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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 344 bits (882), Expect = 3e-93
Identities = 168/192 (87%), Positives = 180/192 (93%)
Frame = +1
Query: 1 PGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAF 180
P TNEAINCDYS FDGLLNAQVIECIA MIN+LYALSGESEVQQAQRYNMLMALVGRYAF
Sbjct: 270 PKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQRYNMLMALVGRYAF 329
Query: 181 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDN 360
VG +V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDN
Sbjct: 330 VGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDN 389
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTG 540
LISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G
Sbjct: 390 LISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNG 449
Query: 541 VIQAPLDMTAIF 576
++QAPLD +AIF
Sbjct: 450 IVQAPLDRSAIF 461
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 344 bits (882), Expect = 3e-93
Identities = 168/192 (87%), Positives = 180/192 (93%)
Frame = +1
Query: 1 PGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAF 180
P TNEAINCDYS FDGLLNAQVIECIA MIN+LYALSGESEVQQAQRYNMLMALVGRYAF
Sbjct: 1710 PKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQQAQRYNMLMALVGRYAF 1769
Query: 181 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDN 360
VG +V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDN
Sbjct: 1770 VGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDN 1829
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTG 540
LISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G
Sbjct: 1830 LISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNG 1889
Query: 541 VIQAPLDMTAIF 576
++QAPLD +AIF
Sbjct: 1890 IVQAPLDRSAIF 1901
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 339 bits (869), Expect = 1e-91
Identities = 165/192 (85%), Positives = 179/192 (93%)
Frame = +1
Query: 1 PGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAF 180
P TNEAINCDYS FDGLLN Q+IECIA MIN+LYALSGES+VQQAQRYNMLMALVGRYAF
Sbjct: 270 PKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQAQRYNMLMALVGRYAF 329
Query: 181 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDN 360
VGQ+V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDN
Sbjct: 330 VGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDN 389
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTG 540
LISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G
Sbjct: 390 LISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNG 449
Query: 541 VIQAPLDMTAIF 576
++QAPLD +AIF
Sbjct: 450 IVQAPLDRSAIF 461
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 339 bits (869), Expect = 1e-91
Identities = 165/192 (85%), Positives = 179/192 (93%)
Frame = +1
Query: 1 PGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAF 180
P TNEAINCDYS FDGLLN Q+IECIA MIN+LYALSGES+VQQAQRYNMLMALVGRYAF
Sbjct: 1712 PKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQQAQRYNMLMALVGRYAF 1771
Query: 181 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDN 360
VGQ+V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDN
Sbjct: 1772 VGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDN 1831
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTG 540
LISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G
Sbjct: 1832 LISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNG 1891
Query: 541 VIQAPLDMTAIF 576
++QAPLD +AIF
Sbjct: 1892 IVQAPLDRSAIF 1903
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 283 bits (725), Expect = 5e-75
Identities = 142/191 (74%), Positives = 162/191 (84%), Gaps = 1/191 (0%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
TNEAINCDYS FDGLL Q++E +A MIN+LY SGESEV QAQR NM+MAL GRYA VG
Sbjct: 270 TNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEVMQAQRLNMIMALCGRYALVG 329
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 366
+V+KVNCGLPSGFALTVV+NS+FNEILIRYAY+ LAP PEK F VCL+VYGDDNLI
Sbjct: 330 TQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLI 389
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF-LKLDTGV 543
SV+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE+KPF ELDFLKRKF + + G
Sbjct: 390 SVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQ 449
Query: 544 IQAPLDMTAIF 576
+ APLD +AIF
Sbjct: 450 VWAPLDKSAIF 460
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 283 bits (725), Expect = 5e-75
Identities = 142/191 (74%), Positives = 162/191 (84%), Gaps = 1/191 (0%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
TNEAINCDYS FDGLL Q++E +A MIN+LY SGESEV QAQR NM+MAL GRYA VG
Sbjct: 1696 TNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEVMQAQRLNMIMALCGRYALVG 1755
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 366
+V+KVNCGLPSGFALTVV+NS+FNEILIRYAY+ LAP PEK F VCL+VYGDDNLI
Sbjct: 1756 TQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLI 1815
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF-LKLDTGV 543
SV+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE+KPF ELDFLKRKF + + G
Sbjct: 1816 SVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQ 1875
Query: 544 IQAPLDMTAIF 576
+ APLD +AIF
Sbjct: 1876 VWAPLDKSAIF 1886
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 234 bits (598), Expect = 3e-60
Identities = 117/190 (61%), Positives = 144/190 (75%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ AINCDYS+FDGLLN+QV+ CIANMIN +Y E+ V + QRYNM+ AL GR A G
Sbjct: 280 SDRAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVSKRQRYNMINALFGRLAITG 339
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 366
Q+V +V GLPSGFALTVV+NSVFNEIL+RY ++ L P++ F V L+VYGDDNL+
Sbjct: 340 QEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLM 399
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
S A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+
Sbjct: 400 SCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVV 459
Query: 547 QAPLDMTAIF 576
QAPLD+TAIF
Sbjct: 460 QAPLDLTAIF 469
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 234 bits (598), Expect = 3e-60
Identities = 117/190 (61%), Positives = 144/190 (75%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ AINCDYS+FDGLLN+QV+ CIANMIN +Y E+ V + QRYNM+ AL GR A G
Sbjct: 1770 SDRAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVSKRQRYNMINALFGRLAITG 1829
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 366
Q+V +V GLPSGFALTVV+NSVFNEIL+RY ++ L P++ F V L+VYGDDNL+
Sbjct: 1830 QEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLM 1889
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
S A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+
Sbjct: 1890 SCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVV 1949
Query: 547 QAPLDMTAIF 576
QAPLD+TAIF
Sbjct: 1950 QAPLDLTAIF 1959
[9][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 201 bits (511), Expect = 3e-50
Identities = 102/187 (54%), Positives = 130/187 (69%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N INKLY ++ R N+LMA+ GR++ GQ+V
Sbjct: 281 ALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEHSIVRGNLLMAMYGRWSVCGQRV 335
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
F+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+
Sbjct: 336 FEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIK 395
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 396 PDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAP 455
Query: 556 LDMTAIF 576
LD+ AI+
Sbjct: 456 LDLQAIY 462
[10][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 201 bits (511), Expect = 3e-50
Identities = 102/187 (54%), Positives = 130/187 (69%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N INKLY ++ R N+LMA+ GR++ GQ+V
Sbjct: 555 ALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEHSIVRGNLLMAMYGRWSVCGQRV 609
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
F+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+
Sbjct: 610 FEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIK 669
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 670 PDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAP 729
Query: 556 LDMTAIF 576
LD+ AI+
Sbjct: 730 LDLQAIY 736
[11][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 201 bits (511), Expect = 3e-50
Identities = 102/187 (54%), Positives = 130/187 (69%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N INKLY ++ R N+LMA+ GR++ GQ+V
Sbjct: 1767 ALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEHSIVRGNLLMAMYGRWSVCGQRV 1821
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
F+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+
Sbjct: 1822 FEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIK 1881
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 1882 PDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAP 1941
Query: 556 LDMTAIF 576
LD+ AI+
Sbjct: 1942 LDLQAIY 1948
[12][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 201 bits (510), Expect = 4e-50
Identities = 102/187 (54%), Positives = 129/187 (68%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N INKLY ++ R N+LMA+ GR++ GQ+V
Sbjct: 555 ALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEHSIVRGNLLMAMYGRWSVCGQRV 609
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
F+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+
Sbjct: 610 FEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIK 669
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNGE I+ LA KV ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 670 PDTMKYFNGEQIKTILARYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAP 729
Query: 556 LDMTAIF 576
LD+ AI+
Sbjct: 730 LDLQAIY 736
[13][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 200 bits (509), Expect = 6e-50
Identities = 102/187 (54%), Positives = 129/187 (68%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N INKLY ++ R N+LMA+ GR++ GQ+V
Sbjct: 555 ALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEHSIVRGNLLMAMYGRWSVCGQRV 609
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
F+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+
Sbjct: 610 FEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIK 669
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNGE I+ LA KV ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 670 PDTMKYFNGEQIKTILANIKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAP 729
Query: 556 LDMTAIF 576
LD+ AI+
Sbjct: 730 LDLQAIY 736
[14][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 199 bits (507), Expect = 1e-49
Identities = 102/187 (54%), Positives = 129/187 (68%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N IN+LY ++ R N+LMA+ GR++ GQ+V
Sbjct: 555 AMNCDYSRFDGLLNYQAYVHIVNFINRLY-----NDEHTIVRGNLLMAMYGRWSICGQRV 609
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
F+V G+PSG ALTV++NS+FNE+LIRY YR P+P F Q VCLIVYGDDNLISV
Sbjct: 610 FEVRAGMPSGCALTVIINSLFNEMLIRYVYRVTVPRPLVNNFNQEVCLIVYGDDNLISVK 669
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNG+ I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 670 PDTMKYFNGDRIKEVLAKFKVTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAP 729
Query: 556 LDMTAIF 576
LD+ AIF
Sbjct: 730 LDLQAIF 736
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 194 bits (493), Expect = 4e-48
Identities = 97/187 (51%), Positives = 129/187 (68%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A+NCDYS FDGLLN Q I N IN+LY ++ R N+LMA+ GR++ GQ+V
Sbjct: 281 ALNCDYSRFDGLLNYQAYVHIVNFINRLY-----NDEHSTVRGNLLMAMYGRWSVCGQRV 335
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
++V G+PSG ALTV++NS+FNE+LI Y YR P+ F+Q VCLIVYGDDNLIS+
Sbjct: 336 YEVRAGMPSGCALTVIINSLFNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIK 395
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P +FNGE I+ TLA+ ++ ITDGSDK++P + +KP +LDFLKR F G + AP
Sbjct: 396 PDTMKYFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAP 455
Query: 556 LDMTAIF 576
LD+ AI+
Sbjct: 456 LDLQAIY 462
[16][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 191 bits (486), Expect = 3e-47
Identities = 97/187 (51%), Positives = 129/187 (68%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
AINCDY++FDGLL Q++E I MINK+Y SE + QR N+LM++V R + G +V
Sbjct: 270 AINCDYASFDGLLTGQILEKIGTMINKMYI---GSEASKIQRLNLLMSIVNRKSICGARV 326
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
++V G+PSG ALTV++NS+FNE LIR+ +R + RF Q V L++YGDDNLI+V
Sbjct: 327 YEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVH 386
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F KL+ G + AP
Sbjct: 387 PDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAP 446
Query: 556 LDMTAIF 576
LD+ +++
Sbjct: 447 LDLASVY 453
[17][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 191 bits (486), Expect = 3e-47
Identities = 97/187 (51%), Positives = 129/187 (68%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
AINCDY++FDGLL Q++E I MINK+Y SE + QR N+LM++V R + G +V
Sbjct: 1657 AINCDYASFDGLLTGQILEKIGTMINKMYI---GSEASKIQRLNLLMSIVNRKSICGARV 1713
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
++V G+PSG ALTV++NS+FNE LIR+ +R + RF Q V L++YGDDNLI+V
Sbjct: 1714 YEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVH 1773
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAP 555
P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F KL+ G + AP
Sbjct: 1774 PDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAP 1833
Query: 556 LDMTAIF 576
LD+ +++
Sbjct: 1834 LDLASVY 1840
[18][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 189 bits (479), Expect = 2e-46
Identities = 93/190 (48%), Positives = 129/190 (67%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
+ A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+ + R N+LMA+ R + G
Sbjct: 1471 SENALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQKSKNGRKNLLMAICNRKSLCG 1527
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 366
++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+VYGDDNLI
Sbjct: 1528 ADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFNEYVTLLVYGDDNLI 1587
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
+V PS FNG+ I+ T+A+ +V ITDGSDK +PT+ KP LDFLKR F D G +
Sbjct: 1588 AVDPSILEVFNGDVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQV 1647
Query: 547 QAPLDMTAIF 576
APLD TAI+
Sbjct: 1648 YAPLDKTAIY 1657
[19][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 186 bits (473), Expect = 9e-46
Identities = 100/198 (50%), Positives = 131/198 (66%), Gaps = 11/198 (5%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALS-------GESEVQ----QAQRYNMLMAL 162
A NCDYS FDGL++ QV++ I M+NK Y+ + G+ E+ Q RYN+LM++
Sbjct: 1764 AYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNLKKKGKGELPGSPPQLARYNLLMSI 1823
Query: 163 VGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLI 342
GR +VF+V G+ G ALTV++NSVFNEILIRY Y+ + P PE RF+ V L+
Sbjct: 1824 FGRKCLARSQVFEVRGGIRRG-ALTVLLNSVFNEILIRYVYKTVIPSPEFNRFETFVTLV 1882
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
VYGDDNLI+V PS F GE I+ TLA KK+ ITDGSDK +P +E+KP +LDFLKR F
Sbjct: 1883 VYGDDNLIAVDPSMQKIFTGEVIKKTLARKKITITDGSDKLSPVLEAKPLAQLDFLKRSF 1942
Query: 523 LKLDTGVIQAPLDMTAIF 576
L D+G + LD T I+
Sbjct: 1943 LVSDSGQVMPALDRTCIY 1960
[20][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 168 bits (425), Expect = 3e-40
Identities = 84/184 (45%), Positives = 120/184 (65%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
NCDY AFDGL+ Q++ IA+MIN Y V QR N+L+A+ GR + G +V+
Sbjct: 1732 NCDYKAFDGLITEQILSTIADMINAGY----RDPVGNRQRKNLLLAICGRLSICGNQVYA 1787
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 381
G+PSG ALTVV+NS+F E+L+RY ++K+ P K F + V LI YGDDN+ +VA S
Sbjct: 1788 TEAGIPSGCALTVVLNSIFKELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQS 1847
Query: 382 CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLD 561
+F G+A+++ +A+ V ITDG DK TI ++P EL+FLKR F++ G+I APL+
Sbjct: 1848 VMQYFTGDALKMQMAKLGVTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLE 1907
Query: 562 MTAI 573
+I
Sbjct: 1908 KLSI 1911
[21][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 166 bits (419), Expect = 2e-39
Identities = 89/189 (47%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDY +FDGLL+ QV+ IA MIN+L G S+ Q R N+LMA RYA +V++V
Sbjct: 280 CDYKSFDGLLSKQVMTVIATMINRL---CGGSQESQTMRMNLLMACCSRYAISKNEVWRV 336
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLIS 369
CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V L+ YGDDNLIS
Sbjct: 337 ECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLIS 396
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 549
V+ AS FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ +
Sbjct: 397 VSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYD 455
Query: 550 APLDMTAIF 576
+P + ++++
Sbjct: 456 SPEEKSSLW 464
[22][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 166 bits (419), Expect = 2e-39
Identities = 89/189 (47%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDY +FDGLL+ QV+ IA MIN+L G S+ Q R N+LMA RYA +V++V
Sbjct: 1427 CDYKSFDGLLSKQVMTVIATMINRL---CGGSQESQTMRMNLLMACCSRYAISKNEVWRV 1483
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLIS 369
CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V L+ YGDDNLIS
Sbjct: 1484 ECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLIS 1543
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 549
V+ AS FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ +
Sbjct: 1544 VSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYD 1602
Query: 550 APLDMTAIF 576
+P + ++++
Sbjct: 1603 SPEEKSSLW 1611
[23][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 165 bits (418), Expect = 2e-39
Identities = 83/184 (45%), Positives = 119/184 (64%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
NCDY FDGL+ Q++ +A MIN + + V QR N+LMA+ GR + G +V++
Sbjct: 272 NCDYKGFDGLITEQILAVVATMINAGF----RNPVSNQQRSNLLMAISGRLSICGSQVYE 327
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 381
G+PSG ALTVV+NS+FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S
Sbjct: 328 TEAGIPSGCALTVVINSIFNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQS 387
Query: 382 CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLD 561
+ F G+A++ +A V ITDG DK TI ++P EL+FLKR F K + G+I APL+
