

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
 Frame = +1

Query: 7    LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
            L LN  VAL ELYLH D ++F  VR+F+V ++         W  C SFH  Q +      
Sbjct: 478  LFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWS 537

Query: 187  PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
            P   L+    V   KF+               L V GP ++  + D   +VS   LK   
Sbjct: 538  PVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANE 595

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             G + P+ YG G G+  T+  + ++ +   LK+ +       +R+    GK I+F    P
Sbjct: 596  GGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGP 648

Query: 541  YVANNAALIAF 573
            +V+  AA I+F
Sbjct: 649  FVSGWAAAISF 659

[22][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA6_9SECO
          Length = 985

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 2/191 (1%)
 Frame = +1

Query: 7    LVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHD 186
            L LN  VAL ELYLH D ++F  VR+F+V ++         W  C SFH  Q +      
Sbjct: 752  LFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWS 811

Query: 187  PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGI 360
            P   L+    V   KF+               L V GP ++  + D   +VS   LK   
Sbjct: 812  PVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANE 869

Query: 361  LGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAP 540
             G + P+ YG G G+  T+  + ++ +   LK+ +       +R+    GK ++F    P
Sbjct: 870  GGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGP 922

Query: 541  YVANNAALIAF 573
            +V+  AA I+F
Sbjct: 923  FVSGWAAAISF 933

[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
            Blight RepID=POL1_TRSVB
          Length = 2304

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 3/189 (1%)
 Frame = +1

Query: 16   NVNVALMELYLHNDSKEFQRVRSFFVARLPLLVD---QFRTWAFCESFHSSQQTGMLRHD 186
            NV  AL ELY   D +EF  +R+F++ RLP+  +   +   W  C     ++ TG    +
Sbjct: 1980 NVQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDN 2039

Query: 187  PASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILG 366
            PA VLD +     K FM  +   N +      + VCGP +      + +    L  G  G
Sbjct: 2040 PAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETG 2099

Query: 367  EHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYV 546
              +   +    G +PT  +V SF      ++ K      L     E+G  + F   APY 
Sbjct: 2100 VQIKPVHAATQGAMPTAKFVESF------RSIKKRPELELAISAYESGSNLYFKGCAPYN 2153

Query: 547  ANNAALIAF 573
               A  I+F
Sbjct: 2154 DIWACAISF 2162