[UP]
[1][TOP] >UniRef100_C6TAR7 Pseudouridylate synthase n=1 Tax=Glycine max RepID=C6TAR7_SOYBN Length = 370 Score = 134 bits (336), Expect = 6e-30 Identities = 64/71 (90%), Positives = 69/71 (97%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLT+PDVERILNA+ V AASPMAPACGLY Sbjct: 300 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPACGLY 359 Query: 385 LGKVKYDLPSS 353 LG+VKYDLP++ Sbjct: 360 LGEVKYDLPTT 370 [2][TOP] >UniRef100_Q1SKV8 Pseudouridylate synthase n=1 Tax=Medicago truncatula RepID=Q1SKV8_MEDTR Length = 361 Score = 129 bits (325), Expect = 1e-28 Identities = 63/71 (88%), Positives = 66/71 (92%) Frame = -1 Query: 568 FHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGL 389 +HRCLVVTARARAFLYHQVRLLVGVLK VGTGN+TV DVERILNAK V A SPMAPACGL Sbjct: 291 YHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTATSPMAPACGL 350 Query: 388 YLGKVKYDLPS 356 YLG+VKYDLPS Sbjct: 351 YLGEVKYDLPS 361 [3][TOP] >UniRef100_A7QCG7 Pseudouridylate synthase n=1 Tax=Vitis vinifera RepID=A7QCG7_VITVI Length = 380 Score = 121 bits (303), Expect = 4e-26 Identities = 58/69 (84%), Positives = 62/69 (89%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC +VTARAR+FLYHQVRLLVGV+K VGTG+LTV DVERILNAK V AASPMAPACGLY Sbjct: 312 HRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPACGLY 371 Query: 385 LGKVKYDLP 359 LG V YDLP Sbjct: 372 LGNVNYDLP 380 [4][TOP] >UniRef100_B9N771 Pseudouridylate synthase n=1 Tax=Populus trichocarpa RepID=B9N771_POPTR Length = 326 Score = 116 bits (290), Expect = 1e-24 Identities = 54/67 (80%), Positives = 63/67 (94%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC V+TAR+R+FLYHQVRLLVGVLK+VGTG+LTV DVERILNA+++ AASPMAPACGLY Sbjct: 258 HRCYVITARSRSFLYHQVRLLVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLY 317 Query: 385 LGKVKYD 365 LG VKY+ Sbjct: 318 LGHVKYE 324 [5][TOP] >UniRef100_B9SKD4 Pseudouridylate synthase n=1 Tax=Ricinus communis RepID=B9SKD4_RICCO Length = 372 Score = 115 bits (287), Expect = 3e-24 Identities = 57/69 (82%), Positives = 62/69 (89%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTARAR+FLYHQVRLLVGVLK+VG G+LT DVERIL+AK+V AASPMAPA GLY Sbjct: 304 HRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAASPMAPARGLY 363 Query: 385 LGKVKYDLP 359 LG VKYDLP Sbjct: 364 LGHVKYDLP 372 [6][TOP] >UniRef100_Q2QWH9 Pseudouridylate synthase n=1 Tax=Oryza sativa Japonica Group RepID=Q2QWH9_ORYSJ Length = 391 Score = 112 bits (280), Expect = 2e-23 Identities = 54/68 (79%), Positives = 59/68 (86%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTARAR+FLYHQVRL+VG+LK+VGTG+LT DVERILN K V AA PMAPACGLY Sbjct: 322 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPMAPACGLY 381 Query: 385 LGKVKYDL 362 L VKYDL Sbjct: 382 LANVKYDL 389 [7][TOP] >UniRef100_B8BNJ9 Pseudouridylate synthase n=1 Tax=Oryza sativa Indica Group RepID=B8BNJ9_ORYSI Length = 391 Score = 112 bits (280), Expect = 2e-23 Identities = 54/68 (79%), Positives = 59/68 (86%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTARAR+FLYHQVRL+VG+LK+VGTG+LT DVERILN K V AA PMAPACGLY Sbjct: 322 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPMAPACGLY 381 Query: 385 LGKVKYDL 362 L VKYDL Sbjct: 382 LANVKYDL 389 [8][TOP] >UniRef100_C0HIQ3 Pseudouridylate synthase n=1 Tax=Zea mays RepID=C0HIQ3_MAIZE Length = 222 Score = 108 bits (271), Expect = 2e-22 Identities = 52/68 (76%), Positives = 59/68 (86%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTARAR+FLYHQVRL+VG+LK+VGTG+LT DVERIL+AK V AA MAP+CGLY Sbjct: 153 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPSCGLY 212 Query: 385 LGKVKYDL 362 L VKYDL Sbjct: 213 LANVKYDL 220 [9][TOP] >UniRef100_B6SIS1 Pseudouridylate synthase n=1 Tax=Zea mays RepID=B6SIS1_MAIZE Length = 386 Score = 108 bits (271), Expect = 2e-22 Identities = 52/68 (76%), Positives = 59/68 (86%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTARAR+FLYHQVRL+VG+LK+VGTG+LT DVERIL+AK V AA MAP+CGLY Sbjct: 317 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSMAPSCGLY 376 Query: 385 LGKVKYDL 362 L VKYDL Sbjct: 377 LANVKYDL 384 [10][TOP] >UniRef100_UPI000034F4DB tRNA pseudouridine synthase family protein n=1 Tax=Arabidopsis thaliana RepID=UPI000034F4DB Length = 372 Score = 107 bits (267), Expect = 6e-22 Identities = 51/69 (73%), Positives = 57/69 (82%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTAR+R FLYHQVRL+VG LK VGTG LTV DVERIL AK V+AA PMAPA GLY Sbjct: 304 HRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLY 363 Query: 385 LGKVKYDLP 359 L +V+Y+ P Sbjct: 364 LARVRYEFP 372 [11][TOP] >UniRef100_Q6NKP7 Pseudouridylate synthase n=2 Tax=Arabidopsis thaliana RepID=Q6NKP7_ARATH Length = 372 Score = 107 bits (267), Expect = 6e-22 Identities = 51/69 (73%), Positives = 57/69 (82%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTAR+R FLYHQVRL+VG LK VGTG LTV DVERIL AK V+AA PMAPA GLY Sbjct: 304 HRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLY 363 Query: 385 LGKVKYDLP 359 L +V+Y+ P Sbjct: 364 LARVRYEFP 372 [12][TOP] >UniRef100_C5YTE9 Pseudouridylate synthase n=1 