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[1][TOP] >UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SVA4_SOYBN Length = 206 Score = 242 bits (618), Expect = 1e-62 Identities = 118/161 (73%), Positives = 139/161 (86%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 MV SE EM RLYRIRKTVM+MLRDRG+LVGDFE+NMSK EF+ KYGE+MKREDLVINK+K Sbjct: 1 MVLSEEEMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60 Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 K+ DQIYV FP+E KVG+ ++TY NRM SENVYRAILV Q++LT ++ I E++SK Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 FHLE+FQEAELLVN+K+H LVPEHQVLTD EKKTLLERYT+ Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTV 161 [2][TOP] >UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXZ4_SOYBN Length = 206 Score = 238 bits (608), Expect = 2e-61 Identities = 116/161 (72%), Positives = 138/161 (85%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 MV SE E+ RLYRIRKTVM+MLRDR +LVGDFE+NMSK EF+ KYGE+MKREDLVINK+K Sbjct: 1 MVLSEEEIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSK 60 Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 K+ DQIYV FP+E KVG+ ++TY NRM SENVYRAILV Q++LT ++ I E++SK Sbjct: 61 KDNSGDQIYVFFPDEPKVGVKTMKTYTNRMNSENVYRAILVTQTNLTPFARTCISEISSK 120 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 FHLE+FQEAELLVN+K+H LVPEHQVLTD EKKTLLERYT+ Sbjct: 121 FHLEVFQEAELLVNIKEHELVPEHQVLTDAEKKTLLERYTV 161 [3][TOP] >UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PEL2_VITVI Length = 206 Score = 232 bits (592), Expect = 1e-59 Identities = 113/161 (70%), Positives = 137/161 (85%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 M SE E++RL+RIRKTVM+ML+DRGY VGDFE+NM+K +F K+GENMKREDLVINKAK Sbjct: 1 MSASEEEISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAK 60 Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 + SDQIYV FPEE KVG+ ++TY NRMKSENV+RAILV Q +LT ++ I E+++K Sbjct: 61 RTDSSDQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 FHLE+FQEAELLVN+K+HVLVPEHQVLT EKKTLLERYT+ Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLTSEEKKTLLERYTV 161 [4][TOP] >UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR Length = 206 Score = 229 bits (584), Expect = 1e-58 Identities = 109/161 (67%), Positives = 135/161 (83%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 M +E E+ RL RIRKTVM+ML+DRGY VGDFE+ M++++F KYG NMKREDLVINK K Sbjct: 1 MTLTEEEIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTK 60 Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 +N SDQIYV FPEE KVG+ ++TY NRMKSENV+RAILV Q +LT ++ I E+++K Sbjct: 61 RNDSSDQIYVFFPEEAKVGVKTMKTYTNRMKSENVFRAILVVQQNLTPFARTCINEISTK 120 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 FHLE+FQEAELLVN+K+HVLVPEHQVL++ EKKTLLERYT+ Sbjct: 121 FHLEVFQEAELLVNIKEHVLVPEHQVLSNEEKKTLLERYTV 161 [5][TOP] >UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis thaliana RepID=O81098_ARATH Length = 205 Score = 214 bits (544), Expect = 5e-54 Identities = 101/160 (63%), Positives = 131/160 (81%) Frame = +2 Query: 95 VFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKK 274 + +E E+ RLYRI+KT+M+MLRDRGY + D E+ M+K +F K+G+NMKREDLV KAK+ Sbjct: 1 MLTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKR 60 Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454 N SDQ+Y+ FP+E KVG+ ++ Y NRMKSENV+RAILV Q +LT ++ I E++SKF Sbjct: 61 NDNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKF 120 Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 HLE+FQEAE+LVN+K+HVLVPEHQVLT EKKTLLERYT+ Sbjct: 121 HLEVFQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTV 160 [6][TOP] >UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=A9NTD1_PICSI Length = 191 Score = 211 bits (538), Expect = 2e-53 Identities = 98/157 (62%), Positives = 130/157 (82%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 + + +L+RIR+TV++ML DR YLVGDFE+N +K++F +K+GE+ K+EDLVINKAK+N P Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 S+QI+V FPEE KVG+ ++TY+ RMKSE V+RAILV Q +LT ++ + E + KFHLE Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQALTPFARQSVQEFSGKFHLE 123 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +FQEAELLVN+K+HVLVPE Q+LT EKKTLLERYTL Sbjct: 124 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTL 160 [7][TOP] >UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis guineensis RepID=B3TLL2_ELAGV Length = 204 Score = 211 bits (537), Expect = 3e-53 Identities = 101/158 (63%), Positives = 131/158 (82%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 SE++++RL+RIR+TVM+MLRDRGYLV D E+NM+K +F EK+GE +KREDLVINKAKKN Sbjct: 2 SEDDISRLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKND 61 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460 P+DQIYV FP + KVG+ ++ Y+ RMK+ENV R ILV Q +LT ++ + E++ K+ L Sbjct: 62 PADQIYVFFPNDAKVGVKQIKQYVERMKAENVTRGILVVQQALTPFARQSLAEVSQKYML 121 Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E+FQ+ ELLVN+K+HVLVPEHQVLT EKKTLLERYTL Sbjct: 122 EVFQDTELLVNIKEHVLVPEHQVLTSEEKKTLLERYTL 159 [8][TOP] >UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RKM1_RICCO Length = 225 Score = 210 bits (534), Expect = 7e-53 Identities = 108/180 (60%), Positives = 136/180 (75%), Gaps = 19/180 (10%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 M SE+E+ RL+RIR+TVM+ML+DR YLV D E+N++K +F KYG+NMKREDLVI+K+K Sbjct: 1 MTLSEDEIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSK 60 Query: 272 KNK-------------------PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILV 394 ++ P QIYV FPEE KVG+ ++TY NRMKSENV+RAILV Sbjct: 61 RDGSDSFYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRAILV 120 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q SLT ++ I E+ASKFHLE+FQE+ELLVN+K+HVLVPEHQVLT+ EKKTLLERYT+ Sbjct: 121 VQQSLTPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKKTLLERYTV 180 [9][TOP] >UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RWG5_PHYPA Length = 208 Score = 209 bits (532), Expect = 1e-52 Identities = 98/157 (62%), Positives = 130/157 (82%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 + + RLYRIRKTVMEMLRDR Y+V D+E+ +SK++FREKYG+ KREDLVI K +++ Sbjct: 7 DEQSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNN 66 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 ++ I+V FPEE KVG+ ++TY++RMK+ENV+RAILV Q +LT ++ + EMASK+HLE Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMASKYHLE 126 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +FQEAELLVN+K+HVLVP H+VLT EKKTLLERYT+ Sbjct: 127 VFQEAELLVNIKEHVLVPLHEVLTPDEKKTLLERYTV 163 [10][TOP] >UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RKG6_PHYPA Length = 208 Score = 206 bits (523), Expect = 1e-51 Identities = 96/157 (61%), Positives = 129/157 (82%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 + + RLYRIRKTVMEMLRDR Y+V +FE+N +K+EFREKYG+ KREDLVI K K++ Sbjct: 7 DEQCARLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNN 66 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 ++ I+V FPEE KVG+ ++TY++RMK+ENV+RAILV Q +LT ++ + EM+SK+H+E Sbjct: 67 AEHIFVFFPEEAKVGVKTIKTYVDRMKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVE 126 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +FQEAELLVN+KDHVLVP+H+VL EK TLL+RYT+ Sbjct: 127 VFQEAELLVNIKDHVLVPQHEVLNAEEKITLLQRYTV 163 [11][TOP] >UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays RepID=B4FU06_MAIZE Length = 210 Score = 201 bits (511), Expect = 3e-50 Identities = 100/163 (61%), Positives = 126/163 (77%) Frame = +2 Query: 86 ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265 A +V E + RLYRIR+TVM+MLRDRGYLV D E+ S+ +F K+GE+ REDL+INK Sbjct: 3 AGLVTDEATVGRLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINK 62 Query: 266 AKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 KKN PSDQIYV FP + KVG+ ++ Y+ M ENV RA+LV Q +LT +K+F+ E+ Sbjct: 63 YKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELE 122 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K HLEIFQEAE+L+N+K+HVLVPEHQVLT+ EKKTLLERYTL Sbjct: 123 PKIHLEIFQEAEMLINIKEHVLVPEHQVLTNEEKKTLLERYTL 165 [12][TOP] >UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LR68_PICSI Length = 194 Score = 200 bits (509), Expect = 6e-50 Identities = 96/157 (61%), Positives = 124/157 (78%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 + + +L+RIR+TV++ML DR YLVGDFE+N +K++F +K+GE+ K+EDLVINKAK+N P Sbjct: 4 DEQTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSP 63 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 S+QI+V FPEE KVG+ ++TY+ RMKSE V+RAILV Q E + KFHLE Sbjct: 64 SEQIFVFFPEEAKVGVKSIKTYVERMKSEGVFRAILVVQQ-----------EFSGKFHLE 112 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +FQEAELLVN+K+HVLVPE Q+LT EKKTLLERYTL Sbjct: 113 VFQEAELLVNIKEHVLVPEQQILTPEEKKTLLERYTL 149 [13][TOP] >UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ Length = 210 Score = 197 bits (502), Expect = 4e-49 Identities = 99/163 (60%), Positives = 126/163 (77%) Frame = +2 Query: 86 ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265 A +V E + RL RIR+TVM+MLRDRGYLV + E+ M + +F KYGE+ REDL+INK Sbjct: 3 AGLVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINK 62 Query: 266 AKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 KKN PSDQIYV FP + KVG+ ++ Y+ MK+ENV RA+LV Q +LT +++F+ E+ Sbjct: 63 YKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELE 122 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K HLEIFQEAELL+N+K+HVLVPEHQVL + EKKTLLERYTL Sbjct: 123 PKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTL 165 [14][TOP] >UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9ETS9_ORYSJ Length = 210 Score = 197 bits (501), Expect = 5e-49 Identities = 99/163 (60%), Positives = 126/163 (77%) Frame = +2 Query: 86 ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265 A +V E + RL RIR+TVM+MLRDRGYLV + E+ M + +F KYGE+ REDL+INK Sbjct: 3 AGLVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINK 62 Query: 266 AKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 KKN PSDQIYV FP + KVG+ ++ Y+ MK+ENV RA+LV Q +LT +++F+ E+ Sbjct: 63 YKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELE 122 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K HLEIFQEAELL+N+K+HVLVPEHQVL + EKKTLLERYTL Sbjct: 123 PKIHLEIFQEAELLINIKEHVLVPEHQVLNNGEKKTLLERYTL 165 [15][TOP] >UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FGM1_MAIZE Length = 206 Score = 185 bits (470), Expect = 2e-45 Identities = 86/161 (53%), Positives = 122/161 (75%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 M ++E++RL+RIR+TV EMLRDRGY V D ++ + + +F E+YG ++R++L N K Sbjct: 1 MASPDDEISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATK 60 Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 N PSDQIYV FP E K G+ +R Y+ +MK+ENV+ ILV Q +L+ +++ + E++ K Sbjct: 61 LNGPSDQIYVFFPNEAKPGVKTIRNYVEKMKNENVFAGILVVQQALSAFARSAVQEVSQK 120 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +HLE+FQEAELLVN+KDHVLVPEH +LT +KKTLLERYT+ Sbjct: 121 YHLEVFQEAELLVNIKDHVLVPEHVLLTPEDKKTLLERYTV 161 [16][TOP] >UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XUF8_ORYSJ Length = 205 Score = 182 bits (461), Expect = 2e-44 Identities = 82/158 (51%), Positives = 124/158 (78%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 SE E +RL+RIR+TVM+MLRDRGYLV + ++++ + +F ++G+ + R+ LV ++ KK+ Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460 +DQIYV FP++ K G+ +R+Y+ RMK E+V+ ILV Q +L+ +++ + E++ KFHL Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122 Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E+FQEAELLVN+KDH LVPEH++LT +KKTLLERYT+ Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTV 160 [17][TOP] >UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa Japonica Group RepID=B7EQI7_ORYSJ Length = 167 Score = 182 bits (461), Expect = 2e-44 Identities = 82/158 (51%), Positives = 124/158 (78%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 SE E +RL+RIR+TVM+MLRDRGYLV + ++++ + +F ++G+ + R+ LV ++ KK+ Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460 +DQIYV FP++ K G+ +R+Y+ RMK E+V+ ILV Q +L+ +++ + E++ KFHL Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122 Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E+FQEAELLVN+KDH LVPEH++LT +KKTLLERYT+ Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTV 160 [18][TOP] >UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A3AV22_ORYSJ Length = 217 Score = 182 bits (461), Expect = 2e-44 Identities = 82/158 (51%), Positives = 124/158 (78%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 SE E +RL+RIR+TVM+MLRDRGYLV + ++++ + +F ++G+ + R+ LV ++ KK+ Sbjct: 3 SEEETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDN 62 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460 +DQIYV FP++ K G+ +R+Y+ RMK E+V+ ILV Q +L+ +++ + E++ KFHL Sbjct: 63 GADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKFHL 122 Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E+FQEAELLVN+KDH LVPEH++LT +KKTLLERYT+ Sbjct: 123 EVFQEAELLVNIKDHTLVPEHELLTPEQKKTLLERYTV 160 [19][TOP] >UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MXV4_9CHLO Length = 206 Score = 164 bits (414), Expect = 6e-39 Identities = 82/157 (52%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S ++T+L+RI KTV +ML RGYLV E+ KD FRE YG++ KRE L + +++ Sbjct: 3 SSEKVTKLFRIHKTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDD 62 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK-FH 457 PS+ I+V FPEE KVG+ ++ Y RMK E+V+RAI+V Q+SLT +K + E AS+ F+ Sbjct: 63 PSENIFVFFPEEEKVGVKTIKEYAKRMKDESVFRAIIVVQASLTPFAKQSLLECASQSFY 122 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E FQE ELLVN+ +HVLVPEH +L+D EK+TLL RY Sbjct: 123 IEQFQEMELLVNITEHVLVPEHVLLSDAEKRTLLARY 159 [20][TOP] >UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1 Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE Length = 206 Score = 163 bits (413), Expect = 8e-39 Identities = 74/156 (47%), Positives = 115/156 (73%) Frame = +2 Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPS 286 + +TRL+R+R+T ++ML DRGYLV E+ +KD+FR+++GEN +++DL I +++ P+ Sbjct: 2 DNLTRLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPT 61 Query: 287 DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466 +QI+V FPEE KVG+ ++ RMK E V RAI+V S T +K+ + +M K+H+E Sbjct: 62 EQIFVFFPEEQKVGVKTIKLLAERMKDEKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEH 121 Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 F E+ELLVN+ +HVLVPEH++L+ EK+TLL+RY + Sbjct: 122 FLESELLVNITEHVLVPEHRILSPDEKRTLLDRYKI 157 [21][TOP] >UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona intestinalis RepID=UPI000180C3C9 Length = 210 Score = 159 bits (401), Expect = 2e-37 Identities = 81/162 (50%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E RL+RIRKTVM++ DRGYLV E++ S +EF+E++G+ R+DL I A Sbjct: 4 EAETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVG+ ++TY RM+ EN+ RAI+V Q S+T +K +F+MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGVKTIKTYCQRMQEENIQRAIIVVQQSMTPSAKQSLFDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E ELL+N+ +H LVPEH VLT EK LL RY L Sbjct: 124 KYILEQFLEQELLINITEHELVPEHVVLTPEEKSELLTRYKL 165 [22][TOP] >UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RWP8_OSTLU Length = 205 Score = 158 bits (399), Expect = 3e-37 Identities = 80/157 (50%), Positives = 109/157 (69%), Gaps = 1/157 (0%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S ++ TRL+R+RKT+ +ML RGYLV E+ D F E +GE KRE L I K++ Sbjct: 2 SNDKRTRLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDD 61 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE-MASKFH 457 PS+ I+V FP+E KVG+ ++ RMK ENV+RAI+V Q+SLT +K + E KF+ Sbjct: 62 PSENIFVFFPDEEKVGVKTIKDLAKRMKDENVFRAIIVVQASLTPFAKQSLLECQTQKFY 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E FQE ELLVN+ DHVLVPEH +L+D +K+TLL+RY Sbjct: 122 IEQFQETELLVNIIDHVLVPEHILLSDDQKRTLLDRY 158 [23][TOP] >UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1 Tax=Ostreococcus tauri RepID=Q01A87_OSTTA Length = 1124 Score = 157 bits (398), Expect = 4e-37 Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 1/157 (0%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S + RL+R+RKT+ +ML RGYLV E+ D F E++GE KR+ L I +K+ Sbjct: 921 SSDRRNRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDD 980 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE-MASKFH 457 PS+ I+V FP+E KVG+ ++ RMK ENV+RAI+V Q+SLT +K + E KF+ Sbjct: 981 PSENIFVFFPDEEKVGVKTIKDLAKRMKEENVFRAIIVVQASLTPFAKQSLLECQTQKFY 1040 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E FQE ELLVN+ DHVLVPEH +L+D +K+TLLERY Sbjct: 1041 IEQFQETELLVNIVDHVLVPEHILLSDEQKRTLLERY 1077 [24][TOP] >UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO Length = 204 Score = 154 bits (388), Expect = 6e-36 Identities = 77/152 (50%), Positives = 106/152 (69%), Gaps = 1/152 (0%) Frame = +2 Query: 116 TRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQI 295 TRL+RIRKTV +ML RGYLV E++ KD F E++GE+ +R+ L + + P+ I Sbjct: 6 TRLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPTQHI 65 Query: 296 YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE-MASKFHLEIFQ 472 +V FP+E KVG+ ++ Y RMK E V RAI+V Q SLT ++ + E A KF++E FQ Sbjct: 66 FVFFPDEEKVGVKTIKEYAKRMKDEQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQ 125 Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 EAELLVN+ DHVLVPEH +L+D +K+ LL+RY Sbjct: 126 EAELLVNITDHVLVPEHILLSDEQKRVLLDRY 157 [25][TOP] >UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5456 Length = 210 Score = 150 bits (380), Expect = 5e-35 Identities = 74/162 (45%), Positives = 111/162 (68%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKTVM++ DRGYLV E++ + ++F+E++G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP+E K+GI ++TY RM+ E ++RAI+V QS +T +K + +MA Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH VLT EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKL 165 [26][TOP] >UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E78B Length = 210 Score = 150 bits (379), Expect = 7e-35 Identities = 72/162 (44%), Positives = 112/162 (69%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKTVM++ DRGYLV E++ + ++F+E++G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP++ K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKTIKTYCQRMQEENIHRAIIVVQQGMTPSAKQSLSDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK+ LL+RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLQRYKL 165 [27][TOP] >UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN Length = 210 Score = 150 bits (378), Expect = 9e-35 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + ++F+E +G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEEKQELLSRYKL 165 [28][TOP] >UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI Length = 210 Score = 149 bits (377), Expect = 1e-34 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + ++F+E +G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHDLVPEHVVMTAEEKQELLSRYKL 165 [29][TOP] >UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME Length = 210 Score = 149 bits (377), Expect = 1e-34 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + ++F+E +G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKL 165 [30][TOP] >UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri RepID=A6N9W6_ORNPR Length = 210 Score = 149 bits (377), Expect = 1e-34 Identities = 73/162 (45%), Positives = 109/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + D+F++++G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP+E K+GI ++TY RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALTDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH VLT EK LL RY L Sbjct: 124 KYILEYFLESELLINITEHELVPEHVVLTPEEKAELLARYKL 165 [31][TOP] >UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera RepID=UPI000051A7F2 Length = 179 Score = 149 bits (376), Expect = 1e-34 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKTVM++ DRGYLV E++ + ++F+E++G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP+E K+GI ++TY RM+ E ++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH VLT EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKL 165 [32][TOP] >UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera RepID=UPI00003C0CAC Length = 210 Score = 149 bits (376), Expect = 1e-34 Identities = 73/162 (45%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKTVM++ DRGYLV E++ + ++F+E++G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP+E K+GI ++TY RM+ E ++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQLFVFFPDEPKIGIKTIKTYCQRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH VLT EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKEELLTRYKL 165 [33][TOP] >UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae RepID=B0X7A5_CULQU Length = 210 Score = 149 bits (376), Expect = 1e-34 Identities = 72/160 (45%), Positives = 111/160 (69%), Gaps = 5/160 (3%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKAKK 274 E +L+RIRKTVM++ DRGYLV E++ + ++F+E++G+ R DL++ A Sbjct: 6 ETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65 Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454 + P+DQ++V FP+E K+GI ++TY RM+ EN++RAI+V Q+ +T +K + +MA K+ Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTYCTRMQEENIHRAIVVVQAGMTPSAKQSLVDMAPKY 125 Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 LE F E+ELL+N+ +H LVPEH V+T EK+ LL RY L Sbjct: 126 ILEQFLESELLINITEHELVPEHVVMTPEEKQELLARYKL 165 [34][TOP] >UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO Length = 210 Score = 149 bits (375), Expect = 2e-34 Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + ++F+E +G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T +K+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKL 165 [35][TOP] >UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR Length = 210 Score = 149 bits (375), Expect = 2e-34 Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + ++F+E +G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T +K+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTAEDKQELLSRYKL 165 [36][TOP] >UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS Length = 210 Score = 148 bits (374), Expect = 3e-34 Identities = 72/162 (44%), Positives = 110/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ + ++F++ +G+ R DL++ A Sbjct: 4 EAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTVEEKQELLSRYKL 165 [37][TOP] >UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56A05 Length = 210 Score = 148 bits (373), Expect = 3e-34 Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKTVM++ DRGYLV E++ + ++F+E+ G+ R DL I A Sbjct: 4 EAETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP+E K+GI ++TY RM+ EN++RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHVVMTPEEKQELLTRYKL 165 [38][TOP] >UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus clemensi RepID=C1C1G9_9MAXI Length = 210 Score = 147 bits (372), Expect = 4e-34 Identities = 72/162 (44%), Positives = 111/162 (68%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E+E +L+++RKTVM + DRGYLV E++ ++D+F+ ++G+ R DL I A Sbjct: 4 ESETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPE+ K+G+ +RTY RM+ EN+ RAI+V Q+ +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEDPKIGVKHIRTYCKRMQEENITRAIIVVQAGMTPSAKQSLMDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EKK LL++Y L Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKL 165 [39][TOP] >UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI Length = 210 Score = 147 bits (370), Expect = 7e-34 Identities = 74/162 (45%), Positives = 109/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKTVM++ DRGYLV E++ + ++F+E++G+ R DL++ A Sbjct: 4 ECESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE K+GI ++TY RM+ E + RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKIGIKTIKTYCQRMQEETITRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH VLT EK+ LL RY L Sbjct: 124 KYILEQFLESELLINITEHELVPEHIVLTPDEKQELLCRYKL 165 [40][TOP] >UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum RepID=Q5DDM1_SCHJA Length = 206 Score = 144 bits (364), Expect = 4e-33 Identities = 73/161 (45%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Frame = +2 Query: 95 VFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKK 274 + ++E +L+RIRKT+++M +DRGYLV E+ S ++F+ G+ R+DL++ + Sbjct: 1 MLDDSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHE 60 Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQ-SSLTTQSKNFIFEMASK 451 P+D +YV FPEE KV + +R Y+N+M+ ++ YRAILV Q LT +K I E++ K Sbjct: 61 EDPADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCK 120 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + LE F E EL+VN+ +H LVP+H VLT EKK LLERY L Sbjct: 121 YTLECFFENELMVNITEHQLVPQHDVLTQEEKKELLERYRL 161 [41][TOP] >UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio rerio RepID=Q6DEG5_DANRE Length = 210 Score = 144 bits (363), Expect = 5e-33 Identities = 73/162 (45%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEFR ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKL 165 [42][TOP] >UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA Length = 208 Score = 144 bits (363), Expect = 5e-33 Identities = 73/158 (46%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 ++E +L+RIRKT+++M +DRGYLV E+ S ++F+ G+ R+DL++ + P Sbjct: 6 DSETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDP 65 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQ-SSLTTQSKNFIFEMASKFHL 460 +D +YV FPEE KV + +R Y+N+M+ ++ YRAILV Q LT +K I E++ K+ L Sbjct: 66 ADMLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTL 125 Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E F E EL+VN+ +H LVP+H VLT EKK LLERY L Sbjct: 126 ECFFENELMVNITEHQLVPQHNVLTQEEKKELLERYRL 163 [43][TOP] >UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI Length = 210 Score = 144 bits (363), Expect = 5e-33 Identities = 72/162 (44%), Positives = 109/162 (67%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+++RKTVM + DRGYLV E++ + D+F+ ++G+ R DL I A Sbjct: 4 EAENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP++ K+GI +RTY RM+ EN+ RAI++ QS +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPDDPKIGIKHIRTYCKRMQEENITRAIILVQSGMTPSAKQSLMDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EKK LL++Y L Sbjct: 124 KYILEQFLESELLINLTEHDLVPEHVVMTPEEKKELLKKYKL 165 [44][TOP] >UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZQF0_BRAFL Length = 210 Score = 143 bits (361), Expect = 8e-33 Identities = 71/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E +L+RIRKT+M++ DRGYLV E++ D+F++++G+ R+DLV+ A Sbjct: 4 EQETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V F +E K+GI ++ Y RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFADEPKIGIKTIKMYCQRMQEENISRAIIVVQMGMTPSAKQALVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+ELL+N+ +H LVPEH V+T EK LL RY L Sbjct: 124 KYILEQFLESELLINITEHQLVPEHVVMTPEEKAELLARYRL 165 [45][TOP] >UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Rana catesbeiana RepID=C1C3Q7_RANCA Length = 210 Score = 143 bits (360), Expect = 1e-32 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKL 165 [46][TOP] >UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BIS3_OSMMO Length = 210 Score = 143 bits (360), Expect = 1e-32 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLTRYKL 165 [47][TOP] >UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG Length = 210 Score = 142 bits (359), Expect = 1e-32 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKL 165 [48][TOP] >UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587A08 Length = 210 Score = 142 bits (358), Expect = 2e-32 Identities = 70/162 (43%), Positives = 106/162 (65%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E RL+R+R+T+M++ DRGYLV E++ + ++F+E++G+ R+DL + A Sbjct: 4 EAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVG+ ++ Y RM+ EN+ RAI+ Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEKKVGMKTIKAYCQRMQEENITRAIITVQEKMTPSAKTSLGDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F EAELL+N+ +H VPEH V+T EK LL RY L Sbjct: 124 KYILEQFLEAELLINITEHDFVPEHVVMTGEEKAELLARYKL 165 [49][TOP] >UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus RepID=Q28HF5_XENTR Length = 210 Score = 142 bits (358), Expect = 2e-32 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKDEVTELLARYKL 165 [50][TOP] >UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XGH1_CAEBR Length = 211 Score = 142 bits (358), Expect = 2e-32 Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 5/166 (3%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLV 256 M E E RL+RIRKTV++M+ DRGYLV E++ + F+E +G+ R DL Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLT 60 Query: 257 INKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 I A + P+DQ++V FPE+ K+GI ++ +M+ +N+ RAI+V Q+ +T +K I Sbjct: 61 ILVAHNDDPADQMFVFFPEDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +MA K+ LE F EAEL+VN+ +H LVPEH V+T EK LL RY L Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKL 166 [51][TOP] >UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Pongo abelii RepID=RPAB1_PONAB Length = 210 Score = 142 bits (358), Expect = 2e-32 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EFR ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [52][TOP] >UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL Length = 211 Score = 142 bits (357), Expect = 2e-32 Identities = 74/166 (44%), Positives = 106/166 (63%), Gaps = 5/166 (3%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLV 256 M E E RL+RIRKTV++M+ DRGYLV E++ + F+ +YG+ R DL Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLT 60 Query: 257 INKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 I A + P+DQ++V FPE+ K+GI ++ +M+ +N+ RAI+V Q+ +T +K I Sbjct: 61 ILVAHNDDPADQMFVFFPEDAKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +MA K+ LE F EAEL+VN+ +H LVPEH V+T EK LL RY L Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKL 166 [53][TOP] >UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E isoform 1 n=1 Tax=Canis lupus familiaris RepID=UPI00005A3E0E Length = 208 Score = 141 bits (355), Expect = 4e-32 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [54][TOP] >UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (DNA-directed RNA polymerase II subunit E) (RPB5) (DNA-directed RNA polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis lupus familiaris RepID=UPI0000EB19D6 Length = 212 Score = 141 bits (355), Expect = 4e-32 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [55][TOP] >UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3 Tax=Murinae RepID=RPAB1_MOUSE Length = 210 Score = 141 bits (355), Expect = 4e-32 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [56][TOP] >UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2 Tax=Neognathae RepID=B5FX59_TAEGU Length = 210 Score = 140 bits (354), Expect = 5e-32 Identities = 70/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [57][TOP] >UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Anoplopoma fimbria RepID=C3KI95_9PERC Length = 210 Score = 140 bits (354), Expect = 5e-32 Identities = 71/162 (43%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RAI+V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V++ E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMSKEEVVELLARYKL 165 [58][TOP] >UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Esox lucius RepID=C1BZT4_ESOLU Length = 210 Score = 140 bits (354), Expect = 5e-32 Identities = 71/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA +V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKL 165 [59][TOP] >UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri RepID=C6K8L9_CAEBE Length = 211 Score = 140 bits (354), Expect = 5e-32 Identities = 73/166 (43%), Positives = 105/166 (63%), Gaps = 5/166 (3%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLV 256 M E E RL+RIRKTV++M+ DRGYLV E++ F+E +G+ R DL Sbjct: 1 MADDELETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLT 60 Query: 257 INKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 I A + P+DQ++V FP++ K+GI ++ +M+ +N+ RAI+V Q+ +T +K I Sbjct: 61 ILVAHNDDPADQMFVFFPDDTKIGIKTIKAICQQMQEQNISRAIIVVQTGMTPSAKQSIG 120 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +MA K+ LE F EAEL+VN+ +H LVPEH V+T EK LL RY L Sbjct: 121 DMAPKYMLEHFLEAELMVNITEHELVPEHVVMTSEEKAELLARYKL 166 [60][TOP] >UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Salmo salar RepID=B5X8S7_SALSA Length = 210 Score = 140 bits (353), Expect = 7e-32 Identities = 71/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA +V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKL 165 [61][TOP] >UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E n=1 Tax=Macaca mulatta RepID=UPI0000D9E960 Length = 278 Score = 140 bits (352), Expect = 9e-32 Identities = 69/162 (42%), Positives = 105/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E + RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEDTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [62][TOP] >UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2 Tax=Euteleostei RepID=B5X957_SALSA Length = 210 Score = 139 bits (350), Expect = 2e-31 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 + E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA +V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHIVMTKEELSELLLRYKL 165 [63][TOP] >UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Homo sapiens RepID=RPAB1_HUMAN Length = 210 Score = 139 bits (350), Expect = 2e-31 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ + G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [64][TOP] >UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio RepID=UPI000056951D Length = 211 Score = 139 bits (349), Expect = 2e-31 Identities = 72/163 (44%), Positives = 107/163 (65%), Gaps = 6/163 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKTVM++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFP-EEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 + P+DQ++V FP EE+KVGI ++ Y RM+ EN+ RA++V Q+ +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPVEELKVGIKTIKMYCQRMQEENITRAVIVVQTGMTPSAKQSLVDMA 123 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 PKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKL 166 [65][TOP] >UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE Length = 210 Score = 137 bits (346), Expect = 4e-31 Identities = 71/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E+ +++RIRKTV++M DRGYLV E++ + F+E +G+ R D+ + A Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ E++YRAI+V Q+S+T ++ + EMA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F EAEL+ N+ ++ VPEH V+T EK+ LL RY L Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKL 165 [66][TOP] >UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A3E0F Length = 162 Score = 137 bits (345), Expect = 6e-31 Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 5/159 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 K+ LE F + ELL+N+ +H LVPEH V+T E LL R Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162 [67][TOP] >UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE Length = 162 Score = 137 bits (345), Expect = 6e-31 Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 5/159 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 K+ LE F + ELL+N+ +H LVPEH V+T E LL R Sbjct: 124 KYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLAR 162 [68][TOP] >UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NU15_COPC7 Length = 273 Score = 137 bits (344), Expect = 8e-31 Identities = 69/159 (43%), Positives = 102/159 (64%), Gaps = 3/159 (1%) Frame = +2 Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKAKKN 277 +E RL+++ KT+ E+++DRG+ V D E+NMS + FR+ YG NM R L + Sbjct: 70 DETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRL 129 Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 