Sbjct: 388 IMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLE 447
Query: 562 MTAI 573
+I
Sbjct: 448 KLSI 451
[24][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 165 bits (418), Expect = 2e-39
Identities = 83/184 (45%), Positives = 119/184 (64%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
NCDY FDGL+ Q++ +A MIN + + V QR N+LMA+ GR + G +V++
Sbjct: 1731 NCDYKGFDGLITEQILAVVATMINAGF----RNPVSNQQRSNLLMAISGRLSICGSQVYE 1786
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 381
G+PSG ALTVV+NS+FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S
Sbjct: 1787 TEAGIPSGCALTVVINSIFNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQS 1846
Query: 382 CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLD 561
+ F G+A++ +A V ITDG DK TI ++P EL+FLKR F K + G+I APL+
Sbjct: 1847 IMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLE 1906
Query: 562 MTAI 573
+I
Sbjct: 1907 KLSI 1910
[25][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 165 bits (417), Expect = 3e-39
Identities = 89/189 (47%), Positives = 122/189 (64%), Gaps = 5/189 (2%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDY +FDGLL+ QV+ IA MIN+L G S+ Q R N+LMA RYA +V++V
Sbjct: 1427 CDYKSFDGLLSKQVMTVIATMINRL---CGGSQESQTMRMNLLMACCSRYAISKNEVWRV 1483
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLIS 369
CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V L+ YGDDNLIS
Sbjct: 1484 ECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLIS 1543
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 549
V+ A+ FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ V
Sbjct: 1544 VSHVVANVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYD 1602
Query: 550 APLDMTAIF 576
+P + ++++
Sbjct: 1603 SPEEKSSLW 1611
[26][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 162 bits (410), Expect = 2e-38
Identities = 81/184 (44%), Positives = 117/184 (63%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
NCDY FDGL+ Q++ +A MIN Y + V QR N+L+A+ GR + G +V++
Sbjct: 1733 NCDYKGFDGLITEQILAVVATMINTGY----RNPVSNQQRSNLLLAICGRLSICGNQVYE 1788
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 381
G+PSG ALTVV+NS+FNE+L+RY ++K+ P + F + V LI YGDDN+ +V+ S
Sbjct: 1789 TEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQS 1848
Query: 382 CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLD 561
F G+A++ +A V ITDG DK TI ++P EL+FLKR K + G+I APL+
Sbjct: 1849 IMESFTGDALKAEMANVGVTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLE 1908
Query: 562 MTAI 573
+I
Sbjct: 1909 KLSI 1912
[27][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 158 bits (400), Expect = 3e-37
Identities = 86/194 (44%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDYS+FDGLL+ QV++ IA+MIN+L GE +++ A+R N+LMA R A
Sbjct: 274 NDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGEDQLKNARR-NLLMACCSRLAICKN 330
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL AP+ F + + L+ YGD
Sbjct: 331 TVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGD 390
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G+ ++ +LA+ V ITDG DK + + + E DFLKR F++
Sbjct: 391 DNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRS 450
Query: 535 TGVIQAPLDMTAIF 576
+ + AP D +++
Sbjct: 451 STIWDAPEDKASLW 464
[28][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 158 bits (400), Expect = 3e-37
Identities = 86/194 (44%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDYS+FDGLL+ QV++ IA+MIN+L GE +++ A+R N+LMA R A
Sbjct: 1429 NDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGEDQLKNARR-NLLMACCSRLAICKN 1485
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL AP+ F + + L+ YGD
Sbjct: 1486 TVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGD 1545
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G+ ++ +LA+ V ITDG DK + + + E DFLKR F++
Sbjct: 1546 DNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRS 1605
Query: 535 TGVIQAPLDMTAIF 576
+ + AP D +++
Sbjct: 1606 STIWDAPEDKASLW 1619
[29][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 157 bits (397), Expect = 6e-37
Identities = 84/186 (45%), Positives = 122/186 (65%), Gaps = 2/186 (1%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDYS FDGL+ Q++ I N+ +++ SG + Q R N+LM + R + G +V++V
Sbjct: 1837 CDYSKFDGLMTPQIVHAITNIYERMF--SGNDGMSQF-RQNLLMGICNRISICGSQVYRV 1893
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSC 384
G+PSGFALTV NS+FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+
Sbjct: 1894 EAGMPSGFALTVDFNSIFNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNI 1953
Query: 385 ASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPFWELDFLKRKFLK-LDTGVIQAPL 558
S FNG AI+ + E+ +KITDG+DK +P I ++P + +FLKR + K G+ +APL
Sbjct: 1954 ESAFNGNAIKAYMKEELGIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPL 2013
Query: 559 DMTAIF 576
T+I+
Sbjct: 2014 VETSIY 2019
[30][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 156 bits (395), Expect = 1e-36
Identities = 83/186 (44%), Positives = 121/186 (65%), Gaps = 2/186 (1%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDYS FDGL+ Q++ I + +++ SG+ + Q R N+LM + R + G +V++V
Sbjct: 1836 CDYSKFDGLMTPQIVHAITGIYERMF--SGKDGMSQF-RQNLLMGICNRISICGSQVYRV 1892
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSC 384
G+PSGFALTV NS+FNEIL+R AYR L P E+ F V LIVYGDDN++ + P+
Sbjct: 1893 EAGMPSGFALTVDFNSIFNEILVRCAYRSLVPDIERPFFSNNVVLIVYGDDNVLGIHPNI 1952
Query: 385 ASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPFWELDFLKRKFLK-LDTGVIQAPL 558
S FNG I+ + E+ +KITDG+DK +P I+++P + +FLKR + K G+ +APL
Sbjct: 1953 ESVFNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPL 2012
Query: 559 DMTAIF 576
T+IF
Sbjct: 2013 VETSIF 2018
[31][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 154 bits (388), Expect = 6e-36
Identities = 81/194 (41%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGL+++QV+ CIA+ +N + G+ +++ QR N+LMA R++ V
Sbjct: 299 NSILCCDYSSFDGLMSSQVMSCIADTMNDF--MGGDVSLKR-QRKNLLMACCSRFSVVKG 355
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK----PEKCR-FQQTVCLIVYGD 354
V++V G+PSGF LTVV+N +FNE+L+RY ++K+ + P +C F + +VYGD
Sbjct: 356 NVWRVEGGIPSGFPLTVVMNGIFNELLVRYCFKKIMREGGATPLECSAFDSYIRFVVYGD 415
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV+P FNG+ ++ +A V ITDG DK PT+E +P + DFLKR F++
Sbjct: 416 DNLISVSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRS 475
Query: 535 TGVIQAPLDMTAIF 576
V AP + ++++
Sbjct: 476 ELVWDAPEERSSLY 489
[32][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 150 bits (379), Expect = 7e-35
Identities = 78/190 (41%), Positives = 117/190 (61%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ +NCDYS FDGL++ Q+ + Q + N+L+ +GR + G
Sbjct: 1705 SDTGLNCDYSKFDGLISHQISR---GWLQPSTVFLETVRKQILRVGNLLLMFIGRRSICG 1761
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 366
++V+ V G+PSG ALTVV+NS+FNEILIRY YRK+ P P F + V L+VYGDDNL+
Sbjct: 1762 RQVYMVRGGMPSGCALTVVINSIFNEILIRYVYRKVTPAPACNFFNKYVRLMVYGDDNLL 1821
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
++ +F+G I+ +A + ITDG+DK + T+E KP L+FLKR F + G++
Sbjct: 1822 TIKEEVIPFFDGPVIKREMASVGITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLV 1881
Query: 547 QAPLDMTAIF 576
APLD T+++
Sbjct: 1882 VAPLDKTSMY 1891
[33][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 149 bits (376), Expect = 2e-34
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDYS+FDGLL+ Q++E +A+MIN+ G + A+R N+LMA R A
Sbjct: 275 NDILCCDYSSFDGLLSKQIMEMMADMINRF---CGGGTLICAKRKNLLMACCSRLAISRD 331
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V+++ CG+PSGF LTV+ NS+FNEIL+RY Y+ L AP F+ + ++ YGD
Sbjct: 332 SVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGD 391
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ +A + ITDG DK + T+E + + DFLKR FLK
Sbjct: 392 DNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRS 451
Query: 535 TGVIQAPLDMTAIF 576
+ + AP + +++
Sbjct: 452 SVLWDAPEEKASLW 465
[34][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 149 bits (376), Expect = 2e-34
Identities = 79/194 (40%), Positives = 119/194 (61%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDYS+FDGLL+ Q++E +A+MIN+ G + A+R N+LMA R A
Sbjct: 1426 NDILCCDYSSFDGLLSKQIMEMMADMINRF---CGGGTLICAKRKNLLMACCSRLAISRD 1482
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V+++ CG+PSGF LTV+ NS+FNEIL+RY Y+ L AP F+ + ++ YGD
Sbjct: 1483 SVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGD 1542
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ +A + ITDG DK + T+E + + DFLKR FLK
Sbjct: 1543 DNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRS 1602
Query: 535 TGVIQAPLDMTAIF 576
+ + AP + +++
Sbjct: 1603 SVLWDAPEEKASLW 1616
[35][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 149 bits (375), Expect = 2e-34
Identities = 76/176 (43%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV++ +++MIN + G SE + +R ++LMA RYA
Sbjct: 277 NNILCCDYSSFDGLLSKQVMKAMSDMIN---SFCGGSESSKRKREHLLMACCSRYAICKN 333
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V ++VYGD
Sbjct: 334 SVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGD 393
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
DNL+SV+ +F+G+ ++ LA ++ ITDG DK +P ++ + + DFLKR F
Sbjct: 394 DNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGF 449
[36][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 149 bits (375), Expect = 2e-34
Identities = 76/176 (43%), Positives = 114/176 (64%), Gaps = 5/176 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV++ +++MIN + G SE + +R ++LMA RYA
Sbjct: 1421 NNILCCDYSSFDGLLSKQVMKAMSDMIN---SFCGGSESSKRKREHLLMACCSRYAICKN 1477
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V ++VYGD
Sbjct: 1478 SVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGD 1537
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
DNL+SV+ +F+G+ ++ LA ++ ITDG DK +P ++ + + DFLKR F
Sbjct: 1538 DNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGF 1593
[37][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 147 bits (371), Expect = 6e-34
Identities = 78/183 (42%), Positives = 117/183 (63%), Gaps = 5/183 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV+ +A+MIN G++ +++ +R N+LMA RYA
Sbjct: 76 NNVLCCDYSSFDGLLSKQVMTAMASMINSF--CGGDTSIKR-KRENLLMACCSRYAICKS 132
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K + F + V ++ YGD
Sbjct: 133 DVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGD 192
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F K
Sbjct: 193 DNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDK 252
Query: 535 TGV 543
G+
Sbjct: 253 NGI 255
[38][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 147 bits (371), Expect = 6e-34
Identities = 78/183 (42%), Positives = 117/183 (63%), Gaps = 5/183 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV+ +A+MIN G++ +++ +R N+LMA RYA
Sbjct: 1420 NNVLCCDYSSFDGLLSKQVMTAMASMINSF--CGGDTSIKR-KRENLLMACCSRYAICKS 1476
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K + F + V ++ YGD
Sbjct: 1477 DVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGD 1536
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F K
Sbjct: 1537 DNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDK 1596
Query: 535 TGV 543
G+
Sbjct: 1597 NGI 1599
[39][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 147 bits (371), Expect = 6e-34
Identities = 78/183 (42%), Positives = 117/183 (63%), Gaps = 5/183 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV+ +A+MIN G++ +++ +R N+LMA RYA
Sbjct: 1423 NNVLCCDYSSFDGLLSKQVMAAMASMINSF--CGGDTSIKR-KRENLLMACCSRYAICKS 1479
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K + F + V ++ YGD
Sbjct: 1480 DVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGD 1539
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F K
Sbjct: 1540 DNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDK 1599
Query: 535 TGV 543
G+
Sbjct: 1600 NGI 1602
[40][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 147 bits (370), Expect = 8e-34
Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++FDGL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 1415 NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 1471
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ + L VYGD
Sbjct: 1472 NVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGD 1531
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F ++
Sbjct: 1532 DNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMS 1591
Query: 535 TGVIQAPLDMTAIF 576
+ AP D +++
Sbjct: 1592 NVLWVAPEDKASLW 1605
[41][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 146 bits (369), Expect = 1e-33
Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++FDGL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 1415 NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 1471
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ + L VYGD
Sbjct: 1472 DVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGD 1531
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F ++
Sbjct: 1532 DNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMS 1591
Query: 535 TGVIQAPLDMTAIF 576
+ AP D +++
Sbjct: 1592 NVLWVAPEDKASLW 1605
[42][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 145 bits (367), Expect = 2e-33
Identities = 76/176 (43%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV++ +++MIN G SE + +R ++LMA RYA
Sbjct: 1421 NNILCCDYSSFDGLLSKQVMKAMSDMINNF---CGGSESSKRKREHLLMACCSRYAICKN 1477
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V ++VYGD
Sbjct: 1478 TVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGD 1537
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
DNL+SV+ +F+G+ ++ LA + ITDG DK +P ++ + + DFLKR F
Sbjct: 1538 DNLLSVSEVIKPYFDGKRLKDFLATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF 1593
[43][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 145 bits (366), Expect = 2e-33
Identities = 79/182 (43%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV+ +A+MIN G+S +++ +R N+LMA RYA
Sbjct: 1423 NNILCCDYSSFDGLLSKQVMAAMASMINSF--CGGDSSIKK-KRENLLMACCSRYAICKS 1479
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V ++ YGD
Sbjct: 1480 TVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGD 1539
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F K
Sbjct: 1540 DNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDR 1599
Query: 535 TG 540
+G
Sbjct: 1600 SG 1601
[44][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 145 bits (365), Expect = 3e-33
Identities = 80/194 (41%), Positives = 117/194 (60%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++FDGL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 1415 NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 1471
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ V L VYGD
Sbjct: 1472 DVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGD 1531
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ LA + ITDG DK + T++ + + DFLKR F ++
Sbjct: 1532 DNLISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMS 1591
Query: 535 TGVIQAPLDMTAIF 576
+ AP D +++
Sbjct: 1592 NVLWVAPEDKASLW 1605
[45][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 144 bits (363), Expect = 5e-33
Identities = 78/182 (42%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV+ +A+MIN G++ +++ +R N+LMA RYA
Sbjct: 275 NNILCCDYSSFDGLLSKQVMAAMASMINSF--CGGDTSIKK-KRENLLMACCSRYAICKS 331
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V ++ YGD
Sbjct: 332 TVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGD 391
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F K
Sbjct: 392 DNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDR 451
Query: 535 TG 540
+G
Sbjct: 452 SG 453
[46][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 144 bits (362), Expect = 6e-33
Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++F GL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 274 NDILCCDYASFSGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 330
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
+++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ + L VYGD
Sbjct: 331 DIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGD 390
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F ++
Sbjct: 391 DNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMS 450
Query: 535 TGVIQAPLDMTAIF 576
+ AP D +++
Sbjct: 451 NVLWVAPEDKASLW 464
[47][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 144 bits (362), Expect = 6e-33
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 5/176 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL+ QV++ +++MIN G +E + +R ++LMA RYA
Sbjct: 1421 NNILCCDYSSFDGLLSKQVMKAMSDMINNF---CGGNESSKRKREHLLMACCSRYAICKN 1477
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V ++VYGD
Sbjct: 1478 TVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGD 1537
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
DNL+SV +F+G+ ++ LA + ITDG DK +P ++ + + DFLKR F
Sbjct: 1538 DNLLSVNEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF 1593
[48][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 144 bits (362), Expect = 6e-33
Identities = 78/194 (40%), Positives = 116/194 (59%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++F GL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 1414 NDILCCDYASFSGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 1470
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
+++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ + L VYGD
Sbjct: 1471 DIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGD 1530
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F ++
Sbjct: 1531 DNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMS 1590
Query: 535 TGVIQAPLDMTAIF 576
+ AP D +++
Sbjct: 1591 NVLWVAPEDKASLW 1604
[49][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 143 bits (361), Expect = 8e-33
Identities = 79/194 (40%), Positives = 116/194 (59%), Gaps = 5/194 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++FDGL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 1415 NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 1471
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ V L VYGD
Sbjct: 1472 DVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGD 1531
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD 534
DN ISV +F+G ++ LA + ITDG DK + T++ + + DFLKR F ++