Tax=Sorghum bicolor RepID=C5YTE9_SORBI Length = 387 Score = 105 bits (262), Expect = 2e-21 Identities = 52/68 (76%), Positives = 58/68 (85%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 HRC VVTARAR+FLYHQVRL+VG+LK+VGTG+LT DVERIL+AK V AA MAPA GLY Sbjct: 318 HRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPRMAPAYGLY 377 Query: 385 LGKVKYDL 362 L VKYDL Sbjct: 378 LANVKYDL 385 [13][TOP] >UniRef100_A9SK13 Pseudouridylate synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SK13_PHYPA Length = 331 Score = 100 bits (249), Expect = 8e-20 Identities = 47/66 (71%), Positives = 55/66 (83%) Frame = -1 Query: 562 RCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYL 383 RC V+TARAR+FLYHQVRL+VG LKAVG G+LTV DV+RIL+A+ + A MAPACGLYL Sbjct: 250 RCFVITARARSFLYHQVRLMVGTLKAVGCGDLTVQDVQRILDARTITQAPAMAPACGLYL 309 Query: 382 GKVKYD 365 VKYD Sbjct: 310 ANVKYD 315 [14][TOP] >UniRef100_A4S4E5 Pseudouridylate synthase n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S4E5_OSTLU Length = 308 Score = 73.2 bits (178), Expect = 1e-11 Identities = 37/61 (60%), Positives = 43/61 (70%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A +FLYHQVRLL G LKAVG +LTV DV+ +L AK+VA A MAPA GLYL V Sbjct: 231 IAVAAPSFLYHQVRLLAGALKAVGANDLTVKDVQELLEAKDVARAPQMAPAHGLYLADVA 290 Query: 370 Y 368 Y Sbjct: 291 Y 291 [15][TOP] >UniRef100_Q00Z96 Pseudouridylate synthase n=1 Tax=Ostreococcus tauri RepID=Q00Z96_OSTTA Length = 338 Score = 72.8 bits (177), Expect = 2e-11 Identities = 38/61 (62%), Positives = 44/61 (72%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 V A +FLYHQVRLLVG LK+VG G+LTV DV +L AK+V+ A MAPA GLYL V Sbjct: 251 VRVEAPSFLYHQVRLLVGALKSVGAGDLTVDDVRELLEAKDVSQAPQMAPAHGLYLMDVG 310 Query: 370 Y 368 Y Sbjct: 311 Y 311 [16][TOP] >UniRef100_C1N0D6 Pseudouridylate synthase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1N0D6_9CHLO Length = 390 Score = 72.0 bits (175), Expect = 3e-11 Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 1/65 (1%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAA-ASPMAPACGLYLG 380 +V+TARA +FLYHQVRL+VG L+AVG G L+ DV +L A+ A PMAPA GLYL Sbjct: 286 IVITARAPSFLYHQVRLMVGTLRAVGAGELSPDDVTDLLEGTTDASRAPPMAPAHGLYLE 345 Query: 379 KVKYD 365 +V YD Sbjct: 346 RVHYD 350 [17][TOP] >UniRef100_B6IPI0 tRNA pseudouridine synthase A n=1 Tax=Rhodospirillum centenum SW RepID=TRUA_RHOCS Length = 245 Score = 68.2 bits (165), Expect = 4e-10 Identities = 34/61 (55%), Positives = 41/61 (67%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + ARAR+FL+HQVR +VG LK VG G T DV R L A+N +AA P APA GLY + Sbjct: 185 IVARARSFLHHQVRNMVGTLKLVGEGRWTADDVSRALAARNRSAAGPTAPAAGLYFTEAW 244 Query: 370 Y 368 Y Sbjct: 245 Y 245 [18][TOP] >UniRef100_C1FJS9 Pseudouridylate synthase n=1 Tax=Micromonas sp. RCC299 RepID=C1FJS9_9CHLO Length = 452 Score = 66.2 bits (160), Expect = 2e-09 Identities = 34/64 (53%), Positives = 42/64 (65%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +VVTA +FLYHQVRL+V L+AVG G + V +L A+ A MAPA GLYLG+ Sbjct: 371 VVVTAVGPSFLYHQVRLMVATLRAVGAGEIDPASVPALLAARTPRAVPAMAPAHGLYLGR 430 Query: 376 VKYD 365 V YD Sbjct: 431 VHYD 434 [19][TOP] >UniRef100_C7JEJ1 tRNA pseudouridine synthase A TruA n=8 Tax=Acetobacter pasteurianus RepID=C7JEJ1_ACEP3 Length = 262 Score = 61.2 bits (147), Expect = 5e-08 Identities = 33/64 (51%), Positives = 40/64 (62%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 ++V A+AR+FL+HQVR +VG LK VG G V L A+N AA P AP GLYL Sbjct: 194 VIVFAKARSFLHHQVRNMVGTLKLVGIGAWQPERVAEALEARNRCAAGPTAPPEGLYLNG 253 Query: 376 VKYD 365 V YD Sbjct: 254 VGYD 257 [20][TOP] >UniRef100_A7HPQ3 tRNA pseudouridine synthase A n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=TRUA_PARL1 Length = 246 Score = 60.8 bits (146), Expect = 7e-08 Identities = 32/62 (51%), Positives = 42/62 (67%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + RAR+FL++QVR VG LK VG G+ T VE+ L AK+ AA P+AP GLYL +V Sbjct: 185 IVCRARSFLHNQVRSFVGTLKMVGDGSWTRRKVEKALAAKDRAACGPVAPPDGLYLLQVD 244 Query: 370 YD 365 Y+ Sbjct: 245 YE 246 [21][TOP] >UniRef100_A9HB17 Pseudouridylate synthase n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HB17_9RHOB Length = 256 Score = 60.5 bits (145), Expect = 9e-08 Identities = 31/61 (50%), Positives = 39/61 (63%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VG G+ T DV R L ++ AA P+ P GLYL V YD Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPPYGLYLAHVVYDR 251 Query: 361 P 359 P Sbjct: 252 P 252 [22][TOP] >UniRef100_Q11LD0 tRNA pseudouridine synthase A n=1 Tax=Chelativorans sp. BNC1 RepID=TRUA_MESSB Length = 247 Score = 60.5 bits (145), Expect = 9e-08 Identities = 31/61 (50%), Positives = 40/61 (65%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A AR+FL++QVR LVG LK VG G T D + L A++ AA P+AP GLYL +V Sbjct: 187 IHASARSFLHNQVRSLVGTLKKVGEGGWTADDAQAALQARDRAACGPVAPPQGLYLVRVD 246 Query: 370 Y 368 Y Sbjct: 247 Y 247 [23][TOP] >UniRef100_A8TUC9 Pseudouridylate synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TUC9_9PROT Length = 248 Score = 60.1 bits (144), Expect = 1e-07 Identities = 