PSDQI+V F EE VG+ +R + M+ + + R I++ +++T+ ++ I MAS + Sbjct: 130 NPSDQIFVYFTEEPNVGVKAMRKLLGIMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 189 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 LE F EA+LLVN+ H LVP H+VL+ EKKTLLERY L Sbjct: 190 LEEFAEADLLVNITHHTLVPRHEVLSPEEKKTLLERYRL 228 [69][TOP] >UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Bos taurus RepID=RPAB1_BOVIN Length = 210 Score = 137 bits (344), Expect = 8e-31 Identities = 69/162 (42%), Positives = 103/162 (63%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV ++ + +EF+ ++G +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F + ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 124 KYILEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKL 165 [70][TOP] >UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5E0K0_DROPS Length = 210 Score = 136 bits (343), Expect = 1e-30 Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E+ +++RIRKTV++M DRGYLV E++ + F+E +G+ R D+ + A Sbjct: 4 EEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FP+E KVGI ++ Y RM+ E++YRAI+V Q+S+T ++ + EMA Sbjct: 64 HNDDPTDQMFVFFPQEPKVGIKDIKRYCLRMQEESIYRAIIVVQNSITPSARQALVEMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F EAEL+ N+ ++ VPEH V+T EK+ LL RY L Sbjct: 124 KYVLEQFLEAELMFNITENENVPEHVVMTPDEKQELLSRYKL 165 [71][TOP] >UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Q9_TRIAD Length = 210 Score = 135 bits (340), Expect = 2e-30 Identities = 67/162 (41%), Positives = 103/162 (63%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKK--- 274 E E +L+RIRKTVM+M DRGY+V E++ + D+F E++ M V Sbjct: 4 EEEAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVH 63 Query: 275 --NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P++Q++V FP+E KVGI+ ++ Y RM+ EN+ RAI++ QS +T +K + +MA Sbjct: 64 HIDDPTEQLFVFFPDEPKVGINTIKKYCQRMQRENINRAIIIIQSGMTPTAKQSLIDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 K+ LE F E+EL++N+ +H LVP+H V++ EK LL RY L Sbjct: 124 KYTLESFMESELMINITEHHLVPKHIVMSPEEKAELLARYKL 165 [72][TOP] >UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C1Q1_THAPS Length = 226 Score = 134 bits (336), Expect = 6e-30 Identities = 69/155 (44%), Positives = 100/155 (64%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E +RL+R+ KTV ML RGY+V M+ +F +++GE RE L I K + ++ Sbjct: 27 EASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQRFGEYPSREGLTILVEKADDETN 86 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 Q++V FPE+ KVG+ ++ +RMK ENV AILV + +T +K + EM+ F LE F Sbjct: 87 QLFVFFPEDEKVGVKPIKILTDRMKDENVSNAILVLRGDITPFAKQAVLEMSDSFRLEHF 146 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +EAELLV++ +H LVPEH VL+ EK+ LL+RY L Sbjct: 147 KEAELLVDITEHTLVPEHLVLSQNEKQELLKRYRL 181 [73][TOP] >UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE Length = 213 Score = 132 bits (333), Expect = 1e-29 Identities = 70/155 (45%), Positives = 105/155 (67%), Gaps = 5/155 (3%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE----DLVINKAKKNKPS 286 RL+R+RKT+ E+L+DRGYLV +N +K+ F +++ E +R+ DL+I +K++ PS Sbjct: 12 RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71 Query: 287 DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 DQ+ V FP+E K VG+ +RT +M+ + + RAILV Q LT +K I E + + +E Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +F E+EL+VN+ H LVPEH+ LT EK+ LLERY Sbjct: 132 VFNESELVVNITHHELVPEHKPLTAEEKRLLLERY 166 [74][TOP] >UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Pan troglodytes RepID=UPI0000E24E5A Length = 230 Score = 132 bits (331), Expect = 2e-29 Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 5/152 (3%) Frame = +2 Query: 134 RKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKAKKNKPSDQIY 298 RKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A + P+DQ++ Sbjct: 34 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMF 93 Query: 299 VLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEA 478 V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA K+ LE F + Sbjct: 94 VFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQ 153 Query: 479 ELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 ELL+N+ +H LVPEH V+T E LL RY L Sbjct: 154 ELLINITEHELVPEHVVMTKEEVTELLARYKL 185 [75][TOP] >UniRef100_A9SWJ6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SWJ6_PHYPA Length = 211 Score = 132 bits (331), Expect = 2e-29 Identities = 70/159 (44%), Positives = 103/159 (64%), Gaps = 3/159 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 + + T LY++RK V+EM+RD Y+V D E+ ++ ++F EKY E+ K+EDL+I K K + Sbjct: 7 DRQSTHLYQVRKKVLEMMRDLDYVVADNELTLTNEQFCEKYREDPKQEDLMILKPKSSNN 66 Query: 284 SDQIYVLFPE---EVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454 ++ P+ + +VG+ ++T RMK ENV RA+ V Q +T SK +I A K+ Sbjct: 67 AEH----GPKTGGKGRVGLKTIKTCKKRMKRENVPRAVFVVQQHITPLSKQYISRKAQKY 122 Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571 HLE+F E E LVN+ + LVP H++LT EK TLLERYT Sbjct: 123 HLEVFLEPEFLVNITECYLVPLHEILTPEEKNTLLERYT 161 [76][TOP] >UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE Length = 213 Score = 132 bits (331), Expect = 2e-29 Identities = 69/155 (44%), Positives = 105/155 (67%), Gaps = 5/155 (3%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE----DLVINKAKKNKPS 286 RL+R+RKT+ E+L+DRGY+V +N +K+ F +++ E +R+ DL+I +K++ PS Sbjct: 12 RLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPS 71 Query: 287 DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 DQ+ V FP+E K VG+ +RT +M+ + + RAILV Q LT +K I E + + +E Sbjct: 72 DQLIVFFPDENKRVGVKPIRTLALKMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIE 131 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +F E+EL+VN+ H LVPEH+ LT EK+ LLERY Sbjct: 132 VFNESELVVNITHHELVPEHKPLTPEEKRLLLERY 166 [77][TOP] >UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FSY0_PHATR Length = 228 Score = 127 bits (319), Expect = 6e-28 Identities = 62/155 (40%), Positives = 100/155 (64%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E RL+R+ +T+ ML RGY+V ++ F+E++GE RE+L I K + ++ Sbjct: 29 EAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTN 88 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 Q+++ FPE+ KVG+ ++ Y +RM++E+V AI++ + +T +K + EM+ F +E F Sbjct: 89 QLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEMSDSFRIEHF 148 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E+ELLV++ H LVP HQVLT EK LL+RY L Sbjct: 149 KESELLVDITKHQLVPVHQVLTPNEKNELLKRYRL 183 [78][TOP] >UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE Length = 207 Score = 124 bits (312), Expect = 4e-27 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 5/157 (3%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKAKKNKP 283 + +RIRKTVM++ G ++ D E++ + ++F+E++G+ R DL I A + P Sbjct: 9 KFWRIRKTVMQVCN--GLILRD-ELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHNDDP 65 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 +DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K + +MA K+ LE Sbjct: 66 TDQMFVFFPEEPKVGIKTIKQYCQRMQEENISRAVIVVQLGMTPSAKQALVDMAPKYILE 125 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 F EAEL++N+ +H LVPEH ++T EK+ LL RY L Sbjct: 126 QFVEAELMINITEHELVPEHVLMTPDEKQELLLRYKL 162 [79][TOP] >UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D9Y7_LACBS Length = 208 Score = 124 bits (310), Expect = 7e-27 Identities = 60/159 (37%), Positives = 96/159 (60%), Gaps = 3/159 (1%) Frame = +2 Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN---MKREDLVINKAKKN 277 +E +L+++ +T+ E+++DRG+LV D E++M FR Y N + R L + Sbjct: 5 DETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRT 64 Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 +DQI+V F EE VG+ +R + ++ +++ R I+V ++T ++ I MA ++ Sbjct: 65 NSTDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGNMTPSARKVIVAMAQQYR 124 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 LE F EA+LLVN+ H LVP H VL+ EKKTLLE+Y L Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKKTLLEKYRL 163 [80][TOP] >UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=B5DLP1_DROPS Length = 320 Score = 122 bits (307), Expect = 1e-26 Identities = 65/162 (40%), Positives = 98/162 (60%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E+ +L+ IRKT+ EM DRGYLV E++ + ++F E +G+ R DL + + Sbjct: 4 EAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTMLLS 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P +++ V FPEE KV + ++ Y +RM+ E ++RAILV + LT +K I MA Sbjct: 64 HADDPKNRMLVFFPEEPKVAVKTIKAYAHRMEGEGIHRAILVVRDCLTPPAKQSIMAMAP 123 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +E F E+EL +NV H LVP+H VL++ EKK L Y L Sbjct: 124 LYIMEQFLESELTINVTKHELVPQHVVLSEVEKKQLFRCYRL 165 [81][TOP] >UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH Length = 210 Score = 122 bits (305), Expect = 3e-26 Identities = 57/161 (35%), Positives = 108/161 (67%), Gaps = 4/161 (2%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKR---EDLVINKAKK 274 ++E+TR++++R+TV++MLRDRGY + + ++N+ ++EF +++ + M + E L ++ K Sbjct: 5 DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64 Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYIN-RMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 P+D+IYV +PE KVG+ V++ + +M+ + V+R I+V ++T ++ + E+ Sbjct: 65 PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E+F+EAEL+ N+ +H LV ++ VL D KK LL YT+ Sbjct: 125 LTIEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTV 165 [82][TOP] >UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Salmo salar RepID=B5XGU7_SALSA Length = 159 Score = 118 bits (296), Expect = 3e-25 Identities = 57/139 (41%), Positives = 90/139 (64%), Gaps = 5/139 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 + E RL++IRKT+M++ DRGYLV E++ + DEF+ ++G+ +R DL + A Sbjct: 4 DEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA +V Q +T +K + +MA Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQSLVDMAP 123 Query: 449 KFHLEIFQEAELLVNVKDH 505 K+ LE F + ELL+N+ +H Sbjct: 124 KYILEQFLQQELLINITEH 142 [83][TOP] >UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE Length = 221 Score = 117 bits (292), Expect = 8e-25 Identities = 58/172 (33%), Positives = 101/172 (58%), Gaps = 14/172 (8%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG--------------ENM 238 + E+ RL+R+ +TV EM+RDRGYL+ D+E+N+S +EF++++G ++ Sbjct: 5 ANRELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSS 64 Query: 239 KREDLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQ 418 R ++ + +N +D+I+V F + V ++T+I M R I++ ++ Sbjct: 65 SRSNMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGIIIWSEKMSPA 124 Query: 419 SKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +K + EM S++HLE F E++LLVN+ H LVP+H V+ EK L++RY L Sbjct: 125 AKKTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEKSALIKRYRL 176 [84][TOP] >UniRef100_Q54EH2 DNA-directed RNA polymerases I, II, and III subunit rpabc1 n=1 Tax=Dictyostelium discoideum RepID=RPAB1_DICDI Length = 197 Score = 116 bits (291), Expect = 1e-24 Identities = 64/157 (40%), Positives = 94/157 (59%), Gaps = 2/157 (1%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 ++ RL +IRKTV++ML DR Y++ +E ++ F + RE+L + KK+ P+D Sbjct: 3 DINRLLQIRKTVLQMLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTD 55 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI--FEMASKFHLE 463 IYV FP+ KVG+ ++ Y++ MK RAI+V Q ++T +K + F K LE Sbjct: 56 SIYVFFPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLE 115 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 F EAELLVN+ H LVP+H +LT EK LL RY + Sbjct: 116 QFNEAELLVNITHHQLVPKHILLTKEEKLELLTRYKM 152 [85][TOP] >UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO Length = 205 Score = 114 bits (286), Expect = 4e-24 Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 2/157 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN-MKREDLVINKAKKNK 280 E+ RL+R RKT +ML+DRGY+V E N S ++F +++ EN R +++ + K Sbjct: 2 EDSTRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVD 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 P +++ V F +E K G+ +R RM+ N+ RAILV Q+ LT +++ I E A + Sbjct: 62 PDNRVIVYFADETKKTGVKPIRELTERMEERNIQRAILVTQNVLTAFARDAISEAAPRHI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E F E+ELLVN+ H LVP+H LT+ EK+ LL RY Sbjct: 122 IENFMESELLVNITKHELVPKHVPLTNDEKQNLLNRY 158 [86][TOP] >UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QAC6_MALGO Length = 159 Score = 112 bits (279), Expect = 3e-23 Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 2/156 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN--MKREDLVINKAKKN 277 + E RL+R+ +T+ E++ DRGY V + E+N+ D F+ + N + R + K+ Sbjct: 4 DRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQHKD 63 Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 KP ++++V + E VG+ +R +IN ++ +N+ R I++ +T+ +K I M + Sbjct: 64 KPEERLFVFYSTERNVGVKTMRQFINILEEKNITRGIIIWSDKMTSAAKKVIEAMRLQLV 123 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 LE F+EA LLVN+ H LVP+H+VLT EKK LL R Sbjct: 124 LEDFEEAFLLVNITHHQLVPKHEVLTPDEKKELLHR 159 [87][TOP] >UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1 Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI Length = 205 Score = 111 bits (278), Expect = 3e-23 Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 2/159 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 E+ +TR Y+ RKT EML DRGY++ E + F+E++ EN K R + I + KN Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 +++I V F +E+K G+ LR +M +++ RAILV Q++LT +++ I E A + Sbjct: 62 ANNKIIVYFADEIKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E F + ELLVN+ H LVP H LT EK+ LL+RY + Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKI 160 [88][TOP] >UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8ID59_PLAF7 Length = 205 Score = 111 bits (277), Expect = 5e-23 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN-MKREDLVINKAKKNK 280 E+ +TR Y+ RKT EML DRGY++ E + F+E + +N +R + I+ KN Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMFEDNDRQRSKMGISTTHKND 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 +++I V F +EVK G+ LR RM+ +++ RAILV Q+ LT +++ I E A + Sbjct: 62 SNNRIIVYFADEVKKTGVKPLRELTERMEEKSIQRAILVTQNILTPFARDAIKEAAPRHI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E F + ELLVN+ H LVP H LT EKK LL+RY + Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKKNLLQRYKI 160 [89][TOP] >UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L6X3_PLAKH Length = 205 Score = 111 bits (277), Expect = 5e-23 Identities = 65/159 (40%), Positives = 96/159 (60%), Gaps = 2/159 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 E+ +TR Y+ RKT EML DRGY++ E + F+E++ EN K R + I + KN Sbjct: 2 EDPITRFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKND 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 S++I V F +E K G+ LR +M +++ RAILV Q++LT +++ I E A + Sbjct: 62 ESNKIIVYFADETKKTGVKPLRELTEKMDEKSIQRAILVTQNTLTPFARDAIKEAAPRHI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E F + ELLVN+ H LVP H LT EK+ LL+RY + Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKRNLLQRYKI 160 [90][TOP] >UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LUR5_ARATH Length = 178 Score = 110 bits (274), Expect = 1e-22 Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK 271 M + E+ RL+ +++T+M+ML+DRGYL+ E+ M+ +EF EKYG+NMKR L+++K + Sbjct: 1 MALMDEEIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYGDNMKRSLLLLSKLR 60 Query: 272 KNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQ--SSLTTQSKNFIFEMA 445 K + T I RAILV Q + + Q+ F+ + Sbjct: 61 K---------------------MMTMI---------RAILVVQDIKAFSRQALVFLGAVY 90 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 FH+E+FQE EL+VNVK+HV VPEHQ LT EK+ LER Sbjct: 91 PIFHIEVFQEKELIVNVKEHVFVPEHQALTTEEKQKFLER 130 [91][TOP] >UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EA74_ENTDI Length = 204 Score = 108 bits (271), Expect = 2e-22 Identities = 61/155 (39%), Positives = 95/155 (61%), Gaps = 3/155 (1%) Frame = +2 Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKKNKP 283 +T +YR KTV+EMLRDRGY+ + + N + + F+E++ GE + ++L I K+N Sbjct: 4 VTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDA 63 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 +D I V F E V + VL Y+ ++SE+V RAI+V + L++ K + E + E Sbjct: 64 TDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MMEQPREVKWE 122 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 E EL+VNV HVLVP+H +L+ EK+ LL++Y Sbjct: 123 ALLEDELIVNVTHHVLVPQHILLSPEEKQELLKKY 157 [92][TOP] >UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia theta RepID=Q98RN7_GUITH Length = 214 Score = 108 bits (270), Expect = 3e-22 Identities = 56/166 (33%), Positives = 104/166 (62%), Gaps = 9/166 (5%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDF--EVNMSKDEFREKYGEN--MKREDLVINKAK 271 + + L+++R+TV++M+RDRGY+V D ++N+S+ F E Y +N + R+ L I + + Sbjct: 4 DKNIQHLFKVRRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPR 63 Query: 272 KNKPSDQIYVLFPE----EVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFE 439 + P ++I ++F E ++ +G+ +R + R+K+E R +++ LT +K + Sbjct: 64 WDNPENRILIVFVEGEKDKMNIGVKSIRLFCERIKNEGFSRVLMILNGKLTPHAKQAVSS 123 Query: 440 MASKFHL-EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + S L E F E EL+VN+ H+LVP+H++L+ E K+LLERY++ Sbjct: 124 INSNNDLIEYFSENELIVNITHHMLVPKHEILSKNESKSLLERYSI 169 [93][TOP] >UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4LW54_ENTHI Length = 204 Score = 108 bits (270), Expect = 3e-22 Identities = 60/155 (38%), Positives = 95/155 (61%), Gaps = 3/155 (1%) Frame = +2 Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKKNKP 283 +T +YR KTV+EMLRDRGY+ + + N + + F+E++ GE + ++L I K+N Sbjct: 4 VTHIYRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDA 63 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 +D I V F E V + VL Y+ ++SE+V RAI+V + L++ K + E + E Sbjct: 64 TDGIIVFFAEGVSLKTDVLGKYLTEVESEHVKRAIIVYRGKLSSPVKQ-MMEQPREVKWE 122 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 E EL+VNV H+LVP+H +L+ EK+ LL++Y Sbjct: 123 ALLEDELIVNVTHHILVPQHILLSPEEKQELLKKY 157 [94][TOP] >UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AE06_9CRYT Length = 205 Score = 108 bits (269), Expect = 4e-22 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 +N TR +R R+T+ EML DRGY+V + + F+E++ + + R +++ + K Sbjct: 2 DNSDTRFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQD 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 + +I F +E K G+ +R + +M N+ RAIL+ Q+ LT +K I + A K + Sbjct: 62 QTKRIICYFADESKKTGVKPIRDIVEKMDEHNIQRAILISQNVLTAHAKVAILDAAPKHY 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E F E ELLVN+ H LVP+H +L+D EK LLERY Sbjct: 122 IESFLENELLVNITRHELVPKHVLLSDEEKSQLLERY 158 [95][TOP] >UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JZQ6_SCHJY Length = 211 Score = 107 bits (267), Expect = 7e-22 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKK 274 E + +++R+ KTV +++ DRGY V E+ ++ D+FR + G N+ R L AK Sbjct: 6 ERNIVKVFRVWKTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFY-AKP 64 Query: 275 NKPSDQ--IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMAS 448 SD+ IYV F +E VGI +RT+++ + N IL+ +++T + I + Sbjct: 65 PPGSDKGTIYVEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANNMTPSATKIISTVTG 124 Query: 449 KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +F +E FQE++L+VN+ H LVP+H +LT EKK LL+RY L Sbjct: 125 QFTIETFQESDLIVNITHHELVPKHVLLTPEEKKELLDRYKL 166 [96][TOP] >UniRef100_B4FEX9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FEX9_MAIZE Length = 127 Score = 107 bits (266), Expect = 9e-22 Identities = 50/79 (63%), Positives = 64/79 (81%) Frame = +2 Query: 338 LRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVP 517 ++ Y+ M ENV RA+LV Q +LT +K+F+ E+ K HLEIFQEAE+L+N+K+HVLVP Sbjct: 4 IKKYVEMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQEAEMLINIKEHVLVP 63 Query: 518 EHQVLTDTEKKTLLERYTL 574 EHQVLT+ EKKTLLERYTL Sbjct: 64 EHQVLTNEEKKTLLERYTL 82 [97][TOP] >UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P7S7_USTMA Length = 554 Score = 105 bits (263), Expect = 2e-21 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVINKAKK 274 + E RL+R+ +T+ E++RDRGY V D E+++ + F+ +Y G ++ R L Sbjct: 4 DRETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHG 63 Query: 275 NKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKF 454 + +++V + + VG+ +R +I+ M+ ++ R I++ +T+ ++ I M F Sbjct: 64 EHENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGIIIWPEKMTSAARKVIDAMRGTF 123 Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 HLE F+EA LLVN+ H LVP+H+ L EKK LL+R Sbjct: 124 HLEDFEEAFLLVNITHHHLVPKHEPLYPEEKKELLQR 160 [98][TOP] >UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=A2ZBC5_ORYSI Length = 227 Score = 103 bits (258), Expect = 7e-21 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%) Frame = +2 Query: 71 VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247 VPE A+M+ + E RL+ R+T MEMLRDRGY V + E+ + EFR + E E Sbjct: 15 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGIE 74 Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421 L + PS ++ ++F PE VK+ +R + K EN+ R +L+ QS + +++ Sbjct: 75 RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 132 Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + I E+ KF ++IFQ +LLVN+ HVL P+H+VL+ +K LL+ Y + Sbjct: 133 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 182 [99][TOP] >UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2RAP1_ORYSJ Length = 227 Score = 103 bits (257), Expect = 9e-21 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%) Frame = +2 Query: 71 VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247 VPE A+M+ + E RL+ R+T MEMLRDRGY V + E+ + EFR + E E Sbjct: 15 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74 Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421 L + PS ++ ++F PE VK+ +R + K EN+ R +L+ QS + +++ Sbjct: 75 RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 132 Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + I E+ KF ++IFQ +LLVN+ HVL P+H+VL+ +K LL+ Y + Sbjct: 133 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 182 [100][TOP] >UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein, expressed n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXY2_ORYSJ Length = 335 Score = 103 bits (257), Expect = 9e-21 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%) Frame = +2 Query: 71 VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247 VPE A+M+ + E RL+ R+T MEMLRDRGY V + E+ + EFR + E E Sbjct: 123 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 182 Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421 L + PS ++ ++F PE VK+ +R + K EN+ R +L+ QS + +++ Sbjct: 183 RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 240 Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + I E+ KF ++IFQ +LLVN+ HVL P+H+VL+ +K LL+ Y + Sbjct: 241 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 290 [101][TOP] >UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ Length = 227 Score = 103 bits (257), Expect = 9e-21 Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 3/171 (1%) Frame = +2 Query: 71 VPEGCATMVFSEN-EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247 VPE A+M+ + E RL+ R+T MEMLRDRGY V + E+ + EFR + E E Sbjct: 15 VPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIE 74 Query: 248 DLVINKAKKNKPSDQIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS 421 L + PS ++ ++F PE VK+ +R + K EN+ R +L+ QS + +++ Sbjct: 75 RLAFTTTLVSDPSKKVQLVFCPPEPVKIA--TIREIYLQTKEENLSRLVLILQSKILSRA 132 Query: 422 KNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + I E+ KF ++IFQ +LLVN+ HVL P+H+VL+ +K LL+ Y + Sbjct: 133 REAIKEI-FKFKVDIFQATDLLVNITKHVLKPKHEVLSADQKAKLLKEYNV 182 [102][TOP] >UniRef100_C5LN15 DNA-directed RNA polymerases II 24 kDa polypeptide, putative (Fragment) n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LN15_9ALVE Length = 168 Score = 103 bits (257), Expect = 9e-21 Identities = 56/131 (42%), Positives = 86/131 (65%), Gaps = 5/131 (3%) Frame = +2 Query: 191 VNMSKDEFREKYGENMKRE----DLVINKAKKNKPSDQIYVLFPEEVK-VGIHVLRTYIN 355 +N +K+ F +++ E +R+ DL+I +K++ PSDQ+ V FP+E K VG+ +RT Sbjct: 2 LNETKESFAQQWNEIQERKGGRHDLIILVSKQDDPSDQLIVFFPDENKRVGVKPIRTLAL 61 Query: 356 RMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLT 535 +M+ + + RAILV Q LT +K I E + + +E+F E+EL+VN+ H LVPEH+ LT Sbjct: 62 KMEEQRLSRAILVVQQPLTAFAKTAIQEASPQMEIEVFNESELVVNITHHELVPEHKPLT 121 Query: 536 DTEKKTLLERY 568 EK+ LLERY Sbjct: 122 AEEKRLLLERY 132 [103][TOP] >UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7APR4_BABBO Length = 205 Score = 102 bits (255), Expect = 2e-20 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG--ENMKREDLVINKAKKN 277 ++E RL+R R+T EML DRGY + + E + EF+ +Y + ++ + L++ K + Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPNQERLETFAEFKARYELYDRVRSKMLLVASLKTD 61 Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 K + + E K G+ +R +M+ +++RAILV Q+ LT +K+ I E A + Sbjct: 62 KDAKLLVYFADETKKTGVKPIRELTEKMEDHDIHRAILVTQNVLTPFAKDAILEAAPRNI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E F E ELLVN+ H LVP+H LT EK+TLL+RY Sbjct: 122 IENFLETELLVNITKHELVPKHIPLTADEKQTLLQRY 158 [104][TOP] >UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE Length = 210 Score = 102 bits (254), Expect = 2e-20 Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 E E RLY++ T+ +M DRG+ V +NM+ D + E YGE R++L K + Sbjct: 4 EAERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGE-YPRKELSFPVQKVDDD 62 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK---F 454 +D ++V FPE V + +++ +R+KS+N+ RAI+V Q + +K+ I + + + Sbjct: 63 NDGLFVFFPESPDVKVAAIKSLYDRLKSDNLRRAIIVYQRKVAPVAKSHIDILLKEDPPY 122 Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E F EAEL+ NV H LVP H++L ++EK+ LLERY Sbjct: 123 IVETFAEAELVYNVTRHHLVPHHEILKESEKQQLLERY 160 [105][TOP] >UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO Length = 210 Score = 102 bits (254), Expect = 2e-20 Identities = 58/166 (34%), Positives = 97/166 (58%), Gaps = 5/166 (3%) Frame = +2 Query: 92 MVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKREDLVIN 262 M E + R++R KT +++ DRGY V E++++ D+F+ + G N+ R L Sbjct: 1 MSAEEKNIVRVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFY 60 Query: 263 KAKKNKPSDQ--IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 AK + S++ IY+ F +E VGI +RT+++ + N IL+ +S+T + I Sbjct: 61 -AKPSNDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIA 119 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +F +E FQE++L+VN+ H LVP+H +L+ EKK LL+RY L Sbjct: 120 TVTGQFTIETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKL 165 [106][TOP] >UniRef100_UPI00004E3EE0 RNA polymerase II core subunit n=1 Tax=Dictyostelium discoideum AX4 RepID=UPI00004E3EE0 Length = 181 Score = 101 bits (252), Expect = 4e-20 Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 2/143 (1%) Frame = +2 Query: 152 MLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIYVLFPEEVKVGI 331 ML DR Y++ +E ++ F + RE+L + KK+ P+D IYV FP+ KVG+ Sbjct: 1 MLSDREYIITAYEQEYPRESF-------VSRENLTMYCVKKDDPTDSIYVFFPDTPKVGV 53 Query: 332 HVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI--FEMASKFHLEIFQEAELLVNVKDH 505 ++ Y++ MK RAI+V Q ++T +K + F K LE F EAELLVN+ H Sbjct: 54 TQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEAELLVNITHH 113 Query: 506 VLVPEHQVLTDTEKKTLLERYTL 574 LVP+H +LT EK LL RY + Sbjct: 114 QLVPKHILLTKEEKLELLTRYKM 136 [107][TOP] >UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH Length = 218 Score = 101 bits (252), Expect = 4e-20 Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S E + Y R+T MEMLRDRGY V D ++N+S +FR YGE+ + L I+ + Sbjct: 17 SSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKHRFD 76 Query: 281 PSDQIYVLFPEEVKVGIHVLRTY-INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 S +I V+F V ++ +R + + EN+ ILV QS +T Q+ + E+ S F Sbjct: 77 SSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAV-ELFS-FK 134 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E+F+ +LLVNV HVL P+HQVL D EK++LL+++++ Sbjct: 135 VELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSI 173 [108][TOP] >UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST Length = 213 Score = 101 bits (251), Expect = 5e-20 Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 + ++RL+R KTV EM+RDRGY + EV+MS DEFR K ++M R + + N Sbjct: 4 DRTVSRLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPT 63 Query: 284 SDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 ++ + +V F +E VGI +R + + +N I + Q+S+T S N + Sbjct: 64 AESLDKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQNSITP-SANKLI 122 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +E FQE +L+VN+ H LVP+H L+ EKK LL+RY L Sbjct: 123 PTVSPASIETFQEGDLVVNITHHELVPKHIKLSRDEKKELLDRYRL 168 [109][TOP] >UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7QJL2_VITVI Length = 229 Score = 100 bits (250), Expect = 6e-20 Identities = 61/158 (38%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R+T++EMLRDRGY + ++++S +FR Y + + L I+ A ++ PS Sbjct: 31 ESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDPDRLRISAALRSDPSK 90 Query: 290 QIYVLF--PEEVKV-GIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHL 460 +I V+F P+ VKV I + T I + +++ + ILV Q+ +T+Q+ + + F + Sbjct: 91 KILVIFCGPDVVKVNAIRSIATQI--VNKDSLSKLILVLQNHITSQALKAVDLFS--FQV 146 Query: 461 EIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E FQ +LLVN+ HVL P+H+VLTD EK LL++Y+L Sbjct: 147 EKFQITDLLVNITKHVLKPKHRVLTDQEKNKLLKKYSL 184 [110][TOP] >UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces lactis RepID=RPAB1_KLULA Length = 215 Score = 100 bits (250), Expect = 6e-20 Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 E ++RL+R KTV EM+RDRGY + E+++S ++F+ KY ++M + + + N Sbjct: 6 ERNISRLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPT 65 Query: 284 SDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 + I +V F +E VG+ ++ ++ + +N I + QS +T S N I Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITP-SANKIL 124 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 A+ +E F EA L+VN+ H LVP+H L++ EKK LL+RY L Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSEAEKKELLKRYRL 170 [111][TOP] >UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR Length = 248 Score = 100 bits (248), Expect = 1e-19 Identities = 57/156 (36%), Positives = 95/156 (60%), Gaps = 1/156 (0%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R+TV+EML+DRGY + E+ +S D+FR+ +G++ + L + PS Sbjct: 50 ESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSK 109 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKS-ENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466 +I V+F V ++ +R ++ + E++ IL+ Q+ +T+Q+ + ++ F +EI Sbjct: 110 RILVVFSGPGIVKVNGVRDIAGQIVNRESLTGLILIVQNQITSQALKAVNLLS--FKVEI 167 Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 FQ +LLVN HVL P+HQVLTD +KK LL++Y + Sbjct: 168 FQITDLLVNATKHVLKPKHQVLTDKQKKNLLKKYDI 203 [112][TOP] >UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA Length = 215 Score = 100 bits (248), Expect = 1e-19 Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 9/166 (5%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKP 283 E ++RL+R +TV EM+RDRGY + E+++S ++F+ KY ++M + + + N Sbjct: 6 ERGISRLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPT 65 Query: 284 SDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 + I +V F +E VG+ ++ ++ + +N I + QS +T S N I Sbjct: 66 EESIEKFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTGIFIYQSGITP-SANKIL 124 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 A+ +E F EA L+VN+ H LVP+H L+D EKK LL+RY L Sbjct: 125 PTAAPAVIETFPEASLVVNITHHELVPKHIRLSDAEKKELLKRYRL 170 [113][TOP] >UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9ST46_RICCO Length = 238 Score = 99.8 bits (247), Expect = 1e-19 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Frame = +2 Query: 107 NEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPS 286 +E R Y R+TV+EMLRDRGY V E+++S EFR +G N + L + + PS Sbjct: 39 HETHRYYLSRRTVLEMLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPS 98 Query: 287 DQIYVLFPEEVKVGIHVLRTYINR-MKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 ++ VLF + + +R + + +++ ILV Q+ +T Q+ + KF +E Sbjct: 99 KRMLVLFGGPGIIKVSTIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAV--DLFKFKVE 156 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +FQ +LLVN+ HVL P+HQVLTD EK+ LL+ Y + Sbjct: 157 MFQITDLLVNITKHVLKPKHQVLTDREKQKLLKDYCI 193 [114][TOP] >UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DNB3_LACTC Length = 215 Score = 99.8 bits (247), Expect = 1e-19 Identities = 57/167 (34%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 +E ++RL+R KTV EM+RDRGY + EV++S ++F+ KY ++M R + + N Sbjct: 5 NERNVSRLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64 Query: 281 PSD---------QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 + ++V F +E VGI ++ ++ + +N I V Q+ +T + + Sbjct: 65 VEEALEKFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTGIFVYQNGVTPSAMKLL 124 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +A +E F EA L+VN+ H LVP+H L+D EKK LL RY L Sbjct: 125 PSVAPA-TIETFHEASLVVNITHHELVPKHIKLSDEEKKELLRRYRL 170 [115][TOP] >UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva RepID=Q4N141_THEPA Length = 205 Score = 99.4 bits (246), Expect = 2e-19 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 ++E RL+R R+T EML DRGY + E + EF+ +Y + K R +++ +++ Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTA 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 +++ V F +E K G+ +R RM+ +++RAILV Q+ LT +K+ I E K Sbjct: 62 SENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E F E ELLVN+ H LVP+H LT EK+ LL++Y Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKY 158 [116][TOP] >UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP Length = 216 Score = 99.4 bits (246), Expect = 2e-19 Identities = 54/164 (32%), Positives = 102/164 (62%), Gaps = 9/164 (5%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLV--GDFEVNMSKDEFREKYGENMK--REDLVINKAKKN 277 E+ L++IR+T+++MLRDR Y+V ++ MS+ F +K+ +N + R +L IN++K Sbjct: 7 EILNLFKIRRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKWL 66 Query: 278 KPSDQIYVLFPEEVK----VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 + + +I V+F E K +G+ +R + R+K + +I+V LT+ +K I + Sbjct: 67 EENMRILVVFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSIN 126 Query: 446 S-KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +E F E+EL+VN+ +H LVP+H+++++ E + L +RY++ Sbjct: 127 SLDDKIEYFSESELIVNITEHNLVPKHEIISEEEARCLFKRYSI 170 [117][TOP] >UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR Length = 216 Score = 99.0 bits (245), Expect = 2e-19 Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 2/157 (1%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R+TV+EML+DRGY V E+++S +FR YG+N E L + K+ PS Sbjct: 18 ESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELLKFSATHKSDPSK 77 Query: 290 QIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 ++ V+F VKVG+ L T + +++ ILV Q+++T Q+ + KF +E Sbjct: 78 RMLVIFCGLGVVKVGMIRLIT-VQITDRDSLTGLILVLQNNITNQAMKAL--DLFKFKIE 134 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 IFQ +LLVN+ H+L P+HQVL++ K+ LL++Y++ Sbjct: 135 IFQITDLLVNITKHILKPKHQVLSEQAKQRLLKKYSI 171 [118][TOP] >UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium RepID=Q5CNJ4_CRYHO Length = 205 Score = 99.0 bits (245), Expect = 2e-19 Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNKPSDQI 295 R +R R+T+ EML DRGY+V + F+E++ + + R +++ + + + +I Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKRI 66 Query: 296 YVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQ 472 F +E K G+ +R + +M + RAIL+ Q+ LT +K I + A K ++E F Sbjct: 67 ICYFADESKKTGVKPIRDIVEKMDEHAIQRAILISQNVLTAHAKVAILDAAPKHYIESFL 126 Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 E ELLVN+ H LVP+H +L+D EK LL+RY + Sbjct: 