Sbjct: 1532 DNFISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMS 1591
Query: 535 TGVIQAPLDMTAIF 576
+ AP D +++
Sbjct: 1592 NVLWVAPEDKASLW 1605
[50][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 141 bits (355), Expect = 4e-32
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL QV+ ++ MIN+L G S ++Q QR N+LMA RYA
Sbjct: 273 NNILCCDYSSFDGLLTKQVMHLMSEMINEL--CGGSSRLKQ-QRTNLLMACCSRYALCKG 329
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
+V++V CG+PSGF LTV+ NS+FNE+L+RY+Y K+ P F V ++ YGD
Sbjct: 330 EVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGD 389
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLK 528
DNL+SV + F+G ++ L + ITDG DK +P + + + DFLKR F K
Sbjct: 390 DNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKK 447
[51][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 141 bits (355), Expect = 4e-32
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS+FDGLL QV+ ++ MIN+L G S ++Q QR N+LMA RYA
Sbjct: 1419 NNILCCDYSSFDGLLTKQVMHLMSEMINEL--CGGSSRLKQ-QRTNLLMACCSRYALCKG 1475
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
+V++V CG+PSGF LTV+ NS+FNE+L+RY+Y K+ P F V ++ YGD
Sbjct: 1476 EVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGD 1535
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLK 528
DNL+SV + F+G ++ L + ITDG DK +P + + + DFLKR F K
Sbjct: 1536 DNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKK 1593
[52][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 134 bits (338), Expect = 4e-30
Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ IA M + + GE+ ++ Q N+++A RYA G+
Sbjct: 274 NSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGAEREQTKNLMLACCSRYAICGR 330
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEILI+YAY K R F V ++VYGDDNL
Sbjct: 331 VLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNL 390
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
ISV+ + +S FNG + + +K+TDG DK IE + + DFLKRKF
Sbjct: 391 ISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKF 443
[53][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 134 bits (338), Expect = 4e-30
Identities = 74/173 (42%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ IA M + + GE+ ++ Q N+++A RYA G+
Sbjct: 1417 NSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGAEREQTKNLMLACCSRYAICGR 1473
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEILI+YAY K R F V ++VYGDDNL
Sbjct: 1474 VLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNL 1533
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
ISV+ + +S FNG + + +K+TDG DK IE + + DFLKRKF
Sbjct: 1534 ISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKF 1586
[54][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 132 bits (332), Expect = 2e-29
Identities = 75/173 (43%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ IA M + + +GES + Q N+++A RYA G+
Sbjct: 1417 NSILCCDYSRFDGFLPKCIMVKIAEMFSNVVGETGES---REQTKNLMLACCSRYAICGR 1473
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEILI+YAY K R F V + VYGDDNL
Sbjct: 1474 VLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTHVAMAVYGDDNL 1533
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
ISV+ + +S FNG + +A +K+TDG DK IE + DFLKR+F
Sbjct: 1534 ISVSEAISSRFNGNFLVNFMANLGIKVTDGVDKTKIGIEFRTIENCDFLKRRF 1586
[55][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 130 bits (327), Expect = 7e-29
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I +I + G+++ + Q N+L+A GRYA +
Sbjct: 238 NNILCCDYSRFDGFLPKCIMLKIGQLIG---SFMGKNDEEVTQICNLLLACTGRYAICEK 294
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAYR R F V L+VYGDDNL
Sbjct: 295 LLYRVENGIPSGFPLTVIVNSILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNL 354
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S FNGE + + +TDG DK I + + DFLKR F L G
Sbjct: 355 ISVSDAISSKFNGEFLVDFFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGE 414
Query: 544 IQAPLDMTAIF 576
P+ +++
Sbjct: 415 WVGPMSRESLW 425
[56][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 130 bits (327), Expect = 7e-29
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I +I + G+++ + Q N+L+A GRYA +
Sbjct: 1423 NNILCCDYSRFDGFLPKCIMLKIGQLIG---SFMGKNDEEVTQICNLLLACTGRYAICEK 1479
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAYR R F V L+VYGDDNL
Sbjct: 1480 LLYRVENGIPSGFPLTVIVNSILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNL 1539
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S FNGE + + +TDG DK I + + DFLKR F L G
Sbjct: 1540 ISVSDAISSKFNGEFLVDFFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGE 1599
Query: 544 IQAPLDMTAIF 576
P+ +++
Sbjct: 1600 WVGPMSRESLW 1610
[57][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 130 bits (326), Expect = 1e-28
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L + EV +AQ N+++A RYA +
Sbjct: 1445 NNILCCDYSRFDGFLPKCIMNEIGNMIARLMKVD---EVSRAQIKNLMLACTSRYAMCNR 1501
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 1502 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNL 1561
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1562 ISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGT 1621
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 1622 WRSPMSKESLW 1632
[58][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 129 bits (325), Expect = 1e-28
Identities = 74/191 (38%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L + EV +AQ N+++A RYA +
Sbjct: 50 NNILCCDYSRFDGFLPKCIMNEIGNMIARLMKVD---EVSKAQIKNLMLACTSRYAMCNR 106
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 107 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNL 166
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 167 ISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGT 226
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 227 WRSPMSKESLW 237
[59][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 128 bits (322), Expect = 3e-28
Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L + EV + Q N+++A RYA +
Sbjct: 274 NNILCCDYSRFDGFLPKCIMNEIGNMIARLMRVD---EVSRTQIKNLMLACTSRYAMCNR 330
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 331 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNL 390
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 391 ISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGT 450
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 451 WRSPMSKESLW 461
[60][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 128 bits (322), Expect = 3e-28
Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L + EV + Q N+++A RYA +
Sbjct: 1445 NNILCCDYSRFDGFLPKCIMNEIGNMIARLMRVD---EVSRTQIKNLMLACTSRYAMCNR 1501
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 1502 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNL 1561
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1562 ISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGT 1621
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 1622 WRSPMSKESLW 1632
[61][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 128 bits (322), Expect = 3e-28
Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L + EV + Q N+++A RYA +
Sbjct: 169 NNILCCDYSRFDGFLPKCIMNEIGNMIARLLKVD---EVSRTQIKNLMLACTSRYAMCNR 225
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 226 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFGDNPSVQSNFDAHVSMVVYGDDNL 285
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 286 ISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGT 345
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 346 WRSPMSKESLW 356
[62][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 127 bits (320), Expect = 5e-28
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L EV + Q N+++A RYA +
Sbjct: 1445 NNILCCDYSRFDGFLPKCIMNEIGNMIARLMKTD---EVSRTQIKNLMLACTSRYAMCNR 1501
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 1502 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNL 1561
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1562 ISVSDAISSRFDGNFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGT 1621
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 1622 WRSPMSKESLW 1632
[63][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 127 bits (318), Expect = 8e-28
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I +MI KL EV + Q N+++A RYA +
Sbjct: 1344 NNILCCDYSRFDGFLPKCIMNEIGDMIAKLMKAD---EVSKTQIKNLMLACTSRYAMCNR 1400
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 1401 VLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPNVQSNFDAHVSMVVYGDDNL 1460
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1461 ISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGT 1520
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 1521 WRSPMSKESLW 1531
[64][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 126 bits (317), Expect = 1e-27
Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L V+ I MI ++ S ES Q N+++A RYA +
Sbjct: 272 NNVLCCDYSRFDGFLPKCVMNEIGEMIARVMRASDESRTQIK---NLMLACTSRYAMCNR 328
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTVVVNS+ NEIL++YAY A P + F V ++VYGDDNL
Sbjct: 329 ILYRVENGIPSGFPLTVVVNSILNEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNL 388
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 389 ISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGT 448
Query: 544 IQAPLDMTAIF 576
+ P+ +++
Sbjct: 449 WRCPMSKESLW 459
[65][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 126 bits (317), Expect = 1e-27
Identities = 75/191 (39%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L V+ I MI ++ S ES Q N+++A RYA +
Sbjct: 1444 NNVLCCDYSRFDGFLPKCVMNEIGEMIARVMRASDESRTQIK---NLMLACTSRYAMCNR 1500
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTVVVNS+ NEIL++YAY A P + F V ++VYGDDNL
Sbjct: 1501 ILYRVENGIPSGFPLTVVVNSILNEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNL 1560
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1561 ISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGT 1620
Query: 544 IQAPLDMTAIF 576
+ P+ +++
Sbjct: 1621 WRCPMSKESLW 1631
[66][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 126 bits (317), Expect = 1e-27
Identities = 74/191 (38%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I ++I + E+EV+Q N+L+A GRYA +
Sbjct: 1423 NNILCCDYSRFDGFLPKCIMSQIGHLIGT-FMKKDEAEVEQI--CNLLLACSGRYAICEK 1479
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YA+R R F V L+VYGDDNL
Sbjct: 1480 LLYRVENGIPSGFPLTVIVNSILNEILVKYAFRMCFADNPMVRESFDTHVSLVVYGDDNL 1539
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + ++ FNGE + + + +TDG DK I + + DFLKR F L G
Sbjct: 1540 ISVSDAISAKFNGEFLVDFFLKLSITVTDGVDKTKKGISFRRLADCDFLKRGFKNLPDGE 1599
Query: 544 IQAPLDMTAIF 576
P+ +++
Sbjct: 1600 WIGPMSRESLW 1610
[67][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 125 bits (313), Expect = 3e-27
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = +1
Query: 220 SGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFN 399
SGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF
Sbjct: 1 SGFALTVVVNSVFNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFT 60
Query: 400 GEAIRVTLAEKK 435
GEAIR+TLAEKK
Sbjct: 61 GEAIRITLAEKK 72
[68][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 123 bits (309), Expect = 9e-27
Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L V+ I +MI ++ + ES+ Q N+++A RYA +
Sbjct: 1444 NNILCCDYSRFDGFLPKCVMNEIGDMIARVMRANDESKTQIK---NLMLACTSRYAMCNR 1500
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKP-EKCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++VYGDDNL
Sbjct: 1501 ILYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFVDNPIVQSNFDAHVSMVVYGDDNL 1560
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1561 ISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKLNPDGT 1620
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 1621 WRSPMSKESLW 1631
[69][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 122 bits (306), Expect = 2e-26
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 2/191 (1%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N + CDYS FDG L ++ I NMI +L + EV +AQ N+++A RYA +
Sbjct: 1445 NNILCCDYSRFDGFLPKCIMNEIGNMIARLMKVD---EVSKAQIKNLMLACTSRYAMCNR 1501
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNL 363
+++V G+PSGF LTV+ NS+ NEIL++YAY P + F V + YGDDNL
Sbjct: 1502 VLYRVENGIPSGFPLTVIGNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMEEYGDDNL 1561
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGV 543
ISV+ + +S F+G + + +K+TDG DK IE + DFLKR F G
Sbjct: 1562 ISVSDAISSKFDGSFLVSFIEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGT 1621
Query: 544 IQAPLDMTAIF 576
++P+ +++
Sbjct: 1622 WRSPMSKESLW 1632
[70][TOP]
>UniRef100_A5A4Z3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cowpea mosaic virus
RepID=A5A4Z3_CPMV
Length = 203
Score = 117 bits (294), Expect = 5e-25
Identities = 62/124 (50%), Positives = 87/124 (70%), Gaps = 5/124 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDYS+FDGLL+ QV++ IA+MIN+L GE +++ A+R N+LMA R A
Sbjct: 83 NDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGEDQLKNARR-NLLMACCSRLAICKN 139
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL AP+ F + + L+ YGD
Sbjct: 140 TVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLMGLVTYGD 199
Query: 355 DNLI 366
DNL+
Sbjct: 200 DNLV 203
[71][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 113 bits (282), Expect = 1e-23
Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 11/201 (5%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVG--RYA 177
GTN N D+ FDG+ V+ + INKLY G+++ A + L+ L+ RYA
Sbjct: 372 GTNW-FNGDFERFDGITPRDVMVQLVIRINKLYK-RGDADRPLANKVRSLLMLMASDRYA 429
Query: 178 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP------EKCRFQQTVCL 339
G+ ++KV+CG+PSGF+LTV+VNS+ NE +R+A++++ + + V
Sbjct: 430 IAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVHF 489
Query: 340 IVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDG---SDKDAPTIESKPFWELDFL 510
VYGDDNL+SV+ +S +N +I L E+ V + +G ++D P P DFL
Sbjct: 490 AVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFL 548
Query: 511 KRKFLKLDTGVIQAPLDMTAI 573
KR+F+ +G + APLD +++
Sbjct: 549 KRRFVLGSSGRVLAPLDKSSL 569
[72][TOP]
>UniRef100_Q20LA1 Polyprotein 1 (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q20LA1_9SECO
Length = 533
Score = 112 bits (280), Expect = 2e-23
Identities = 54/119 (45%), Positives = 79/119 (66%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDYS FDGL+ Q++ I + +++ SG+ + Q R N++M + R + G +V++V
Sbjct: 416 CDYSKFDGLMTPQIVHAITGIYERMF--SGKDGMSQF-RQNLMMGICNRISICGSQVYRV 472
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 381
G+PSGFALTV NS+FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+
Sbjct: 473 EAGMPSGFALTVDFNSIFNEILVRCAYRSLVPEIERPFFSNNVALIVYGDDNVMGIHPN 531
[73][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 111 bits (277), Expect = 5e-23
Identities = 53/68 (77%), Positives = 61/68 (89%)
Frame = +1
Query: 259 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 438
+EILIRYAY+KLAPKP++ F +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+
Sbjct: 9 HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68
Query: 439 KITDGSDK 462
KITDGSDK
Sbjct: 69 KITDGSDK 76
[74][TOP]
>UniRef100_Q6A2S5 Polyprotein (Fragment) n=1 Tax=Potato black ringspot virus
RepID=Q6A2S5_9SECO
Length = 252
Score = 110 bits (274), Expect = 1e-22
Identities = 59/119 (49%), Positives = 77/119 (64%), Gaps = 9/119 (7%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALS-----GESEVQ----QAQRYNMLMALVG 168
A NCDYS FDGL++ QV++ I M+NK YA + G EV Q R+N+LM++ G
Sbjct: 134 AYNCDYSKFDGLMSCQVLDAIGKMVNKCYANTNPNKKGRGEVPGSPPQLARHNLLMSIFG 193
Query: 169 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 345
R +VF+V G+PSG ALTV++NSVFNEILIRY Y+ + P PE RF+ V L V
Sbjct: 194 RKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIRYVYKTVVPSPEFNRFETFVTLAV 252
[75][TOP]
>UniRef100_Q6A1M5 Polyprotein (Fragment) n=1 Tax=Tobacco ringspot virus
RepID=Q6A1M5_TRSV
Length = 254
Score = 108 bits (270), Expect = 3e-22
Identities = 57/121 (47%), Positives = 79/121 (65%), Gaps = 11/121 (9%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALS-------GESEVQ----QAQRYNMLMAL 162
A NCDYS FDGL++ QV++ I M+NK Y+ + G+ E+ Q R+N+LM++
Sbjct: 134 AYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNLKKKGKGELPGSPPQLARHNLLMSI 193
Query: 163 VGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLI 342
GR +VF+V G+PSG ALTV++NSVFNEILIRY Y+ + P PE RF+ V L+
Sbjct: 194 FGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIRYVYKTVIPSPEFNRFETFVTLV 253
Query: 343 V 345
V
Sbjct: 254 V 254
[76][TOP]
>UniRef100_Q6A1M4 Polyprotein (Fragment) n=1 Tax=Squash mosaic virus
RepID=Q6A1M4_9SECO
Length = 243
Score = 106 bits (265), Expect = 1e-21
Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 5/111 (4%)
Frame = +1
Query: 25 CDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
CDY +FDGLL+ QV+ IA MIN+L G S+ Q R N+LMA RYA +V++V
Sbjct: 135 CDYKSFDGLLSKQVMTVIATMINRL---CGGSQESQTMRMNLLMACCSRYAISKNEVWRV 191
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLI 342
CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V L+
Sbjct: 192 ECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLV 242
[77][TOP]
>UniRef100_A5A4Z4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Bean pod mottle
virus RepID=A5A4Z4_9SECO
Length = 197
Score = 106 bits (265), Expect = 1e-21
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 5/124 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ + CDY++FDGL+ QV+ +A MIN +L G E +R ++L+A R A +
Sbjct: 77 NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKLMRERTHLLLACCSRMAICKK 133
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGD 354
V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ V L VYGD
Sbjct: 134 DVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGD 193
Query: 355 DNLI 366
DNL+
Sbjct: 194 DNLV 197
[78][TOP]
>UniRef100_Q1XEP0 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEP0_9SECO
Length = 239
Score = 104 bits (260), Expect = 4e-21
Identities = 49/113 (43%), Positives = 75/113 (66%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
+ A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+ + R N+LMA+ R + G