33/63 (52%), Positives = 40/63 (63%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +VV ARAR+FL+HQVR +VG L+ VG G DV L A++ AA P APA GL L Sbjct: 184 IVVEARARSFLHHQVRNMVGTLRLVGEGKWQPDDVTAALKARDRVAAGPTAPADGLTLTA 243 Query: 376 VKY 368 V Y Sbjct: 244 VGY 246 [24][TOP] >UniRef100_Q1GE00 tRNA pseudouridine synthase A n=1 Tax=Ruegeria sp. TM1040 RepID=TRUA_SILST Length = 259 Score = 60.1 bits (144), Expect = 1e-07 Identities = 31/61 (50%), Positives = 40/61 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VGTG + DV+ L AK+ AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPGHGLYLARVGYPD 251 Query: 361 P 359 P Sbjct: 252 P 252 [25][TOP] >UniRef100_Q168C1 tRNA pseudouridine synthase A n=1 Tax=Roseobacter denitrificans OCh 114 RepID=TRUA_ROSDO Length = 260 Score = 60.1 bits (144), Expect = 1e-07 Identities = 31/61 (50%), Positives = 39/61 (63%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VG G+ T DV R L ++ AA P+ P GLYL V YD Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSSTPQDVARALALRDRAACGPVCPPHGLYLAHVVYDR 251 Query: 361 P 359 P Sbjct: 252 P 252 [26][TOP] >UniRef100_Q2GF33 tRNA pseudouridine synthase A n=1 Tax=Neorickettsia sennetsu str. Miyayama RepID=TRUA_NEOSM Length = 243 Score = 59.7 bits (143), Expect = 2e-07 Identities = 31/63 (49%), Positives = 41/63 (65%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 ++ A A++FL+HQVR++VG L A+ +G L V IL+ KN A P AP CGLYL K Sbjct: 183 MIFHASAKSFLHHQVRIMVGTLVAIASGKLM--SVTEILSKKNRRYAGPTAPPCGLYLLK 240 Query: 376 VKY 368 V Y Sbjct: 241 VDY 243 [27][TOP] >UniRef100_C2KI30 Pseudouridylate synthase n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KI30_LEUMC Length = 255 Score = 59.3 bits (142), Expect = 2e-07 Identities = 28/64 (43%), Positives = 41/64 (64%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +V T AFLY+Q+R++VGVL +GTG V D+ R++ K+ A APA GLYL + Sbjct: 192 IVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQARYTAPASGLYLDE 251 Query: 376 VKYD 365 + Y+ Sbjct: 252 IDYN 255 [28][TOP] >UniRef100_A8S1C6 Pseudouridylate synthase n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1C6_9CLOT Length = 247 Score = 59.3 bits (142), Expect = 2e-07 Identities = 29/65 (44%), Positives = 41/65 (63%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 + + FLY+ VR++ G L AVGTG++ D+ IL AK+ AA P APA GL L + Sbjct: 183 ITIRVTGNGFLYNMVRIIAGTLMAVGTGHIQAEDMPSILEAKDRRAAGPTAPARGLTLIE 242 Query: 376 VKYDL 362 +KY+L Sbjct: 243 MKYEL 247 [29][TOP] >UniRef100_Q03ZL3 tRNA pseudouridine synthase A n=1 Tax=Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 RepID=TRUA_LEUMM Length = 255 Score = 59.3 bits (142), Expect = 2e-07 Identities = 28/64 (43%), Positives = 41/64 (64%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +V T AFLY+Q+R++VGVL +GTG V D+ R++ K+ A APA GLYL + Sbjct: 192 IVFTFEGNAFLYNQIRIMVGVLLEIGTGKRPVHDIVRLIEVKDREQARYTAPASGLYLDE 251 Query: 376 VKYD 365 + Y+ Sbjct: 252 IDYN 255 [30][TOP] >UniRef100_B4W657 Pseudouridylate synthase n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W657_9CAUL Length = 247 Score = 58.9 bits (141), Expect = 3e-07 Identities = 29/59 (49%), Positives = 38/59 (64%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYD 365 +AR+FL+ QVR + G L VG G T DV+ L AK+ A P+AP+ GLYL V+YD Sbjct: 189 QARSFLHRQVRSMAGTLVEVGLGRWTAHDVKAALEAKDRARCGPVAPSAGLYLSGVRYD 247 [31][TOP] >UniRef100_A7IKI9 tRNA pseudouridine synthase A n=1 Tax=Xanthobacter autotrophicus Py2 RepID=TRUA_XANP2 Length = 245 Score = 58.9 bits (141), Expect = 3e-07 Identities = 30/61 (49%), Positives = 36/61 (59%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 V AR+FL+HQVR +VG L VG G + D+E L A + PMAPA GLYL V Sbjct: 185 VITSARSFLHHQVRSMVGSLMRVGEGRWSADDLEAALKAADRTRCGPMAPAAGLYLAAVS 244 Query: 370 Y 368 Y Sbjct: 245 Y 245 [32][TOP] >UniRef100_A8IQL3 tRNA pseudouridine synthase A n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=TRUA_AZOC5 Length = 258 Score = 58.9 bits (141), Expect = 3e-07 Identities = 29/61 (47%), Positives = 37/61 (60%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + AR+FL+HQVR +VG L VG G + D+ L A++ PMAPACGLYL V Sbjct: 185 IVTSARSFLHHQVRSMVGSLIRVGEGRWSADDLADALAARDRRRCGPMAPACGLYLAAVS 244 Query: 370 Y 368 Y Sbjct: 245 Y 245 [33][TOP] >UniRef100_C6V3Q0 Pseudouridylate synthase n=1 Tax=Neorickettsia risticii str. Illinois RepID=C6V3Q0_NEORI Length = 243 Score = 58.5 bits (140), Expect = 3e-07 Identities = 29/63 (46%), Positives = 41/63 (65%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 ++ A A++FL+HQVR++VG L A+ +G L IL+ +N A P AP+CGLYL K Sbjct: 183 IIFHASAKSFLHHQVRIMVGTLVAIASGKLV--SATEILSKRNRCYAGPTAPSCGLYLLK 240 Query: 376 VKY 368 V Y Sbjct: 241 VDY 243 [34][TOP] >UniRef100_A3SLU7 Pseudouridylate synthase n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SLU7_9RHOB Length = 258 Score = 58.5 bits (140), Expect = 3e-07 Identities = 29/58 (50%), Positives = 40/58 (68%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G + DV+ L+A+N AA P++P GLYL V+Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGRWSPDDVKAALDARNRAACGPVSPPHGLYLAGVEY 