BB910150 ( RCE09061 )

[UP]


[1][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SVA4_SOYBN
          Length = 206

 Score =  242 bits (618), Expect = 1e-62
 Identities = 118/161 (73%), Positives = 139/161 (86%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           MV SE EM RLYRIRKTVM+MLRDRG+LVGDFE+NMSK EF+ KYGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
           K+   DQIYV FP+E KVG+  ++TY NRM SENVYRAILV Q++LT  ++  I E++SK
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           FHLE+FQEAELLVN+K+H LVPEHQVLTD EKKTLLERYT+
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTV 161

[2][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXZ4_SOYBN
          Length = 206

 Score =  238 bits (608), Expect = 2e-61
 Identities = 116/161 (72%), Positives = 138/161 (85%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           MV SE E+ RLYRIRKTVM+MLRDR +LVGDFE+NMSK EF+ KYGE+MKREDLVINK+K
Sbjct: 1   MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60

Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
           K+   DQIYV FP+E KVG+  ++TY NRM SENVYRAILV Q++LT  ++  I E++SK
Sbjct: 61  KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           FHLE+FQEAELLVN+K+H LVPEHQVLTD EKKTLLERYT+
Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTV 161

[3][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PEL2_VITVI
          Length = 206

 Score =  232 bits (592), Expect = 1e-59
 Identities = 113/161 (70%), Positives = 137/161 (85%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           M  SE E++RL+RIRKTVM+ML+DRGY VGDFE+NM+K +F  K+GENMKREDLVINKAK
Sbjct: 1   MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60

Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
           +   SDQIYV FPEE KVG+  ++TY NRMKSENV+RAILV Q +LT  ++  I E+++K
Sbjct: 61  RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           FHLE+FQEAELLVN+K+HVLVPEHQVLT  EKKTLLERYT+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTV 161

[4][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
          Length = 206

 Score =  229 bits (584), Expect = 1e-58
 Identities = 109/161 (67%), Positives = 135/161 (83%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           M  +E E+ RL RIRKTVM+ML+DRGY VGDFE+ M++++F  KYG NMKREDLVINK K
Sbjct: 1   MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60

Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
           +N  SDQIYV FPEE KVG+  ++TY NRMKSENV+RAILV Q +LT  ++  I E+++K
Sbjct: 61  RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           FHLE+FQEAELLVN+K+HVLVPEHQVL++ EKKTLLERYT+
Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTV 161

[5][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
           thaliana RepID=O81098_ARATH
          Length = 205

 Score =  214 bits (544), Expect = 5e-54
 Identities = 101/160 (63%), Positives = 131/160 (81%)
 Frame = +2

Query: 95  VFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKK 274
           + +E E+ RLYRI+KT+M+MLRDRGY + D E+ M+K +F  K+G+NMKREDLV  KAK+
Sbjct: 1   MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60

Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454
           N  SDQ+Y+ FP+E KVG+  ++ Y NRMKSENV+RAILV Q +LT  ++  I E++SKF
Sbjct: 61  NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120

Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           HLE+FQEAE+LVN+K+HVLVPEHQVLT  EKKTLLERYT+
Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTV 160

[6][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=A9NTD1_PICSI
          Length = 191

 Score =  211 bits (538), Expect = 2e-53
 Identities = 98/157 (62%), Positives = 130/157 (82%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           + +  +L+RIR+TV++ML DR YLVGDFE+N +K++F +K+GE+ K+EDLVINKAK+N P
Sbjct: 4   DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           S+QI+V FPEE KVG+  ++TY+ RMKSE V+RAILV Q +LT  ++  + E + KFHLE
Sbjct: 64  SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +FQEAELLVN+K+HVLVPE Q+LT  EKKTLLERYTL
Sbjct: 124 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTL 160

[7][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
           guineensis RepID=B3TLL2_ELAGV
          Length = 204

 Score =  211 bits (537), Expect = 3e-53
 Identities = 101/158 (63%), Positives = 131/158 (82%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           SE++++RL+RIR+TVM+MLRDRGYLV D E+NM+K +F EK+GE +KREDLVINKAKKN 
Sbjct: 2   SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKND 61

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460
           P+DQIYV FP + KVG+  ++ Y+ RMK+ENV R ILV Q +LT  ++  + E++ K+ L
Sbjct: 62  PADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYML 121

Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E+FQ+ ELLVN+K+HVLVPEHQVLT  EKKTLLERYTL
Sbjct: 122 EVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTL 159

[8][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RKM1_RICCO
          Length = 225

 Score =  210 bits (534), Expect = 7e-53
 Identities = 108/180 (60%), Positives = 136/180 (75%), Gaps = 19/180 (10%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           M  SE+E+ RL+RIR+TVM+ML+DR YLV D E+N++K +F  KYG+NMKREDLVI+K+K
Sbjct: 1   MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60

Query: 272 KNK-------------------PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILV 394
           ++                    P  QIYV FPEE KVG+  ++TY NRMKSENV+RAILV
Sbjct: 61  RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            Q SLT  ++  I E+ASKFHLE+FQE+ELLVN+K+HVLVPEHQVLT+ EKKTLLERYT+
Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180

[9][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RWG5_PHYPA
          Length = 208

 Score =  209 bits (532), Expect = 1e-52
 Identities = 98/157 (62%), Positives = 130/157 (82%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           + +  RLYRIRKTVMEMLRDR Y+V D+E+ +SK++FREKYG+  KREDLVI K +++  
Sbjct: 7   DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           ++ I+V FPEE KVG+  ++TY++RMK+ENV+RAILV Q +LT  ++  + EMASK+HLE
Sbjct: 67  AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +FQEAELLVN+K+HVLVP H+VLT  EKKTLLERYT+
Sbjct: 127 VFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTV 163

[10][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RKG6_PHYPA
          Length = 208

 Score =  206 bits (523), Expect = 1e-51
 Identities = 96/157 (61%), Positives = 129/157 (82%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           + +  RLYRIRKTVMEMLRDR Y+V +FE+N +K+EFREKYG+  KREDLVI K K++  
Sbjct: 7   DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           ++ I+V FPEE KVG+  ++TY++RMK+ENV+RAILV Q +LT  ++  + EM+SK+H+E
Sbjct: 67  AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +FQEAELLVN+KDHVLVP+H+VL   EK TLL+RYT+
Sbjct: 127 VFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTV 163

[11][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
           RepID=B4FU06_MAIZE
          Length = 210

 Score =  201 bits (511), Expect = 3e-50
 Identities = 100/163 (61%), Positives = 126/163 (77%)
 Frame = +2

Query: 86  ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265
           A +V  E  + RLYRIR+TVM+MLRDRGYLV D E+  S+ +F  K+GE+  REDL+INK
Sbjct: 3   AGLVTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINK 62

Query: 266 AKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
            KKN PSDQIYV FP + KVG+  ++ Y+  M  ENV RA+LV Q +LT  +K+F+ E+ 
Sbjct: 63  YKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELE 122

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            K HLEIFQEAE+L+N+K+HVLVPEHQVLT+ EKKTLLERYTL
Sbjct: 123 PKIHLEIFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTL 165

[12][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LR68_PICSI
          Length = 194

 Score =  200 bits (509), Expect = 6e-50
 Identities = 96/157 (61%), Positives = 124/157 (78%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           + +  +L+RIR+TV++ML DR YLVGDFE+N +K++F +K+GE+ K+EDLVINKAK+N P
Sbjct: 4   DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           S+QI+V FPEE KVG+  ++TY+ RMKSE V+RAILV Q            E + KFHLE
Sbjct: 64  SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQ-----------EFSGKFHLE 112

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +FQEAELLVN+K+HVLVPE Q+LT  EKKTLLERYTL
Sbjct: 113 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTL 149

[13][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
          Length = 210

 Score =  197 bits (502), Expect = 4e-49
 Identities = 99/163 (60%), Positives = 126/163 (77%)
 Frame = +2

Query: 86  ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265
           A +V  E  + RL RIR+TVM+MLRDRGYLV + E+ M + +F  KYGE+  REDL+INK
Sbjct: 3   AGLVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINK 62

Query: 266 AKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
            KKN PSDQIYV FP + KVG+  ++ Y+  MK+ENV RA+LV Q +LT  +++F+ E+ 
Sbjct: 63  YKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELE 122

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            K HLEIFQEAELL+N+K+HVLVPEHQVL + EKKTLLERYTL
Sbjct: 123 PKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTL 165

[14][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=B9ETS9_ORYSJ
          Length = 210

 Score =  197 bits (501), Expect = 5e-49
 Identities = 99/163 (60%), Positives = 126/163 (77%)
 Frame = +2

Query: 86  ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265
           A +V  E  + RL RIR+TVM+MLRDRGYLV + E+ M + +F  KYGE+  REDL+INK
Sbjct: 3   AGLVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINK 62

Query: 266 AKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
            KKN PSDQIYV FP + KVG+  ++ Y+  MK+ENV RA+LV Q +LT  +++F+ E+ 
Sbjct: 63  YKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELE 122

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            K HLEIFQEAELL+N+K+HVLVPEHQVL + EKKTLLERYTL
Sbjct: 123 PKIHLEIFQEAELLINIKEHVLVPEHQVLNNGEKKTLLERYTL 165

[15][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FGM1_MAIZE
          Length = 206

 Score =  185 bits (470), Expect = 2e-45
 Identities = 86/161 (53%), Positives = 122/161 (75%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           M   ++E++RL+RIR+TV EMLRDRGY V D ++ + + +F E+YG  ++R++L  N  K
Sbjct: 1   MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60

Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
            N PSDQIYV FP E K G+  +R Y+ +MK+ENV+  ILV Q +L+  +++ + E++ K
Sbjct: 61  LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +HLE+FQEAELLVN+KDHVLVPEH +LT  +KKTLLERYT+
Sbjct: 121 YHLEVFQEAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTV 161

[16][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q7XUF8_ORYSJ
          Length = 205

 Score =  182 bits (461), Expect = 2e-44
 Identities = 82/158 (51%), Positives = 124/158 (78%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           SE E +RL+RIR+TVM+MLRDRGYLV + ++++ + +F  ++G+ + R+ LV ++ KK+ 
Sbjct: 3   SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460
            +DQIYV FP++ K G+  +R+Y+ RMK E+V+  ILV Q +L+  +++ + E++ KFHL
Sbjct: 63  GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122

Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E+FQEAELLVN+KDH LVPEH++LT  +KKTLLERYT+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTV 160

[17][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
           Japonica Group RepID=B7EQI7_ORYSJ
          Length = 167

 Score =  182 bits (461), Expect = 2e-44
 Identities = 82/158 (51%), Positives = 124/158 (78%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           SE E +RL+RIR+TVM+MLRDRGYLV + ++++ + +F  ++G+ + R+ LV ++ KK+ 
Sbjct: 3   SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460
            +DQIYV FP++ K G+  +R+Y+ RMK E+V+  ILV Q +L+  +++ + E++ KFHL
Sbjct: 63  GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122

Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E+FQEAELLVN+KDH LVPEH++LT  +KKTLLERYT+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTV 160

[18][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
           RepID=A3AV22_ORYSJ
          Length = 217

 Score =  182 bits (461), Expect = 2e-44
 Identities = 82/158 (51%), Positives = 124/158 (78%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           SE E +RL+RIR+TVM+MLRDRGYLV + ++++ + +F  ++G+ + R+ LV ++ KK+ 
Sbjct: 3   SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460
            +DQIYV FP++ K G+  +R+Y+ RMK E+V+  ILV Q +L+  +++ + E++ KFHL
Sbjct: 63  GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122

Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E+FQEAELLVN+KDH LVPEH++LT  +KKTLLERYT+
Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTV 160

[19][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MXV4_9CHLO
          Length = 206

 Score =  164 bits (414), Expect = 6e-39
 Identities = 82/157 (52%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S  ++T+L+RI KTV +ML  RGYLV   E+   KD FRE YG++ KRE L +   +++ 
Sbjct: 3   SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK-FH 457
           PS+ I+V FPEE KVG+  ++ Y  RMK E+V+RAI+V Q+SLT  +K  + E AS+ F+
Sbjct: 63  PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E FQE ELLVN+ +HVLVPEH +L+D EK+TLL RY
Sbjct: 123 IEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLARY 159

[20][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
           Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
          Length = 206

 Score =  163 bits (413), Expect = 8e-39
 Identities = 74/156 (47%), Positives = 115/156 (73%)
 Frame = +2

Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPS 286
           + +TRL+R+R+T ++ML DRGYLV   E+  +KD+FR+++GEN +++DL I   +++ P+
Sbjct: 2   DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61

Query: 287 DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466
           +QI+V FPEE KVG+  ++    RMK E V RAI+V  S  T  +K+ + +M  K+H+E 
Sbjct: 62  EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121

Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           F E+ELLVN+ +HVLVPEH++L+  EK+TLL+RY +
Sbjct: 122 FLESELLVNITEHVLVPEHRILSPDEKRTLLDRYKI 157

[21][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
           intestinalis RepID=UPI000180C3C9
          Length = 210

 Score =  159 bits (401), Expect = 2e-37
 Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  RL+RIRKTVM++  DRGYLV   E++ S +EF+E++G+        R+DL I  A
Sbjct: 4   EAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVG+  ++TY  RM+ EN+ RAI+V Q S+T  +K  +F+MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E ELL+N+ +H LVPEH VLT  EK  LL RY L
Sbjct: 124 KYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKL 165

[22][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RWP8_OSTLU
          Length = 205

 Score =  158 bits (399), Expect = 3e-37
 Identities = 80/157 (50%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S ++ TRL+R+RKT+ +ML  RGYLV   E+    D F E +GE  KRE L I   K++ 
Sbjct: 2   SNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDD 61