Sbjct: 130 SENALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQKSKNGRKNLLMAICNRKSLCG 186
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 345
++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+V
Sbjct: 187 ADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLV 239
[79][TOP]
>UniRef100_Q1XEN9 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEN9_9SECO
Length = 239
Score = 104 bits (260), Expect = 4e-21
Identities = 49/113 (43%), Positives = 75/113 (66%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
+ A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+ + R N+LMA+ R + G
Sbjct: 130 SENALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQKSKNGRKNLLMAICNRKSLCG 186
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 345
++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+V
Sbjct: 187 ADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLV 239
[80][TOP]
>UniRef100_Q1XEN8 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEN8_9SECO
Length = 239
Score = 104 bits (260), Expect = 4e-21
Identities = 49/113 (43%), Positives = 75/113 (66%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
+ A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+ + R N+LMA+ R + G
Sbjct: 130 SENALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQKSKNGRKNLLMAICNRKSLCG 186
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 345
++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+V
Sbjct: 187 ADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLV 239
[81][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
Length = 2235
Score = 98.2 bits (243), Expect = 4e-19
Identities = 71/201 (35%), Positives = 99/201 (49%), Gaps = 15/201 (7%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQ-------RYNMLMAL 162
GTN N DYS FDG+ V++ I INK Y + + ++LM +
Sbjct: 1798 GTNW-FNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDM 1856
Query: 163 VG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE------KCRF 321
RY ++ V G+PSGF LTV+VNS+ N I ++Y KL + E F
Sbjct: 1857 ASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSF 1916
Query: 322 QQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KPFWE 498
+Q V YGDDNL+SV FN I LAE V + +G+DK+ + P +
Sbjct: 1917 RQMVAYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEK 1976
Query: 499 LDFLKRKFLKLDTGVIQAPLD 561
+DFLKRKF+ G + APL+
Sbjct: 1977 VDFLKRKFVHYQ-GHVVAPLN 1996
[82][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
RepID=UPI000043F357
Length = 707
Score = 97.4 bits (241), Expect = 7e-19
Identities = 73/204 (35%), Positives = 101/204 (49%), Gaps = 18/204 (8%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYA-----------LSGESEVQQAQRYNM 150
GTN N DYS FDG+ V++ I INK Y LS S++ ++ +M
Sbjct: 270 GTNW-FNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDM 328
Query: 151 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE------K 312
RY ++ V G+PSGF LTV+VNS+ N I ++Y KL + E
Sbjct: 329 AST---RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPL 385
Query: 313 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KP 489
F+Q V YGDDNL+SV FN I LAE V + +G+DK+ + P
Sbjct: 386 HSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYP 445
Query: 490 FWELDFLKRKFLKLDTGVIQAPLD 561
++DFLKRKF+ G + APL+
Sbjct: 446 LEKVDFLKRKFVHYQ-GHVVAPLN 468
[83][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
Length = 2250
Score = 97.4 bits (241), Expect = 7e-19
Identities = 73/204 (35%), Positives = 101/204 (49%), Gaps = 18/204 (8%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYA-----------LSGESEVQQAQRYNM 150
GTN N DYS FDG+ V++ I INK Y LS S++ ++ +M
Sbjct: 1813 GTNW-FNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDM 1871
Query: 151 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE------K 312
RY ++ V G+PSGF LTV+VNS+ N I ++Y KL + E
Sbjct: 1872 AST---RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPL 1928
Query: 313 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KP 489
F+Q V YGDDNL+SV FN I LAE V + +G+DK+ + P
Sbjct: 1929 HSFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYP 1988
Query: 490 FWELDFLKRKFLKLDTGVIQAPLD 561
++DFLKRKF+ G + APL+
Sbjct: 1989 LEKVDFLKRKFVHYQ-GHVVAPLN 2011
[84][TOP]
>UniRef100_Q6A1Z2 Polyprotein (Fragment) n=1 Tax=Arabis mosaic virus
RepID=Q6A1Z2_ARMV
Length = 236
Score = 96.3 bits (238), Expect = 2e-18
Identities = 46/107 (42%), Positives = 68/107 (63%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
NCDY FDGL+ Q++ A MIN Y + V QR N+L+A+ GR + G +V++
Sbjct: 133 NCDYKGFDGLITEQILAVAATMINTGY----RNPVGNQQRSNLLLAICGRLSICGNQVYE 188
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLI 342
G+PSG ALTVV+NS+FNE+L+RY ++K+ P + F + V L+
Sbjct: 189 TEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYRECFDRCVVLV 235
[85][TOP]
>UniRef100_Q6A2S6 Polyprotein (Fragment) n=1 Tax=Cherry leaf roll virus
RepID=Q6A2S6_9SECO
Length = 240
Score = 95.5 bits (236), Expect = 3e-18
Identities = 48/111 (43%), Positives = 73/111 (65%)
Frame = +1
Query: 13 EAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQK 192
+A+N DY +FDG LN Q+ + IA ++ +++ S+ RYN++MA+ RY+ G +
Sbjct: 134 KALNGDYKSFDGKLNFQMYDAIARLLGRVHRDESTSQA----RYNLIMAMYARYSLCGSQ 189
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 345
V++V GLPSG A+TV+++S+FNEILIRYAYR + RF V L+V
Sbjct: 190 VYEVRAGLPSGCAITVIMDSIFNEILIRYAYRVSVGPILRNRFNHFVKLVV 240
[86][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling virus
RepID=Q9YZ97_SDV
Length = 872
Score = 95.1 bits (235), Expect = 3e-18
Identities = 66/190 (34%), Positives = 102/190 (53%), Gaps = 8/190 (4%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FD ++ I + IN+L +G+SE+ Q R N++ ++ RY V++++
Sbjct: 475 DYSGFDTSTPRILVYAIVDKINEL---AGDSEMNQRTRRNIIRFVLNRYLISDGYVYEIH 531
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLIS 369
G PSGFA TV++NS+ NE +++++ L A + F + + +YGDDN +S
Sbjct: 532 GGTPSGFAPTVMINSIVNEFYLKWSWMGLMKEAGYAKEASLYAFHEATEISLYGDDNFVS 591
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTG--V 543
VA AS +N + I L VK+ DG+ K T P E+DFLKR+F+ D G
Sbjct: 592 VATPVASLYNLKTISEFLRRIGVKLGDGA-KTGITKPFIPLEEVDFLKRQFV-ADAGSTA 649
Query: 544 IQAPLDMTAI 573
I PL +I
Sbjct: 650 ILCPLKKISI 659
[87][TOP]
>UniRef100_UPI00004FF342 polymerase n=1 Tax=Strawberry latent ringspot virus
RepID=UPI00004FF342
Length = 675
Score = 94.4 bits (233), Expect = 6e-18
Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 183
GTN N DYS FDG+ ++ I+N I KLY + + +R ++++A R
Sbjct: 273 GTNW-FNGDYSRFDGVTPRCLLIEISNRITKLYG-----DEHRERRLHLMLAATTRLGVA 326
Query: 184 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNL 363
G +++V+ G+P GFALTV+VNS+ N L+R+++ + F V L V GDDNL
Sbjct: 327 GIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS-SSLFFTDCVELAVVGDDNL 385
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI-ESKPFWELDFLKRKF 522
+SV A FN + + LA + DGSDK+ + E P + DFLKR F
Sbjct: 386 VSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF 439
[88][TOP]
>UniRef100_Q5G2U4 250 kDa polyprotein n=1 Tax=Strawberry latent ringspot virus
RepID=Q5G2U4_9SECO
Length = 2227
Score = 94.4 bits (233), Expect = 6e-18
Identities = 64/174 (36%), Positives = 94/174 (54%), Gaps = 1/174 (0%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 183
GTN N DYS FDG+ ++ I+N I KLY + + +R ++++A R
Sbjct: 1825 GTNW-FNGDYSRFDGVTPRCLLIEISNRITKLYG-----DEHRERRLHLMLAATTRLGVA 1878
Query: 184 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNL 363
G +++V+ G+P GFALTV+VNS+ N L+R+++ + F V L V GDDNL
Sbjct: 1879 GIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS-SSLFFTDCVELAVVGDDNL 1937
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI-ESKPFWELDFLKRKF 522
+SV A FN + + LA + DGSDK+ + E P + DFLKR F
Sbjct: 1938 VSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF 1991
[89][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 94.0 bits (232), Expect = 8e-18
Identities = 72/205 (35%), Positives = 101/205 (49%), Gaps = 15/205 (7%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQ-------RYNMLMAL 162
GTN N DYS FDG+ V++ I I++ YA + ++LM +
Sbjct: 270 GTNW-FNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDM 328
Query: 163 VG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-APKPEKC-----RF 321
RY ++ V G+PSGF LTV+VNS+ N + +AY KL + + K F
Sbjct: 329 CSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSF 388
Query: 322 QQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KPFWE 498
+ V VYGDDNLISV + FN I L E V + +G+DK+ + P +
Sbjct: 389 RTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEK 448
Query: 499 LDFLKRKFLKLDTGVIQAPLDMTAI 573
+DFLKR+F L G I APL+ I
Sbjct: 449 VDFLKRRFTTLQ-GHIVAPLNTVNI 472
[90][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 94.0 bits (232), Expect = 8e-18
Identities = 72/205 (35%), Positives = 101/205 (49%), Gaps = 15/205 (7%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQ-------RYNMLMAL 162
GTN N DYS FDG+ V++ I I++ YA + ++LM +
Sbjct: 1640 GTNW-FNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDM 1698
Query: 163 VG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-APKPEKC-----RF 321
RY ++ V G+PSGF LTV+VNS+ N + +AY KL + + K F
Sbjct: 1699 CSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSF 1758
Query: 322 QQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KPFWE 498
+ V VYGDDNLISV + FN I L E V + +G+DK+ + P +
Sbjct: 1759 RTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEK 1818
Query: 499 LDFLKRKFLKLDTGVIQAPLDMTAI 573
+DFLKR+F L G I APL+ I
Sbjct: 1819 VDFLKRRFTTLQ-GHIVAPLNTVNI 1842
[91][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 93.6 bits (231), Expect = 1e-17
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ + DYS+FDG + ++++ Y S A R+ +LM Y
Sbjct: 1375 SDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPDSNA-RHVLLMMASCHYTICE 1433
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLI 342
KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K + +
Sbjct: 1434 NKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVA 1493
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESK--PFWELDFLKR 516
VYGDDNL++V P W+ AI L V I +G DK+ SK EL FL R
Sbjct: 1494 VYGDDNLVAV-PMELQWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSR 1552
Query: 517 KFLKLDTGVIQAPLDMTAI 573
F + G +QAPL +I
Sbjct: 1553 GFKRHRLGYVQAPLKWVSI 1571
[92][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 93.2 bits (230), Expect = 1e-17
Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ + DYS+FDG + ++++ Y S A R+ +LM Y
Sbjct: 1375 SDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPDSNA-RHVLLMMASCHYTICE 1433
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLI 342
KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K + +
Sbjct: 1434 NKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVA 1493
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESK--PFWELDFLKR 516
VYGDDNL++V P W+ AI L V I +G DK+ SK EL FL R
Sbjct: 1494 VYGDDNLVAV-PMELHWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSR 1552
Query: 517 KFLKLDTGVIQAPLDMTAI 573
F + G +QAPL +I
Sbjct: 1553 GFKRHRLGYVQAPLKWVSI 1571
[93][TOP]
>UniRef100_UPI0000163D77 RNA-dependent RNA polymerase n=1 Tax=Rice tungro spherical virus
RepID=UPI0000163D77
Length = 621
Score = 92.4 bits (228), Expect = 2e-17
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + + I N++N Y + EV R++++ ++V R G + + +
Sbjct: 309 DYSKFDGIGSPAIYHSIVNVVNAWY---NDGEVNARARHSLISSIVHRDGICGDLILRYS 365
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTVCLIV-YGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L C+ T C IV YGDDN++S
Sbjct: 366 QGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVS 425
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
V +N + + L+ V TDG DK+ P SKP+ ++ FLKR F ++++
Sbjct: 426 VHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKMSFLKRGFERVESS 483
Query: 541 --VIQAPLDMTAI 573
+ +APLD T+I
Sbjct: 484 GFLWKAPLDKTSI 496
[94][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 92.4 bits (228), Expect = 2e-17
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 10/199 (5%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
+N + DYS+FDG + + ++++ Y + S A R+ +LM Y
Sbjct: 1378 SNIGFSADYSSFDGRAPVFIFQWFCDLVDDYYGSATGSPESNA-RHALLMMASCHYTLCE 1436
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLI 342
KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K + +
Sbjct: 1437 DKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVA 1496
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIESKPFWELDFLKR 516
VYGDDNL++V P W++ I L V I +G DK D ++ + EL FL R
Sbjct: 1497 VYGDDNLVAV-PLHLQWYSLPNIAQELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSR 1555
Query: 517 KFLKLDTGVIQAPLDMTAI 573
F + G APL +I
Sbjct: 1556 GFKRHALGYHMAPLKWVSI 1574
[95][TOP]
>UniRef100_Q83034 Probable RNA-directed RNA polymerase n=2 Tax=Rice tungro spherical
virus RepID=POLG_RTSVA
Length = 3473
Score = 92.4 bits (228), Expect = 2e-17
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + + I N++N Y + EV R++++ ++V R G + + +
Sbjct: 3161 DYSKFDGIGSPAIYHSIVNVVNAWY---NDGEVNARARHSLISSIVHRDGICGDLILRYS 3217
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTVCLIV-YGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L C+ T C IV YGDDN++S
Sbjct: 3218 QGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVS 3277
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
V +N + + L+ V TDG DK+ P SKP+ ++ FLKR F ++++
Sbjct: 3278 VHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKMSFLKRGFERVESS 3335
Query: 541 --VIQAPLDMTAI 573
+ +APLD T+I
Sbjct: 3336 GFLWKAPLDKTSI 3348
[96][TOP]
>UniRef100_Q98645 ORF1 protein (Fragment) n=1 Tax=Rice tungro spherical virus
RepID=Q98645_9SECO
Length = 1619
Score = 92.0 bits (227), Expect = 3e-17
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + + I N++N Y + EV R++++ ++V R G + + +
Sbjct: 1306 DYSKFDGIGSPAIYHSIVNVVNAWY---DDGEVNARARHSLISSIVHRDGICGDLILRYS 1362
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTVCLIV-YGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L C+ T C IV YGDDN++S
Sbjct: 1363 QGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVS 1422
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
V +N + + L+ V TDG DK+ P SKP+ ++ FLKR F ++++
Sbjct: 1423 VHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKMSFLKRGFERVESS 1480
Query: 541 --VIQAPLDMTAI 573
+ +APLD T+I
Sbjct: 1481 GFLWKAPLDKTSI 1493
[97][TOP]
>UniRef100_Q91PP5 Probable RNA-directed RNA polymerase n=1 Tax=Rice tungro spherical
virus (isolate Vt6) RepID=POLG_RTSVT
Length = 3471
Score = 92.0 bits (227), Expect = 3e-17
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + + I N++N Y + EV R++++ ++V R G + + +
Sbjct: 3158 DYSKFDGIGSPAIYHSIVNVVNAWY---DDGEVNARARHSLISSIVHRDGICGDLILRYS 3214
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTVCLIV-YGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L C+ T C IV YGDDN++S
Sbjct: 3215 QGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVS 3274
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
V +N + + L+ V TDG DK+ P SKP+ ++ FLKR F ++++
Sbjct: 3275 VHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKMSFLKRGFERVESS 3332
Query: 541 --VIQAPLDMTAI 573
+ +APLD T+I
Sbjct: 3333 GFLWKAPLDKTSI 3345
[98][TOP]
>UniRef100_Q1MNG5 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG5_9SECO
Length = 3471
Score = 90.1 bits (222), Expect = 1e-16
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + + I N+++ Y + EV R++++ ++V R G + + +
Sbjct: 3158 DYSKFDGIGSPAIYHSIVNVVDAWY---DDGEVNARARHSLISSIVHRDGICGDLILRYS 3214
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTVCLIV-YGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L C+ T C IV YGDDN++S
Sbjct: 3215 QGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVS 3274
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
V +N + + L+ V TDG DK+ P SKP+ ++ FLKR F ++++
Sbjct: 3275 VHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKMSFLKRGFERVESS 3332
Query: 541 --VIQAPLDMTAI 573
+ +APLD T+I
Sbjct: 3333 GFLWKAPLDKTSI 3345
[99][TOP]
>UniRef100_Q1MNG4 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG4_9SECO
Length = 3471
Score = 90.1 bits (222), Expect = 1e-16
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + + I N+++ Y + EV R++++ ++V R G + + +
Sbjct: 3158 DYSKFDGIGSPAIYHSIVNVVDAWY---DDGEVNARARHSLISSIVHRDGICGDLILRYS 3214
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTVCLIV-YGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L C+ T C IV YGDDN++S
Sbjct: 3215 QGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTYCKIVAYGDDNVVS 3274
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
V +N + + L+ V TDG DK+ P SKP+ ++ FLKR F ++++
Sbjct: 3275 VHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKMSFLKRGFERVESS 3332
Query: 541 --VIQAPLDMTAI 573
+ +APLD T+I
Sbjct: 3333 GFLWKAPLDKTSI 3345
[100][TOP]
>UniRef100_UPI0000163DC1 RNA-dependent RNA polymerase n=1 Tax=Maize chlorotic dwarf virus
RepID=UPI0000163DC1
Length = 612
Score = 89.7 bits (221), Expect = 1e-16
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + Q+ I ++N Y + E R+ ++ +++ R V + +F+
Sbjct: 298 DYSKFDGIGDPQIYHSITQVVNNWY---DDGEENARTRHALISSIIHREGIVKEYLFQYC 354
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQTVCLIVYGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L+P+ F ++VYGDDN++S
Sbjct: 355 QGMPSGFAMTVIFNSFVNYYYLAMAWMNLISHSPLSPQSTVRDFDNYCKVVVYGDDNIVS 414
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWEL---DFLKRKFLKLD-- 534
V + ++N + L++ V TD D P +S PF E+ FLKR+++ L
Sbjct: 415 VDLNFLEYYNLRTVAAYLSQFGVTYTD--DAKNPIEKSVPFVEITSVSFLKRRWVPLGGR 472
Query: 535 -TGVIQAPLDMTAI 573
+ + +APLD T+I
Sbjct: 473 LSTIYKAPLDKTSI 486
[101][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
RepID=Q769F2_SDV
Length = 374
Score = 89.7 bits (221), Expect = 1e-16
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Frame = +1
Query: 106 LSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 285
L+ +SEV Q R N++ ++ RY +++++ G PSGFA TV++NSV NE +++++
Sbjct: 1 LADDSEVYQRTRRNIIRFILNRYLISDGVLYEIHGGTPSGFAPTVMLNSVVNEFYLKWSW 60
Query: 286 RKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKIT 447
+ A + C F + + VYGDDN +SVA AS +N + I L+ VK+
Sbjct: 61 MGIMREAGYAKEASLCAFHEATEISVYGDDNFVSVATPVASLYNLKTISEFLSRVGVKLG 120