249 [35][TOP] >UniRef100_C6QBF0 Pseudouridylate synthase n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QBF0_9RHIZ Length = 246 Score = 58.2 bits (139), Expect = 4e-07 Identities = 31/64 (48%), Positives = 39/64 (60%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +V AR+FL+HQVR +VG LK VG G + D+ L A N A P+APA GLYL Sbjct: 183 IVCRVSARSFLHHQVRSMVGSLKLVGEGKWSRADLASALAAANREACGPVAPAAGLYLVG 242 Query: 376 VKYD 365 V Y+ Sbjct: 243 VDYE 246 [36][TOP] >UniRef100_A6C4N8 Pseudouridylate synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4N8_9PLAN Length = 267 Score = 58.2 bits (139), Expect = 4e-07 Identities = 30/63 (47%), Positives = 38/63 (60%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 + V A FLY+ VR +VG L VG G T DV++IL + + A P APACGLYL + Sbjct: 203 ITVDVVADGFLYNMVRAIVGTLLDVGVGRWTSNDVQKILTGMDRSQAGPTAPACGLYLVQ 262 Query: 376 VKY 368 V Y Sbjct: 263 VDY 265 [37][TOP] >UniRef100_A3SF68 Pseudouridylate synthase n=2 Tax=Sulfitobacter RepID=A3SF68_9RHOB Length = 262 Score = 58.2 bits (139), Expect = 4e-07 Identities = 28/59 (47%), Positives = 41/59 (69%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYD 365 RAR+FL++QVR +VG L+ VG G+ DV+++L A++ A P+AP GLYL V Y+ Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSFAPDDVKQMLAARDRQACGPVAPPQGLYLSHVTYE 250 [38][TOP] >UniRef100_A5FVK4 tRNA pseudouridine synthase A n=1 Tax=Acidiphilium cryptum JF-5 RepID=TRUA_ACICJ Length = 255 Score = 58.2 bits (139), Expect = 4e-07 Identities = 31/65 (47%), Positives = 42/65 (64%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +V+ A AR+FL+HQVR +VG LK VG G V V L A++ +AA P AP GL L Sbjct: 185 VVIEAEARSFLHHQVRNMVGTLKLVGEGRWRVGRVAEALAARDRSAAGPTAPPDGLVLVA 244 Query: 376 VKYDL 362 V+Y++ Sbjct: 245 VRYEV 249 [39][TOP] >UniRef100_D0DT05 tRNA pseudouridine synthase A n=1 Tax=Lactobacillus fermentum 28-3-CHN RepID=D0DT05_LACFE Length = 258 Score = 57.8 bits (138), Expect = 6e-07 Identities = 29/59 (49%), Positives = 38/59 (64%) Frame = -1 Query: 529 FLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDLPSS 353 FLY+QVR++V L +G G V DV R++ AKN A APA GLYL +V YD P++ Sbjct: 196 FLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVTYDSPAN 254 [40][TOP] >UniRef100_C9CZP8 tRNA pseudouridine synthase A n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CZP8_9RHOB Length = 278 Score = 57.8 bits (138), Expect = 6e-07 Identities = 31/61 (50%), Positives = 38/61 (62%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VG G T DV L AK+ AA P+ P GLYL +V Y Sbjct: 211 RARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALAAKDRAACGPVCPGHGLYLARVGYPD 270 Query: 361 P 359 P Sbjct: 271 P 271 [41][TOP] >UniRef100_C0WZT7 Pseudouridylate synthase n=1 Tax=Lactobacillus fermentum ATCC 14931 RepID=C0WZT7_LACFE Length = 258 Score = 57.8 bits (138), Expect = 6e-07 Identities = 29/59 (49%), Positives = 38/59 (64%) Frame = -1 Query: 529 FLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDLPSS 353 FLY+QVR++V L +G G V DV R++ AKN A APA GLYL +V YD P++ Sbjct: 196 FLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVTYDSPAN 254 [42][TOP] >UniRef100_Q2WAT0 tRNA pseudouridine synthase A n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=TRUA_MAGSA Length = 256 Score = 57.8 bits (138), Expect = 6e-07 Identities = 28/61 (45%), Positives = 38/61 (62%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A AR+FL+HQVR +VG LK VG G + D+ ++L A++ P APA GL L V Sbjct: 185 IVAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMAKVLEARDRTKGGPTAPAAGLVLTGVS 244 Query: 370 Y 368 Y Sbjct: 245 Y 245 [43][TOP] >UniRef100_B2GDT8 tRNA pseudouridine synthase A n=1 Tax=Lactobacillus fermentum IFO 3956 RepID=TRUA_LACF3 Length = 258 Score = 57.8 bits (138), Expect = 6e-07 Identities = 29/59 (49%), Positives = 38/59 (64%) Frame = -1 Query: 529 FLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDLPSS 353 FLY+QVR++V L +G G V DV R++ AKN A APA GLYL +V YD P++ Sbjct: 196 FLYNQVRIMVAFLLEIGNGRRPVDDVMRVMKAKNRDLARGTAPASGLYLVEVTYDSPAN 254 [44][TOP] >UniRef100_A1UUB6 tRNA pseudouridine synthase A n=1 Tax=Bartonella bacilliformis KC583 RepID=TRUA_BARBK Length = 247 Score = 57.4 bits (137), Expect = 7e-07 Identities = 29/59 (49%), Positives = 37/59 (62%) Frame = -1 Query: 544 ARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 ARAR+FL+HQ+R G L VG G T D+E L+AK+ A +AP GLYL +V Y Sbjct: 189 ARARSFLHHQIRSFAGSLMEVGIGRWTAQDLEEALHAKDRARCGMVAPPSGLYLTQVDY 247 [45][TOP] >UniRef100_Q0G0U5 Pseudouridylate synthase n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G0U5_9RHIZ Length = 261 Score = 57.0 bits (136), Expect = 1e-06 Identities = 27/61 (44%), Positives = 37/61 (60%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A A++FL++Q+R G LK VG G T DV L AK+ A P+AP GLYL ++ Sbjct: 186 IVAMAQSFLHNQIRSFAGTLKLVGEGRWTATDVSEALKAKDRTACGPVAPPYGLYLTAIE 245 Query: 370 Y 368 Y Sbjct: 246 Y 246 [46][TOP] >UniRef100_A9ILJ7 tRNA pseudouridine synthase A n=1 Tax=Bartonella tribocorum CIP 105476 RepID=TRUA_BART1 Length = 247 Score = 57.0 bits (136), Expect = 