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE-MASKFH 457
           PS+ I+V FP+E KVG+  ++    RMK ENV+RAI+V Q+SLT  +K  + E    KF+
Sbjct: 62  PSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFY 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E FQE ELLVN+ DHVLVPEH +L+D +K+TLL+RY
Sbjct: 122 IEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLDRY 158

[23][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
            Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
          Length = 1124

 Score =  157 bits (398), Expect = 4e-37
 Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
 Frame = +2

Query: 101  SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
            S +   RL+R+RKT+ +ML  RGYLV   E+    D F E++GE  KR+ L I   +K+ 
Sbjct: 921  SSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDD 980

Query: 281  PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE-MASKFH 457
            PS+ I+V FP+E KVG+  ++    RMK ENV+RAI+V Q+SLT  +K  + E    KF+
Sbjct: 981  PSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFY 1040

Query: 458  LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            +E FQE ELLVN+ DHVLVPEH +L+D +K+TLLERY
Sbjct: 1041 IEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERY 1077

[24][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
          Length = 204

 Score =  154 bits (388), Expect = 6e-36
 Identities = 77/152 (50%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
 Frame = +2

Query: 116 TRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQI 295
           TRL+RIRKTV +ML  RGYLV   E++  KD F E++GE+ +R+ L +    +  P+  I
Sbjct: 6   TRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPTQHI 65

Query: 296 YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE-MASKFHLEIFQ 472
           +V FP+E KVG+  ++ Y  RMK E V RAI+V Q SLT  ++  + E  A KF++E FQ
Sbjct: 66  FVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQ 125

Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           EAELLVN+ DHVLVPEH +L+D +K+ LL+RY
Sbjct: 126 EAELLVNITDHVLVPEHILLSDEQKRVLLDRY 157

[25][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
           vitripennis RepID=UPI00015B5456
          Length = 210

 Score =  150 bits (380), Expect = 5e-35
 Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E++G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP+E K+GI  ++TY  RM+ E ++RAI+V QS +T  +K  + +MA 
Sbjct: 64  HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH VLT  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKL 165

[26][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186E78B
          Length = 210

 Score =  150 bits (379), Expect = 7e-35
 Identities = 72/162 (44%), Positives = 112/162 (69%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E++G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP++ K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK+ LL+RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKL 165

[27][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
          Length = 210

 Score =  150 bits (378), Expect = 9e-35
 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + ++F+E +G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKL 165

[28][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
          Length = 210

 Score =  149 bits (377), Expect = 1e-34
 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + ++F+E +G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKL 165

[29][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
          Length = 210

 Score =  149 bits (377), Expect = 1e-34
 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + ++F+E +G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKL 165

[30][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
           RepID=A6N9W6_ORNPR
          Length = 210

 Score =  149 bits (377), Expect = 1e-34
 Identities = 73/162 (45%), Positives = 109/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + D+F++++G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP+E K+GI  ++TY  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH VLT  EK  LL RY L
Sbjct: 124 KYILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKL 165

[31][TOP]
>UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
           RepID=UPI000051A7F2
          Length = 179

 Score =  149 bits (376), Expect = 1e-34
 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E++G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP+E K+GI  ++TY  RM+ E ++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH VLT  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKL 165

[32][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
           RepID=UPI00003C0CAC
          Length = 210

 Score =  149 bits (376), Expect = 1e-34
 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E++G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP+E K+GI  ++TY  RM+ E ++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH VLT  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKL 165

[33][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
           RepID=B0X7A5_CULQU
          Length = 210

 Score =  149 bits (376), Expect = 1e-34
 Identities = 72/160 (45%), Positives = 111/160 (69%), Gaps = 5/160 (3%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKAKK 274
           E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E++G+        R DL++  A  
Sbjct: 6   ETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65

Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454
           + P+DQ++V FP+E K+GI  ++TY  RM+ EN++RAI+V Q+ +T  +K  + +MA K+
Sbjct: 66  DDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKY 125

Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            LE F E+ELL+N+ +H LVPEH V+T  EK+ LL RY L
Sbjct: 126 ILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKL 165

[34][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
          Length = 210

 Score =  149 bits (375), Expect = 2e-34
 Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + ++F+E +G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  +K+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKL 165

[35][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
          Length = 210

 Score =  149 bits (375), Expect = 2e-34
 Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + ++F+E +G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  +K+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKL 165

[36][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
          Length = 210

 Score =  148 bits (374), Expect = 3e-34
 Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++ + ++F++ +G+        R DL++  A
Sbjct: 4   EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKL 165

[37][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
           RepID=UPI0000D56A05
          Length = 210

 Score =  148 bits (373), Expect = 3e-34
 Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E+ G+        R DL I  A
Sbjct: 4   EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP+E K+GI  ++TY  RM+ EN++RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKL 165

[38][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus clemensi RepID=C1C1G9_9MAXI
          Length = 210

 Score =  147 bits (372), Expect = 4e-34
 Identities = 72/162 (44%), Positives = 111/162 (68%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E+E  +L+++RKTVM +  DRGYLV   E++ ++D+F+ ++G+        R DL I  A
Sbjct: 4   ESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPE+ K+G+  +RTY  RM+ EN+ RAI+V Q+ +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EKK LL++Y L
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKL 165

[39][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
          Length = 210

 Score =  147 bits (370), Expect = 7e-34
 Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKTVM++  DRGYLV   E++ + ++F+E++G+        R DL++  A
Sbjct: 4   ECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE K+GI  ++TY  RM+ E + RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH VLT  EK+ LL RY L
Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKL 165

[40][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
           RepID=Q5DDM1_SCHJA
          Length = 206

 Score =  144 bits (364), Expect = 4e-33
 Identities = 73/161 (45%), Positives = 108/161 (67%), Gaps = 1/161 (0%)
 Frame = +2

Query: 95  VFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKK 274
           +  ++E  +L+RIRKT+++M +DRGYLV   E+  S ++F+   G+   R+DL++    +
Sbjct: 1   MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60

Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQ-SSLTTQSKNFIFEMASK 451
             P+D +YV FPEE KV +  +R Y+N+M+ ++ YRAILV Q   LT  +K  I E++ K
Sbjct: 61  EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 120

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           + LE F E EL+VN+ +H LVP+H VLT  EKK LLERY L
Sbjct: 121 YTLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRL 161

[41][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
           rerio RepID=Q6DEG5_DANRE
          Length = 210

 Score =  144 bits (363), Expect = 5e-33
 Identities = 73/162 (45%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEFR ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKL 165

[42][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
           Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
          Length = 208

 Score =  144 bits (363), Expect = 5e-33
 Identities = 73/158 (46%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           ++E  +L+RIRKT+++M +DRGYLV   E+  S ++F+   G+   R+DL++    +  P
Sbjct: 6   DSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDP 65

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQ-SSLTTQSKNFIFEMASKFHL 460
           +D +YV FPEE KV +  +R Y+N+M+ ++ YRAILV Q   LT  +K  I E++ K+ L
Sbjct: 66  ADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTL 125

Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E F E EL+VN+ +H LVP+H VLT  EKK LLERY L
Sbjct: 126 ECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRL 163

[43][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
          Length = 210

 Score =  144 bits (363), Expect = 5e-33
 Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+++RKTVM +  DRGYLV   E++ + D+F+ ++G+        R DL I  A
Sbjct: 4   EAENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP++ K+GI  +RTY  RM+ EN+ RAI++ QS +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EKK LL++Y L
Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKL 165

[44][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3ZQF0_BRAFL
          Length = 210

 Score =  143 bits (361), Expect = 8e-33
 Identities = 71/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  +L+RIRKT+M++  DRGYLV   E++   D+F++++G+        R+DLV+  A
Sbjct: 4   EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V F +E K+GI  ++ Y  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+ELL+N+ +H LVPEH V+T  EK  LL RY L
Sbjct: 124 KYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRL 165

[45][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
          Length = 210

 Score =  143 bits (360), Expect = 1e-32
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKL 165

[46][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
           mordax RepID=C1BIS3_OSMMO
          Length = 210

 Score =  143 bits (360), Expect = 1e-32
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKL 165

[47][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
           Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
          Length = 210

 Score =  142 bits (359), Expect = 1e-32
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKL 165

[48][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
           RepID=UPI0000587A08
          Length = 210

 Score =  142 bits (358), Expect = 2e-32
 Identities = 70/162 (43%), Positives = 106/162 (65%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E  RL+R+R+T+M++  DRGYLV   E++ + ++F+E++G+        R+DL +  A
Sbjct: 4   EAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVG+  ++ Y  RM+ EN+ RAI+  Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F EAELL+N+ +H  VPEH V+T  EK  LL RY L
Sbjct: 124 KYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKL 165

[49][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
           RepID=Q28HF5_XENTR
          Length = 210

 Score =  142 bits (358), Expect = 2e-32
 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKL 165

[50][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
           RepID=A8XGH1_CAEBR
          Length = 211

 Score =  142 bits (358), Expect = 2e-32
 Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 5/166 (3%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLV 256
           M   E E  RL+RIRKTV++M+ DRGYLV   E++   + F+E +G+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60

Query: 257 INKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
           I  A  + P+DQ++V FPE+ K+GI  ++    +M+ +N+ RAI+V Q+ +T  +K  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +MA K+ LE F EAEL+VN+ +H LVPEH V+T  EK  LL RY L
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKL 166

[51][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Pongo abelii RepID=RPAB1_PONAB
          Length = 210

 Score =  142 bits (358), Expect = 2e-32
 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EFR ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[52][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
          Length = 211

 Score =  142 bits (357), Expect = 2e-32
 Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 5/166 (3%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLV 256
           M   E E  RL+RIRKTV++M+ DRGYLV   E++   + F+ +YG+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60

Query: 257 INKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
           I  A  + P+DQ++V FPE+ K+GI  ++    +M+ +N+ RAI+V Q+ +T  +K  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +MA K+ LE F EAEL+VN+ +H LVPEH V+T  EK  LL RY L
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKL 166

[53][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           isoform 1 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A3E0E
          Length = 208

 Score =  141 bits (355), Expect = 4e-32
 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[54][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
           polymerases I, II, and III subunit ABC1) (DNA-directed
           RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
           polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
           lupus familiaris RepID=UPI0000EB19D6
          Length = 212

 Score =  141 bits (355), Expect = 4e-32
 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[55][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
           Tax=Murinae RepID=RPAB1_MOUSE
          Length = 210

 Score =  141 bits (355), Expect = 4e-32
 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[56][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
           Tax=Neognathae RepID=B5FX59_TAEGU
          Length = 210

 Score =  140 bits (354), Expect = 5e-32
 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[57][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
          Length = 210

 Score =  140 bits (354), Expect = 5e-32
 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RAI+V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V++  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKL 165

[58][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Esox lucius RepID=C1BZT4_ESOLU
          Length = 210

 Score =  140 bits (354), Expect = 5e-32
 Identities = 71/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA +V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKL 165

[59][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
           RepID=C6K8L9_CAEBE
          Length = 211

 Score =  140 bits (354), Expect = 5e-32
 Identities = 73/166 (43%), Positives = 105/166 (63%), Gaps = 5/166 (3%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLV 256
           M   E E  RL+RIRKTV++M+ DRGYLV   E++     F+E +G+        R DL 
Sbjct: 1   MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60

Query: 257 INKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
           I  A  + P+DQ++V FP++ K+GI  ++    +M+ +N+ RAI+V Q+ +T  +K  I 
Sbjct: 61  ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +MA K+ LE F EAEL+VN+ +H LVPEH V+T  EK  LL RY L
Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKL 166

[60][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Salmo salar RepID=B5X8S7_SALSA
          Length = 210

 Score =  140 bits (353), Expect = 7e-32
 Identities = 71/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA +V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKL 165

[61][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
           n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
          Length = 278

 Score =  140 bits (352), Expect = 9e-32
 Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E +  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[62][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
           Tax=Euteleostei RepID=B5X957_SALSA
          Length = 210

 Score =  139 bits (350), Expect = 2e-31
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           + E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA +V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKL 165

[63][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Homo sapiens RepID=RPAB1_HUMAN
          Length = 210

 Score =  139 bits (350), Expect = 2e-31
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ + G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[64][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
           RepID=UPI000056951D
          Length = 211

 Score =  139 bits (349), Expect = 2e-31
 Identities = 72/163 (44%), Positives = 107/163 (65%), Gaps = 6/163 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKTVM++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFP-EEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
             + P+DQ++V FP EE+KVGI  ++ Y  RM+ EN+ RA++V Q+ +T  +K  + +MA
Sbjct: 64  HNDDPTDQMFVFFPVEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 123

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKL 166

[65][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
          Length = 210

 Score =  137 bits (346), Expect = 4e-31
 Identities = 71/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E+ +++RIRKTV++M  DRGYLV   E++ +   F+E +G+        R D+ +  A
Sbjct: 4   EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ E++YRAI+V Q+S+T  ++  + EMA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F EAEL+ N+ ++  VPEH V+T  EK+ LL RY L
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKL 165

[66][TOP]
>UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa
           polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1
           Tax=Canis lupus familiaris RepID=UPI00005A3E0F
          Length = 162

 Score =  137 bits (345), Expect = 6e-31
 Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL R
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162

[67][TOP]
>UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE
          Length = 162

 Score =  137 bits (345), Expect = 6e-31
 Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 5/159 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL R
Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162

[68][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8NU15_COPC7
          Length = 273

 Score =  137 bits (344), Expect = 8e-31
 Identities = 69/159 (43%), Positives = 102/159 (64%), Gaps = 3/159 (1%)
 Frame = +2

Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKAKKN 277
           +E  RL+++ KT+ E+++DRG+ V D E+NMS + FR+ YG NM    R  L      + 
Sbjct: 70  DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 129

Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            PSDQI+V F EE  VG+  +R  +  M+ + + R I++  +++T+ ++  I  MAS + 
Sbjct: 130 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 189