Query: 448 DGSDKDAPTIESKPFWELDFLKRKFL 525
DG+ K P E+DFLKRKF+
Sbjct: 121 DGA-KSGTIKPFIPLEEVDFLKRKFV 145
[102][TOP]
>UniRef100_O11979 Polyprotein n=2 Tax=Maize chlorotic dwarf virus RepID=O11979_9SECO
Length = 3443
Score = 89.7 bits (221), Expect = 1e-16
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + Q+ I ++N Y + E R+ ++ +++ R V + +F+
Sbjct: 3129 DYSKFDGIGDPQIYHSITQVVNNWY---DDGEENARTRHALISSIIHREGIVKEYLFQYC 3185
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQTVCLIVYGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L+P+ F ++VYGDDN++S
Sbjct: 3186 QGMPSGFAMTVIFNSFVNYYYLAMAWMNLISHSPLSPQSTVRDFDNYCKVVVYGDDNIVS 3245
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWEL---DFLKRKFLKLD-- 534
V + ++N + L++ V TD D P +S PF E+ FLKR+++ L
Sbjct: 3246 VDLNFLEYYNLRTVAAYLSQFGVTYTD--DAKNPIEKSVPFVEITSVSFLKRRWVPLGGR 3303
Query: 535 -TGVIQAPLDMTAI 573
+ + +APLD T+I
Sbjct: 3304 LSTIYKAPLDKTSI 3317
[103][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
Length = 2151
Score = 89.4 bits (220), Expect = 2e-16
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
+ DYS+FDG + +++++ Y S A R+ +LM Y KVF+
Sbjct: 1381 SADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPDSNA-RHALLMMASCHYTLCEDKVFR 1439
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGD 354
+ G+PSGFALTV+ NS+ NE +RYA+ L +P + F Q + + VYGD
Sbjct: 1440 LVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGD 1498
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIESKPFWELDFLKRKFLK 528
DNL++V P W++ I L V I +G DK D ++ + EL FL R F +
Sbjct: 1499 DNLVAV-PLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKR 1557
Query: 529 LDTGVIQAPLDMTAI 573
G APL +I
Sbjct: 1558 HALGYHMAPLKWVSI 1572
[104][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
RepID=A0N0G3_9VIRU
Length = 1943
Score = 89.4 bits (220), Expect = 2e-16
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 11/195 (5%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
+ DYS+FDG + +++++ Y S A R+ +LM Y KVF+
Sbjct: 1173 SADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPDSNA-RHALLMMASCHYTLCEDKVFR 1231
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGD 354
+ G+PSGFALTV+ NS+ NE +RYA+ L +P + F Q + + VYGD
Sbjct: 1232 LVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGD 1290
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIESKPFWELDFLKRKFLK 528
DNL++V P W++ I L V I +G DK D ++ + EL FL R F +
Sbjct: 1291 DNLVAV-PLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKR 1349
Query: 529 LDTGVIQAPLDMTAI 573
G APL +I
Sbjct: 1350 HALGYHMAPLKWVSI 1364
[105][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
RepID=UPI0000164A59
Length = 682
Score = 87.8 bits (216), Expect = 5e-16
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FD ++ I + IN+L + + EV Q R N++ ++ RY +++++
Sbjct: 286 DYSGFDTSTPRVLVYAIIDKINEL---ADDGEVNQRTRRNIIRFVLNRYLISDGVLYEIH 342
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLIS 369
G PSGFA TV++NSV NE +++++ L A + F + + +YGDDN +S
Sbjct: 343 GGTPSGFAPTVMINSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVS 402
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
VA AS +N I L VK+ DG A T KPF E+DFLKR+F+ D+G
Sbjct: 403 VATPVASVYNLTTISNFLGRIGVKLGDG----AKTGTIKPFIPLEEVDFLKRQFV-ADSG 457
Query: 541 --VIQAPLDMTAI 573
I PL +I
Sbjct: 458 STAILCPLKKISI 470
[106][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
Length = 2081
Score = 87.8 bits (216), Expect = 5e-16
Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 11/193 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FD ++ I + IN+L + + EV Q R N++ ++ RY +++++
Sbjct: 1685 DYSGFDTSTPRVLVYAIIDKINEL---ADDGEVNQRTRRNIIRFVLNRYLISDGVLYEIH 1741
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLIS 369
G PSGFA TV++NSV NE +++++ L A + F + + +YGDDN +S
Sbjct: 1742 GGTPSGFAPTVMINSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVS 1801
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF---WELDFLKRKFLKLDTG 540
VA AS +N I L VK+ DG A T KPF E+DFLKR+F+ D+G
Sbjct: 1802 VATPVASVYNLTTISNFLGRIGVKLGDG----AKTGTIKPFIPLEEVDFLKRQFV-ADSG 1856
Query: 541 --VIQAPLDMTAI 573
I PL +I
Sbjct: 1857 STAILCPLKKISI 1869
[107][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
RepID=UPI0000164A61
Length = 694
Score = 87.0 bits (214), Expect = 9e-16
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 5/189 (2%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M++ L +G+ R N++ V R V + +++
Sbjct: 281 NGDYTGFDTATPRVLMMKIADMVSNL---AGDGRENAIVRRNLMKMAVERRILVLRDLYQ 337
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLA----PKPEKCRFQQTVCLI-VYGDDNLI 366
V G PSGFALTV++NSV N+ + +A+RK+ P R ++ C VYGDDN++
Sbjct: 338 VKGGTPSGFALTVIINSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVV 397
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
S + +N I L V ++DG K ++ F ELDFLKR+++
Sbjct: 398 SFSLQVKDMYNLVTIAAELKTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGF 456
Query: 547 QAPLDMTAI 573
PL +AI
Sbjct: 457 LCPLHKSAI 465
[108][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
Length = 1915
Score = 87.0 bits (214), Expect = 9e-16
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 5/189 (2%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M++ L +G+ R N++ V R V + +++
Sbjct: 1502 NGDYTGFDTATPRVLMMKIADMVSNL---AGDGRENAIVRRNLMKMAVERRILVLRDLYQ 1558
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLA----PKPEKCRFQQTVCLI-VYGDDNLI 366
V G PSGFALTV++NSV N+ + +A+RK+ P R ++ C VYGDDN++
Sbjct: 1559 VKGGTPSGFALTVIINSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVV 1618
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
S + +N I L V ++DG K ++ F ELDFLKR+++
Sbjct: 1619 SFSLQVKDMYNLVTIAAELKTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGF 1677
Query: 547 QAPLDMTAI 573
PL +AI
Sbjct: 1678 LCPLHKSAI 1686
[109][TOP]
>UniRef100_Q1LZW4 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q1LZW4_9VIRU
Length = 2107
Score = 86.3 bits (212), Expect = 2e-15
Identities = 62/192 (32%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L L +
Sbjct: 1833 DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLLEYLFNATWLMNG 1889
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+L SV+ + WFN AI +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHAITRLMAATGHEYTDETKSGSPP-PYRSLNEVTFLKREFVLRDH 2008
Query: 538 GVIQAPLDMTAI 573
I APL I
Sbjct: 2009 FWI-APLSRNTI 2019
[110][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
Length = 2163
Score = 86.3 bits (212), Expect = 2e-15
Identities = 66/190 (34%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DYS FD Q++ A++I++L A ++V R N++ V R V +++
Sbjct: 1563 NGDYSGFDTGTPRQLLLKFADLISELAADGRRNKVI---RRNLMQLAVDRRILVLAELYH 1619
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRK----LAPKPEKCRFQQTVCLI-VYGDDNLI 366
V G PSGFALTV++NS+ N+ + +A+RK ++P R +T C VYGDDN++
Sbjct: 1620 VRGGTPSGFALTVIINSMVNQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVV 1679
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTG-V 543
S + + +N I L V ++DG K I+ F +LDFLKR++ +L+ G
Sbjct: 1680 SFSLAVRDMYNLCTIADELKTIGVTLSDGK-KTGVLIKWTGFKDLDFLKRRW-ELEPGHG 1737
Query: 544 IQAPLDMTAI 573
+ PLD AI
Sbjct: 1738 FKCPLDKMAI 1747
[111][TOP]
>UniRef100_Q5MH31 Polyprotein n=1 Tax=Maize chlorotic dwarf virus RepID=Q5MH31_9SECO
Length = 3481
Score = 85.9 bits (211), Expect = 2e-15
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + Q+ I ++N Y + E R+ ++ +++ R V + +F+
Sbjct: 3167 DYSKFDGIGDPQIYHSITQVVNNWY---NDGEENARTRHALISSIIHREGIVKEYLFQYC 3223
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQTVCLIVYGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L+P+ F + ++VYGDDN++S
Sbjct: 3224 QGMPSGFAMTVIFNSFVNYYYLAMAWMNLISSSPLSPQSTLRDFDEYCKVVVYGDDNIVS 3283
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWEL---DFLKRKFLKLD-- 534
V+ ++N + L++ V TD D P +S P+ ++ FLKR++ +
Sbjct: 3284 VSEEFIPYYNLRMVAAYLSQFGVTYTD--DAKNPIEKSVPWVDIRTVSFLKRRWTSIGGQ 3341
Query: 535 -TGVIQAPLDMTAI 573
+ + +APL+ T+I
Sbjct: 3342 LSTIYKAPLETTSI 3355
[112][TOP]
>UniRef100_Q09X76 Nonstructural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q09X76_9VIRU
Length = 2107
Score = 85.5 bits (210), Expect = 3e-15
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L L +
Sbjct: 1833 DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLLEYLFNATWLMNG 1889
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVARIFYGDD 1949
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLSEVTFLKREFVLRDQ 2008
Query: 538 GVIQAPLDMTAI 573
I APL I
Sbjct: 2009 FWI-APLSQNTI 2019
[113][TOP]
>UniRef100_Q91NQ2 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q91NQ2_9VIRU
Length = 2107
Score = 85.1 bits (209), Expect = 4e-15
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L L +
Sbjct: 1833 DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLLEYLFNATWLMNG 1889
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLSEVTFLKREFVLRDH 2008
Query: 538 GVIQAPLDMTAI 573
I APL I
Sbjct: 2009 FWI-APLSRNTI 2019
[114][TOP]
>UniRef100_Q5DM98 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q5DM98_9VIRU
Length = 2107
Score = 84.7 bits (208), Expect = 5e-15
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L L +
Sbjct: 1833 DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLLEYLFNATWLMNG 1889
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLNEVTFLKREFVLRDH 2008
Query: 538 GVIQAPLDMTAI 573
I APL I
Sbjct: 2009 FWI-APLSRNTI 2019
[115][TOP]
>UniRef100_Q4JFT3 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q4JFT3_9VIRU
Length = 2107
Score = 84.7 bits (208), Expect = 5e-15
Identities = 61/192 (31%), Positives = 93/192 (48%), Gaps = 4/192 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L L +
Sbjct: 1833 DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLLEYLFNATWLMNG 1889
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLNEVTFLKREFVLRDH 2008
Query: 538 GVIQAPLDMTAI 573
I APL I
Sbjct: 2009 FWI-APLSRNTI 2019
[116][TOP]
>UniRef100_A6NA62 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato torrado
virus RepID=A6NA62_9SECO
Length = 216
Score = 84.0 bits (206), Expect = 8e-15
Identities = 61/182 (33%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ + DYS+FDG + ++++ Y S A R+ +LM Y
Sbjct: 36 SDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPDSNA-RHVLLMMASCHYTICE 94
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLI 342
KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K + +
Sbjct: 95 NKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVA 154
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESK--PFWELDFLKR 516
VYGDDNL++V P W+ AI L V I +G DK+ SK EL FL R
Sbjct: 155 VYGDDNLVAV-PMELQWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSR 213
Query: 517 KF 522
F
Sbjct: 214 GF 215
[117][TOP]
>UniRef100_Q6EEL1 Polyprotein n=1 Tax=Maize chlorotic dwarf virus RepID=Q6EEL1_9SECO
Length = 3457
Score = 82.8 bits (203), Expect = 2e-14
Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 12/194 (6%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
DYS FDG+ + Q+ I ++N Y + E R+ ++ +++ R V + +F+
Sbjct: 3143 DYSKFDGIGDPQIYHSITQVVNNWY---NDGEENATIRHALISSIIHRRGIVKEYLFQYC 3199
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQTVCLIVYGDDNLIS 369
G+PSGFA+TV+ NS N + A+ L+P+ F + +IVYGDDN+++
Sbjct: 3200 QGMPSGFAMTVIFNSFMNYYYLSLAWMNLISASPLSPQASLRYFDEYCKVIVYGDDNIVA 3259
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELD---FLKRKFLKLD-- 534
V ++N + L++ V TD D P +S+ + +++ FLKR+++ L
Sbjct: 3260 VNEEFLEYYNLRLVAGYLSQFGVSYTD--DAKNPIEKSERYVKIEDVTFLKRRWVSLGGR 3317
Query: 535 -TGVIQAPLDMTAI 573
+ + +APLD +I
Sbjct: 3318 ASMLYKAPLDKVSI 3331
[118][TOP]
>UniRef100_UPI0001765C94 RNA-dependent RNA polymerase n=1 Tax=Tomato marchitez virus
RepID=UPI0001765C94
Length = 249
Score = 82.4 bits (202), Expect = 2e-14
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 11/176 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
+ DYS+FDG + +++++ Y S A R+ +LM Y KVF+
Sbjct: 77 SADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPDSNA-RHALLMMASCHYTLCEDKVFR 135
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGD 354
+ G+PSGFALTV+ NS+ NE +RYA+ L +P + F Q + + VYGD
Sbjct: 136 LVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGD 194
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIESKPFWELDFLKR 516
DNL++V P W++ I L V I +G DK D ++ + EL FL R
Sbjct: 195 DNLVAV-PLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSR 249
[119][TOP]
>UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic
stunt virus RepID=B4ZF30_CNSV
Length = 73
Score = 79.7 bits (195), Expect = 1e-13
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = +1
Query: 244 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 423
+NSV NEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL
Sbjct: 1 INSVLNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETL 60
Query: 424 AEKKVKITDGSDK 462
+K V ITDGSDK
Sbjct: 61 KKKNVTITDGSDK 73
[120][TOP]
>UniRef100_B1PM64 Polyprotein (Fragment) n=1 Tax=Tomato torrado virus
RepID=B1PM64_9SECO
Length = 910
Score = 79.7 bits (195), Expect = 1e-13
Identities = 55/168 (32%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVG 186
++ + DYS+FDG + ++++ Y S A R+ +LM Y
Sbjct: 127 SDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPDSNA-RHVLLMMASCHYTICE 185
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLI 342
KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K + +
Sbjct: 186 NKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVA 245
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESK 486
VYGDDNL++V P W+ AI L V I +G DK+ SK
Sbjct: 246 VYGDDNLVAV-PMELHWYTLPAIAQELEVVNVIIKNGIDKNMDVSSSK 292
[121][TOP]
>UniRef100_UPI0000167D17 RNA-dependent RNA polymerase n=1 Tax=Parsnip yellow fleck virus
RepID=UPI0000167D17
Length = 813
Score = 79.0 bits (193), Expect = 3e-13
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + ++ + N Y +R N+ L R++ + + +
Sbjct: 306 NGDFANFDGMFHPSSFSMVSELANIFYG-----NFLSTERDNLTRMLTNRFSLMKGAILR 360
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLA------PKPEKCRFQQTVCLIVYGDDNL 363
V G PSGF +TV+ NS N ++ A+ LA C F + V VYGDDN+
Sbjct: 361 VPGGGPSGFPMTVIFNSFINLFYLQSAWIMLARFNGRQDISHPCNFPKYVRACVYGDDNI 420
Query: 364 ISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPF---WELDFLKRKFL-- 525
+++ W+N + + L + V +TDG+ A E+KP+ E DFLKR F
Sbjct: 421 VAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKAS--EAKPYGKILEFDFLKRHFKAD 478
Query: 526 KLDTGVIQAPLDMTAI 573
+L + APL +I
Sbjct: 479 ELIPSLFHAPLHKRSI 494
[122][TOP]
>UniRef100_Q05057 Probable RNA-directed RNA polymerase n=1 Tax=Parsnip yellow fleck
virus (isolate P-121) RepID=POLG_PYFV1
Length = 3027
Score = 79.0 bits (193), Expect = 3e-13
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + ++ + N Y +R N+ L R++ + + +
Sbjct: 2520 NGDFANFDGMFHPSSFSMVSELANIFYG-----NFLSTERDNLTRMLTNRFSLMKGAILR 2574
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLA------PKPEKCRFQQTVCLIVYGDDNL 363
V G PSGF +TV+ NS N ++ A+ LA C F + V VYGDDN+
Sbjct: 2575 VPGGGPSGFPMTVIFNSFINLFYLQSAWIMLARFNGRQDISHPCNFPKYVRACVYGDDNI 2634
Query: 364 ISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPF---WELDFLKRKFL-- 525
+++ W+N + + L + V +TDG+ A E+KP+ E DFLKR F
Sbjct: 2635 VAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKAS--EAKPYGKILEFDFLKRHFKAD 2692
Query: 526 KLDTGVIQAPLDMTAI 573
+L + APL +I
Sbjct: 2693 ELIPSLFHAPLHKRSI 2708
[123][TOP]
>UniRef100_B6UIR8 Polyprotein n=1 Tax=Carrot necrotic dieback virus RepID=B6UIR8_9SECO
Length = 3015
Score = 76.6 bits (187), Expect = 1e-12
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 12/196 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + + +A + N Y Q +R ++ AL R++ V V +
Sbjct: 2511 NGDFANFDGMFHPTSFDMVAELANIFYG-----GFQSDERTSLTKALTNRFSLVKGGVLR 2565
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK------CRFQQTVCLIVYGDDNL 363
++ G PSGF +TV+ NS N ++ A+ LA + + F V VYGDDN+
Sbjct: 2566 ISGGGPSGFPMTVIFNSFINLFYLQSAWIMLASQNGRSDISCPSNFPSFVRACVYGDDNI 2625
Query: 364 ISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPFWEL---DFLKRKFL-- 525
+++ W+N + + L + V +TDG+ A ++P+ ++ DFLKR F
Sbjct: 2626 VAIKNEVLPWYNLQTVSKILKDYFGVTMTDGAKNCAE--NAQPYGKILDFDFLKRNFRPD 2683
Query: 526 KLDTGVIQAPLDMTAI 573
+L + APL +I
Sbjct: 2684 ELIPSLFHAPLHKRSI 2699
[124][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
RepID=A7KCA2_9VIRU
Length = 1614
Score = 75.5 bits (184), Expect = 3e-12
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 3/193 (1%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 183
G + I DY AFD ++ + I ++I LSG + Q + A +A V
Sbjct: 1216 GEDRVIAGDYKAFDKRMSPKEILAAFDIIIYFCQLSGNYSEEDIQIIRCI-AEDTAFALV 1274
Query: 184 GQK--VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDD 357
+ ++ PSG LTV++NS+ N + +RY Y L P+ F+ V L+ YGDD
Sbjct: 1275 DYNGDLVQLYGSNPSGNPLTVILNSIVNSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDD 1334
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLD- 534
N++SV+ C WFN +I T A + T +DK++ ++ + FLKR + D
Sbjct: 1335 NIMSVSREC-DWFNHTSISETFATLNIVYT-MADKESASVPFINIKDASFLKRTWRMDDQ 1392
Query: 535 TGVIQAPLDMTAI 573
G APL+ +I
Sbjct: 1393 LGCYVAPLEEESI 1405
[125][TOP]
>UniRef100_Q0PWW5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Lettuce mottle
virus RepID=Q0PWW5_9VIRU
Length = 187
Score = 73.9 bits (180), Expect = 8e-12
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + + + + ++ NK Y G+S + A+R + AL R + V V
Sbjct: 46 NGDFANFDGMFHPEAFDMVCDLANKFY---GDS--RGAERKCLTEALTNRLSLVKGSVLS 100
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK------PEKCRFQQTVCLIVYGDDNL 363
+ G PSGF +TV+ NS N ++ A+ +LA + C +++ V VYGDDN+
Sbjct: 101 IGGGGPSGFPMTVIFNSFINLFYLQAAWIQLAKEHGRNDIAHPCFYKKFVRAYVYGDDNI 160
Query: 364 ISVAPSCASWFN 399
+S+ SW+N
Sbjct: 161 VSIKEEVISWYN 172
[126][TOP]
>UniRef100_Q0PWW6 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Lettuce mottle
virus RepID=Q0PWW6_9VIRU
Length = 292
Score = 73.2 bits (178), Expect = 1e-11
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + + + ++ NK Y G+S + A+R + AL R + V V
Sbjct: 151 NGDFANFDGMFHPDAFDMVCDLANKFY---GDS--RGAERKCLTEALTNRLSLVKGSVLS 205
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK------PEKCRFQQTVCLIVYGDDNL 363