1e-06 Identities = 28/63 (44%), Positives = 39/63 (61%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 + + A+AR+FL+HQ+R G L VG G T D+E L+AK+ +AP GLYL K Sbjct: 185 IFIYAKARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKRCGVVAPPSGLYLTK 244 Query: 376 VKY 368 V+Y Sbjct: 245 VEY 247 [47][TOP] >UniRef100_A9EAT3 Pseudouridylate synthase n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9EAT3_9RHOB Length = 257 Score = 56.6 bits (135), Expect = 1e-06 Identities = 29/58 (50%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G+ +V D+ L AK+ AA P+ P GLYL V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSWSVADMGAALAAKDRAACGPVCPPHGLYLAHVSY 249 [48][TOP] >UniRef100_UPI0001BB4A23 tRNA pseudouridine synthase A n=1 Tax=alpha proteobacterium HIMB114 RepID=UPI0001BB4A23 Length = 245 Score = 56.2 bits (134), Expect = 2e-06 Identities = 26/63 (41%), Positives = 40/63 (63%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 ++ ++R+FL HQVR +VG +K VG ++ D++ L +KN + APACGLYL Sbjct: 183 IIYIVKSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLYLEN 242 Query: 376 VKY 368 V+Y Sbjct: 243 VEY 245 [49][TOP] >UniRef100_B9NQ81 Pseudouridylate synthase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NQ81_9RHOB Length = 255 Score = 56.2 bits (134), Expect = 2e-06 Identities = 30/61 (49%), Positives = 37/61 (60%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VG G T DV L A + AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWTPEDVRDALEAADRAACGPVCPPQGLYLARVGYPE 251 Query: 361 P 359 P Sbjct: 252 P 252 [50][TOP] >UniRef100_B7RLD9 Pseudouridylate synthase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RLD9_9RHOB Length = 256 Score = 56.2 bits (134), Expect = 2e-06 Identities = 28/58 (48%), Positives = 40/58 (68%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G+LT DV+ + +A++ A P++P GLYL V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSLTPDDVKVMRDARDRQACGPVSPPHGLYLAHVDY 249 [51][TOP] >UniRef100_B6B0L0 Pseudouridylate synthase n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B0L0_9RHOB Length = 259 Score = 56.2 bits (134), Expect = 2e-06 Identities = 29/60 (48%), Positives = 39/60 (65%) Frame = -1 Query: 547 TARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 T RAR+FL++QVR VG L +VG+G T DV+ L A++ A P++P GLYL V Y Sbjct: 190 TVRARSFLHNQVRSFVGTLGSVGSGAWTPDDVKSALQAQDRQACGPVSPPHGLYLAHVTY 249 [52][TOP] >UniRef100_B5K9Z5 Pseudouridylate synthase n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K9Z5_9RHOB Length = 256 Score = 56.2 bits (134), Expect = 2e-06 Identities = 29/58 (50%), Positives = 36/58 (62%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G T DV LNA++ A P+ P GLYL V Y Sbjct: 193 RARSFLHNQVRSFVGTLERVGAGAWTPDDVTAALNARDRTACGPVCPPHGLYLAGVSY 250 [53][TOP] >UniRef100_B5JAK6 Pseudouridylate synthase n=1 Tax=Octadecabacter antarcticus 307 RepID=B5JAK6_9RHOB Length = 256 Score = 56.2 bits (134), Expect = 2e-06 Identities = 29/58 (50%), Positives = 36/58 (62%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G T DV LNA++ A P+ P GLYL V Y Sbjct: 193 RARSFLHNQVRSFVGTLERVGAGAWTRDDVSAALNARDRTACGPVCPPHGLYLASVGY 250 [54][TOP] >UniRef100_Q04G54 tRNA pseudouridine synthase A n=1 Tax=Oenococcus oeni PSU-1 RepID=TRUA_OENOB Length = 252 Score = 56.2 bits (134), Expect = 2e-06 Identities = 28/64 (43%), Positives = 40/64 (62%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 L+ T AFLY+Q+R++VGVL +G G V D+ R++ K+ A APA GLYL + Sbjct: 186 LLFTFEGNAFLYNQIRIMVGVLLEIGNGTRPVHDIIRLIKIKDRQQARFTAPASGLYLDE 245 Query: 376 VKYD 365 V Y+ Sbjct: 246 VYYE 249 [55][TOP] >UniRef100_Q6G547 tRNA pseudouridine synthase A n=1 Tax=Bartonella henselae RepID=TRUA_BARHE Length = 247 Score = 56.2 bits (134), Expect = 2e-06 Identities = 28/59 (47%), Positives = 37/59 (62%) Frame = -1 Query: 544 ARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 A+AR+FL+HQ+R G L VG G T D+E L+AK+ +AP GLYL KV+Y Sbjct: 189 AQARSFLHHQIRSFAGSLMEVGIGRWTTQDLEAALHAKDRTRCGMVAPPSGLYLTKVEY 247 [56][TOP] >UniRef100_A9HKQ8 Pseudouridylate synthase n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HKQ8_GLUDA Length = 258 Score = 55.8 bits (133), Expect = 2e-06 Identities = 35/65 (53%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPD-VERILNAKNVAAASPMAPACGLYLG 380 +V+ A AR+FL+HQVR +VG LK VG G L PD V L A + AA P AP GLYL Sbjct: 191 IVIEAEARSFLHHQVRNMVGTLKLVGEG-LWAPDRVAAALAACDRRAAGPTAPPDGLYLT 249 Query: 379 KVKYD 365 V YD Sbjct: 250 GVGYD 254 [57][TOP] >UniRef100_D0CXH5 tRNA pseudouridine synthase A n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CXH5_9RHOB Length = 255 Score = 55.8 bits (133), Expect = 2e-06 Identities = 30/61 (49%), Positives = 37/61 (60%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VG G T DV L A + AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWTPQDVRDALEATDRAACGPVCPPQGLYLARVGYPD 251 Query: 361 P 359 P Sbjct: 252 P 252 [58][TOP] >UniRef100_A6E3H1 Pseudouridylate synthase n=1 Tax=Roseovarius sp. TM1035 RepID=A6E3H1_9RHOB Length = 258 Score = 55.8 bits (133), Expect = 2e-06 