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           LE F EA+LLVN+  H LVP H+VL+  EKKTLLERY L
Sbjct: 190 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRL 228

[69][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Bos taurus RepID=RPAB1_BOVIN
          Length = 210

 Score =  137 bits (344), Expect = 8e-31
 Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV    ++ + +EF+ ++G        +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F + ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165

[70][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5E0K0_DROPS
          Length = 210

 Score =  136 bits (343), Expect = 1e-30
 Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E+ +++RIRKTV++M  DRGYLV   E++ +   F+E +G+        R D+ +  A
Sbjct: 4   EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FP+E KVGI  ++ Y  RM+ E++YRAI+V Q+S+T  ++  + EMA 
Sbjct: 64  HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F EAEL+ N+ ++  VPEH V+T  EK+ LL RY L
Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKL 165

[71][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S3Q9_TRIAD
          Length = 210

 Score =  135 bits (340), Expect = 2e-30
 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKK--- 274
           E E  +L+RIRKTVM+M  DRGY+V   E++ + D+F E++   M     V         
Sbjct: 4   EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVH 63

Query: 275 --NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P++Q++V FP+E KVGI+ ++ Y  RM+ EN+ RAI++ QS +T  +K  + +MA 
Sbjct: 64  HIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           K+ LE F E+EL++N+ +H LVP+H V++  EK  LL RY L
Sbjct: 124 KYTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKL 165

[72][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
           pseudonana CCMP1335 RepID=B8C1Q1_THAPS
          Length = 226

 Score =  134 bits (336), Expect = 6e-30
 Identities = 69/155 (44%), Positives = 100/155 (64%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E +RL+R+ KTV  ML  RGY+V      M+  +F +++GE   RE L I   K +  ++
Sbjct: 27  EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           Q++V FPE+ KVG+  ++   +RMK ENV  AILV +  +T  +K  + EM+  F LE F
Sbjct: 87  QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +EAELLV++ +H LVPEH VL+  EK+ LL+RY L
Sbjct: 147 KEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRL 181

[73][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
          Length = 213

 Score =  132 bits (333), Expect = 1e-29
 Identities = 70/155 (45%), Positives = 105/155 (67%), Gaps = 5/155 (3%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE----DLVINKAKKNKPS 286
           RL+R+RKT+ E+L+DRGYLV    +N +K+ F +++ E  +R+    DL+I  +K++ PS
Sbjct: 12  RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71

Query: 287 DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           DQ+ V FP+E K VG+  +RT   +M+ + + RAILV Q  LT  +K  I E + +  +E
Sbjct: 72  DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +F E+EL+VN+  H LVPEH+ LT  EK+ LLERY
Sbjct: 132 VFNESELVVNITHHELVPEHKPLTAEEKRLLLERY 166

[74][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
           polypeptide E, 25kDa n=1 Tax=Pan troglodytes
           RepID=UPI0000E24E5A
          Length = 230

 Score =  132 bits (331), Expect = 2e-29
 Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 5/152 (3%)
 Frame = +2

Query: 134 RKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKAKKNKPSDQIY 298
           RKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A  + P+DQ++
Sbjct: 34  RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93

Query: 299 VLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEA 478
           V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA K+ LE F + 
Sbjct: 94  VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQ 153

Query: 479 ELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           ELL+N+ +H LVPEH V+T  E   LL RY L
Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKL 185

[75][TOP]
>UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SWJ6_PHYPA
          Length = 211

 Score =  132 bits (331), Expect = 2e-29
 Identities = 70/159 (44%), Positives = 103/159 (64%), Gaps = 3/159 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           + + T LY++RK V+EM+RD  Y+V D E+ ++ ++F EKY E+ K+EDL+I K K +  
Sbjct: 7   DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66

Query: 284 SDQIYVLFPE---EVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454
           ++      P+   + +VG+  ++T   RMK ENV RA+ V Q  +T  SK +I   A K+
Sbjct: 67  AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122

Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571
           HLE+F E E LVN+ +  LVP H++LT  EK TLLERYT
Sbjct: 123 HLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYT 161

[76][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
           Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
          Length = 213

 Score =  132 bits (331), Expect = 2e-29
 Identities = 69/155 (44%), Positives = 105/155 (67%), Gaps = 5/155 (3%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE----DLVINKAKKNKPS 286
           RL+R+RKT+ E+L+DRGY+V    +N +K+ F +++ E  +R+    DL+I  +K++ PS
Sbjct: 12  RLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71

Query: 287 DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           DQ+ V FP+E K VG+  +RT   +M+ + + RAILV Q  LT  +K  I E + +  +E
Sbjct: 72  DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +F E+EL+VN+  H LVPEH+ LT  EK+ LLERY
Sbjct: 132 VFNESELVVNITHHELVPEHKPLTPEEKRLLLERY 166

[77][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
           RepID=B7FSY0_PHATR
          Length = 228

 Score =  127 bits (319), Expect = 6e-28
 Identities = 62/155 (40%), Positives = 100/155 (64%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  RL+R+ +T+  ML  RGY+V      ++   F+E++GE   RE+L I   K +  ++
Sbjct: 29  EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           Q+++ FPE+ KVG+  ++ Y +RM++E+V  AI++ +  +T  +K  + EM+  F +E F
Sbjct: 89  QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +E+ELLV++  H LVP HQVLT  EK  LL+RY L
Sbjct: 149 KESELLVDITKHQLVPVHQVLTPNEKNELLKRYRL 183

[78][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
          Length = 207

 Score =  124 bits (312), Expect = 4e-27
 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 5/157 (3%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKAKKNKP 283
           + +RIRKTVM++    G ++ D E++ + ++F+E++G+        R DL I  A  + P
Sbjct: 9   KFWRIRKTVMQVCN--GLILRD-ELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           +DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K  + +MA K+ LE
Sbjct: 66  TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            F EAEL++N+ +H LVPEH ++T  EK+ LL RY L
Sbjct: 126 QFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKL 162

[79][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0D9Y7_LACBS
          Length = 208

 Score =  124 bits (310), Expect = 7e-27
 Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 3/159 (1%)
 Frame = +2

Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN---MKREDLVINKAKKN 277
           +E  +L+++ +T+ E+++DRG+LV D E++M    FR  Y  N   + R  L      + 
Sbjct: 5   DETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRT 64

Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
             +DQI+V F EE  VG+  +R  +  ++ +++ R I+V   ++T  ++  I  MA ++ 
Sbjct: 65  NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYR 124

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           LE F EA+LLVN+  H LVP H VL+  EKKTLLE+Y L
Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRL 163

[80][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DLP1_DROPS
          Length = 320

 Score =  122 bits (307), Expect = 1e-26
 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E+ +L+ IRKT+ EM  DRGYLV   E++ + ++F E +G+        R DL +  +
Sbjct: 4   EAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLS 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P +++ V FPEE KV +  ++ Y +RM+ E ++RAILV +  LT  +K  I  MA 
Sbjct: 64  HADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAP 123

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            + +E F E+EL +NV  H LVP+H VL++ EKK L   Y L
Sbjct: 124 LYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRL 165

[81][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
           Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
          Length = 210

 Score =  122 bits (305), Expect = 3e-26
 Identities = 57/161 (35%), Positives = 108/161 (67%), Gaps = 4/161 (2%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKR---EDLVINKAKK 274
           ++E+TR++++R+TV++MLRDRGY + + ++N+ ++EF +++ + M +   E L ++  K 
Sbjct: 5   DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64

Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYIN-RMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
             P+D+IYV +PE  KVG+ V++  +  +M+ + V+R I+V   ++T  ++  + E+   
Sbjct: 65  PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +E+F+EAEL+ N+ +H LV ++ VL D  KK LL  YT+
Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTV 165

[82][TOP]
>UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Salmo salar RepID=B5XGU7_SALSA
          Length = 159

 Score =  118 bits (296), Expect = 3e-25
 Identities = 57/139 (41%), Positives = 90/139 (64%), Gaps = 5/139 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           + E  RL++IRKT+M++  DRGYLV   E++ + DEF+ ++G+       +R DL +  A
Sbjct: 4   DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA +V Q  +T  +K  + +MA 
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123

Query: 449 KFHLEIFQEAELLVNVKDH 505
           K+ LE F + ELL+N+ +H
Sbjct: 124 KYILEQFLQQELLINITEH 142

[83][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
           Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
          Length = 221

 Score =  117 bits (292), Expect = 8e-25
 Identities = 58/172 (33%), Positives = 101/172 (58%), Gaps = 14/172 (8%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG--------------ENM 238
           +  E+ RL+R+ +TV EM+RDRGYL+ D+E+N+S +EF++++G              ++ 
Sbjct: 5   ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64

Query: 239 KREDLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQ 418
            R ++  +   +N  +D+I+V F  +  V    ++T+I  M      R I++    ++  
Sbjct: 65  SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124

Query: 419 SKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +K  + EM S++HLE F E++LLVN+  H LVP+H V+   EK  L++RY L
Sbjct: 125 AKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRL 176

[84][TOP]
>UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1
           Tax=Dictyostelium discoideum RepID=RPAB1_DICDI
          Length = 197

 Score =  116 bits (291), Expect = 1e-24
 Identities = 64/157 (40%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           ++ RL +IRKTV++ML DR Y++  +E    ++ F       + RE+L +   KK+ P+D
Sbjct: 3   DINRLLQIRKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTD 55

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI--FEMASKFHLE 463
            IYV FP+  KVG+  ++ Y++ MK     RAI+V Q ++T  +K  +  F    K  LE
Sbjct: 56  SIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLE 115

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            F EAELLVN+  H LVP+H +LT  EK  LL RY +
Sbjct: 116 QFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKM 152

[85][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
          Length = 205

 Score =  114 bits (286), Expect = 4e-24
 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN-MKREDLVINKAKKNK 280
           E+   RL+R RKT  +ML+DRGY+V   E N S ++F +++ EN   R  +++  + K  
Sbjct: 2   EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
           P +++ V F +E K  G+  +R    RM+  N+ RAILV Q+ LT  +++ I E A +  
Sbjct: 62  PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E F E+ELLVN+  H LVP+H  LT+ EK+ LL RY
Sbjct: 122 IENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRY 158

[86][TOP]
>UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
           7966 RepID=A8QAC6_MALGO
          Length = 159

 Score =  112 bits (279), Expect = 3e-23
 Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN--MKREDLVINKAKKN 277
           + E  RL+R+ +T+ E++ DRGY V + E+N+  D F+ +   N  + R  +      K+
Sbjct: 4   DRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHKD 63

Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
           KP ++++V +  E  VG+  +R +IN ++ +N+ R I++    +T+ +K  I  M  +  
Sbjct: 64  KPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQLV 123

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           LE F+EA LLVN+  H LVP+H+VLT  EKK LL R
Sbjct: 124 LEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159

[87][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
           Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
          Length = 205

 Score =  111 bits (278), Expect = 3e-23
 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           E+ +TR Y+ RKT  EML DRGY++   E   +   F+E++ EN K R  + I  + KN 
Sbjct: 2   EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            +++I V F +E+K  G+  LR    +M  +++ RAILV Q++LT  +++ I E A +  
Sbjct: 62  ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +E F + ELLVN+  H LVP H  LT  EK+ LL+RY +
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKI 160

[88][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=Q8ID59_PLAF7
          Length = 205

 Score =  111 bits (277), Expect = 5e-23
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN-MKREDLVINKAKKNK 280
           E+ +TR Y+ RKT  EML DRGY++   E   +   F+E + +N  +R  + I+   KN 
Sbjct: 2   EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            +++I V F +EVK  G+  LR    RM+ +++ RAILV Q+ LT  +++ I E A +  
Sbjct: 62  SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +E F + ELLVN+  H LVP H  LT  EKK LL+RY +
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKI 160

[89][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
           strain H RepID=B3L6X3_PLAKH
          Length = 205

 Score =  111 bits (277), Expect = 5e-23
 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           E+ +TR Y+ RKT  EML DRGY++   E   +   F+E++ EN K R  + I  + KN 
Sbjct: 2   EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            S++I V F +E K  G+  LR    +M  +++ RAILV Q++LT  +++ I E A +  
Sbjct: 62  ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +E F + ELLVN+  H LVP H  LT  EK+ LL+RY +
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKI 160

[90][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
           RepID=Q9LUR5_ARATH
          Length = 178

 Score =  110 bits (274), Expect = 1e-22
 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271
           M   + E+ RL+ +++T+M+ML+DRGYL+   E+ M+ +EF EKYG+NMKR  L+++K +
Sbjct: 1   MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLR 60

Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQ--SSLTTQSKNFIFEMA 445
           K                     + T I         RAILV Q   + + Q+  F+  + 
Sbjct: 61  K---------------------MMTMI---------RAILVVQDIKAFSRQALVFLGAVY 90

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
             FH+E+FQE EL+VNVK+HV VPEHQ LT  EK+  LER
Sbjct: 91  PIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLER 130

[91][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
           putative n=1 Tax=Entamoeba dispar SAW760
           RepID=B0EA74_ENTDI
          Length = 204

 Score =  108 bits (271), Expect = 2e-22
 Identities = 61/155 (39%), Positives = 95/155 (61%), Gaps = 3/155 (1%)
 Frame = +2

Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKKNKP 283
           +T +YR  KTV+EMLRDRGY+  + + N + + F+E++   GE +  ++L I   K+N  
Sbjct: 4   VTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDA 63

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           +D I V F E V +   VL  Y+  ++SE+V RAI+V +  L++  K  + E   +   E
Sbjct: 64  TDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MMEQPREVKWE 122

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
              E EL+VNV  HVLVP+H +L+  EK+ LL++Y
Sbjct: 123 ALLEDELIVNVTHHVLVPQHILLSPEEKQELLKKY 157