+ G PSGF +TV+ NS N ++ A+ +LA + C +++ V VYGDDN+
Sbjct: 206 IGGGGPSGFPMTVIFNSFINLFYLQAAWIQLAKEHGRSDIAHPCFYKKFVRAYVYGDDNI 265
Query: 364 ISVAPSCASWFN 399
+S+ SW+N
Sbjct: 266 VSIKEEVISWYN 277
[127][TOP]
>UniRef100_A5A104 Polyprotein n=1 Tax=Brevicoryne brassicae picorna-like virus
RepID=A5A104_9VIRU
Length = 2983
Score = 72.8 bits (177), Expect = 2e-11
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 6/191 (3%)
Frame = +1
Query: 19 INCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVF 198
I DYS F LN++V+ +I K Y G S R M L+ + ++
Sbjct: 2718 ITGDYSGFGPSLNSEVVTAAFRIICKWYKQYGCSVEDNHIRMMMSKELINAKHLMRDYLY 2777
Query: 199 KVNCGLPSGFALTVVVNSVFNEILIRYAY---RKLAPKPEKCRFQQTVCLIVYGDDNLIS 369
+V CGLPSG TV+ NS+ N I IR A+ + + F+ + LI YGDD + S
Sbjct: 2778 EVQCGLPSGNPATVIFNSIVNSIYIRCAWLDVMRNSSYKSLLDFRNNIKLITYGDDLIAS 2837
Query: 370 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWE-LDFLKRKFL--KLDTG 540
+ S + FN ++ + +K TD + K +E + E FLK F + G
Sbjct: 2838 IDNSVSDKFNNNSLSHFFLKHNIKFTDAA-KTGVNVEPYIYLETATFLKHAFKPHPIRQG 2896
Query: 541 VIQAPLDMTAI 573
V A L+ +I
Sbjct: 2897 VYLAQLEELSI 2907
[128][TOP]
>UniRef100_Q4QZ13 Putative polymerase (Fragment) n=1 Tax=Lettuce mottle virus
RepID=Q4QZ13_9VIRU
Length = 187
Score = 72.0 bits (175), Expect = 3e-11
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + E + ++ NK Y G+S + +R + AL R + + V
Sbjct: 46 NGDFANFDGMFHPDAFEMVCDLANKFY---GDS--RGPERKCLTEALTNRLSLIKGSVLS 100
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK------PEKCRFQQTVCLIVYGDDNL 363
+ G PSGF +TV+ NS N ++ A+ +LA + C +++ V VYGDDN+
Sbjct: 101 IGGGGPSGFPMTVIFNSFINLFYLQAAWIQLAKEHGRDDIAHPCFYKKFVRAYVYGDDNI 160
Query: 364 ISVAPSCASWFN 399
+S+ SW+N
Sbjct: 161 VSIKEEVISWYN 172
[129][TOP]
>UniRef100_C1K2M4 Protease/RNA-dependent RNA polymerase (Fragment) n=1 Tax=Nasonia
vitripennis virus RepID=C1K2M4_9VIRU
Length = 787
Score = 71.6 bits (174), Expect = 4e-11
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 7/152 (4%)
Frame = +1
Query: 139 RYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAP-K 303
RY M+ L+ V + + N G+PSG A TV+ NS N I IR AY RK AP
Sbjct: 560 RYTMIEELINPLNIVKDCIVRFNTGMPSGNAGTVITNSECNSIYIRCAYLGLARKYAPVL 619
Query: 304 PEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES 483
+ F+Q V + GDD +++V P SWFN + ++ +K+TD K E
Sbjct: 620 ADLYWFKQYVRMFSNGDDLIMAVKPDIISWFNNRTLIDFFSQHNIKMTDAL-KSGKVREF 678
Query: 484 KPFWELDFLKRKFLKLDT--GVIQAPLDMTAI 573
E +LKR F K T G APL+ +I
Sbjct: 679 CSLEEATYLKRGFKKHPTRPGEWLAPLERASI 710
[130][TOP]
>UniRef100_Q0EDJ7 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ7_9VIRU
Length = 297
Score = 71.2 bits (173), Expect = 5e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[131][TOP]
>UniRef100_Q0EDJ3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ3_9VIRU
Length = 297
Score = 71.2 bits (173), Expect = 5e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[132][TOP]
>UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F388_9VIRU
Length = 139
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + +RYAY L PK E F++ V L+ YGDDN++SV+P+ A W+
Sbjct: 59 PSGHPLTVIINSLVNSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWY 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N AI A + T
Sbjct: 118 NHTAIAAAFATMDITYT 134
[133][TOP]
>UniRef100_Q6A2S7 Polyprotein (Fragment) n=1 Tax=Arracacha virus B RepID=Q6A2S7_9SECO
Length = 251
Score = 70.9 bits (172), Expect = 7e-11
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLY------ALSGESEVQQAQRYNMLMALVG-RYAF 180
N DYS FDG+ V++ +A I+K Y L + +++ + +++L+ + RY
Sbjct: 135 NGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVPKKKIRTSVAHSLLLDMANSRYGI 194
Query: 181 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRF 321
G V+KV+ G+PSGF LTV+VNS+ N + +AYRKL + K F
Sbjct: 195 AGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHF 241
[134][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
RepID=Q9IJX4_CRPV
Length = 1771
Score = 70.5 bits (171), Expect = 9e-11
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVI-ECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV- 183
N+ I D+ FDG L AQ + + + + +R LM +G + +
Sbjct: 1495 NKVIAGDFGNFDGSLVAQFFGQSCGKSFYPWFKTFNDVNTEDGKRN--LMICIGLWTHIV 1552
Query: 184 ------GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCR-FQQT 330
G V+ PSG TV++N ++N +++R + RKLAP+ + + F++
Sbjct: 1553 HSVHSYGDNVYMWTHSQPSGNPFTVIINCLYNSMIMRIVWILLARKLAPEMQSMKKFREN 1612
Query: 331 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFL 510
V +I YGDDN ++++ WFN I + E K + TD K ++ E+ FL
Sbjct: 1613 VSMISYGDDNCLNISDRVVEWFNQITISEQMKEIKHEYTD-EGKTGDMVKFPSLSEIHFL 1671
Query: 511 KRKFL 525
K++F+
Sbjct: 1672 KKRFV 1676
[135][TOP]
>UniRef100_Q8B3M2 Polyprotein n=1 Tax=Deformed wing virus RepID=Q8B3M2_9VIRU
Length = 2893
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 2755
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 2756 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 2815 ANLDKVSV 2822
[136][TOP]
>UniRef100_Q7TG18 Polyprotein n=1 Tax=Deformed wing virus RepID=Q7TG18_9VIRU
Length = 2893
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 2755
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 2756 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 2815 ANLDKVSV 2822
[137][TOP]
>UniRef100_Q6XMI0 Polyprotein (Fragment) n=1 Tax=Deformed wing virus RepID=Q6XMI0_9VIRU
Length = 1566
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 1382 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 1440
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 1441 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 1499
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 1500 ANLDKVSV 1507
[138][TOP]
>UniRef100_Q0EDK8 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK8_9VIRU
Length = 297
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[139][TOP]
>UniRef100_Q0EDI6 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDI6_9VIRU
Length = 297
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[140][TOP]
>UniRef100_A0ZSE7 Polyprotein (Fragment) n=13 Tax=Kakugo virus RepID=A0ZSE7_9VIRU
Length = 297
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[141][TOP]
>UniRef100_Q0EDK3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK3_9VIRU
Length = 297
Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKISV 269
[142][TOP]
>UniRef100_Q0EDI5 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDI5_9VIRU
Length = 297
Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGVTDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[143][TOP]
>UniRef100_Q0EDJ0 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ0_9VIRU
Length = 297
Score = 69.7 bits (169), Expect = 2e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T + N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDIXNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[144][TOP]
>UniRef100_A0ZSF1 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=A0ZSF1_9VIRU
Length = 297
Score = 69.7 bits (169), Expect = 2e-10
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEXTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 256
[145][TOP]
>UniRef100_Q9DSN9 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q9DSN9_9VIRU
Length = 1906
Score = 69.3 bits (168), Expect = 2e-10
Identities = 59/199 (29%), Positives = 93/199 (46%), Gaps = 17/199 (8%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
D+S FDG LN ++E A++ N+ Y E+ + R+ +LM + G V+ +
Sbjct: 1644 DFSTFDGSLNVCIMEKFADLANEFYDDGSENALI---RHVLLMDVYNSTHICGDSVYMMT 1700
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCR----FQQTVCLIVYGDDN 360
PSG T +N N + +R + + K KC F + V ++ YGDDN
Sbjct: 1701 HSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVSIVSYGDDN 1760
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAP---TIESKPFWELDFLKRKF 522
+I+ + + WFN E I + TD G + + P TIE ++ +LKRKF
Sbjct: 1761 VINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWRTIE-----DVQYLKRKF 1815
Query: 523 LKLDT--GVIQAPLDMTAI 573
+ D+ V +APL M I
Sbjct: 1816 -RYDSKRKVWEAPLCMDTI 1833
[146][TOP]
>UniRef100_Q0EDK9 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK9_9VIRU
Length = 297
Score = 69.3 bits (168), Expect = 2e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGXTDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[147][TOP]
>UniRef100_Q0EDJ8 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ8_9VIRU
Length = 297
Score = 69.3 bits (168), Expect = 2e-10
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K+ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMGFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[148][TOP]
>UniRef100_A1X599 Polyprotein (Fragment) n=1 Tax=Deformed wing virus
RepID=A1X599_9VIRU
Length = 205
Score = 69.3 bits (168), Expect = 2e-10
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 90 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 148
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 149 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 202
[149][TOP]
>UniRef100_A0ZSF0 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=A0ZSF0_9VIRU
Length = 297
Score = 69.3 bits (168), Expect = 2e-10
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 256
[150][TOP]
>UniRef100_Q0EDK4 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK4_9VIRU
Length = 297
Score = 68.9 bits (167), Expect = 3e-10
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEXTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 256
[151][TOP]
>UniRef100_Q8BDE0 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q8BDE0_9VIRU
Length = 1904
Score = 68.6 bits (166), Expect = 3e-10
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
D+S FDG LN ++E A++ N+ Y E+ + R+ +LM + G V+ +
Sbjct: 1642 DFSTFDGSLNVCIMEKFADLANEFYDDGPENALI---RHVLLMDVYNSTHVCGDSVYMMT 1698
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR---------FQQTVCLIVYGDDN 360
PSG T +N N + +R + + K F + V ++ YGDDN
Sbjct: 1699 HSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKRYVMKDFSKHVSIVSYGDDN 1758
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAP---TIESKPFWELDFLKRKF 522
+I+ + + WFN E I + TD G++ + P TIE ++ +LKRKF
Sbjct: 1759 VINFSDEVSEWFNMETITEAFEKLGFTYTDELKGNNGEVPKWRTIE-----DVQYLKRKF 1813
Query: 523 LKLDT--GVIQAPLDMTAI 573
+ D+ V +APL M I
Sbjct: 1814 -RYDSKRKVWEAPLSMDTI 1831
[152][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
Length = 1759
Score = 68.6 bits (166), Expect = 3e-10
Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 12/177 (6%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV-------G 186
D+ FDG L AQ++ I I ++ L +++ ++ +L +G ++ +
Sbjct: 1489 DFGNFDGSLVAQILWAIFWEIFVVW-LKQFIDIENSEGKRILCICLGLWSHLVHSVHIYE 1547
Query: 187 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYG 351
V+ PSG TV++N ++N I++R ++ K P+ + + F + V LI YG
Sbjct: 1548 DNVYMWTHSQPSGNPFTVIINCLYNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYG 1607
Query: 352 DDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
DDN++++ WFN I + E + + TD + K ++S+ ++ FLKRKF
Sbjct: 1608 DDNVLNIDAKVVEWFNQINISEVMTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKF 1663
[153][TOP]
>UniRef100_B1A455 Replication-associated polyprotein (Fragment) n=1 Tax=Black raspberry
necrosis virus RepID=B1A455_9SECO
Length = 983
Score = 68.6 bits (166), Expect = 3e-10
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 5/149 (3%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DYS FD Q+ +++I+ L A ++V R N++ V R V +++
Sbjct: 822 NGDYSGFDTGTPRQLSLKFSDLISDLAADGRRNKVI---RRNLMQLAVDRRILVLSELYH 878
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRK----LAPKPEKCRFQQTVCLI-VYGDDNLI 366
V G PSGFALTV++NS+ N+ + +A+RK ++P R ++ C VYGDDN++
Sbjct: 879 VRGGTPSGFALTVIINSMVNQFYLMWAWRKIMARISPSMVTYRIMRSHCTFSVYGDDNVV 938
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDG 453
S + + +N I L V ++DG
Sbjct: 939 SFSLAVRDMYNLCTIADELKTIGVTLSDG 967
[154][TOP]
>UniRef100_Q8BDE1 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q8BDE1_9VIRU
Length = 1904
Score = 68.2 bits (165), Expect = 4e-10
Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 16/198 (8%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
D+S FDG LN ++E A++ N+ Y E+ + R+ +LM + G V+ +
Sbjct: 1642 DFSTFDGSLNVCIMEKFADLANEFYDDGPENALI---RHVLLMDVYNSTHICGDSVYMMT 1698
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR---------FQQTVCLIVYGDDN 360
PSG T +N N + +R + + K F + V ++ YGDDN
Sbjct: 1699 HSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKRYVMKDFSKHVSIVSYGDDN 1758
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAP---TIESKPFWELDFLKRKF 522
+I+ + + WFN E I + TD G++ + P TIE ++ +LKRKF
Sbjct: 1759 VINFSDEVSEWFNMETITEAFEKLGFTYTDELKGNNGEVPKWRTIE-----DVQYLKRKF 1813
Query: 523 -LKLDTGVIQAPLDMTAI 573
V +APL M I
Sbjct: 1814 RYDFKRKVWEAPLCMDTI 1831
[155][TOP]
>UniRef100_Q7TFA5 Polyprotein n=1 Tax=Varroa destructor virus 1 RepID=Q7TFA5_9VIRU
Length = 2893
Score = 68.2 bits (165), Expect = 4e-10
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Frame = +1
Query: 28 DYSAF----DGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
DY F D + A E I + + Y + + + + M ++ V
Sbjct: 2639 DYKNFGPGLDSDVAASAFEIIIDWVLN-YTEEDDKDEMKRVMWTMAQEILAPSHLCRDLV 2697
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
++V CG+PSG +T ++N++ N +LIR A++ + P F + V L+ YGDD +++V+
Sbjct: 2698 YRVPCGIPSGSPITDILNTISNCLLIRLAWQGITDLP-LSEFSRHVVLVCYGDDLIMNVS 2756
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQA 552
FN I + K++ TD DK T+ + FLK FLK T V A
Sbjct: 2757 DEMIDKFNAVTIGDFFSRYKMEFTD-QDKSGNTVRWRTLQTATFLKHGFLKHPTRPVFLA 2815
Query: 553 PLDMTAI 573
LD +I
Sbjct: 2816 NLDKVSI 2822
[156][TOP]
>UniRef100_Q6WGS3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS3_9PICO
Length = 151
Score = 68.2 bits (165), Expect = 4e-10
Identities = 40/100 (40%), Positives = 59/100 (59%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
+ + N PSG LTV++NS+ N + +RYAY L+P+ + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYVLSPQKDLLTFKHHVALFTYGDDNICGV 109
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF 492
+ CA +F I+ LAE ++ T +DK+A ES PF
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEA---ESVPF 144
[157][TOP]
>UniRef100_B3TZF0 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZF0_9VIRU
Length = 1950
Score = 68.2 bits (165), Expect = 4e-10
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 8/196 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 1687 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGAENGLI---RHVLLMDVYNSVHICND 1743
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + ++ A K F + V ++ YGDD
Sbjct: 1744 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFAICAKEAAVKMTMKDFGKHVSMVSYGDD 1803
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAPTIESKPFWELDFLKRKF-L 525
N+I+ + W+N E I TD G++ + P S ++ +LKRKF
Sbjct: 1804 NVINFSDEVCEWYNMETIAKAFETLGFTYTDELKGANGEVPKWRS--IKDVQYLKRKFRY 1861
Query: 526 KLDTGVIQAPLDMTAI 573
V +APL M I
Sbjct: 1862 DEQRKVWEAPLCMDTI 1877
[158][TOP]
>UniRef100_Q76LW4 Polyprotein n=1 Tax=Kakugo virus RepID=Q76LW4_9VIRU
Length = 2893
Score = 67.8 bits (164), Expect = 6e-10
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 2755
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ ++ TD DK T++ + FLK FLK T V
Sbjct: 2756 SDNMIDKFNAVTIGKFFSQYEMVFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 2815 ANLDKVSV 2822
[159][TOP]
>UniRef100_Q6WGR8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGR8_9PICO
Length = 151
Score = 67.8 bits (164), Expect = 6e-10
Identities = 40/100 (40%), Positives = 58/100 (58%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
+ + N PSG LTV++NS+ N + +RYAY L P+ + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYALNPQKDLLTFKHRVALFTYGDDNICGV 109
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF 492
+ CA +F I+ LAE ++ T +DK+A ES PF
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEA---ESVPF 144
[160][TOP]
>UniRef100_Q0PWW7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Dandelion yellow
mosaic virus RepID=Q0PWW7_9VIRU
Length = 262
Score = 67.8 bits (164), Expect = 6e-10
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N D++ FDG+ + + + Y G + ++ R + +L R + V V
Sbjct: 74 NGDFANFDGMFHPDSFAMVEELATYFYR--GHNALE---RKTLTESLTNRLSLVKGAVLS 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNL 363
+ G PSGF +TV+ NS N + A+ LA + F++ V VYGDDN+
Sbjct: 129 IGGGGPSGFPMTVIFNSYINLFYLMSAWSHLATDNGRVDIQHPSFFKKYVRACVYGDDNI 188
Query: 364 ISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPF---WELDFLKRKFL-- 525
+S+ SW+N ++ L + V +TDG +A +KP+ E DFLKR F
Sbjct: 189 VSIKEEVISWYNLCSVSDFLKKAFGVTMTDGEKNEAHL--AKPYGKILEFDFLKRGFFPD 246
Query: 526 KLDTGVIQAPLDMTAI 573
+ APL+ +I
Sbjct: 247 SQIPSLFHAPLNKVSI 262
[161][TOP]
>UniRef100_Q0EDJ6 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ6_9VIRU
Length = 297
Score = 67.8 bits (164), Expect = 6e-10
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD ++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLXMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD D T++ + FLK FLK T V
Sbjct: 203 SDNXIDXFNAVTIGKFFSQYKMEFTD-QDXSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[162][TOP]
>UniRef100_B3F389 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F389_9VIRU
Length = 139
Score = 67.8 bits (164), Expect = 6e-10
Identities = 34/77 (44%), Positives = 46/77 (59%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + IRY YR L PK E F+Q V L+ YGDDN++ ++ SWF
Sbjct: 59 PSGHPLTVIINSLVNSLYIRYCYRMLNPKKEVITFKQNVNLMTYGDDNIMGISDK-ISWF 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N +I L + T
Sbjct: 118 NHTSIADCLGMANIVYT 134
[163][TOP]
>UniRef100_Q80AG3 Non-structural polyprotein n=1 Tax=Kashmir bee virus
RepID=Q80AG3_9VIRU
Length = 1933
Score = 67.4 bits (163), Expect = 8e-10
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 8/196 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 1670 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENALI---RHVLLMDVYNSVHVCND 1726
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR----KLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + K A K F + V L+ YGDD