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR +VG L+ VG G+ +V LNA++ AA P+ P GLYL V Y Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSWHPDEVRAALNARDRAACGPVCPPHGLYLAGVSY 249 [59][TOP] >UniRef100_A4U350 Pseudouridylate synthase n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U350_9PROT Length = 245 Score = 55.8 bits (133), Expect = 2e-06 Identities = 31/59 (52%), Positives = 37/59 (62%) Frame = -1 Query: 544 ARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 A AR+FL+HQVR +VG LK VG G V+ L A++ AAA P AP GLYL V Y Sbjct: 187 AEARSFLHHQVRNMVGTLKLVGEGKWHPDRVKAALEARDRAAAGPTAPPDGLYLTGVVY 245 [60][TOP] >UniRef100_A3V9Z5 Pseudouridylate synthase n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3V9Z5_9RHOB Length = 257 Score = 55.8 bits (133), Expect = 2e-06 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G+ + DV L A++ AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGSWSPDDVTAALEARDRAACGPVCPPDGLYLARVGY 249 [61][TOP] >UniRef100_A3V313 Pseudouridylate synthase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V313_9RHOB Length = 257 Score = 55.8 bits (133), Expect = 2e-06 Identities = 29/58 (50%), Positives = 37/58 (63%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G DV R L A++ AA P+ P GLYL V+Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWQPGDVARALTARDRAACGPVCPPQGLYLAGVRY 249 [62][TOP] >UniRef100_Q5LNR0 tRNA pseudouridine synthase A n=1 Tax=Ruegeria pomeroyi RepID=TRUA_SILPO Length = 262 Score = 55.8 bits (133), Expect = 2e-06 Identities = 29/61 (47%), Positives = 37/61 (60%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYDL 362 RAR+FL++QVR VG L+ VG G DV L A++ AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWAPEDVRSALEARDRAACGPVCPPQGLYLARVGYPE 251 Query: 361 P 359 P Sbjct: 252 P 252 [63][TOP] >UniRef100_B1ZGA6 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium populi BJ001 RepID=TRUA_METPB Length = 252 Score = 55.8 bits (133), Expect = 2e-06 Identities = 28/64 (43%), Positives = 35/64 (54%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 +V+ AR+FL+HQVR + G L G L+ DV IL K P+APACGL Sbjct: 187 IVIATSARSFLHHQVRAMAGTLMLAGCRRLSADDVAEILATKAKHRCGPLAPACGLTFVG 246 Query: 376 VKYD 365 V YD Sbjct: 247 VDYD 250 [64][TOP] >UniRef100_B1MVY3 tRNA pseudouridine synthase A n=1 Tax=Leuconostoc citreum KM20 RepID=TRUA_LEUCK Length = 260 Score = 55.8 bits (133), Expect = 2e-06 Identities = 26/63 (41%), Positives = 39/63 (61%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 LV AFLY+Q+R++VGVL +G G + D++R++ K+ A APA GLYL + Sbjct: 192 LVFVFEGNAFLYNQIRIMVGVLLEIGNGRREIHDIQRLIAVKDREQARFTAPASGLYLDE 251 Query: 376 VKY 368 + Y Sbjct: 252 IDY 254 [65][TOP] >UniRef100_Q65P74 tRNA pseudouridine synthase A n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=TRUA_BACLD Length = 247 Score = 55.8 bits (133), Expect = 2e-06 Identities = 28/55 (50%), Positives = 37/55 (67%) Frame = -1 Query: 529 FLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYD 365 FLY+ VR++ G L VGTG + D+E+++ AKN AA APA GLYL +V YD Sbjct: 192 FLYNMVRIIAGTLLDVGTGKFSPGDIEKMILAKNRDAAGRTAPAHGLYLWRVIYD 246 [66][TOP] >UniRef100_Q3Z951 Pseudouridylate synthase n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z951_DEHE1 Length = 248 Score = 55.5 bits (132), Expect = 3e-06 Identities = 27/66 (40%), Positives = 37/66 (56%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 L+ A +FL HQVR +G L +G G +++ + E + AK A P APACGL L + Sbjct: 180 LIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVR 239 Query: 376 VKYDLP 359 V Y P Sbjct: 240 VNYREP 245 [67][TOP] >UniRef100_C6AB91 Pseudouridylate synthase n=1 Tax=Bartonella grahamii as4aup RepID=C6AB91_BARGA Length = 247 Score = 55.5 bits (132), Expect = 3e-06 Identities = 28/59 (47%), Positives = 37/59 (62%) Frame = -1 Query: 544 ARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 A+AR+FL+HQ+R G L VG G T D+E L+AK+ +AP GLYL KV+Y Sbjct: 189 AQARSFLHHQIRSFAGSLMEVGIGRWTAQDLEAALHAKDRKHCGVVAPPSGLYLTKVEY 247 [68][TOP] >UniRef100_A9GBG1 Pseudouridylate synthase n=1 Tax=Phaeobacter gallaeciensis BS107 RepID=A9GBG1_9RHOB Length = 257 Score = 55.5 bits (132), Expect = 3e-06 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G + DV+ L A++ AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPGHGLYLARVGY 249 [69][TOP] >UniRef100_A9EX11 Pseudouridylate synthase n=1 Tax=Phaeobacter gallaeciensis 2.10 RepID=A9EX11_9RHOB Length = 257 Score = 55.5 bits (132), Expect = 3e-06 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G + DV+ L A++ AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWSPEDVKSALEAEDRAACGPVCPGHGLYLARVGY 249 [70][TOP] >UniRef100_D0D676 tRNA pseudouridine synthase A n=1 Tax=Citreicella sp. SE45 RepID=D0D676_9RHOB Length = 255 Score = 55.1 bits (131), Expect = 4e-06 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR +VG L+ VG G+ DV+ L A++ AA P+ P GLYL V Y Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSWAPEDVKHALEARDRAACGPVCPPDGLYLTGVGY 249 [71][TOP] >UniRef100_C8W418 tRNA pseudouridine synthase A n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W418_9FIRM