[92][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
           theta RepID=Q98RN7_GUITH
          Length = 214

 Score =  108 bits (270), Expect = 3e-22
 Identities = 56/166 (33%), Positives = 104/166 (62%), Gaps = 9/166 (5%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDF--EVNMSKDEFREKYGEN--MKREDLVINKAK 271
           +  +  L+++R+TV++M+RDRGY+V D   ++N+S+  F E Y +N  + R+ L I + +
Sbjct: 4   DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63

Query: 272 KNKPSDQIYVLFPE----EVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE 439
            + P ++I ++F E    ++ +G+  +R +  R+K+E   R +++    LT  +K  +  
Sbjct: 64  WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123

Query: 440 MASKFHL-EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           + S   L E F E EL+VN+  H+LVP+H++L+  E K+LLERY++
Sbjct: 124 INSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSI 169

[93][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
           HM-1:IMSS RepID=C4LW54_ENTHI
          Length = 204

 Score =  108 bits (270), Expect = 3e-22
 Identities = 60/155 (38%), Positives = 95/155 (61%), Gaps = 3/155 (1%)
 Frame = +2

Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKKNKP 283
           +T +YR  KTV+EMLRDRGY+  + + N + + F+E++   GE +  ++L I   K+N  
Sbjct: 4   VTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDA 63

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           +D I V F E V +   VL  Y+  ++SE+V RAI+V +  L++  K  + E   +   E
Sbjct: 64  TDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MMEQPREVKWE 122

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
              E EL+VNV  H+LVP+H +L+  EK+ LL++Y
Sbjct: 123 ALLEDELIVNVTHHILVPQHILLSPEEKQELLKKY 157

[94][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
           muris RN66 RepID=B6AE06_9CRYT
          Length = 205

 Score =  108 bits (269), Expect = 4e-22
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           +N  TR +R R+T+ EML DRGY+V   + +     F+E++  + + R  +++  + K  
Sbjct: 2   DNSDTRFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQD 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            + +I   F +E K  G+  +R  + +M   N+ RAIL+ Q+ LT  +K  I + A K +
Sbjct: 62  QTKRIICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHY 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E F E ELLVN+  H LVP+H +L+D EK  LLERY
Sbjct: 122 IESFLENELLVNITRHELVPKHVLLSDEEKSQLLERY 158

[95][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
           yFS275 RepID=B6JZQ6_SCHJY
          Length = 211

 Score =  107 bits (267), Expect = 7e-22
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 5/162 (3%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKK 274
           E  + +++R+ KTV +++ DRGY V   E+ ++ D+FR  +   G N+ R  L    AK 
Sbjct: 6   ERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFY-AKP 64

Query: 275 NKPSDQ--IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448
              SD+  IYV F +E  VGI  +RT+++ +   N    IL+  +++T  +   I  +  
Sbjct: 65  PPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTG 124

Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +F +E FQE++L+VN+  H LVP+H +LT  EKK LL+RY L
Sbjct: 125 QFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKL 166

[96][TOP]
>UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FEX9_MAIZE
          Length = 127

 Score =  107 bits (266), Expect = 9e-22
 Identities = 50/79 (63%), Positives = 64/79 (81%)
 Frame = +2

Query: 338 LRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVP 517
           ++ Y+  M  ENV RA+LV Q +LT  +K+F+ E+  K HLEIFQEAE+L+N+K+HVLVP
Sbjct: 4   IKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVP 63

Query: 518 EHQVLTDTEKKTLLERYTL 574
           EHQVLT+ EKKTLLERYTL
Sbjct: 64  EHQVLTNEEKKTLLERYTL 82

[97][TOP]
>UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis
           RepID=Q4P7S7_USTMA
          Length = 554

 Score =  105 bits (263), Expect = 2e-21
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKK 274
           + E  RL+R+ +T+ E++RDRGY V D E+++  + F+ +Y   G ++ R  L       
Sbjct: 4   DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63

Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454
              + +++V +  +  VG+  +R +I+ M+  ++ R I++    +T+ ++  I  M   F
Sbjct: 64  EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123

Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           HLE F+EA LLVN+  H LVP+H+ L   EKK LL+R
Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160

[98][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=A2ZBC5_ORYSI
          Length = 227

 Score =  103 bits (258), Expect = 7e-21
 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
 Frame = +2

Query: 71  VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247
           VPE  A+M+   + E  RL+  R+T MEMLRDRGY V + E+  +  EFR  + E    E
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIE 74

Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421
            L       + PS ++ ++F  PE VK+    +R    + K EN+ R +L+ QS + +++
Sbjct: 75  RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +  I E+  KF ++IFQ  +LLVN+  HVL P+H+VL+  +K  LL+ Y +
Sbjct: 133 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 182

[99][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2RAP1_ORYSJ
          Length = 227

 Score =  103 bits (257), Expect = 9e-21
 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
 Frame = +2

Query: 71  VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247
           VPE  A+M+   + E  RL+  R+T MEMLRDRGY V + E+  +  EFR  + E    E
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74

Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421
            L       + PS ++ ++F  PE VK+    +R    + K EN+ R +L+ QS + +++
Sbjct: 75  RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +  I E+  KF ++IFQ  +LLVN+  HVL P+H+VL+  +K  LL+ Y +
Sbjct: 133 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 182

[100][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
           expressed n=1 Tax=Oryza sativa Japonica Group
           RepID=Q2QXY2_ORYSJ
          Length = 335

 Score =  103 bits (257), Expect = 9e-21
 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
 Frame = +2

Query: 71  VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247
           VPE  A+M+   + E  RL+  R+T MEMLRDRGY V + E+  +  EFR  + E    E
Sbjct: 123 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 182

Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421
            L       + PS ++ ++F  PE VK+    +R    + K EN+ R +L+ QS + +++
Sbjct: 183 RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 240

Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +  I E+  KF ++IFQ  +LLVN+  HVL P+H+VL+  +K  LL+ Y +
Sbjct: 241 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 290

[101][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
          Length = 227

 Score =  103 bits (257), Expect = 9e-21
 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
 Frame = +2

Query: 71  VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247
           VPE  A+M+   + E  RL+  R+T MEMLRDRGY V + E+  +  EFR  + E    E
Sbjct: 15  VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74

Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421
            L       + PS ++ ++F  PE VK+    +R    + K EN+ R +L+ QS + +++
Sbjct: 75  RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 132

Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +  I E+  KF ++IFQ  +LLVN+  HVL P+H+VL+  +K  LL+ Y +
Sbjct: 133 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 182

[102][TOP]
>UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative
           (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983
           RepID=C5LN15_9ALVE
          Length = 168

 Score =  103 bits (257), Expect = 9e-21
 Identities = 56/131 (42%), Positives = 86/131 (65%), Gaps = 5/131 (3%)
 Frame = +2

Query: 191 VNMSKDEFREKYGENMKRE----DLVINKAKKNKPSDQIYVLFPEEVK-VGIHVLRTYIN 355
           +N +K+ F +++ E  +R+    DL+I  +K++ PSDQ+ V FP+E K VG+  +RT   
Sbjct: 2   LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61

Query: 356 RMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLT 535
           +M+ + + RAILV Q  LT  +K  I E + +  +E+F E+EL+VN+  H LVPEH+ LT
Sbjct: 62  KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLT 121

Query: 536 DTEKKTLLERY 568
             EK+ LLERY
Sbjct: 122 AEEKRLLLERY 132

[103][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Babesia bovis RepID=A7APR4_BABBO
          Length = 205

 Score =  102 bits (255), Expect = 2e-20
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG--ENMKREDLVINKAKKN 277
           ++E  RL+R R+T  EML DRGY + + E   +  EF+ +Y   + ++ + L++   K +
Sbjct: 2   DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61

Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
           K +  +     E  K G+  +R    +M+  +++RAILV Q+ LT  +K+ I E A +  
Sbjct: 62  KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E F E ELLVN+  H LVP+H  LT  EK+TLL+RY
Sbjct: 122 IENFLETELLVNITKHELVPKHIPLTADEKQTLLQRY 158

[104][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
          Length = 210

 Score =  102 bits (254), Expect = 2e-20
 Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           E E  RLY++  T+ +M  DRG+ V    +NM+ D + E YGE   R++L     K +  
Sbjct: 4   EAERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGE-YPRKELSFPVQKVDDD 62

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK---F 454
           +D ++V FPE   V +  +++  +R+KS+N+ RAI+V Q  +   +K+ I  +  +   +
Sbjct: 63  NDGLFVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPY 122

Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            +E F EAEL+ NV  H LVP H++L ++EK+ LLERY
Sbjct: 123 IVETFAEAELVYNVTRHHLVPHHEILKESEKQQLLERY 160

[105][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
          Length = 210

 Score =  102 bits (254), Expect = 2e-20
 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 5/166 (3%)
 Frame = +2

Query: 92  MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVIN 262
           M   E  + R++R  KT  +++ DRGY V   E++++ D+F+  +   G N+ R  L   
Sbjct: 1   MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60

Query: 263 KAKKNKPSDQ--IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
            AK +  S++  IY+ F +E  VGI  +RT+++ +   N    IL+  +S+T  +   I 
Sbjct: 61  -AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIA 119

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            +  +F +E FQE++L+VN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 120 TVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKL 165

[106][TOP]
>UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4
           RepID=UPI00004E3EE0
          Length = 181

 Score =  101 bits (252), Expect = 4e-20
 Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
 Frame = +2

Query: 152 MLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIYVLFPEEVKVGI 331
           ML DR Y++  +E    ++ F       + RE+L +   KK+ P+D IYV FP+  KVG+
Sbjct: 1   MLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53

Query: 332 HVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI--FEMASKFHLEIFQEAELLVNVKDH 505
             ++ Y++ MK     RAI+V Q ++T  +K  +  F    K  LE F EAELLVN+  H
Sbjct: 54  TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHH 113

Query: 506 VLVPEHQVLTDTEKKTLLERYTL 574
            LVP+H +LT  EK  LL RY +
Sbjct: 114 QLVPKHILLTKEEKLELLTRYKM 136

[107][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
          Length = 218

 Score =  101 bits (252), Expect = 4e-20
 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S  E  + Y  R+T MEMLRDRGY V D ++N+S  +FR  YGE+   + L I+   +  
Sbjct: 17  SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76

Query: 281 PSDQIYVLFPEEVKVGIHVLRTY-INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            S +I V+F     V ++ +R    + +  EN+   ILV QS +T Q+   + E+ S F 
Sbjct: 77  SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAV-ELFS-FK 134

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +E+F+  +LLVNV  HVL P+HQVL D EK++LL+++++
Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSI 173

[108][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
           II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
          Length = 213

 Score =  101 bits (251), Expect = 5e-20
 Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 9/166 (5%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           +  ++RL+R  KTV EM+RDRGY +   EV+MS DEFR K  ++M R    +   + N  
Sbjct: 4   DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63

Query: 284 SDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
           ++ +         +V F +E  VGI  +R +   +  +N    I + Q+S+T  S N + 
Sbjct: 64  AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITP-SANKLI 122

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
              S   +E FQE +L+VN+  H LVP+H  L+  EKK LL+RY L
Sbjct: 123 PTVSPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRL 168

[109][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7QJL2_VITVI
          Length = 229

 Score =  100 bits (250), Expect = 6e-20
 Identities = 61/158 (38%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R+T++EMLRDRGY +   ++++S  +FR  Y +    + L I+ A ++ PS 
Sbjct: 31  ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90

Query: 290 QIYVLF--PEEVKV-GIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460
           +I V+F  P+ VKV  I  + T I  +  +++ + ILV Q+ +T+Q+   +   +  F +
Sbjct: 91  KILVIFCGPDVVKVNAIRSIATQI--VNKDSLSKLILVLQNHITSQALKAVDLFS--FQV 146

Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E FQ  +LLVN+  HVL P+H+VLTD EK  LL++Y+L
Sbjct: 147 EKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSL 184

[110][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
          Length = 215

 Score =  100 bits (250), Expect = 6e-20
 Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           E  ++RL+R  KTV EM+RDRGY +   E+++S ++F+ KY ++M +    +   + N  
Sbjct: 6   ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65

Query: 284 SDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
            + I         +V F +E  VG+  ++ ++  +  +N    I + QS +T  S N I 
Sbjct: 66  EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITP-SANKIL 124

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             A+   +E F EA L+VN+  H LVP+H  L++ EKK LL+RY L
Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRL 170

[111][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
          Length = 248

 Score =  100 bits (248), Expect = 1e-19
 Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R+TV+EML+DRGY +   E+ +S D+FR+ +G++   + L +       PS 
Sbjct: 50  ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKS-ENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466
           +I V+F     V ++ +R    ++ + E++   IL+ Q+ +T+Q+   +  ++  F +EI
Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167

Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           FQ  +LLVN   HVL P+HQVLTD +KK LL++Y +
Sbjct: 168 FQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDI 203

[112][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
          Length = 215

 Score =  100 bits (248), Expect = 1e-19
 Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283
           E  ++RL+R  +TV EM+RDRGY +   E+++S ++F+ KY ++M +    +   + N  
Sbjct: 6   ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65

Query: 284 SDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
            + I         +V F +E  VG+  ++ ++  +  +N    I + QS +T  S N I 
Sbjct: 66  EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITP-SANKIL 124

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             A+   +E F EA L+VN+  H LVP+H  L+D EKK LL+RY L
Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRL 170

[113][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9ST46_RICCO
          Length = 238

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
 Frame = +2

Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPS 286
           +E  R Y  R+TV+EMLRDRGY V   E+++S  EFR  +G N   + L  +    + PS
Sbjct: 39  HETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPS 98

Query: 287 DQIYVLFPEEVKVGIHVLRTYINR-MKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
            ++ VLF     + +  +R    + +  +++   ILV Q+ +T Q+   +     KF +E
Sbjct: 99  KRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAV--DLFKFKVE 156