Sbjct: 1727 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATKAAVKMTMRDFSKHVSLVSYGDD 1786
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAPTIESKPFWELDFLKRKF-L 525
N+I+ + ++W+N I + TD G + P S ++ +LKRKF
Sbjct: 1787 NVINFSDEVSAWYNMSTIAEAFSTLGFTYTDELKGVRGEVPNWRS--IQDVQYLKRKFRY 1844
Query: 526 KLDTGVIQAPLDMTAI 573
V +APL M I
Sbjct: 1845 DNQRKVWEAPLCMDTI 1860
[164][TOP]
>UniRef100_Q6WGS5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=unidentified
picorna-like virus RepID=Q6WGS5_9PICO
Length = 151
Score = 67.0 bits (162), Expect = 1e-09
Identities = 40/100 (40%), Positives = 58/100 (58%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
+ + N PSG LTV++NS+ N + +RYAY L P+ + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYVLNPQKDLLTFKHHVALFTYGDDNICGV 109
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF 492
+ CA +F I+ LAE ++ T +DK+A ES PF
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEA---ESVPF 144
[165][TOP]
>UniRef100_Q0EDJ5 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ5_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 43/128 (33%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD ++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLXMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQ 549
+ + FN I ++ K++ TD D T++ + FLK FLK T V
Sbjct: 203 SDNXIDKFNAVTIGKFFSQYKMEFTD-QDXSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 550 APLDMTAI 573
A LD ++
Sbjct: 262 ANLDKVSV 269
[166][TOP]
>UniRef100_Q9WCE9 Polyprotein n=1 Tax=Sacbrood virus RepID=Q9WCE9_9VIRU
Length = 2858
Score = 66.6 bits (161), Expect = 1e-09
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N DYS F NAQ+ + ++ + + + V + + Y +L + V
Sbjct: 2595 NNICTIDYSNFGPGFNAQIAKAAMELMVR-WTMEHVEGVNEIEAYTLLHECLNSVHLVSN 2653
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVYGDD 357
+++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L YGDD
Sbjct: 2654 TLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCYGDD 2713
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
++SV FN I LA+ + TD + D
Sbjct: 2714 LIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 2749
[167][TOP]
>UniRef100_Q0EDK2 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK2_9VIRU
Length = 297
Score = 66.6 bits (161), Expect = 1e-09
Identities = 39/115 (33%), Positives = 63/115 (54%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEXSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 256
[168][TOP]
>UniRef100_Q0EDK1 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK1_9VIRU
Length = 297
Score = 66.6 bits (161), Expect = 1e-09
Identities = 39/115 (33%), Positives = 63/115 (54%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
V++V CG+PSG +T ++N++ N +LIR A+ + P Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEXSQNVVLVCYGDDLIMNV 202
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT 537
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 256
[169][TOP]
>UniRef100_B3TZL6 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZL6_9VIRU
Length = 1950
Score = 66.6 bits (161), Expect = 1e-09
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 1687 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGAENSLI---RHVLLMDVYNSVHICND 1743
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + R K F + V ++ YGDD
Sbjct: 1744 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFAICARNAGIKMTMKDFGKHVSMVSYGDD 1803
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAPTIESKPFWELDFLKRKF-L 525
N+I+ + W+N E I TD G + + P S ++ +LKRKF
Sbjct: 1804 NVINFSDEVCEWYNMETIAKAFETLGFTYTDELKGVNGEVPKWRS--IKDVQYLKRKFRY 1861
Query: 526 KLDTGVIQAPLDMTAI 573
V +APL M I
Sbjct: 1862 DEQRKVWEAPLCMDTI 1877
[170][TOP]
>UniRef100_B3F394 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F394_9VIRU
Length = 138
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++N + N + +RY Y KL+P+ F++ V ++ YGDDN++ V+ S A WF
Sbjct: 58 PSGHPLTVIINGLANSLYLRYCYAKLSPEANCVNFKRDVAVMTYGDDNIMGVSDS-APWF 116
Query: 397 NGEAIRVTLAE 429
N ++ TLA+
Sbjct: 117 NHTTLQSTLAD 127
[171][TOP]
>UniRef100_Q5Y975 Nonstructural polyprotein n=1 Tax=Solenopsis invicta virus 1
RepID=Q5Y975_9VIRU
Length = 1396
Score = 66.2 bits (160), Expect = 2e-09
Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 17/199 (8%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVN 207
D+S FDG LNA ++ A M N+ Y + RY ++ ++ Q + +
Sbjct: 1130 DFSNFDGSLNAMIMYLFARMANEFY-----DDGNDLIRYVLIEEILNSVHLCEQFFYMMT 1184
Query: 208 CGLPSGFALTVVVNSVFNEILIRYAY---------------RKLAPKPEKCRFQQTVCLI 342
PSG T +N + N I +R + +K K F+ V LI
Sbjct: 1185 HSQPSGNPATTPLNCLINSIGLRLCFLRCFEEHKAFFMELMKKFGCKTRMELFRLLVSLI 1244
Query: 343 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI-ESKPFWELDFLKRK 519
YGDDN+I++ P + FN I AE TD + + + + K E+ FLKR
Sbjct: 1245 SYGDDNVINIHPLISHLFNMNTITKYFAEFGFTYTDETKQVGKGVPDYKTLEEVSFLKRG 1304
Query: 520 FL-KLDTGVIQAPLDMTAI 573
F+ + APLD+ I
Sbjct: 1305 FIFNEERNCYDAPLDINTI 1323
[172][TOP]
>UniRef100_Q0EDJ2 Polyprotein (Fragment) n=2 Tax=Kakugo virus RepID=Q0EDJ2_9VIRU
Length = 297
Score = 65.9 bits (159), Expect = 2e-09
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 5/187 (2%)
Frame = +1
Query: 28 DYSAF----DGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
DY F D + A E I + + + E+++ + M ++ V
Sbjct: 86 DYKNFGPGLDSDVAASAFEIIIDWVLHYXEEDNKDEMKRVM-WTMAQEILAPSHLCRDLV 144
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVA 375
+V CG+PSG T ++N++ N +LIR A+ + P F Q V L+ YGDD ++V+
Sbjct: 145 XRVPCGIPSGSPXTDILNTISNCLLIRLAWLGITDXP-LSEFSQNVVLVCYGDDLXMNVS 203
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDT-GVIQA 552
+ FN I ++ K++ TD D T++ + FLK FLK T V A
Sbjct: 204 DNMIDXFNAVTIGKFFSQYKMEFTD-QDXSGNTVKWRTLQTATFLKHGFLKHPTRPVFLA 262
Query: 553 PLDMTAI 573
LD ++
Sbjct: 263 NLDKVSV 269
[173][TOP]
>UniRef100_B3F397 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F397_9VIRU
Length = 152
Score = 65.9 bits (159), Expect = 2e-09
Identities = 38/96 (39%), Positives = 57/96 (59%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + +RYAY L P+ E F++ V L+ YGDDN+++V+ + W+
Sbjct: 59 PSGHPLTVIINSLVNSLYMRYAYIILNPEQESASFRKNVALLTYGDDNILTVSRN-IDWY 117
Query: 397 NGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELD 504
N I A+ + T DK+A ES PF L+
Sbjct: 118 NHTTITQAFADIGLVYT-MPDKEA---ESVPFLSLN 149
[174][TOP]
>UniRef100_Q8QY61 Polyprotein n=1 Tax=Sacbrood virus RepID=Q8QY61_9VIRU
Length = 2860
Score = 65.5 bits (158), Expect = 3e-09
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N DYS F NAQ+ + ++ + + + V + + Y +L + V
Sbjct: 2597 NNICTIDYSNFGPGFNAQIAKAAMELMVR-WTMEHVEGVNEIEAYTLLHECLNSVHLVSN 2655
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVYGDD 357
+++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L YGDD
Sbjct: 2656 TLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCYGDD 2715
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGS 456
++SV FN I LA+ + TD +
Sbjct: 2716 LIMSVTDKYKDIFNALTISQFLAQYGIVATDAN 2748
[175][TOP]
>UniRef100_B3F387 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F387_9VIRU
Length = 139
Score = 65.5 bits (158), Expect = 3e-09
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + +RY Y L PK F++ V L+ YGDDN++ V+P A WF
Sbjct: 59 PSGHPLTVIINSIVNSLYMRYCYVMLNPKFTVATFKKHVRLMTYGDDNIMGVSPD-ARWF 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N AI L++ + T
Sbjct: 118 NHTAIAKVLSDIDITYT 134
[176][TOP]
>UniRef100_Q5S8C7 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=Q5S8C7_9VIRU
Length = 1900
Score = 64.7 bits (156), Expect = 5e-09
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 1637 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGKENNLI---RHVLLMDVYNSVHICND 1693
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + + K F + V ++ YGDD
Sbjct: 1694 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFAICVKNAGIKMTMRDFGKHVSMVSYGDD 1753
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAPTIESKPFWELDFLKRKF-L 525
N+I+ + W+N E I TD G + + P S ++ +LKRKF
Sbjct: 1754 NVINFSDEVCEWYNMETIAKAFETLGFTYTDELKGVNGEVPKWRS--IKDVQYLKRKFRY 1811
Query: 526 KLDTGVIQAPLDMTAI 573
V +APL M I
Sbjct: 1812 DEQRKVWEAPLCMDTI 1827
[177][TOP]
>UniRef100_B3TZL4 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZL4_9VIRU
Length = 1950
Score = 64.7 bits (156), Expect = 5e-09
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 8/196 (4%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 1687 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGKENNLI---RHVLLMDVYNSVHICND 1743
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP----KPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + A K F + V ++ YGDD
Sbjct: 1744 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFAICAKNAGIKMTMRDFGKHVSMVSYGDD 1803
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAPTIESKPFWELDFLKRKF-L 525
N+I+ + W+N E I TD G + + P S ++ +LKRKF
Sbjct: 1804 NVINFSDEVCEWYNMETIAKAFETLGFTYTDELKGVNGEVPKWRS--IKDVQYLKRKFRY 1861
Query: 526 KLDTGVIQAPLDMTAI 573
V +APL M I
Sbjct: 1862 DEQRKVWEAPLCMDTI 1877
[178][TOP]
>UniRef100_B3F390 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F390_9VIRU
Length = 139
Score = 64.7 bits (156), Expect = 5e-09
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + +RY YR L P E F++ V L+ YGDDN+++V+ SWF
Sbjct: 59 PSGHPLTVIINSLANALYMRYCYRILNPAHECSTFKKNVNLMTYGDDNIMNVSKH-TSWF 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N +I TL E + T
Sbjct: 118 NHTSIANTLKEIGITYT 134
[179][TOP]
>UniRef100_Q6WGT7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGT7_9PICO
Length = 148
Score = 64.3 bits (155), Expect = 6e-09
Identities = 40/96 (41%), Positives = 55/96 (57%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV+VNS+ N + +RY Y L P E F++ V L+ YGDDN++ S WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENVSLLTYGDDNVMG---SKQDWF 114
Query: 397 NGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELD 504
N AI LA V+ T +DK++ +S PF +D
Sbjct: 115 NHTAIVAELANIGVEYT-MADKES---KSVPFIHID 146
[180][TOP]
>UniRef100_Q6WGS2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS2_9PICO
Length = 148
Score = 64.3 bits (155), Expect = 6e-09
Identities = 40/96 (41%), Positives = 55/96 (57%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV+VNS+ N + +RY Y L P E F++ V L+ YGDDN++ S WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENVSLLTYGDDNVMG---SKQDWF 114
Query: 397 NGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELD 504
N AI LA V+ T +DK++ +S PF +D
Sbjct: 115 NHTAIVAELANIGVEYT-MADKES---KSVPFIHID 146
[181][TOP]
>UniRef100_B3F391 RNA-dependent RNA polymerase (Fragment) n=2 Tax=uncultured marine
RNA virus RepID=B3F391_9VIRU
Length = 139
Score = 64.3 bits (155), Expect = 6e-09
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + +RY YR L P E F++ V L+ YGDDN+++V+ SWF
Sbjct: 59 PSGHPLTVIINSLANALYMRYCYRILNPVHECSTFKKNVNLMTYGDDNIMNVSKH-TSWF 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N +I TL E + T
Sbjct: 118 NHTSIANTLKEIGITYT 134
[182][TOP]
>UniRef100_Q6QLR4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Venturia canescens
picorna-like virus RepID=Q6QLR4_9PICO
Length = 514
Score = 63.9 bits (154), Expect = 8e-09
Identities = 50/138 (36%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK-----PEKCRFQQTVCLIVYGDD 357
VF+ CGLPSG TV NS N + IR A+ +LA + + F + V L+ GDD
Sbjct: 328 VFRPTCGLPSGNCETVERNSQTNSLYIRIAFYELAKRYAPVYRDAYWFDKKVRLVTNGDD 387
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD----GSDKDAPTIESKPFWELDFLKRKFL 525
+ SV SWFN + E +K+TD G +D +IE E +LKR F+
Sbjct: 388 LIASVKEDVISWFNNRTLIEFFVEYGLKMTDALKSGVVRDYCSIE-----EASYLKRGFV 442
Query: 526 KLDT--GVIQAPLDMTAI 573
K T G APL+ +I
Sbjct: 443 KHPTREGEWMAPLEEASI 460
[183][TOP]
>UniRef100_Q2HWK3 Polyprotein n=1 Tax=Rhizosolenia setigera RNA virus
RepID=Q2HWK3_9VIRU
Length = 1605
Score = 63.9 bits (154), Expect = 8e-09
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 15/187 (8%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 183
G N + D+ A+D ++A++ A + + L+G +E + L + G V
Sbjct: 1325 GKNRIVAGDFKAYDQHMSARMTLMAAKVFEYIAGLAGYTEEE-------LKIMRGASTEV 1377
Query: 184 GQKVFKVNCGL-------PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLI 342
V +N L PSG LTV NS+ N + R A+RK+ P R++ V L+
Sbjct: 1378 SYPVMSLNGELIQLYGSNPSGQNLTVYTNSIVNSLYHRCAFRKIYPN-FSGRYRDAVALM 1436
Query: 343 VYGDDNLISVAPS--------CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWE 498
YGDD +SV+P S FN + I T+AEK+ P I+ + +
Sbjct: 1437 TYGDDVKMSVSPKFPDYNHTRIQSEFNKQGIEYTMAEKEA-------ASVPFIQHE---D 1486
Query: 499 LDFLKRK 519
DFLKRK
Sbjct: 1487 ADFLKRK 1493
[184][TOP]
>UniRef100_Q6WGS9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS9_9PICO
Length = 148
Score = 63.5 bits (153), Expect = 1e-08
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV+VNS+ N + +RY Y L P E F++ V L+ YGDDN++ WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENVSLLTYGDDNVMGFK---QDWF 114
Query: 397 NGEAIRVTLAEKKVKIT--DGSDKDAPTI 477
N AI LA V+ T D K P+I
Sbjct: 115 NHTAIVAELANIGVEYTMADKESKSVPSI 143
[185][TOP]
>UniRef100_Q6WGR9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGR9_9PICO
Length = 151
Score = 63.2 bits (152), Expect = 1e-08
Identities = 39/100 (39%), Positives = 57/100 (57%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
+ + N PSG LTV++NS+ N + +RYAY L + + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYVLNLQKDLLTFKHHVALFTYGDDNICGV 109
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPF 492
+ CA +F I+ LAE ++ T +DK+A ES PF
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEA---ESVPF 144
[186][TOP]
>UniRef100_A7KCA0 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-A
RepID=A7KCA0_9VIRU
Length = 1689
Score = 63.2 bits (152), Expect = 1e-08
Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 4/195 (2%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 183
G + DYS +D + AQ+I + + G+ V + + +
Sbjct: 1420 GADRIFAGDYSKYDLRMPAQLILAAFKCLIDIAKTCGQYSVDDIKIMQGVATEIAYSCVS 1479
Query: 184 GQKVFKVNCGL-PSGFALTVVVNSVFNEILIRYAYRKLAPKPE--KCRFQQTVCLIVYGD 354
++CG PSG LTV +N + N +L+R AY + P E F+ ++ YGD
Sbjct: 1480 YNGDLIIHCGSNPSGQNLTVYINCIVNSLLLRCAYYHMYPAAEGNPEPFRHNCAVMTYGD 1539
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL-KL 531
D SV C W+N LAE+ + T + PT + DFLKR L
Sbjct: 1540 DVKGSVRQEC-DWYNHITYAQFLAERDMVFTMPDKESTPTPYMNDL-DADFLKRHNLYNP 1597
Query: 532 DTGVIQAPLDMTAIF 576
+TG+I LD +IF
Sbjct: 1598 ETGLIHGVLDQNSIF 1612
[187][TOP]
>UniRef100_Q7LZW0 Polyprotein n=1 Tax=Parsnip yellow fleck virus RepID=Q7LZW0_9SECO
Length = 637
Score = 62.8 bits (151), Expect = 2e-08
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 12/139 (8%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA------PKPEKCRFQQTVCLIVYGD 354
+ +V G PSGF +TV+ NS N ++ A+ LA C F + V VYGD
Sbjct: 491 ILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLARFNGRQDISHPCNFPKYVRACVYGD 550
Query: 355 DNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPF---WELDFLKRKF 522
DN++++ W+N + + L + V +TDG+ A E+KP+ E DFLKR F
Sbjct: 551 DNIVAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKAS--EAKPYGKILEFDFLKRHF 608
Query: 523 L--KLDTGVIQAPLDMTAI 573
+L + APL +I
Sbjct: 609 KADELIPSLFHAPLHKRSI 627
[188][TOP]
>UniRef100_UPI0000164A2C RNA-dependent RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=UPI0000164A2C
Length = 335
Score = 62.4 bits (150), Expect = 2e-08
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
NCDY AFDGL+ Q++ IA+MIN Y V QR N+L+A+ GR + G +V+
Sbjct: 272 NCDYKAFDGLITEQILSTIADMINAGY----RDPVGNRQRKNLLLAICGRLSICGNQVYA 327
Query: 202 VNCGLPSG 225
G+PSG
Sbjct: 328 TEAGIPSG 335
[189][TOP]
>UniRef100_Q995Q1 RNA polymerase (Fragment) n=3 Tax=Kashmir bee virus
RepID=Q995Q1_9VIRU
Length = 182
Score = 62.0 bits (149), Expect = 3e-08
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 25 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENALI---RHVLLMDVYNSVHICND 81
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR----KLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + K A K F + V L+ YGDD
Sbjct: 82 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATKAAVKMTMRDFSKHVSLVSYGDD 141
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD 450
N+I+ + ++W+N I + TD
Sbjct: 142 NVINFSDEVSAWYNMSTIAEAFSTLGFTYTD 172
[190][TOP]
>UniRef100_B5LPA0 Polyprotein n=1 Tax=Infectious flacherie virus RepID=B5LPA0_9VIRU
Length = 3085
Score = 62.0 bits (149), Expect = 3e-08
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
VFKVN G+ +G +T VVNSV N IL+ Y + K+A + F + +IV GDD +IS+
Sbjct: 2757 VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIA-RRRASEFFKLTYIIVMGDDVVISL 2815
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKP---FWELDFLKRKFLKLDT-- 537
F+ I A+ +K+TD S+K+ T E KP F + +FL R F D
Sbjct: 2816 PKQLTEEFDCRKICAEFAKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYP 2873
Query: 538 GVIQAPLDMTAIF 576
+ AP+ A+F
Sbjct: 2874 DITFAPVKTIALF 2886
[191][TOP]
>UniRef100_B9A8E0 Non-structural polyprotein n=1 Tax=Chaetoceros socialis f. radians
RNA virus RepID=B9A8E0_9VIRU
Length = 1690
Score = 61.6 bits (148), Expect = 4e-08
Identities = 47/172 (27%), Positives = 84/172 (48%)
Frame = +1
Query: 4 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 183
GTN + D+ A+D ++A+++ ++ ++ L+G S+ + M + +
Sbjct: 1405 GTNRIVAGDFKAYDQHMSARMVLISYYIVEQIAKLAGYSDEECKLIRGMATDVAYPMMSL 1464
Query: 184 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNL 363
++ K+ PSG TV NS+ N I R + L P+ E FQ V L+ YGDDN
Sbjct: 1465 NGELIKLFGSNPSGQNGTVYTNSIVNSIYQRCVFFTLYPEYEG-NFQDVVHLLTYGDDNK 1523
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRK 519
+ ++P +N ++ A ++ T ++K+A ++ E DFLKRK
Sbjct: 1524 MGISPDFPK-YNHTEMQKVYASVGIEYT-MAEKEAESVPLINHTEADFLKRK 1573
[192][TOP]
>UniRef100_B3F386 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F386_9VIRU
Length = 139
Score = 61.6 bits (148), Expect = 4e-08
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N I +RY Y L P E F+ V L+ YGDDN+++V+ C W+
Sbjct: 59 PSGNPLTVILNSIVNCIRMRYVYLVLNPDKEVETFKNNVSLMTYGDDNIMTVSEEC-DWY 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N AI E V T
Sbjct: 118 NHTAISQAFKESGVVYT 134
[193][TOP]
>UniRef100_A7LM73 Polyprotein n=1 Tax=Honey bee slow paralysis virus RepID=A7LM73_9VIRU
Length = 2964
Score = 61.6 bits (148), Expect = 4e-08