Length = 250 Score = 55.1 bits (131), Expect = 4e-06 Identities = 26/65 (40%), Positives = 38/65 (58%) Frame = -1 Query: 562 RCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYL 383 + L+ T R FLYH VR++ G L VGTG + ++E IL + +A PA GL+L Sbjct: 186 KMLIFTFRGNGFLYHMVRIITGTLLQVGTGKIHYSEIETILKKCDRKSAGATVPALGLFL 245 Query: 382 GKVKY 368 +V+Y Sbjct: 246 ERVEY 250 [72][TOP] >UniRef100_B6B8U3 Pseudouridylate synthase n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8U3_9RHOB Length = 255 Score = 55.1 bits (131), Expect = 4e-06 Identities = 28/58 (48%), Positives = 37/58 (63%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG G DV+ L A++ AA P+ P GLYL +V Y Sbjct: 192 RARSFLHNQVRSFVGTLERVGAGAWDPADVKAALEARDRAACGPVCPGHGLYLARVGY 249 [73][TOP] >UniRef100_B8IFQ2 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=TRUA_METNO Length = 254 Score = 55.1 bits (131), Expect = 4e-06 Identities = 27/63 (42%), Positives = 39/63 (61%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 ++V AR+FL+HQVR +VG L G+G L V +L++++ A P+APA GL L Sbjct: 183 ILVATSARSFLHHQVRGMVGTLMLAGSGRLDTAGVRAVLDSRDRARCGPLAPAAGLTLTG 242 Query: 376 VKY 368 V Y Sbjct: 243 VDY 245 [74][TOP] >UniRef100_Q0BUB4 Pseudouridylate synthase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BUB4_GRABC Length = 270 Score = 54.7 bits (130), Expect = 5e-06 Identities = 30/64 (46%), Positives = 38/64 (59%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 + + A AR+FL+HQVR +VG LK VG G T V L A++ A A P AP GL L Sbjct: 202 ITIIAEARSFLHHQVRNMVGTLKLVGDGRWTAEHVAAALAARDRAKAGPTAPPDGLALTG 261 Query: 376 VKYD 365 V Y+ Sbjct: 262 VIYE 265 [75][TOP] >UniRef100_B1ZVD8 Pseudouridylate synthase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVD8_OPITP Length = 268 Score = 54.7 bits (130), Expect = 5e-06 Identities = 32/65 (49%), Positives = 38/65 (58%) Frame = -1 Query: 562 RCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYL 383 R + + A A FLY VR LVGVL AVG G LTV DV IL ++ A AP GL+L Sbjct: 187 RVIRIIAEADGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLFL 246 Query: 382 GKVKY 368 +V Y Sbjct: 247 VRVFY 251 [76][TOP] >UniRef100_C6PXK3 Pseudouridylate synthase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PXK3_9CLOT Length = 247 Score = 54.7 bits (130), Expect = 5e-06 Identities = 26/54 (48%), Positives = 36/54 (66%) Frame = -1 Query: 529 FLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 FLY+ VR++VG L VGT D+++I+++KN + A APACGL L KV Y Sbjct: 194 FLYNMVRIIVGTLLDVGTNRFNPEDIDKIISSKNRSNAGKSAPACGLTLEKVFY 247 [77][TOP] >UniRef100_A6FKA3 Pseudouridylate synthase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FKA3_9RHOB Length = 255 Score = 54.7 bits (130), Expect = 5e-06 Identities = 28/57 (49%), Positives = 37/57 (64%) Frame = -1 Query: 538 ARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 AR+FL++QVR +VG L+ VG G+ DV+ L AK+ AA P+ P GLYL V Y Sbjct: 193 ARSFLHNQVRSIVGTLERVGAGSWAPEDVKTALEAKDRAACGPVCPPQGLYLAGVGY 249 [78][TOP] >UniRef100_A4EN27 Pseudouridylate synthase n=1 Tax=Roseobacter sp. CCS2 RepID=A4EN27_9RHOB Length = 255 Score = 54.7 bits (130), Expect = 5e-06 Identities = 29/58 (50%), Positives = 37/58 (63%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR VG L+ VG T DV + L AK+ +A P+ P GLYL VKY Sbjct: 192 RARSFLHNQVRSFVGTLERVGAEAWTPDDVGKALAAKDRSACGPVCPPQGLYLAAVKY 249 [79][TOP] >UniRef100_B1M6N9 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=TRUA_METRJ Length = 253 Score = 54.7 bits (130), Expect = 5e-06 Identities = 29/67 (43%), Positives = 37/67 (55%) Frame = -1 Query: 565 HRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLY 386 H +VV AR+FL+HQVR +VG L G L DV IL + + + P+APA GL Sbjct: 184 HDEIVVATAARSFLHHQVRAMVGTLMLAGCRRLAADDVAEILASGDKSRCGPLAPAAGLT 243 Query: 385 LGKVKYD 365 V YD Sbjct: 244 FVGVDYD 250 [80][TOP] >UniRef100_Q0ASJ7 tRNA pseudouridine synthase A n=1 Tax=Maricaulis maris MCS10 RepID=TRUA_MARMM Length = 249 Score = 54.7 bits (130), Expect = 5e-06 Identities = 29/65 (44%), Positives = 40/65 (61%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 +T AR+FL+ QVR +VG L VG G + D +R L+A + + P+APA GLYL V Sbjct: 185 LTCSARSFLHRQVRSMVGSLVEVGVGKWSARDFKRALDAADRSRCGPVAPADGLYLTAVD 244 Query: 370 YDLPS 356 Y P+ Sbjct: 245 YPGPA 249 [81][TOP] >UniRef100_Q3ZZP4 Pseudouridylate synthase n=1 Tax=Dehalococcoides sp. CBDB1 RepID=Q3ZZP4_DEHSC Length = 246 Score = 54.3 bits (129), Expect = 6e-06 Identities = 27/66 (40%), Positives = 38/66 (57%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 L++ A +FL HQVR +GVL +G G +++ + + AK A P APACGL L + Sbjct: 178 LILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVR 237 Query: 376 VKYDLP 359 V Y P Sbjct: 238 VNYREP 243 [82][TOP] >UniRef100_A5FRV7 Pseudouridylate synthase n=1 Tax=Dehalococcoides sp. BAV1 RepID=A5FRV7_DEHSB Length = 246 Score = 54.3 bits (129), Expect = 6e-06 Identities = 27/66 (40%), Positives = 38/66 (57%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 L++ A +FL HQVR +GVL +G G +++ + + AK A P APACGL L + Sbjct: 178 