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +FQ  +LLVN+  HVL P+HQVLTD EK+ LL+ Y +
Sbjct: 157 MFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCI 193

[114][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
           RepID=C5DNB3_LACTC
          Length = 215

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           +E  ++RL+R  KTV EM+RDRGY +   EV++S ++F+ KY ++M R    +   + N 
Sbjct: 5   NERNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64

Query: 281 PSD---------QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
             +          ++V F +E  VGI  ++ ++  +  +N    I V Q+ +T  +   +
Sbjct: 65  VEEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLL 124

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +A    +E F EA L+VN+  H LVP+H  L+D EKK LL RY L
Sbjct: 125 PSVAPA-TIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRL 170

[115][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
           RepID=Q4N141_THEPA
          Length = 205

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           ++E  RL+R R+T  EML DRGY +   E   +  EF+ +Y  + K R  +++  +++  
Sbjct: 2   DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
             +++ V F +E K  G+  +R    RM+  +++RAILV Q+ LT  +K+ I E   K  
Sbjct: 62  SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E F E ELLVN+  H LVP+H  LT  EK+ LL++Y
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKY 158

[116][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
          Length = 216

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 54/164 (32%), Positives = 102/164 (62%), Gaps = 9/164 (5%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLV--GDFEVNMSKDEFREKYGENMK--REDLVINKAKKN 277
           E+  L++IR+T+++MLRDR Y+V     ++ MS+  F +K+ +N +  R +L IN++K  
Sbjct: 7   EILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKWL 66

Query: 278 KPSDQIYVLFPEEVK----VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
           + + +I V+F E  K    +G+  +R +  R+K +    +I+V    LT+ +K  I  + 
Sbjct: 67  EENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSIN 126

Query: 446 S-KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           S    +E F E+EL+VN+ +H LVP+H+++++ E + L +RY++
Sbjct: 127 SLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSI 170

[117][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
          Length = 216

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R+TV+EML+DRGY V   E+++S  +FR  YG+N   E L  +   K+ PS 
Sbjct: 18  ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77

Query: 290 QIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           ++ V+F     VKVG+  L T +     +++   ILV Q+++T Q+   +     KF +E
Sbjct: 78  RMLVIFCGLGVVKVGMIRLIT-VQITDRDSLTGLILVLQNNITNQAMKAL--DLFKFKIE 134

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           IFQ  +LLVN+  H+L P+HQVL++  K+ LL++Y++
Sbjct: 135 IFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSI 171

[118][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
           RepID=Q5CNJ4_CRYHO
          Length = 205

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNKPSDQI 295
           R +R R+T+ EML DRGY+V   +       F+E++  + + R  +++  + +   + +I
Sbjct: 7   RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66

Query: 296 YVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQ 472
              F +E K  G+  +R  + +M    + RAIL+ Q+ LT  +K  I + A K ++E F 
Sbjct: 67  ICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFL 126

Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           E ELLVN+  H LVP+H +L+D EK  LL+RY +
Sbjct: 127 ENELLVNITKHELVPKHILLSDDEKLQLLDRYKI 160

[119][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1J2_ARATH
          Length = 222

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S  E  R Y  R+  ++MLRDRGY V D ++N+S  +FR  YGE    + L I+   ++ 
Sbjct: 21  SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYI-NRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            + ++ ++F     V ++ +R+ + + +  E +   ILV Q+ +T Q+   I E+ S F 
Sbjct: 81  STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI-ELFS-FK 138

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +EIFQ  +LLVN+  H L P+HQVL D EK TLL+++++
Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSI 177

[120][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
           Tax=Theileria annulata RepID=Q4U8E3_THEAN
          Length = 205

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           ++E  RL+R R+T  EML DRGY +   E   +  EF+ +Y    K R  +++  + +  
Sbjct: 2   DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61

Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
             +++ V F +E K  G+  +R    RM+  +++RAILV Q+ LT  +K+ I E   K  
Sbjct: 62  AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           +E F E ELLVN+  H LVP+H  LT  EK+ LL++Y
Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKY 158

[121][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
           bicolor RepID=C5Y4H1_SORBI
          Length = 263

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  RL+  R+T +EMLRDRGY V + E+  +  EFR  + +  + E L  +    + PS 
Sbjct: 65  ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124

Query: 290 QIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           ++ V+F  PE VK+    +R     +K EN+ R IL+ Q  + ++++  I E+   + ++
Sbjct: 125 KVKVVFCPPEPVKIA--AIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEI-FPYKVD 181

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            FQ  ELLVN+  H L P+HQVLT  EK  LL+ Y +
Sbjct: 182 TFQITELLVNITKHALKPKHQVLTAEEKAKLLKEYNV 218

[122][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           tropicalis MYA-3404 RepID=C5MBX4_CANTT
          Length = 214

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKAK 271
           ++  ++RL+R  KTV EM+RDRGY +   E++M+ +EFR K  ++M   +R+ +      
Sbjct: 4   TDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQP 63

Query: 272 KNKPSDQ------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
             +  ++      ++V F +E  VGI  +R +   +  +N    + + Q+S+T  S N +
Sbjct: 64  TGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITP-SANKL 122

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
               S   +EIFQE++L+VN+  H LVP+H  L+  EK  LLERY L
Sbjct: 123 IPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRL 169

[123][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
           albicans RepID=C4YG42_CANAL
          Length = 214

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKA- 268
           ++  ++RL+R  KTV EM+RDRGY +   E++M+ +EFR K  ++M   +R+ +      
Sbjct: 4   TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63

Query: 269 -----KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
                +K   +  ++V F +E  VGI  +R +   +  +N    I + Q+S+T  S N +
Sbjct: 64  TAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTP-SANKL 122

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
               S   +EIFQE +L+VN+  H LVP+H  L   EKK LL RY L
Sbjct: 123 IPTVSPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRL 169

[124][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
           Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
          Length = 222

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S  E  R Y  R+  +++LRDRGY V D ++N+S  +FR  YGE    + L I+   ++ 
Sbjct: 21  SSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYI-NRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
            + ++ ++F     V ++ +R+ + + +  E +   ILV Q+ +T Q+   I E+ S F 
Sbjct: 81  STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI-ELFS-FK 138

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +EIFQ  +LLVN+  H L P+HQVL D EK TLL+++++
Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSI 177

[125][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
           Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
          Length = 214

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKA- 268
           ++  ++RL+R  KTV EM+RDRGY +   E++M+ +EFR K  ++M   +R+ +      
Sbjct: 4   TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63

Query: 269 -----KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
                +K   +  ++V F +E  VGI  +R +   +  +N    I + Q+S+T  S N +
Sbjct: 64  TGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTP-SANKL 122

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
               S   +EIFQE +L+VN+  H LVP+H  L   EKK LL RY L
Sbjct: 123 IPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRL 169

[126][TOP]
>UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
           n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40
          Length = 119

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSK 424
             + P+DQ++V FPEE KVGI  ++ Y  RM+ EN+ RA++V Q  +T  +K
Sbjct: 64  HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115

[127][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
           Tax=Medicago truncatula RepID=Q2HW77_MEDTR
          Length = 224

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S  E  R +  RKT+M+ML DRGY V + ++ +S  EFR ++GE  K   L ++ + ++ 
Sbjct: 23  SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82

Query: 281 PSDQIYVLFP---EEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451
           PS ++ V+FP   +  K  + V+++ I  +  E + R ILV QS +T+ ++  +      
Sbjct: 83  PSIKVQVVFPGTDDIRKSNLIVIQSQI--VDKERLSRLILVMQSKMTSYARKELEN--CP 138

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           F +EI Q  +LLVNV  HVL P+++VLT  EK+ LL +Y
Sbjct: 139 FKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKY 177

[128][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
          Length = 214

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK--REDLVINKAKK 274
           ++  ++RL+R  KTV EM+RDRGY +   E++MS  EFR +  ++M   +  L+  +A  
Sbjct: 4   TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63

Query: 275 NKPS-------DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
              S         ++V F +E  VGI  +R +   +  +N    I + QSS+T  S N +
Sbjct: 64  TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITP-SANKL 122

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
               S   +E FQE +L+VN+  H LVP+H  L   EKK LLERY L
Sbjct: 123 IPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRL 169

[129][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
           DSM 70294 RepID=A7TEH4_VANPO
          Length = 215

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           SE  ++RL+R  +TV EM+RDRGY +   E+++S ++F+ KY ++M R    +   + N 
Sbjct: 5   SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64

Query: 281 PSD---------QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
             +          ++V F +E  VG+  ++ ++  ++ +N    I V Q+++T  +   +
Sbjct: 65  TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +     +E F EA L+VN+  H LVP+H  L++ EKK LL++Y L
Sbjct: 125 PSIPPA-TIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRL 170

[130][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
          Length = 215

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVI------- 259
           +E  ++RL+R  +TV EM+RDRGY +   EV++S ++F+ KY ++M R    +       
Sbjct: 5   NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64

Query: 260 --NKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
                KK+     ++V F +E  VGI  ++ ++  +  +N    I + Q+ +T  +   +
Sbjct: 65  TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +A    +E F E  L+VN+  H LVP+H  L+D EKK LL+RY L
Sbjct: 125 PSVAPA-TIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRL 170

[131][TOP]
>UniRef100_B7T1F2 RNA polymerase II (Fragment) n=1 Tax=Oreochromis niloticus
           RepID=B7T1F2_ORENI
          Length = 108

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 45/107 (42%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKAKKNKP 283
           RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A  + P
Sbjct: 1   RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSK 424
           +DQ++V FPEE KVGI  ++ Y  RM+ EN+ RAI+V Q  +T  +K
Sbjct: 61  TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107

[132][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6TJI5_MAIZE
          Length = 264

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 56/155 (36%), Positives = 86/155 (55%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  RL+  R+T +EMLRDRGY V + E+  +  EFR  +    + E L  +    + PS 
Sbjct: 66  ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           ++ V+F     V I  +R     +K EN+ R IL+ Q  + + ++  I E+  +F ++ F
Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           Q  ELLVN+  HVL P+H+VLT   K  LL+ Y +
Sbjct: 185 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 219

[133][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FYH9_MAIZE
          Length = 248

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 56/155 (36%), Positives = 86/155 (55%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  RL+  R+T +EMLRDRGY V + E+  +  EFR  +    + E L  +    + PS 
Sbjct: 50  ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           ++ V+F     V I  +R     +K EN+ R IL+ Q  + + ++  I E+  +F ++ F
Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           Q  ELLVN+  HVL P+H+VLT   K  LL+ Y +
Sbjct: 169 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 203

[134][TOP]
>UniRef100_B7Q5X9 RNA polymerase, 25-kDa subunit, putative n=1 Tax=Ixodes scapularis
           RepID=B7Q5X9_IXOSC
          Length = 91

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 45/91 (49%), Positives = 63/91 (69%)
 Frame = +2

Query: 293 IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQ 472
           ++V FP+E K+GI  ++TY  RM+ EN+ RAI+V Q  +T  +K  + +MA K+ LE F 
Sbjct: 1   MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60

Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           E+ELL+N+ +H LVPEH VLT  EK  LL R
Sbjct: 61  ESELLINITEHELVPEHVVLTPEEKAELLAR 91

[135][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
           Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
           513.88 RepID=A2QAL5_ASPNC
          Length = 235

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 24/187 (12%)
 Frame = +2

Query: 86  ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265
           A  V ++ EMTRL+R  +TV EML DRGY V + EV M   EF++KY + +   D   NK
Sbjct: 7   AGSVDADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDR--NK 64

Query: 266 AK------------------KNKPSDQ-----IYVLF-PEEVKVGIHVLRTYINRMKSEN 373
            K                  K+ P+ Q     IYV F P+   VG   +RT+ + +   N
Sbjct: 65  MKISARPTEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENN 124

Query: 374 VYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKT 553
            +  + + Q+ ++  +   +  M  +   E FQE +LLVN+  H LVP+H +L+  EK  
Sbjct: 125 FHTGVFITQTPISPSAVRLLSSMPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPDEKAR 183

Query: 554 LLERYTL 574
           LLERY L
Sbjct: 184 LLERYRL 190

[136][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001985D3D
          Length = 1260

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 54/155 (34%), Positives = 85/155 (54%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R+T+ +ML DRGY V   E+  S  +FR  +G N     L I     + PS 
Sbjct: 24  ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 83

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           +I V+F    ++   V+R    ++  E ++R ILV QS + + ++  + E   K  +E F
Sbjct: 84  KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 141

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           Q  ELL+N+  HV VP+H++L+  EK+ L+ +Y L
Sbjct: 142 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 176

[137][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
           n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
          Length = 221

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 54/155 (34%), Positives = 85/155 (54%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R+T+ +ML DRGY V   E+  S  +FR  +G N     L I     + PS 
Sbjct: 24  ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 83

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           +I V+F    ++   V+R    ++  E ++R ILV QS + + ++  + E   K  +E F
Sbjct: 84  KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 141

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           Q  ELL+N+  HV VP+H++L+  EK+ L+ +Y L
Sbjct: 142 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 176

[138][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
           RepID=C5DR69_ZYGRC
          Length = 215

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           +E  ++RL+R  KTV EM++DRGY +   E+ +  ++F+ KY ++M R    +   + N 
Sbjct: 5   NERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNP 64

Query: 281 PSDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
             + I         +V F +E  VG+  ++T++  ++ +N    I V Q+++T  +   +
Sbjct: 65  TEESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLV 124

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +     +E F EA L+VN+  H LVP+H   ++ EK+ LL+RY L
Sbjct: 125 PSIPPA-TIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRL 170

[139][TOP]
>UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN
          Length = 236

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 24/182 (13%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK--- 271
           ++ EMTRL+R  +TV EML DRGY V + E+ +S DEFR +Y + +   D   NK K   
Sbjct: 13  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDR--NKMKISA 70