Identities = 49/189 (25%), Positives = 96/189 (50%), Gaps = 11/189 (5%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYALSGESE-----VQQAQRYNMLMALVGRYAFVGQK 192
DY+ F +++Q++ + I + ++G +E ++ +Y++L+ L
Sbjct: 2709 DYANFGPCVSSQIVYSCIDDIIYWHKINGATEDHCRHLELLLKYSILLPL----HLCDNC 2764
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDDN 360
V++ G+ SG +T +NS + I+ A+ R+L K F + ++VYGDD
Sbjct: 2765 VYQSLNGIASGSPITAELNSEVGKKYIKLAFLGICRQLNYKYSLNDFNKHCRVVVYGDDL 2824
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL--KLD 534
++SV+ + SWFN ++I L +++TD + KD ++ +P + FLKR F
Sbjct: 2825 ILSVSDAFVSWFNLQSISEYLDNYGIRLTDVT-KDGTIVKYRPLADSSFLKRSFKPHPSR 2883
Query: 535 TGVIQAPLD 561
+G+ AP++
Sbjct: 2884 SGIYLAPIE 2892
[194][TOP]
>UniRef100_Q6WGS1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS1_9PICO
Length = 148
Score = 61.2 bits (147), Expect = 5e-08
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV+VNS+ N + +RY Y L P E F++ L+ YGDDN++ WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENESLLTYGDDNVMGFK---QDWF 114
Query: 397 NGEAIRVTLAEKKVKIT--DGSDKDAPTI 477
N AI LA V+ T D K P+I
Sbjct: 115 NHTAIVAELANIGVEYTMADKESKSVPSI 143
[195][TOP]
>UniRef100_Q9QAG7 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9QAG7_9VIRU
Length = 182
Score = 60.8 bits (146), Expect = 7e-08
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM +
Sbjct: 24 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENALI---RHVLLMDVYNSVHICND 80
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR----KLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + K A + F + V L+ YGDD
Sbjct: 81 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATKAAVRMTMRDFSKHVSLVSYGDD 140
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD 450
N+I+ + ++W+N I + TD
Sbjct: 141 NVINFSDEVSAWYNMSTIAEAFSTLGFTYTD 171
[196][TOP]
>UniRef100_Q9DSG1 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9DSG1_9VIRU
Length = 228
Score = 60.5 bits (145), Expect = 9e-08
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 4/151 (2%)
Frame = +1
Query: 10 NEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQ 189
N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +L+ +
Sbjct: 71 NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENALI---RHVLLVDVYNSVHICND 127
Query: 190 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR----KLAPKPEKCRFQQTVCLIVYGDD 357
V+ + PSG T +N N + +R + K A K F + V L+ YGDD
Sbjct: 128 SVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATKAAVKMTMRDFSKHVSLVSYGDD 187
Query: 358 NLISVAPSCASWFNGEAIRVTLAEKKVKITD 450
N+I+ + ++W+N I + TD
Sbjct: 188 NVINFSDEVSAWYNMSTIAEAFSTLGFTYTD 218
[197][TOP]
>UniRef100_O70710 Polyprotein n=1 Tax=Infectious flacherie virus RepID=O70710_9VIRU
Length = 3085
Score = 60.5 bits (145), Expect = 9e-08
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
VFKVN G+ +G +T VVNSV N IL+ Y + K+ + F + +IV GDD +IS+
Sbjct: 2757 VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIT-RRRASEFFKLTYIIVMGDDVVISL 2815
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKP---FWELDFLKRKFLKLDT-- 537
F+ I A+ +K+TD S+K+ T E KP F + +FL R F D
Sbjct: 2816 PKQLTEEFDCRKICAEFAKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYP 2873
Query: 538 GVIQAPLDMTAIF 576
+ AP+ A+F
Sbjct: 2874 DITFAPVKTIALF 2886
[198][TOP]
>UniRef100_B3F385 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F385_9VIRU
Length = 139
Score = 60.5 bits (145), Expect = 9e-08
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++N + N + RY Y L P E F+ V L+ YGDDN++ V+P A WF
Sbjct: 59 PSGHPLTVIINGLANSLYNRYCYFILNPNSEVHSFKNNVNLMTYGDDNIMGVSPE-APWF 117
Query: 397 NGEAIRVTLAEKKVKIT 447
N AI L++ V T
Sbjct: 118 NHTAIADALSKIGVTYT 134
[199][TOP]
>UniRef100_A3RKR2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Infectious
flacherie virus RepID=A3RKR2_9VIRU
Length = 639
Score = 60.5 bits (145), Expect = 9e-08
Identities = 48/133 (36%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Frame = +1
Query: 193 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 372
VFKVN G+ +G +T VVNSV N IL+ Y + K+ + F + +IV GDD +IS+
Sbjct: 311 VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIT-RRRASEFFKLTYIIVMGDDVVISL 369
Query: 373 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKP---FWELDFLKRKFLKLDT-- 537
F+ I A+ +K+TD S+K+ T E KP F + +FL R F D
Sbjct: 370 PKQLTEEFDCRKICAEFAKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYP 427
Query: 538 GVIQAPLDMTAIF 576
+ AP+ A+F
Sbjct: 428 DITFAPVKTIALF 440
[200][TOP]
>UniRef100_Q1L028 Nonstructural protein n=1 Tax=Homalodisca coagulata virus-1
RepID=Q1L028_9VIRU
Length = 1795
Score = 60.1 bits (144), Expect = 1e-07
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 4/169 (2%)
Frame = +1
Query: 28 DYSAFDGLLNAQVIECIANMINKLYA-LSGESEVQQAQRYNMLMALVGRYAFVGQKVFKV 204
D+ FD L QV++ ++N L L R + + LV ++
Sbjct: 1526 DFENFDASLLTQVLDAARIVLNDLAGDLPDHQREHDDIRSVLFLDLVHSTHLARDVLYSW 1585
Query: 205 NCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQ---TVCLIVYGDDNLISVA 375
LPSG LT +VNS++ ++ RY K + + Q + L+ YGDD+++S+
Sbjct: 1586 THSLPSGHFLTAIVNSLYVNLIFRYLLAKSSKLTSHIQIDQLCRRMKLVSYGDDHIVSIP 1645
Query: 376 PSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 522
FN + +E + TD + D E++ ++ FLKR F
Sbjct: 1646 SGYEKIFNQSTLPTLFSEIGMTYTDETKSDREVPETRRIEDVTFLKRGF 1694
[201][TOP]
>UniRef100_Q27YG9 RNA-directed RNA polymerase n=1 Tax=Nora virus RepID=POLR_NORAV
Length = 2104
Score = 59.7 bits (143), Expect = 2e-07
Identities = 52/179 (29%), Positives = 79/179 (44%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
+ DY +D L+ QV + + + + + +A+ L A + Y Q V+K
Sbjct: 1842 DADYKNYDKYLHRQVFKAVRKIQRSVIQQVCPDKWDKARAVEELDA-IDTYVVDYQTVYK 1900
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 381
N G SG T + N + N+I YA+ K ++Q V + +GDD + SV+
Sbjct: 1901 TNRGNKSGSYTTTIDNCLANDIYGLYAWVKTTGLRSLWDYRQNVSSVAFGDDIIKSVSDE 1960
Query: 382 CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPL 558
+N R L +T GS KD F L FLKR F KL+ G++ APL
Sbjct: 1961 YKDKYNYCTYRDVLNATGHIMTPGS-KDGEEKPFTSFENLQFLKRGF-KLENGMVLAPL 2017
[202][TOP]
>UniRef100_C1JCT1 Putative nonstructural polyprotein n=1 Tax=Solenopsis invicta virus 3
RepID=C1JCT1_9VIRU
Length = 2580
Score = 58.9 bits (141), Expect = 3e-07
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 12/182 (6%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
+CDY FD + V E +M+ + + + + Y ++ R G +
Sbjct: 1918 SCDYKNFDRTIPKCVFEDFRDMLIQA------NPHMKNEIYACFQTIIDRIQVSGNSILL 1971
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK------CRFQQTVCLIVYGDDNL 363
V+ G+PSG T +NS N+I+I AY + + ++ ++ VC + YGDD +
Sbjct: 1972 VHGGMPSGCVPTAPLNSKVNDIMIYTAYVNILRRADRGDITSYRYYRDLVCRLFYGDDVI 2031
Query: 364 ISVAPSCASWFNGEAIRVTLAEKK-----VKITDGSDKD-APTIESKPFWELDFLKRKFL 525
I+V S A FN + TL+E+ + +TDGS D P E+ L F+ R F
Sbjct: 2032 IAVDDSIADIFNCQ----TLSEEMKILFGMNMTDGSKSDIIPKFET--IETLSFISRFFR 2085
Query: 526 KL 531
L
Sbjct: 2086 PL 2087
[203][TOP]
>UniRef100_B3F393 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F393_9VIRU
Length = 139
Score = 58.9 bits (141), Expect = 3e-07
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++NS+ N + IRY+Y P E F+ V LI YGDDN + ++ + WF
Sbjct: 59 PSGHPLTVIINSLVNSLYIRYSYYLTNPNQEIDTFKDNVALITYGDDNAMGISNN-VPWF 117
Query: 397 NGEAIRVTLA 426
N +I+ L+
Sbjct: 118 NHTSIQQALS 127
[204][TOP]
>UniRef100_Q994U1 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994U1_9VIRU
Length = 174
Score = 58.5 bits (140), Expect = 4e-07
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
E+ + F+Q V L YGDD ++SV FN I LA+ + TD + D
Sbjct: 65 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[205][TOP]
>UniRef100_Q994T9 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994T9_9VIRU
Length = 174
Score = 58.5 bits (140), Expect = 4e-07
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGN 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
E+ + F+Q V L YGDD ++SV FN I LA+ + TD + D
Sbjct: 65 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[206][TOP]
>UniRef100_Q994T5 Polyprotein (Fragment) n=3 Tax=Sacbrood virus RepID=Q994T5_9VIRU
Length = 174
Score = 58.5 bits (140), Expect = 4e-07
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
E+ + F+Q V L YGDD ++SV FN I LA+ + TD + D
Sbjct: 65 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[207][TOP]
>UniRef100_Q994T0 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994T0_9VIRU
Length = 174
Score = 58.5 bits (140), Expect = 4e-07
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAP 471
E+ + F+Q V L YGDD ++SV FN I LA+ + TD ++K
Sbjct: 65 RERGQTWESFKQNVELFCYGDDLIMSVTDKYKDTFNALTISQFLAQYGIVATD-ANKGEE 123
Query: 472 TIESKPFWELDFLKRKF 522
+ FLK F
Sbjct: 124 VVAYTTLLNSTFLKHGF 140
[208][TOP]
>UniRef100_Q994S9 Polyprotein (Fragment) n=2 Tax=Sacbrood virus RepID=Q994S9_9VIRU
Length = 174
Score = 58.5 bits (140), Expect = 4e-07
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 4/137 (2%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAP 471
E+ + F+Q V L YGDD ++SV FN I LA+ + TD ++K
Sbjct: 65 RERGQTWESFKQNVELFCYGDDLIMSVTDKYKDTFNALTISQFLAQYGIVATD-ANKGEE 123
Query: 472 TIESKPFWELDFLKRKF 522
+ FLK F
Sbjct: 124 VVAYTTLLNSTFLKHGF 140
[209][TOP]
>UniRef100_Q80MT2 RNA-dependent RNA polymerase (Fragment) n=5 Tax=Sacbrood virus
RepID=Q80MT2_9VIRU
Length = 186
Score = 58.5 bits (140), Expect = 4e-07
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 9 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 68
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
E+ + F+Q V L YGDD ++SV FN I LA+ + TD + D
Sbjct: 69 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 126
[210][TOP]
>UniRef100_Q80G77 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G77_9SECO
Length = 182
Score = 58.5 bits (140), Expect = 4e-07
Identities = 32/91 (35%), Positives = 53/91 (58%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M++ L +G+ R N++ V R V + +++
Sbjct: 72 NGDYTGFDTATPRVLMMKIADMVSNL---AGDGRENAIVRRNLMKMAVERRILVLRDLYQ 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKL 294
V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 129 VKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[211][TOP]
>UniRef100_Q80G75 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G75_9SECO
Length = 182
Score = 58.5 bits (140), Expect = 4e-07
Identities = 32/91 (35%), Positives = 53/91 (58%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M++ L +G+ R N++ V R V + +++
Sbjct: 72 NGDYTGFDTATPRVLMMKIADMVSNL---AGDGRENAIVRRNLMKMAVKRRILVLRDLYQ 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKL 294
V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 129 VKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[212][TOP]
>UniRef100_Q994T1 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994T1_9VIRU
Length = 174
Score = 57.8 bits (138), Expect = 6e-07
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGS 456
E+ + F+Q V L YGDD ++SV FN I LA+ + TD +
Sbjct: 65 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDTFNALTISQFLAQYGIVATDAN 119
[213][TOP]
>UniRef100_Q80G72 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G72_9SECO
Length = 182
Score = 57.8 bits (138), Expect = 6e-07
Identities = 31/91 (34%), Positives = 54/91 (59%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M+++L +G+ R N++ V R V + +++
Sbjct: 72 NGDYTGFDTATPRVLMMRIADMVSEL---AGDGRENAIVRRNLMKMAVERRILVLRDLYQ 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKL 294
V G PSGFALTV++NSV N+ + +A+R++
Sbjct: 129 VRGGTPSGFALTVIINSVVNQFYLMWAWRRI 159
[214][TOP]
>UniRef100_Q80G71 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G71_9SECO
Length = 182
Score = 57.4 bits (137), Expect = 8e-07
Identities = 32/94 (34%), Positives = 55/94 (58%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M+++L E+ + R N++ V R V + +++
Sbjct: 72 NGDYTGFDTATPRVLMMRIADMVSELACDGRENAIV---RRNLMRMAVERRILVLRDLYQ 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V G PSGFALTV++NSV N+ + +A+RK+ +
Sbjct: 129 VKGGTPSGFALTVIINSVVNQFYLMWAWRKITSR 162
[215][TOP]
>UniRef100_Q994U2 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994U2_9VIRU
Length = 174
Score = 57.0 bits (136), Expect = 1e-06
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + Y +L + V +++ CG PSG +TVV+N++ N + I + L
Sbjct: 5 VNEIEAYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVTWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
E+ + F+Q V L YGDD ++SV FN I LA+ + TD + D
Sbjct: 65 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[216][TOP]
>UniRef100_B3F398 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F398_9VIRU
Length = 137
Score = 57.0 bits (136), Expect = 1e-06
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG +LT N + N IL RYA+ + +P+ + RF++ V L+VYGDDN V+ S WF
Sbjct: 58 PSGISLTTWTNCIINSILQRYAFFR-SPRSARFRFRECVSLMVYGDDNAAGVS-SEVKWF 115
Query: 397 NGEAIRVTLAEKKVKIT 447
N I +L + ++ T
Sbjct: 116 NHTTIATSLQQCGIEYT 132
[217][TOP]
>UniRef100_O36184 Nonstructural polyprotein n=1 Tax=Plautia stali intestine virus
RepID=O36184_9VIRU
Length = 1811
Score = 56.6 bits (135), Expect = 1e-06
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Frame = +1
Query: 28 DYSAFDGLLNAQVI----ECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
D++++D +++ E I + L E + + R+ +L +L+ + K+
Sbjct: 1544 DFASYDSSQEKEILRAACEVIVELCEDLSLPQSERDKHRRVRWVLLESLLNSVHYSYGKL 1603
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR-----FQQTVCLIVYGDDN 360
+ + LPSG LT ++NS+F I + YA+ + K + F ++ YGDD+
Sbjct: 1604 YYWSKSLPSGHFLTSIINSIFVNIAMCYAFVESQEKGNRSEENIRVFFNDFSIVTYGDDH 1663
Query: 361 LISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF---LKL 531
+I V FN + L + T I+S+ E+ F+KR F +L
Sbjct: 1664 VIGVPEKYVEDFNQLTLPKLLKTLGLDYTMEDKDRICDIKSRKLEEVTFIKRSFRYVKEL 1723
Query: 532 DTGVIQAPLDMTAI 573
D + APLD+ +I
Sbjct: 1724 DRWL--APLDLNSI 1735
[218][TOP]
>UniRef100_Q80G73 RNA dependent RNA polymerase (Fragment) n=3 Tax=Strawberry mottle
virus RepID=Q80G73_9SECO
Length = 182
Score = 56.2 bits (134), Expect = 2e-06
Identities = 32/91 (35%), Positives = 53/91 (58%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M++ L E+ + R N++ V R V + +++
Sbjct: 72 NGDYTGFDTATPRVLMMRIADMVSDLACDGRENAIV---RRNLMKMAVERRILVLRDLYQ 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKL 294
V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 129 VKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[219][TOP]
>UniRef100_Q80G70 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G70_9SECO
Length = 182
Score = 56.2 bits (134), Expect = 2e-06
Identities = 32/91 (35%), Positives = 53/91 (58%)
Frame = +1
Query: 22 NCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFK 201
N DY+ FD ++ IA+M++ L E+ + R N++ V R V + +++
Sbjct: 72 NGDYTGFDTATPRVLMMRIADMVSDLACDGRENAIV---RRNLMRMAVERRILVLRDLYQ 128
Query: 202 VNCGLPSGFALTVVVNSVFNEILIRYAYRKL 294
V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 129 VKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[220][TOP]
>UniRef100_B3F392 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F392_9VIRU
Length = 139
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +1
Query: 217 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 396
PSG LTV++N + N + +RYAY L F+ V L+ YGDDN+++V SWF
Sbjct: 59 PSGHPLTVIINGLVNSLYMRYAYTVLNEYGHCNDFKSNVNLMTYGDDNILNVNKD-ISWF 117
Query: 397 NGEAIRVTLAE 429
N +I LAE
Sbjct: 118 NHTSISQALAE 128
[221][TOP]
>UniRef100_Q80MT3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Sacbrood virus
RepID=Q80MT3_9VIRU
Length = 186
Score = 55.1 bits (131), Expect = 4e-06
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + +L + V +++ CG PSG +TVV+N++ N + I A+ L
Sbjct: 12 VNEIEANTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGS 71
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 465
E+ + F+Q V L YGDD ++SV FN I LA+ + TD + D
Sbjct: 72 KERGQTWESFKQNVELFCYGDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 129
[222][TOP]
>UniRef100_A5HB92 Non-structural protein n=1 Tax=Solenopsis invicta virus 2
RepID=A5HB92_9VIRU
Length = 2153
Score = 55.1 bits (131), Expect = 4e-06
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Frame = +1
Query: 16 AINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKV 195
A++ D S +DG L AQ+ + ++I + + + V ++ ++ + +
Sbjct: 1889 AVDFDVSNWDGFLFAQLFYAVLDIIKAIMNVKKGTPVDYILT-SIFFDVMNCFIQFLNII 1947
Query: 196 FKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQ---QTVCLIVYGDDNLI 366
++ + G+ SGF T VN++ + +LI Y L K F+ + V I+YGDD L+
Sbjct: 1948 YQKSRGIISGFPGTAEVNTLAHILLIVCIYLMLVAKTIWDSFEMFLRMVSAILYGDDILL 2007
Query: 367 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVI 546
++ FNG+ I+ +T + K + +E+KP + FLK + +L G
Sbjct: 2008 TIHDDILHLFNGKTIQREYERLGYTVTSAT-KSSEIVEAKPLSQCQFLKSSWRQLLPGYY 2066
Query: 547 QAPLDMTAIF 576
LD+ +
Sbjct: 2067 IRVLDLEVAY 2076
[223][TOP]
>UniRef100_Q994S8 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994S8_9VIRU
Length = 174
Score = 54.7 bits (130), Expect = 5e-06
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = +1
Query: 124 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 303
V + + + +L + V +++ CG PSG TVV+N++ N + I A+ L
Sbjct: 5 VNEIEAHTLLRECLNSVHLVSNTLYQQKCGSPSGAPTTVVINTLVNILYIFVAWETLVGS 64
Query: 304 PEKCR----FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGS 456
E+ + F+Q V L YGDD ++SV FN I LA+ + TD +
Sbjct: 65 RERGQTWESFKQNVELFCYGDDLIMSVTDKYKDTFNALTISQFLAQYGIVATDAN 119
[224][TOP]
>UniRef100_Q7T7T5 Polyprotein n=1 Tax=Heterosigma akashiwo RNA virus SOG263
RepID=Q7T7T5_HARNA
Length = 2581
Score = 53.9 bits (128), Expect = 9e-06
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 1/171 (0%)
Frame = +1
Query: 7 TNEAINCDYSAFDGLLNAQVIECIANMINKLYALSG-ESEVQQAQRYNMLMALVGRYAFV 183
T I DYS+FD NA + C ++ L S S+V + ++ +L +
Sbjct: 1431 TETVIAGDYSSFDMSHNADAVRCAMQVLLDLIDESSLYSDVDKLAARTLVESLGQSFLAF 1490
Query: 184 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNL 363
+V + SG LT ++S N+I +R ++ + +P F+ V LIVYGDDN
Sbjct: 1491 DGTWMQVIGWVMSGVPLTAELSSTLNQIYMRVVWKVVTQRPIS-DFRSHVALIVYGDDNN 1549
Query: 364 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKR 516
+V +N +++ VT+ + ++ T+ D I + + +FLKR
Sbjct: 1550 AAVRDE--PRYNFQSVAVTMGKFRMTYTNTDKNDEMHIYQR-LEDAEFLKR 1597