LILRIEANSFLTHQVRNTIGVLVELGRGTISMGEFGALFEAKTPGLAGPAAPACGLSLVR 237 Query: 376 VKYDLP 359 V Y P Sbjct: 238 VNYREP 243 [83][TOP] >UniRef100_A4AVW0 Pseudouridylate synthase n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AVW0_9FLAO Length = 224 Score = 54.3 bits (129), Expect = 6e-06 Identities = 29/63 (46%), Positives = 39/63 (61%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 LV T A FL + VR +VG L VGTG ++ D++RIL +K+ A PA GLYL K Sbjct: 154 LVFTIVADRFLRNMVRAVVGTLIDVGTGKTSLADIQRILESKDRTKAGASVPAKGLYLTK 213 Query: 376 VKY 368 ++Y Sbjct: 214 IEY 216 [84][TOP] >UniRef100_Q2RNZ9 tRNA pseudouridine synthase A n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=TRUA_RHORT Length = 278 Score = 54.3 bits (129), Expect = 6e-06 Identities = 29/61 (47%), Positives = 38/61 (62%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 V ARAR+FL+HQVR +VG L VG G T + L A + +AA P AP GLY +V+ Sbjct: 185 VFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLYFLRVR 244 Query: 370 Y 368 + Sbjct: 245 F 245 [85][TOP] >UniRef100_UPI0001905D6D tRNA pseudouridine synthase A n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001905D6D Length = 244 Score = 53.9 bits (128), Expect = 8e-06 Identities = 27/61 (44%), Positives = 36/61 (59%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A A++FL++Q+R G LK G G T DVE L A+N A P+AP GLY +V Sbjct: 165 IRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARNRKACGPVAPPDGLYFLQVD 224 Query: 370 Y 368 Y Sbjct: 225 Y 225 [86][TOP] >UniRef100_UPI0001903B78 tRNA pseudouridine synthase A n=1 Tax=Rhizobium etli Kim 5 RepID=UPI0001903B78 Length = 141 Score = 53.9 bits (128), Expect = 8e-06 Identities = 27/61 (44%), Positives = 36/61 (59%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A A++FL++Q+R G LK G G T DVE L A+N A P+AP GLY +V Sbjct: 60 IRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARNRKACGPVAPPDGLYFLQVD 119 Query: 370 Y 368 Y Sbjct: 120 Y 120 [87][TOP] >UniRef100_UPI00003849ED COG0101: Pseudouridylate synthase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003849ED Length = 256 Score = 53.9 bits (128), Expect = 8e-06 Identities = 29/61 (47%), Positives = 36/61 (59%) Frame = -1 Query: 550 VTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVK 371 + A AR+FL+HQVR +VG LK VG G + D+ R L A + P APA GL L V Sbjct: 185 IIAEARSFLHHQVRNMVGTLKLVGEGKWSPDDMARALAACDRTKGGPTAPAAGLCLTGVS 244 Query: 370 Y 368 Y Sbjct: 245 Y 245 [88][TOP] >UniRef100_Q0FQS7 Pseudouridylate synthase n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FQS7_9RHOB Length = 255 Score = 53.9 bits (128), Expect = 8e-06 Identities = 28/58 (48%), Positives = 37/58 (63%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR +VG L+ VG G+ DV L A++ AA P+ P GLYL V Y Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGSWAPEDVRSALEARDRAACGPVCPPDGLYLMGVGY 249 [89][TOP] >UniRef100_B7C9S2 Pseudouridylate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9S2_9FIRM Length = 247 Score = 53.9 bits (128), Expect = 8e-06 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = -1 Query: 529 FLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYD 365 FL +QVR++ G L AVG + V DV+R+L+AK+ +A A +CGLYL +VKY+ Sbjct: 190 FLRYQVRMMTGTLIAVGQHKIGVDDVQRMLDAKDKSACRYNASSCGLYLVEVKYN 244 [90][TOP] >UniRef100_Q3J0D9 tRNA pseudouridine synthase A n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=TRUA_RHOS4 Length = 255 Score = 53.9 bits (128), Expect = 8e-06 Identities = 28/58 (48%), Positives = 38/58 (65%) Frame = -1 Query: 541 RARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKY 368 RAR+FL++QVR +VG L+ VG G T V L+A++ AA P++P GLYL V Y Sbjct: 192 RARSFLHNQVRSIVGTLERVGAGAWTPDQVREALDARDRAACGPVSPPQGLYLTGVGY 249 [91][TOP] >UniRef100_B0UP40 tRNA pseudouridine synthase A n=1 Tax=Methylobacterium sp. 4-46 RepID=TRUA_METS4 Length = 250 Score = 53.9 bits (128), Expect = 8e-06 Identities = 27/66 (40%), Positives = 38/66 (57%) Frame = -1 Query: 556 LVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGK 377 ++V AR+FL+HQVR +VG L G G L V +L++++ P+APA GL L Sbjct: 183 ILVATSARSFLHHQVRGMVGTLMLAGCGRLDAAGVRAVLDSRDRTRCGPLAPAAGLTLTG 242 Query: 376 VKYDLP 359 V Y P Sbjct: 243 VDYPEP 248 [92][TOP] >UniRef100_A9WH95 tRNA pseudouridine synthase A n=2 Tax=Chloroflexus RepID=TRUA_CHLAA Length = 278 Score = 53.9 bits (128), Expect = 8e-06 Identities = 28/65 (43%), Positives = 37/65 (56%) Frame = -1 Query: 562 RCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYL 383 R L + A AFL H VR++VG L VG G +TV +L +++ A P APA GL L Sbjct: 184 RLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHGLTL 243 Query: 382 GKVKY 368 V+Y Sbjct: 244 TAVRY 248 [93][TOP] >UniRef100_B0T1S6 tRNA pseudouridine synthase A n=1 Tax=Caulobacter sp. K31 RepID=TRUA_CAUSK Length = 249 Score = 53.9 bits (128), Expect = 8e-06 Identities = 28/58 (48%), Positives = 35/58 (60%) Frame = -1 Query: 538 ARAFLYHQVRLLVGVLKAVGTGNLTVPDVERILNAKNVAAASPMAPACGLYLGKVKYD 365 AR+FL+ QVR + G L VG G T DV L A++ A P+APA GLYL V Y+ Sbjct: 189 ARSFLHRQVRSMTGTLAEVGVGRWTADDVMAALEARDRTACGPVAPADGLYLTGVGYE 246