Query: 272 ---------------KNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388
                           +KP+       IYV F  +++ VG   +R + + +  +N +  I
Sbjct: 71  RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130

Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            V Q+ ++  +   +  +  +F  E FQE ELLVN+  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 569 TL 574
            L
Sbjct: 190 RL 191

[140][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
           Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
          Length = 215

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           +E  ++RL+R  +TV EM++DRGY +   EV +  ++F+ KY ++M R    +   + N 
Sbjct: 5   NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64

Query: 281 PSDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
             + I         +V F +E  VG+  ++T++  ++ +N    I V Q+++T  +   +
Sbjct: 65  TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +     +E F EA L+VN+  H LVP+H  L+  EK+ LL+RY L
Sbjct: 125 PSIPPA-TIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRL 170

[141][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
          Length = 223

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
 Frame = +2

Query: 125 YRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIYVL 304
           Y  R+T MEMLRDRGY + + ++N++  EFR  YG+    + L I+    +  S +I V+
Sbjct: 29  YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88

Query: 305 FPEEVKVGIHVLRTY-INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAE 481
           F     V +  +R    + +  EN+   ILV QS +T Q+   + E+ S F +E+FQ  E
Sbjct: 89  FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAV-ELFS-FKVELFQLTE 146

Query: 482 LLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           LLVN+  HVL P+H VL + EK++L +++++
Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSI 177

[142][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
           RepID=B9RGC5_RICCO
          Length = 239

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  RKTVMEMLRDRGY V D E+  S  EF  ++G+N     L I+ +  + P  
Sbjct: 41  ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKS-ENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466
           ++ V+F    ++ +  +R  + ++K+ E++   IL+ QS +   ++  + +  SK  +EI
Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEI 158

Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571
           F  ++LLVN+  HVL P H+VLT  +K+ LL +++
Sbjct: 159 FHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFS 193

[143][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
           III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
          Length = 214

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
 Frame = +2

Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKAKK- 274
           ++RL+R  +TV EM  DRGY +   E++ S +EFR K  ++M     K    + N   + 
Sbjct: 8   ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67

Query: 275 -NKPSD--QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
             K SD   ++V F +E  VGI  +R +  R++ +N    I + Q+++T  S N +    
Sbjct: 68  LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITP-SANKMIPTV 126

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           S   +E FQE++L+VN+  H LVP+H  L+D EK  LL+RY L
Sbjct: 127 SPAIIETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKL 169

[144][TOP]
>UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus
           RepID=C0NL28_AJECG
          Length = 236

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 24/182 (13%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK--- 271
           ++ EMTRL+R  +TV EML DRGY V + E+ +  DEFR +Y + +   D   NK K   
Sbjct: 13  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70

Query: 272 ---------------KNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388
                           +KP+       IYV F  +++ VG   +R + + +  +N +  I
Sbjct: 71  RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130

Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            V Q+ ++  +   +  +  +F  E FQE ELLVN+  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 569 TL 574
            L
Sbjct: 190 RL 191

[145][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
           dermatitidis RepID=C5G7M7_AJEDR
          Length = 236

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 24/182 (13%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK-KN 277
           ++ EMTRL+R  +TV EML DRGY V + E+ +  DEFR +Y + +   D   NK K   
Sbjct: 13  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70

Query: 278 KPSD----------------------QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAI 388
           +PS                        IYV F P+   VG   +R + + +  +N +  I
Sbjct: 71  RPSQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGI 130

Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            + Q+ ++  +   +  +  +F  E FQE ELLVN+  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FISQTPISPSAIRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189

Query: 569 TL 574
            L
Sbjct: 190 RL 191

[146][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6SXN9_SOYBN
          Length = 237

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 55/170 (32%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
 Frame = +2

Query: 77  EGCATMVFSEN---EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247
           +GC +  F +N   E  R Y  R+T +EML+DRGY +   E+++S  +FR+ +G+    +
Sbjct: 26  KGCLSK-FVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPD 84

Query: 248 DLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRA-ILVCQSSLTTQSK 424
            L ++       S +I V+F     V +  +R    ++ + +     IL+ ++ +T+Q+ 
Sbjct: 85  RLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQAL 144

Query: 425 NFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +   +  F +EIFQ  +LLVN+  HVL P+HQVLTD +K  LL++Y +
Sbjct: 145 KAVNLFS--FKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNI 192

[147][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb01 RepID=C1GUJ0_PARBA
          Length = 236

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDL--------- 253
           ++ EMT+L+R  +TV EML DRGY V + E+ +  DEFR +Y + +   D          
Sbjct: 13  ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72

Query: 254 ------------VINKAKKNKPSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILV 394
                        ++K         IYV F  +++ VG   +R + + +  +N +  I +
Sbjct: 73  SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFI 132

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            Q+ ++  +   +  +  +F  E FQE ELLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 191

[148][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Candida glabrata RepID=RPAB1_CANGA
          Length = 215

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 48/167 (28%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           ++  ++RL+R  +TV EM+RDRGY +   E++++ ++F+ KY ++M R    +   + N 
Sbjct: 5   NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64

Query: 281 PSDQ---------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
             +          ++V F +E  VG+  ++T++  ++ +     I + Q+++T  +   +
Sbjct: 65  TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +     +E F EA L+VN+  H LVP+H  L + EK  LL+RY L
Sbjct: 125 PSIPPA-TIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRL 170

[149][TOP]
>UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides
           RepID=C5PAC2_COCP7
          Length = 236

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 22/180 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE------------NMKR 244
           ++ EMTRL+R  +TV EML DRGY V + EVN+   EFR KY +            + + 
Sbjct: 13  ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72

Query: 245 EDLVINK----AKKNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILV 394
              +I K    A   KP+       IYV F  + + VG   +R + + +  +N +  I +
Sbjct: 73  SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            QS ++  +   +  +  +F  E F E ELLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 133 TQSPISPSAIRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191

[150][TOP]
>UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE
          Length = 239

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-------------- 238
           +  EMTRL+R  KTV EML DRGY V + EV +S ++FR KY + +              
Sbjct: 13  ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72

Query: 239 -KREDLVINK-------AKKNKPSD--QIYVLFPEEVK-VGIHVLRTYINRMKSENVYRA 385
            +    +I K       AK N  ++   IYV F  + + VG   +R + + +  +N +  
Sbjct: 73  ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132

Query: 386 ILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           I + QS ++  +   +  +  +F  E F E ELLVN+  H LVP+H +L+  EKK LL R
Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191

Query: 566 YTL 574
           Y L
Sbjct: 192 YRL 194

[151][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
           54-1255 RepID=B6HAG0_PENCW
          Length = 234

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 22/180 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG----------------- 229
           +E EMTRL+R  +TV E+L DRGY V D E+ +  ++FR KY                  
Sbjct: 11  AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70

Query: 230 -ENMKREDLVI-NKAKKNKPSD--QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394
            E MK +   + +KA  N   D   IYV F P+   VG   +R + + +   N +  I +
Sbjct: 71  TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            Q+ ++  +   +  +  +   E FQE +LLVN+  H LVP+H +L+  EK  LLERY L
Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERYRL 189

[152][TOP]
>UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
           B05.10 RepID=A6SPK6_BOTFB
          Length = 242

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRED----------- 250
           + E  +L+R  +TV EM++DRGYL+ + EVNMS D F+ K+  N    D           
Sbjct: 16  DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75

Query: 251 -------LVINKAKKNKPSDQ------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAIL 391
                   V   A+   P+        I  L   +V +GI  +RT+   +   N    IL
Sbjct: 76  EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135

Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571
           +   + +  ++  I  +AS+  +E F E +LLVN+  H LVP+H +L+  E+  LL RY 
Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYR 195

Query: 572 L 574
           L
Sbjct: 196 L 196

[153][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
           Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
          Length = 212

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 9/167 (5%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY----GENMKREDLVI--- 259
           S ++  +L+++ +T  E+++DRGY + D EVN+S D+F  +     G+ +K++   +   
Sbjct: 2   SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASP 61

Query: 260 --NKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433
                +K      I+V F EE  V +  +R +   +        ILV ++++T  +   I
Sbjct: 62  SPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLI 121

Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +A    ++ FQE +LLVN+  HVLVP H  L+  EKK LLERY L
Sbjct: 122 PSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRL 167

[154][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb18 RepID=C1FYH2_PARBD
          Length = 236

 Score = 87.0 bits (214), Expect = 9e-16
 Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 24/182 (13%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           ++ EMT+L+R  +TV EML DRGY V + E+ +  +EFR +Y + +   D   NK K + 
Sbjct: 13  ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDR--NKMKISA 70

Query: 281 PSDQ-----------------------IYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388
              Q                       IYV F  +++ VG   +R + + +  +N +  I
Sbjct: 71  RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130

Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            + Q+ ++  +   +  +  +F  E FQE ELLVN+  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189

Query: 569 TL 574
            L
Sbjct: 190 RL 191

[155][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
          Length = 233

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R+TV+EML+DRGY V D E+N S  EFR  +G +   + L  + + ++ P  
Sbjct: 35  ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94

Query: 290 QIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463
           +  V+F   +E+K   ++   Y   +  E+++  IL+ QS +   +K  + +    F +E
Sbjct: 95  KTLVMFLGTDEIKTA-NIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKF--PFKVE 151

Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +FQ  +LLVN+  HVL P+  +LT  +K+ ++ +Y L
Sbjct: 152 VFQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKL 188

[156][TOP]
>UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7ECH0_SCLS1
          Length = 242

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN-------------MKR 244
           + E  +L+R  +TV EM++DRGYL+ + EVNMS D F+ K+  N                
Sbjct: 16  DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75

Query: 245 EDLVINKAKKNKPSDQ-----------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAIL 391
           E ++   A    P +            +  L   +V +GI  +RT+   +   N    IL
Sbjct: 76  EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135

Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571
           +     +  ++  I  +AS   +E F E +LLVN+  H LVP+H +L+  E+  LL RY 
Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYR 195

Query: 572 L 574
           L
Sbjct: 196 L 196

[157][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1D205_NEOFI
          Length = 234

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 22/180 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN- 277
           ++ EMTRL+R  +TV EML DRGY V + E+ +  DEFR+KY + +   D    K     
Sbjct: 11  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70

Query: 278 ---------------KPSDQ-----IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394
                           P  Q     IYV F  +   VG   +R + + +   N +  + +
Sbjct: 71  TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            Q+ ++  +   +  +  +   E FQE +LLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189

[158][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
           Pt-1C-BFP RepID=B2VUN9_PYRTR
          Length = 235

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 30/184 (16%)
 Frame = +2

Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN---KP 283
           + RL+R+ KT  EM+ DRGY+V + ++NMS D+F  KY     RED   ++++ N   +P
Sbjct: 11  LMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYA----REDGEPDRSRLNFSCQP 66

Query: 284 SDQ----------------------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVC 397
           S++                      I+V F  +  VG+  LR Y+  + + + +  I++ 
Sbjct: 67  SEEMLAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMIT 126

Query: 398 QSSLTTQSKNFIFEMAS-----KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLE 562
              +T  +   +    S     K  +E+F E +LLVN+  H LVP+H +L+D EK+ LL+
Sbjct: 127 VKPMTGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQ 186

Query: 563 RYTL 574
           RY L
Sbjct: 187 RYRL 190

[159][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
           Tax=Emericella nidulans RepID=C8VQY1_EMENI
          Length = 235

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 22/180 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY-GEN--MKREDLVI---- 259
           +E E  R++R  +TV EML+DRGY V + EV +  DEF+ KY GE     RE L I    
Sbjct: 12  AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71

Query: 260 NKAKKNK------PSDQ--------IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394
            +A K K      PS++        IY+ F P++  +G   +RT+ + +   N +  I +
Sbjct: 72  TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            ++ ++  +   +  +  +   E FQE +LLVN+  H LVP+H +L+  EK  LL+RY L
Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRL 190

[160][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA7_PENMQ
          Length = 236

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 23/181 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVIN--- 262
           + NEM RL+R  +TV EMLRDRGY + + E+ +   +F  K+ ++     RE + I    
Sbjct: 12  ARNEMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIP 71

Query: 263 ----KAK----KNKPSD--------QIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAIL 391
               KAK    K +P+D        QI+V F E+   VG   +R + + +   N +  I 
Sbjct: 72  SEAMKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIF 131

Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571
           + +++++  +   +   A     E FQE++LLVN+  H LVP+H +L+  EK  LLERY 
Sbjct: 132 ITRTAISPSAVRLL-NSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190

Query: 572 L 574
           L
Sbjct: 191 L 191

[161][TOP]
>UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
           RepID=B6SJT2_MAIZE
          Length = 154

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 51/142 (35%), Positives = 77/142 (54%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  RL+  R+T +EML DRGY V + E+  +  EFR       + E L       + PS 
Sbjct: 9   ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68

Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           ++ V+F     V I  +R     +K EN+ R IL+ Q  + + ++  I E+  +F ++ F
Sbjct: 69  KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127

Query: 470 QEAELLVNVKDHVLVPEHQVLT 535
           Q  ELLVN+  HVL P+H+VLT
Sbjct: 128 QITELLVNITKHVLKPKHEVLT 149

[162][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
          Length = 287

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 8/159 (5%)
 Frame = +2

Query: 122 LYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKR-----EDLVINKAKKN 277
           L  IR  + +   D GY + D E+NM+ DEF+ K    GE  ++            A+K 
Sbjct: 85  LQTIRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKF 144

Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457
                ++V F +E  VGI  +R +   +  +N    I + Q+S+T  S N +    S   
Sbjct: 145 PEMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITP-SANKLIPTVSPAT 203

Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +E+FQE++L+VN+  H LVP+H  L+  EKK LL+RY L
Sbjct: 204 IEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRL 242

[163][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
           RepID=A1CP51_ASPCL
          Length = 234

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN- 277
           ++ EMTRL+R  +TV EML DRGY V + E+ +  +EFR KY + +   D    K     
Sbjct: 11  ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70

Query: 278 ---------------KPSDQ-----IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394
                           P  Q     IYV F  +   VG   +R + + +   N +  + +
Sbjct: 71  TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            Q+ ++  +   +  +  +   E FQE +LLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189

[164][TOP]
>UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina
           RepID=B2AZ24_PODAN
          Length = 235

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 22/179 (12%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY--GENMKREDLVINKAKKN 277
           + E++RL+R  +T+ EM+ DRGY + + E+ M  DEF+ K+  G+      ++   A+ +
Sbjct: 12  DKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPS 71

Query: 278 K----------------PSDQ---IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVC 397
                            P+ +   I+V F PE+  +GI V++ ++    + +    ILV 
Sbjct: 72  ASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGILVT 131

Query: 398 QSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +L+ Q++  +   +    +E F E +LLVN+  H LVP H +L+  EK  LL+RY L
Sbjct: 132 AVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYRL 190

[165][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
           VaMs.102 RepID=C9S900_9PEZI
          Length = 231

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY-------------------GE 232
           E+ R +R  +TV EM  DRGY + + E+ +S D FR +Y                    +
Sbjct: 10  EVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSSD 69

Query: 233 NMKREDLVINKAKKNKPSD--QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQS 403
            + R     + A  N   D   IY+ F  E+  +G+  LR ++  +   +    I+V  S
Sbjct: 70  MLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTSS 129

Query: 404 SLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            LT+  +  +  + S   +E F E +LLVN+  H LVP+H +L+  EK  LL+RY L
Sbjct: 130 PLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRYRL 186

[166][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
           canis CBS 113480 RepID=C5FC74_NANOT
          Length = 236

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 24/182 (13%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK--- 271
           ++ EM RL+R  +TV E+L DRGY V + EV +S  EFR +Y + +   D   NK +   
Sbjct: 13  ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDR--NKMRISA 70

Query: 272 ---------------KNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388
                           +KP+       I+V F  E + VG   +R +   +  +N +  I
Sbjct: 71  RPSQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGI 130

Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
            + QS ++  +   +  +  +F  E F E ELLVN+  H LVP+H +L+  EKK LL+RY
Sbjct: 131 FITQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189

Query: 569 TL 574
            L
Sbjct: 190 RL 191

[167][TOP]
>UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500
           RepID=B8M3B9_TALSN
          Length = 236

 Score = 81.6 bits (200), Expect = 4e-14
 Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVIN--- 262
           + NEM RL+R  +TV EMLRDRGY + + EV +   +F  K+G       R  + I    
Sbjct: 12  ARNEMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMP 71

Query: 263 ----KAK----KNKPSDQ--------IYVLFPEEVK-VGIHVLRTYINRMKSENVYRAIL 391
               KAK    K + SD         IYV F E+   VG   +R + + +   N +  I 
Sbjct: 72  SEAMKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIF 131

Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571
           + +++++  +   +         E FQE++LLVN+  H LVP+H +L+  EK  LLERY 
Sbjct: 132 ITRTAISPSAMRLLSSAVGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190

Query: 572 L 574
           L
Sbjct: 191 L 191

[168][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
           Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
          Length = 202

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280
           S  + +  +RI  T+ +M+RDRGY V    + +S D+F + Y  N       +N+   N 
Sbjct: 2   SSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSNM 57

Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS--KNFIFEMASKF 454
             ++I   F    ++    ++T I  M    V RAI++    + T +  +N     +S  
Sbjct: 58  EGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGK 117

Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            +E F   E+++N+ +H LVP+H+VLT+ EK+ +L+RY +
Sbjct: 118 TIEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNV 157

[169][TOP]
>UniRef100_UPI0000163400 DNA binding / DNA-directed RNA polymerase n=1 Tax=Arabidopsis
           thaliana RepID=UPI0000163400
          Length = 87

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 2/78 (2%)
 Frame = +2

Query: 338 LRTYINRMKSENVYRAILVCQS--SLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVL 511
           ++ YI+++KS NV+RAILV Q   + + Q+  F+  +   FH+E+FQE EL+VNVK+HV 
Sbjct: 1   MKKYIDQLKSANVFRAILVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVF 60

Query: 512 VPEHQVLTDTEKKTLLER 565
           VPEHQ LT  EK+  LER
Sbjct: 61  VPEHQALTTEEKQKFLER 78

[170][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
          Length = 234

 Score = 77.4 bits (189), Expect = 7e-13
 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 26/184 (14%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN- 277
           +  E++RL+R  +TV EM++DRGY + + EV +S + F+ +Y      ED   N+AK   
Sbjct: 10  ASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEY----TNEDGTPNRAKLQF 65

Query: 278 --KPSDQIYVLFP-----------------------EEVKVGIHVLRTYINRMKSENVYR 382
             +PS+ +   F                        E+  +G+ V++ ++          
Sbjct: 66  SARPSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKA 125

Query: 383 AILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLE 562
            I +    L+ Q++  +   +    +E F E +LLVN+  H LVP+H +L+  EK  LL+
Sbjct: 126 GIFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLK 185

Query: 563 RYTL 574
           RY L
Sbjct: 186 RYRL 189

[171][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
           thaliana RepID=Q9M1H8_ARATH
          Length = 233

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289
           E  R Y  R T  EMLRDRGY V + E++++  EFR  +GE  + E L I    ++ P  
Sbjct: 35  ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94

Query: 290 QIYVLFPEEVKVGIHVLRT-YINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466
           +I V+F     + +  +R  +I    +  ++  ILV QS +   ++  +      F +E 
Sbjct: 95  KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL--TTFPFTVET 152

Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           F   +LLVN+  H+  P+ ++L   EK+ LL ++ L
Sbjct: 153 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHAL 188

[172][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UZB4_PHANO
          Length = 277

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 30/184 (16%)
 Frame = +2

Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN---KP 283
           + R++R+ +T  EM+ +RGY V D E+ MS + F +KY     RED   ++++ N    P
Sbjct: 53  LIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYA----REDGEPDRSRLNFSSTP 108

Query: 284 SDQ----------------------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVC 397
           S++                      I+  F  +  VG+  LR ++N + S + Y  I+V 
Sbjct: 109 SEEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVT 168

Query: 398 QSSLTTQSKNFIFEMAS-----KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLE 562
              +T  +   +   ++     K  +E+F E +LLVN+  H LVP+H +L+  EK  LL 
Sbjct: 169 VKPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLT 228

Query: 563 RYTL 574
           RY L
Sbjct: 229 RYRL 232

[173][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
           RepID=C4VBP1_NOSCE
          Length = 204

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 48/149 (32%), Positives = 83/149 (55%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIY 298
           + +  R T++EM  +RGY   D +V +S D F  ++  +  ++   IN   KN   + + 
Sbjct: 7   KFFLCRNTLVEMCTERGYTT-DQKV-LSYDNFIAQF-PSCDKDVNSINFVCKNA-DNLVG 62

Query: 299 VLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEA 478
           + F ++ K+G   +   I   KS N+Y  ILV    +++ S+N +    S   +EIF++ 
Sbjct: 63  IHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIV--NVSDLKIEIFKDE 120

Query: 479 ELLVNVKDHVLVPEHQVLTDTEKKTLLER 565
           EL+ N+  HV VP H++L DTEK ++LE+
Sbjct: 121 ELMFNITKHVSVPRHRILNDTEKNSILEK 149

[174][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
           RepID=C7Z7I7_NECH7
          Length = 234

 Score = 73.9 bits (180), Expect = 8e-12
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY------------------GEN 235
           E+ RL+R  +TV EM+ DR Y + + EV +S D FR++Y                   E+
Sbjct: 14  EVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSINRAKLQFSARPSES 73

Query: 236 MKREDLVINKAKKNKPSDQ---IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSS 406
           M R+      A K  P      I+V F  +   G+  +R +   + + +    I+V    
Sbjct: 74  MLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIMVTHVP 133

Query: 407 LTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           L+  ++  +  + S   +E F E +LLVN+  H LVP+H +L+  EK  LL+RY L
Sbjct: 134 LSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYRL 189

[175][TOP]
>UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE
          Length = 176

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 5/168 (2%)
 Frame = +2

Query: 86  ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG-----ENMKRED 250
           A    +++ + RL+R+R T+ ++ +DRGY V   ++ ++++ F E++G     E  +R D
Sbjct: 2   AEEALNQSLLYRLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSD 61

Query: 251 LVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNF 430
           L     + + P+DQ+ V F  + KVGI V+R                             
Sbjct: 62  LDFVVQRASDPTDQLGVYFANDPKVGIAVVR----------------------------- 92

Query: 431 IFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
                     + F+E EL+VNV  H LVP+H + T  EK  LLERY L
Sbjct: 93  ----------DFFEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKL 130

[176][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023E584
          Length = 253

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 25/180 (13%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE-------NMKREDLVINK- 265
           E+ RL+R  +TV EM+ DR Y + + EV +S D FR++Y         N  R  L  +  
Sbjct: 14  EVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSAR 73

Query: 266 ---------------AKKNKPSD--QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILV 394
                          A  +  +D   I++ F  +   G+  +R + + + S N    I++
Sbjct: 74  PSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIMI 133

Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
               L+  ++  +  + S   +E F E +LLVN+  H LVP+H +L+  EK  LL+RY L
Sbjct: 134 THVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYRL 193

[177][TOP]
>UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN
          Length = 219

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 6/166 (3%)
 Frame = +2

Query: 95  VFSENEMTRLYRIRKTVMEMLRDRG--YLVGDFEVNMSKDEFREKYGENMKREDLVINKA 268
           V ++ EMTRL+R  +TV EML+DR     +     + +K + + +  E M+ +   + K 
Sbjct: 10  VDADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTPLTKQ 69

Query: 269 KKNK-PSD--QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
            ++  P+D   IYV F P+   VG   +R + + +   N +  I + Q+ ++  +   + 
Sbjct: 70  GQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVRLLS 129

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            +  +   E FQE +LLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 130 GVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRL 174

[178][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
           RepID=A4QW70_MAGGR
          Length = 259

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE---NMKREDLVINK-------- 265
           +L+R  +T+ +ML DRGY + + E N+S + F   + +   N+ +  L  +         
Sbjct: 12  KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71

Query: 266 --AKKNKPSD--------QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTT 415
             A+   P+D         I+V F  E K+G+   + ++  +        ILV Q +L++
Sbjct: 72  LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131

Query: 416 QSKNFIFEMASKFH-LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            ++  +    S  + +E F   +LLVN+  H LVP+H +L+  EKK LLERY L
Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRL 185

[179][TOP]
>UniRef100_Q4YN15 DNA-directed RNA polymerase 2, putative (Fragment) n=1
           Tax=Plasmodium berghei RepID=Q4YN15_PLABE
          Length = 107

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           E+ +TR Y+ RKT  EML DRGY++   E   +   F+E + EN K R  + I  + KN 
Sbjct: 2   EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61

Query: 281 PSDQIYVLFPEEV-KVGIHVLRTYINRMKSENVYRAILVCQSSLT 412
            +++I V F +EV K G+  LR    +M  +++ RAILV Q++LT
Sbjct: 62  ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLT 106

[180][TOP]
>UniRef100_B5LZ31 RNA polymerase II (Fragment) n=1 Tax=Psetta maxima
           RepID=B5LZ31_PSEMX
          Length = 87

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
 Frame = +2

Query: 188 EVNMSKDEFREKYGENM-----KREDLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYI 352
           E++ + DEF+ ++G+       +R DL +  A  + P+DQ++V FPEE KVGI  ++ Y 
Sbjct: 3   ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62

Query: 353 NRMKSENVYRAILVCQSSLTTQSK 424
            RM+ EN+ RAI+V Q  +T  +K
Sbjct: 63  QRMQEENITRAIIVVQMGMTPSAK 86

[181][TOP]
>UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2H038_CHAGB
          Length = 220

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 8/163 (4%)
 Frame = +2

Query: 110 EMTRL-YRIRKTVMEMLRDR---GYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN 277
           E+TRL Y + +  +++  DR    Y   D   N SK +F  +  E+M ++          
Sbjct: 13  EVTRLDYELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSNP 72

Query: 278 KPSDQ---IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445
            P+ +   I+V F PE+  +GI+V++ ++    + N    ILV   +L+ Q++  +   +
Sbjct: 73  DPAPECGTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVTS 132

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
               +E F E +LLVN+  H LVP+H +L+  EK  LL+RY L
Sbjct: 133 QYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKRYRL 175

[182][TOP]
>UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23
           kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B4DJ89_HUMAN
          Length = 117

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 33/72 (45%), Positives = 47/72 (65%)
 Frame = +2

Query: 359 MKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTD 538
           M+ EN+ RA++V Q  +T  +K  + +MA K+ LE F + ELL+N+ +H LVPEH V+T 
Sbjct: 1   MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60

Query: 539 TEKKTLLERYTL 574
            E   LL RY L
Sbjct: 61  EEVTELLARYKL 72

[183][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
           RepID=Q59PF3_CANAL
          Length = 179

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 9/135 (6%)
 Frame = +2

Query: 197 MSKDEFREKYGENM---KREDLVINKA------KKNKPSDQIYVLFPEEVKVGIHVLRTY 349
           M+ +EFR K  ++M   +R+ +           +K   +  ++V F +E  VGI  +R +
Sbjct: 1   MTLEEFRSKICDSMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNF 60

Query: 350 INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQV 529
              +  +N    I + Q+S+T  S N +    S   +EIFQE +L+VN+  H LVP+H  
Sbjct: 61  CIHITEKNFSTGIFIYQNSMTP-SANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLK 119

Query: 530 LTDTEKKTLLERYTL 574
           L   EKK LL RY L
Sbjct: 120 LNREEKKELLTRYRL 134

[184][TOP]
>UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE
          Length = 126

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268
           E E+ +L+ IRKTV EM  DRGYLV   E++ + ++F E +G+        R DL +   
Sbjct: 8   EAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLT 67

Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMK 364
             + P +++ V FPEE KV +  ++ + NRM+
Sbjct: 68  HADDPKNRMLVFFPEEPKVAVRTIKAFANRMR 99

[185][TOP]
>UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia
           guilliermondii RepID=A5DHL4_PICGU
          Length = 179

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
 Frame = +2

Query: 197 MSKDEFREKYGENMKREDLVINKAKKNKPSD---------QIYVLFPEEVKVGIHVLRTY 349
           MS DEFR K  ++M      +   + N  ++          ++V F +E  VGI  +R +
Sbjct: 1   MSLDEFRSKICDSMGLPQRKMMCFQANPTAEALEKFPDMGSLWVEFCDEASVGIKTMRNF 60

Query: 350 INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQV 529
              +  +N    I + Q+S+T  S N +    +   +E FQE++L+VN+  H LVP+H  
Sbjct: 61  CIHISEKNFSTGIFIYQNSITP-SANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIK 119

Query: 530 LTDTEKKTLLERYTL 574
           L+  EKK LL RY L
Sbjct: 120 LSIGEKKELLARYRL 134

[186][TOP]
>UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
           Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL
          Length = 179

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
 Frame = +2

Query: 197 MSKDEFREKYGENM---KREDLVINKAKKNKPSDQ------IYVLFPEEVKVGIHVLRTY 349
           M+ +EFR K  ++M   +R+ +        +  D+      ++V F +E  VGI  +R +
Sbjct: 1   MTLEEFRAKVCDSMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNF 60

Query: 350 INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQV 529
              +  +N    I + Q+S+T  S N +        +E FQE +L+VN+  H LVP+H  
Sbjct: 61  CIHISEKNFQVGIFIYQNSITP-SANKLIPTVQPASIETFQETDLIVNITHHELVPKHIK 119

Query: 530 LTDTEKKTLLERYTL 574
           L   EKK LLERY L
Sbjct: 120 LNREEKKELLERYRL 134

[187][TOP]
>UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1
           Tax=Trypanosoma brucei RepID=Q388R5_9TRYP
          Length = 219

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQI- 295
           R++R+ +TV EM+RDR Y V    +  +  +F E+Y   + RE   I + +   P +++ 
Sbjct: 17  RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGRRIYRERMTVPCERVG 73

Query: 296 -------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNF---IFEMA 445
                   V F  E+  G+  ++ Y       N  R I+V    +    K +   I    
Sbjct: 74  GTHRSRAMVFFASEL--GMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYVDCINRSG 131

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +   +++F E +L+VN+  H LVP+H  L D E K +LE ++L
Sbjct: 132 TGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSL 174

[188][TOP]
>UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2
           Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG
          Length = 219

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQI- 295
           R++R+ +TV EM+RDR Y V    +  +  +F E+Y   + RE   I + +   P +++ 
Sbjct: 17  RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGKRIYRERMTVPCERVG 73

Query: 296 -------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNF---IFEMA 445
                   V F  E+  G+  ++ Y       N  R I+V    +    K +   I    
Sbjct: 74  GTHRSRAMVFFASEL--GMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYVDCINRSG 131

Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           +   +++F E +L+VN+  H LVP+H  L D E K +LE ++L
Sbjct: 132 TGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSL 174

[189][TOP]
>UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus
           RepID=Q6MY78_ASPFU
          Length = 220

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
 Frame = +2

Query: 101 SENEMTRLYRIRKTVMEMLRDRG------YLVGDFEVNMSKDEFREKYGENMKREDLVIN 262
           ++ EMTRL+R  +TV EML DR       + +  +     K   R       K   L   
Sbjct: 11  ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPYSRTKMKISARPTAAMQAKYTPLPTP 70

Query: 263 KAKKNKPS-DQIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436
                +P    IYV F  +   VG   +R + + +   N +  + + Q+ ++  +   + 
Sbjct: 71  ANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLS 130

Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
            +  +   E FQE +LLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 131 GIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 175

[190][TOP]
>UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium
           yoelii yoelii RepID=Q7RKX0_PLAYO
          Length = 112

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 33/73 (45%), Positives = 49/73 (67%)
 Frame = +2

Query: 356 RMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLT 535
           +M  +++ RAILV Q++LT  +K+ I E A +  +E F + ELLVN+  H LVP+H  LT
Sbjct: 9   KMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLT 68

Query: 536 DTEKKTLLERYTL 574
             EK+ LL+RY +
Sbjct: 69  SDEKRNLLQRYKI 81

[191][TOP]
>UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi
           RepID=Q4XTK3_PLACH
          Length = 126

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 33/73 (45%), Positives = 49/73 (67%)
 Frame = +2

Query: 356 RMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLT 535
           +M  +++ RAILV Q++LT  +K+ I E A +  +E F + ELLVN+  H LVP+H  LT
Sbjct: 9   KMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLT 68

Query: 536 DTEKKTLLERYTL 574
             EK+ LL+RY +
Sbjct: 69  SDEKRNLLQRYKI 81

[192][TOP]
>UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi
           RepID=Q8T1Q5_TRYCR
          Length = 219

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
 Frame = +2

Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIY 298
           +++R+ +TV EM+ DR Y V D  +  S +EF++ Y +   RE  VI + +   P ++I 
Sbjct: 17  KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREG-VIYRDRMTVPCERIG 73

Query: 299 VLFPEEVKV------GIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK--- 451
           V       V       +  ++ Y  +    N  R I+V Q  +    K  + ++      
Sbjct: 74  VSQRSRAMVFFSEGLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLG 133

Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +++F E +L+VN+  H LVP+H  L D E K +L+ + L
Sbjct: 134 LKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHAL 174

[193][TOP]
>UniRef100_Q8CI23 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Mus
           musculus RepID=Q8CI23_MOUSE
          Length = 96

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE-----NMKREDLVINKA 268
           E E  RL++IRKT+M++  DRGYLV   E++ + +EF+ ++G+       +R DL +  A
Sbjct: 4   EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63

Query: 269 KKNKPSDQIYVLFPEE 316
             + P+DQ++V FP E
Sbjct: 64  HNDDPTDQMFVFFPGE 79

[194][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
           RepID=Q3LW39_BIGNA
          Length = 204

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
 Frame = +2

Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK--REDLVINKAKKNKPS 286
           + + Y ++    EML  RGY V    +N++  +F++K  E  +  +   +IN    N  +
Sbjct: 6   LEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHL--NDTN 63

Query: 287 DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466
           ++I   +  +  + ++ L   I + K+ N    I + +  L+ Q+   +      F++EI
Sbjct: 64  NKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIEI 123

Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           F E E+L+N   H LVP+H +L    K+ +L+ Y +
Sbjct: 124 FFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNV 159

[195][TOP]
>UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide E, partial n=1 Tax=Hydra magnipapillata
           RepID=UPI0001925DCF
          Length = 187

 Score = 61.2 bits (147), Expect = 5e-08
 Identities = 44/131 (33%), Positives = 61/131 (46%)
 Frame = +2

Query: 182 DFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRM 361
           D E N++KD    ++  + K  D +I      K   Q++V FPEE KVGI  ++ Y  RM
Sbjct: 24  DIEWNIAKDI---EWNIDKKNHDKLIKLFDSTKY--QMFVFFPEEEKVGIKTIKQYCTRM 78

Query: 362 KSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDT 541
           + E + RAI+V Q+ +T  +K                            LVPEH VL+  
Sbjct: 79  QEEGINRAIIVVQTGMTPSAKQ---------------------------LVPEHVVLSPE 111

Query: 542 EKKTLLERYTL 574
           EK  LL RY L
Sbjct: 112 EKAELLTRYKL 122

[196][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B0H1_VITVI
          Length = 162

 Score = 60.5 bits (145), Expect = 9e-08
 Identities = 32/94 (34%), Positives = 55/94 (58%)
 Frame = +2

Query: 293 IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQ 472
           I V+F    ++   V+R    ++  E ++R ILV QS + + ++  + E   K  +E FQ
Sbjct: 26  ILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFFQ 83

Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             ELL+N+  HV VP+H++L+  EK+ L+ +Y L
Sbjct: 84  ITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 117

[197][TOP]
>UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE
          Length = 224

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
 Frame = +2

Query: 125 YRIRKTVMEMLRDRGYLVGDFEVN---MSKDE----FREKYGENMKREDLVINKAKKNKP 283
           Y++ +T+  M+R RGY    FE N   + +DE    F  KY  ++  + +V  K K+++ 
Sbjct: 18  YKVFQTLASMIRQRGY----FEANPPILIEDEPFELFEAKYRTDVLPQRVVCFK-KEDET 72

Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSS--------LTTQSKNFIFE 439
              +   + ++  +     + YI+ + +  V R I+V  +         +  +++ FI +
Sbjct: 73  DKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQVVEKKARFFIDQ 132

Query: 440 MAS--KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568
           + S   +  E+F E +L+ +V  H LVP+H +L D EK+ LL++Y
Sbjct: 133 VNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKY 177

[198][TOP]
>UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
           brasiliensis Pb03 RepID=C0S407_PARBP
          Length = 171

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
 Frame = +2

Query: 293 IYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           IYV F  +++ VG   +R + + +  +N +  I + Q+ ++  +   +  +  +F  E F
Sbjct: 33  IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRF-CEHF 91

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           QE ELLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 92  QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 126

[199][TOP]
>UniRef100_Q7RKX1 Putative uncharacterized protein PY02778 n=1 Tax=Plasmodium yoelii
           yoelii RepID=Q7RKX1_PLAYO
          Length = 91

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280
           E+ +TR Y+ RKT  EML DRGY++   E   +   F+E + EN K R  + I  + KN 
Sbjct: 2   EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61

Query: 281 PSDQIYVLFPEEV-KVGIHVLRTYINRMK 364
            +++I V F +EV K G+  LR Y  ++K
Sbjct: 62  ANNKIIVYFVDEVKKTGVKPLREYNKKIK 90

[200][TOP]
>UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
           RepID=Q8SRJ3_ENCCU
          Length = 212

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 1/156 (0%)
 Frame = +2

Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-KREDLVINKAKKNKPS 286
           E+  L   R T +EM+RDRGY     EV ++ D F E+Y   + KR  L       ++P 
Sbjct: 14  ELRALCLSRNTAIEMVRDRGYTTTQ-EV-LALDGFHERYPLALTKRSTLNFVCVNVDRP- 70

Query: 287 DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466
             + V F ++ K+G       +++ + +N++  IL+    L + +   +  +  +F +EI
Sbjct: 71  --VAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQ-LPSPTVMSMIPLTPRFSIEI 127

Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           F   EL+ N   H  VP H+VL+  E++++     L
Sbjct: 128 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKL 163

[201][TOP]
>UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE
          Length = 223

 Score = 57.0 bits (136), Expect = 1e-06
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
 Frame = +2

Query: 125 YRIRKTVMEMLRDRGYLVGDFEVNMSKDE----FREKYGENMKREDLVINKAKKNKPSDQ 292
           Y+I +T+  M+R RGY        + +DE    F  KY +N+  + +     K++  SD+
Sbjct: 18  YKIFQTLASMIRQRGYFEST-PAKLVEDETFEIFESKYRDNLPEKIVCF---KRDDESDK 73

Query: 293 IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSS--------LTTQSKNFIFEMA 445
           + ++F  ++  +     +  I    +  V R I++  +         +  +++ FI ++ 
Sbjct: 74  LLIIFYTKQAPLTHEEAKKTIQDFSNRQVKRLIMIFPTDPFATKPQVVDKKARLFIDQVN 133

Query: 446 S--KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           S   +  E+F E +L+ +V  H LVP+H +L D EK+ LL++Y L
Sbjct: 134 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGL 178

[202][TOP]
>UniRef100_UPI0001B7AB22 UPI0001B7AB22 related cluster n=1 Tax=Rattus norvegicus
           RepID=UPI0001B7AB22
          Length = 79

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
 Frame = +2

Query: 104 ENEMTRLYRIRKTVME--MLRDRGYLVGDFEVNMSKDEFREKYGE-----NMKREDLVIN 262
           E E  RL++IRKT+M+  +  DRGYLV   E++ + +EF+ ++G+       +R DL + 
Sbjct: 4   EEETYRLWKIRKTIMQATLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63

Query: 263 KAKKNKPSDQIYVLFP 310
            A  + P+DQ++V FP
Sbjct: 64  VAHNDDPTDQMFVFFP 79

[203][TOP]
>UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
           RepID=B6QBA8_PENMQ
          Length = 172

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
 Frame = +2

Query: 272 KNKPSD--------QIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSK 424
           K +P+D        QI+V F E+   VG   +R + + +   N +  I + +++++  + 
Sbjct: 19  KKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAV 78

Query: 425 NFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
             +   A     E FQE++LLVN+  H LVP+H +L+  EK  LLERY L
Sbjct: 79  RLL-NSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRL 127

[204][TOP]
>UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus
           RepID=B0XMP1_ASPFC
          Length = 171

 Score = 53.9 bits (128), Expect = 9e-06
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +2

Query: 293 IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469
           IYV F  +   VG   +R + + +   N +  + + Q+ ++  +   +  +  +   E F
Sbjct: 33  IYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRI-CEHF 91

Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574
           QE +LLVN+  H LVP+H +L+  EKK LL+RY L
Sbjct: 92  QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 126