127 ENELLVNITKHELVPKHILLSDDEKLQLLDRYKI 160 [119][TOP] >UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis thaliana RepID=Q9M1J2_ARATH Length = 222 Score = 98.6 bits (244), Expect = 3e-19 Identities = 58/159 (36%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S E R Y R+ ++MLRDRGY V D ++N+S +FR YGE + L I+ ++ Sbjct: 21 SSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYI-NRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 + ++ ++F V ++ +R+ + + + E + ILV Q+ +T Q+ I E+ S F Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI-ELFS-FK 138 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +EIFQ +LLVN+ H L P+HQVL D EK TLL+++++ Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSI 177 [120][TOP] >UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1 Tax=Theileria annulata RepID=Q4U8E3_THEAN Length = 205 Score = 97.8 bits (242), Expect = 5e-19 Identities = 59/157 (37%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 ++E RL+R R+T EML DRGY + E + EF+ +Y K R +++ + + Sbjct: 2 DDEEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTA 61 Query: 281 PSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 +++ V F +E K G+ +R RM+ +++RAILV Q+ LT +K+ I E K Sbjct: 62 AENKLLVYFADEKKKTGVKPIRELTERMEDHDIHRAILVTQNVLTPFAKDAIMEAYPKNI 121 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 +E F E ELLVN+ H LVP+H LT EK+ LL++Y Sbjct: 122 IENFMETELLVNITKHELVPKHIPLTMEEKQNLLQKY 158 [121][TOP] >UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum bicolor RepID=C5Y4H1_SORBI Length = 263 Score = 97.4 bits (241), Expect = 7e-19 Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E RL+ R+T +EMLRDRGY V + E+ + EFR + + + E L + + PS Sbjct: 65 ESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPELERLAFSTTLASDPSS 124 Query: 290 QIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 ++ V+F PE VK+ +R +K EN+ R IL+ Q + ++++ I E+ + ++ Sbjct: 125 KVKVVFCPPEPVKIA--AIRVVYTGVKDENLSRLILILQGRIMSKAREAIKEI-FPYKVD 181 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 FQ ELLVN+ H L P+HQVLT EK LL+ Y + Sbjct: 182 TFQITELLVNITKHALKPKHQVLTAEEKAKLLKEYNV 218 [122][TOP] >UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MBX4_CANTT Length = 214 Score = 97.4 bits (241), Expect = 7e-19 Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKAK 271 ++ ++RL+R KTV EM+RDRGY + E++M+ +EFR K ++M +R+ + Sbjct: 4 TDRSISRLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQP 63 Query: 272 KNKPSDQ------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 + ++ ++V F +E VGI +R + + +N + + Q+S+T S N + Sbjct: 64 TGETLEKFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLFIYQNSITP-SANKL 122 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +EIFQE++L+VN+ H LVP+H L+ EK LLERY L Sbjct: 123 IPTVSPSVIEIFQESDLIVNITHHELVPKHLKLSKDEKVELLERYRL 169 [123][TOP] >UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida albicans RepID=C4YG42_CANAL Length = 214 Score = 97.4 bits (241), Expect = 7e-19 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKA- 268 ++ ++RL+R KTV EM+RDRGY + E++M+ +EFR K ++M +R+ + Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63 Query: 269 -----KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 +K + ++V F +E VGI +R + + +N I + Q+S+T S N + Sbjct: 64 TAETLEKFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTGIFIYQNSMTP-SANKL 122 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +EIFQE +L+VN+ H LVP+H L EKK LL RY L Sbjct: 123 IPTVSPATIEIFQENDLIVNITHHELVPKHLKLNREEKKELLTRYRL 169 [124][TOP] >UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1 Tax=Arabidopsis thaliana RepID=Q8L947_ARATH Length = 222 Score = 97.1 bits (240), Expect = 9e-19 Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S E R Y R+ +++LRDRGY V D ++N+S +FR YGE + L I+ ++ Sbjct: 21 SSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRSD 80 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYI-NRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 + ++ ++F V ++ +R+ + + + E + ILV Q+ +T Q+ I E+ S F Sbjct: 81 STKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI-ELFS-FK 138 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +EIFQ +LLVN+ H L P+HQVL D EK TLL+++++ Sbjct: 139 VEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSI 177 [125][TOP] >UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC Length = 214 Score = 97.1 bits (240), Expect = 9e-19 Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVINKA- 268 ++ ++RL+R KTV EM+RDRGY + E++M+ +EFR K ++M +R+ + Sbjct: 4 TDRAVSRLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATP 63 Query: 269 -----KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 +K + ++V F +E VGI +R + + +N I + Q+S+T S N + Sbjct: 64 TGETLEKFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGIFIYQNSMTP-SANKL 122 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +EIFQE +L+VN+ H LVP+H L EKK LL RY L Sbjct: 123 IPTVSPATIEIFQENDLIVNITHHELVPKHLKLNHEEKKELLTRYRL 169 [126][TOP] >UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40 Length = 119 Score = 96.7 bits (239), Expect = 1e-18 Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 5/112 (4%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSK 424 + P+DQ++V FPEE KVGI ++ Y RM+ EN+ RA++V Q +T +K Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRALIVVQQGMTPSAK 115 [127][TOP] >UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1 Tax=Medicago truncatula RepID=Q2HW77_MEDTR Length = 224 Score = 96.7 bits (239), Expect = 1e-18 Identities = 59/159 (37%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S E R + RKT+M+ML DRGY V + ++ +S EFR ++GE K L ++ + ++ Sbjct: 23 SNIETIRYFECRKTLMDMLHDRGYNVSESDLTLSLSEFRSRFGEFPKPHTLGVSVSLRSN 82 Query: 281 PSDQIYVLFP---EEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK 451 PS ++ V+FP + K + V+++ I + E + R ILV QS +T+ ++ + Sbjct: 83 PSIKVQVVFPGTDDIRKSNLIVIQSQI--VDKERLSRLILVMQSKMTSYARKELEN--CP 138 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 F +EI Q +LLVNV HVL P+++VLT EK+ LL +Y Sbjct: 139 FKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQKLLNKY 177 [128][TOP] >UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA Length = 214 Score = 96.7 bits (239), Expect = 1e-18 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK--REDLVINKAKK 274 ++ ++RL+R KTV EM+RDRGY + E++MS EFR + ++M + L+ +A Sbjct: 4 TDRTISRLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANP 63 Query: 275 NKPS-------DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 S ++V F +E VGI +R + + +N I + QSS+T S N + Sbjct: 64 TAESLEKFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQSSITP-SANKL 122 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +E FQE +L+VN+ H LVP+H L EKK LLERY L Sbjct: 123 IPTVSPASIETFQEGDLVVNITHHDLVPKHIKLARDEKKELLERYRL 169 [129][TOP] >UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEH4_VANPO Length = 215 Score = 96.3 bits (238), Expect = 2e-18 Identities = 52/167 (31%), Positives = 94/167 (56%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 SE ++RL+R +TV EM+RDRGY + E+++S ++F+ KY ++M R + + N Sbjct: 5 SERSISRLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANP 64 Query: 281 PSD---------QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 + ++V F +E VG+ ++ ++ ++ +N I V Q+++T + + Sbjct: 65 TEETMEKFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTGIFVYQTNVTPSAMKLV 124 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +E F EA L+VN+ H LVP+H L++ EKK LL++Y L Sbjct: 125 PSIPPA-TIETFHEASLIVNITHHELVPKHIRLSENEKKELLKKYRL 170 [130][TOP] >UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Eremothecium gossypii RepID=RPAB1_ASHGO Length = 215 Score = 96.3 bits (238), Expect = 2e-18 Identities = 55/167 (32%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVI------- 259 +E ++RL+R +TV EM+RDRGY + EV++S ++F+ KY ++M R + Sbjct: 5 NERNVSRLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNP 64 Query: 260 --NKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 KK+ ++V F +E VGI ++ ++ + +N I + Q+ +T + + Sbjct: 65 TEETLKKSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTGIFIYQNGITPSALKLL 124 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +A +E F E L+VN+ H LVP+H L+D EKK LL+RY L Sbjct: 125 PSVAPA-TIETFNETALVVNITHHELVPKHIKLSDEEKKELLKRYRL 170 [131][TOP] >UniRef100_B7T1F2 RNA polymerase II (Fragment) n=1 Tax=Oreochromis niloticus RepID=B7T1F2_ORENI Length = 108 Score = 94.7 bits (234), Expect = 4e-18 Identities = 45/107 (42%), Positives = 71/107 (66%), Gaps = 5/107 (4%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKAKKNKP 283 RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A + P Sbjct: 1 RLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKSQFGDKPSEGRPRRTDLTVLVAHNDDP 60 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSK 424 +DQ++V FPEE KVGI ++ Y RM+ EN+ RAI+V Q +T +K Sbjct: 61 TDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAK 107 [132][TOP] >UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6TJI5_MAIZE Length = 264 Score = 94.7 bits (234), Expect = 4e-18 Identities = 56/155 (36%), Positives = 86/155 (55%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E RL+ R+T +EMLRDRGY V + E+ + EFR + + E L + + PS Sbjct: 66 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLASDPSS 125 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 ++ V+F V I +R +K EN+ R IL+ Q + + ++ I E+ +F ++ F Sbjct: 126 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 184 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q ELLVN+ HVL P+H+VLT K LL+ Y + Sbjct: 185 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 219 [133][TOP] >UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FYH9_MAIZE Length = 248 Score = 94.7 bits (234), Expect = 4e-18 Identities = 56/155 (36%), Positives = 86/155 (55%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E RL+ R+T +EMLRDRGY V + E+ + EFR + + E L + + PS Sbjct: 50 ESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPELERLAFSTTLTSDPSS 109 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 ++ V+F V I +R +K EN+ R IL+ Q + + ++ I E+ +F ++ F Sbjct: 110 KVKVVFCPPGPVKIAAIRLIYTEVKDENLSRLILILQGKIMSTTRESIKEI-FRFKVDTF 168 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q ELLVN+ HVL P+H+VLT K LL+ Y + Sbjct: 169 QITELLVNITKHVLKPKHEVLTAEGKAKLLKEYNV 203 [134][TOP] >UniRef100_B7Q5X9 RNA polymerase, 25-kDa subunit, putative n=1 Tax=Ixodes scapularis RepID=B7Q5X9_IXOSC Length = 91 Score = 94.4 bits (233), Expect = 6e-18 Identities = 45/91 (49%), Positives = 63/91 (69%) Frame = +2 Query: 293 IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQ 472 ++V FP+E K+GI ++TY RM+ EN+ RAI+V Q +T +K + +MA K+ LE F Sbjct: 1 MFVFFPDEPKIGIKTIKTYCQRMQEENITRAIIVVQQGMTPSAKQALGDMAPKYILEHFL 60 Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 E+ELL+N+ +H LVPEH VLT EK LL R Sbjct: 61 ESELLINITEHELVPEHVVLTPEEKAELLAR 91 [135][TOP] >UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) = Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QAL5_ASPNC Length = 235 Score = 94.4 bits (233), Expect = 6e-18 Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 24/187 (12%) Frame = +2 Query: 86 ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINK 265 A V ++ EMTRL+R +TV EML DRGY V + EV M EF++KY + + D NK Sbjct: 7 AGSVDADREMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDR--NK 64 Query: 266 AK------------------KNKPSDQ-----IYVLF-PEEVKVGIHVLRTYINRMKSEN 373 K K+ P+ Q IYV F P+ VG +RT+ + + N Sbjct: 65 MKISARPTEAMQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNHFVDENN 124 Query: 374 VYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKT 553 + + + Q+ ++ + + M + E FQE +LLVN+ H LVP+H +L+ EK Sbjct: 125 FHTGVFITQTPISPSAVRLLSSMPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPDEKAR 183 Query: 554 LLERYTL 574 LLERY L Sbjct: 184 LLERYRL 190 [136][TOP] >UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001985D3D Length = 1260 Score = 93.2 bits (230), Expect = 1e-17 Identities = 54/155 (34%), Positives = 85/155 (54%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R+T+ +ML DRGY V E+ S +FR +G N L I + PS Sbjct: 24 ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 83 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 +I V+F ++ V+R ++ E ++R ILV QS + + ++ + E K +E F Sbjct: 84 KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 141 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q ELL+N+ HV VP+H++L+ EK+ L+ +Y L Sbjct: 142 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 176 [137][TOP] >UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI Length = 221 Score = 93.2 bits (230), Expect = 1e-17 Identities = 54/155 (34%), Positives = 85/155 (54%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R+T+ +ML DRGY V E+ S +FR +G N L I + PS Sbjct: 24 ESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLRICLPLISSPSK 83 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 +I V+F ++ V+R ++ E ++R ILV QS + + ++ + E K +E F Sbjct: 84 KILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFF 141 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q ELL+N+ HV VP+H++L+ EK+ L+ +Y L Sbjct: 142 QITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 176 [138][TOP] >UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DR69_ZYGRC Length = 215 Score = 93.2 bits (230), Expect = 1e-17 Identities = 51/167 (30%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 +E ++RL+R KTV EM++DRGY + E+ + ++F+ KY ++M R + + N Sbjct: 5 NERNISRLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNP 64 Query: 281 PSDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 + I +V F +E VG+ ++T++ ++ +N I V Q+++T + + Sbjct: 65 TEESIAKFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTGIFVYQNNVTPSAMKLV 124 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +E F EA L+VN+ H LVP+H ++ EK+ LL+RY L Sbjct: 125 PSIPPA-TIETFHEASLVVNITHHELVPKHIRFSEDEKRELLKRYRL 170 [139][TOP] >UniRef100_A6R8U3 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R8U3_AJECN Length = 236 Score = 92.4 bits (228), Expect = 2e-17 Identities = 64/182 (35%), Positives = 97/182 (53%), Gaps = 24/182 (13%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK--- 271 ++ EMTRL+R +TV EML DRGY V + E+ +S DEFR +Y + + D NK K Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKISLDEFRTRYSDALGFPDR--NKMKISA 70 Query: 272 ---------------KNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388 +KP+ IYV F +++ VG +R + + + +N + I Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130 Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 V Q+ ++ + + + +F E FQE ELLVN+ H LVP+H +L+ EKK LL+RY Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 569 TL 574 L Sbjct: 190 RL 191 [140][TOP] >UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5 Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST Length = 215 Score = 92.4 bits (228), Expect = 2e-17 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 +E ++RL+R +TV EM++DRGY + EV + ++F+ KY ++M R + + N Sbjct: 5 NERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANP 64 Query: 281 PSDQI---------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 + I +V F +E VG+ ++T++ ++ +N I V Q+++T + + Sbjct: 65 TEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLV 124 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +E F EA L+VN+ H LVP+H L+ EK+ LL+RY L Sbjct: 125 PSIPPA-TIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRL 170 [141][TOP] >UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA Length = 223 Score = 91.7 bits (226), Expect = 4e-17 Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 1/151 (0%) Frame = +2 Query: 125 YRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIYVL 304 Y R+T MEMLRDRGY + + ++N++ EFR YG+ + L I+ + S +I V+ Sbjct: 29 YLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRISAQHCSDSSKKIAVV 88 Query: 305 FPEEVKVGIHVLRTY-INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAE 481 F V + +R + + EN+ ILV QS +T Q+ + E+ S F +E+FQ E Sbjct: 89 FCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAV-ELFS-FKVELFQLTE 146 Query: 482 LLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 LLVN+ HVL P+H VL + EK++L +++++ Sbjct: 147 LLVNITKHVLRPKHHVLNEQEKESLFKKFSI 177 [142][TOP] >UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis RepID=B9RGC5_RICCO Length = 239 Score = 91.7 bits (226), Expect = 4e-17 Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 1/155 (0%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y RKTVMEMLRDRGY V D E+ S EF ++G+N L I+ + + P Sbjct: 41 ESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKLRISASLHSHPDK 100 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKS-ENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466 ++ V+F ++ + +R + ++K+ E++ IL+ QS + ++ + + SK +EI Sbjct: 101 KMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKELGQFPSK--VEI 158 Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571 F ++LLVN+ HVL P H+VLT +K+ LL +++ Sbjct: 159 FHISDLLVNITKHVLKPRHEVLTAEQKQQLLNKFS 193 [143][TOP] >UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG Length = 214 Score = 91.3 bits (225), Expect = 5e-17 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 9/163 (5%) Frame = +2 Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-----KREDLVINKAKK- 274 ++RL+R +TV EM DRGY + E++ S +EFR K ++M K + N + Sbjct: 8 ISRLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLANPTPEA 67 Query: 275 -NKPSD--QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 K SD ++V F +E VGI +R + R++ +N I + Q+++T S N + Sbjct: 68 LEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTGIFIYQNNITP-SANKMIPTV 126 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S +E FQE++L+VN+ H LVP+H L+D EK LL+RY L Sbjct: 127 SPAIIETFQESDLVVNITHHELVPKHIRLSDGEKSQLLQRYKL 169 [144][TOP] >UniRef100_C0NL28 RNA polymerase subunit n=2 Tax=Ajellomyces capsulatus RepID=C0NL28_AJECG Length = 236 Score = 90.5 bits (223), Expect = 8e-17 Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 24/182 (13%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK--- 271 ++ EMTRL+R +TV EML DRGY V + E+ + DEFR +Y + + D NK K Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70 Query: 272 ---------------KNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388 +KP+ IYV F +++ VG +R + + + +N + I Sbjct: 71 RPSQTMMDKYTPLPTASKPNPVPECGTIYVEFCADMQSVGTKQIRAFNHFIDEQNYHTGI 130 Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 V Q+ ++ + + + +F E FQE ELLVN+ H LVP+H +L+ EKK LL+RY Sbjct: 131 FVSQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 569 TL 574 L Sbjct: 190 RL 191 [145][TOP] >UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces dermatitidis RepID=C5G7M7_AJEDR Length = 236 Score = 89.7 bits (221), Expect = 1e-16 Identities = 63/182 (34%), Positives = 94/182 (51%), Gaps = 24/182 (13%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK-KN 277 ++ EMTRL+R +TV EML DRGY V + E+ + DEFR +Y + + D NK K Sbjct: 13 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDR--NKMKISA 70 Query: 278 KPSD----------------------QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAI 388 +PS IYV F P+ VG +R + + + +N + I Sbjct: 71 RPSQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGI 130 Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 + Q+ ++ + + + +F E FQE ELLVN+ H LVP+H +L+ EKK LL+RY Sbjct: 131 FISQTPISPSAIRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHVLLSAEEKKRLLQRY 189 Query: 569 TL 574 L Sbjct: 190 RL 191 [146][TOP] >UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SXN9_SOYBN Length = 237 Score = 88.6 bits (218), Expect = 3e-16 Identities = 55/170 (32%), Positives = 96/170 (56%), Gaps = 4/170 (2%) Frame = +2 Query: 77 EGCATMVFSEN---EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRE 247 +GC + F +N E R Y R+T +EML+DRGY + E+++S +FR+ +G+ + Sbjct: 26 KGCLSK-FVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPD 84 Query: 248 DLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRA-ILVCQSSLTTQSK 424 L ++ S +I V+F V + +R ++ + + IL+ ++ +T+Q+ Sbjct: 85 RLRLSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQAL 144 Query: 425 NFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + + F +EIFQ +LLVN+ HVL P+HQVLTD +K LL++Y + Sbjct: 145 KAVNLFS--FKVEIFQITDLLVNITKHVLKPKHQVLTDKQKINLLKKYNI 192 [147][TOP] >UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1GUJ0_PARBA Length = 236 Score = 88.6 bits (218), Expect = 3e-16 Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 22/180 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDL--------- 253 ++ EMT+L+R +TV EML DRGY V + E+ + DEFR +Y + + D Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISARP 72 Query: 254 ------------VINKAKKNKPSDQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILV 394 ++K IYV F +++ VG +R + + + +N + I + Sbjct: 73 SQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFI 132 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q+ ++ + + + +F E FQE ELLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 133 SQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 191 [148][TOP] >UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Candida glabrata RepID=RPAB1_CANGA Length = 215 Score = 88.2 bits (217), Expect = 4e-16 Identities = 48/167 (28%), Positives = 92/167 (55%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 ++ ++RL+R +TV EM+RDRGY + E++++ ++F+ KY ++M R + + N Sbjct: 5 NDRSISRLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANP 64 Query: 281 PSDQ---------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 + ++V F +E VG+ ++T++ ++ + I + Q+++T + + Sbjct: 65 TEESMTKFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTGIFIYQNNITPSAMKLV 124 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +E F EA L+VN+ H LVP+H L + EK LL+RY L Sbjct: 125 PSIPPA-TIETFHEAALVVNITHHDLVPKHIRLNEEEKAELLKRYRL 170 [149][TOP] >UniRef100_C5PAC2 DNA-directed RNA polymerase subunit, putative n=2 Tax=Coccidioides RepID=C5PAC2_COCP7 Length = 236 Score = 87.8 bits (216), Expect = 5e-16 Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 22/180 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE------------NMKR 244 ++ EMTRL+R +TV EML DRGY V + EVN+ EFR KY + + + Sbjct: 13 ADREMTRLWRTWRTVFEMLLDRGYEVTEEEVNVPLAEFRTKYSDALGFPDRNKMRISARP 72 Query: 245 EDLVINK----AKKNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILV 394 +I K A KP+ IYV F + + VG +R + + + +N + I + Sbjct: 73 SQTMIEKYTPLASPAKPNPVPECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTGIFI 132 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 QS ++ + + + +F E F E ELLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 133 TQSPISPSAIRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHVLLSAEEKKRLLQRYRL 191 [150][TOP] >UniRef100_C4JYC4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JYC4_UNCRE Length = 239 Score = 87.8 bits (216), Expect = 5e-16 Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 25/183 (13%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-------------- 238 + EMTRL+R KTV EML DRGY V + EV +S ++FR KY + + Sbjct: 13 ANREMTRLWRTWKTVFEMLLDRGYEVTEEEVKISLNDFRSKYADTLGFPDAPSRNKMRIS 72 Query: 239 -KREDLVINK-------AKKNKPSD--QIYVLFPEEVK-VGIHVLRTYINRMKSENVYRA 385 + +I K AK N ++ IYV F + + VG +R + + + +N + Sbjct: 73 ARPSQAMIEKYTPLPSPAKPNPVAECGTIYVEFCADAQGVGTKQVRAFNHFVDEQNYHTG 132 Query: 386 ILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 I + QS ++ + + + +F E F E ELLVN+ H LVP+H +L+ EKK LL R Sbjct: 133 IFITQSPISPSAVRLLTGIPGRF-CEHFLEQELLVNITHHELVPKHLLLSAEEKKRLLHR 191 Query: 566 YTL 574 Y L Sbjct: 192 YRL 194 [151][TOP] >UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6HAG0_PENCW Length = 234 Score = 87.8 bits (216), Expect = 5e-16 Identities = 62/180 (34%), Positives = 92/180 (51%), Gaps = 22/180 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG----------------- 229 +E EMTRL+R +TV E+L DRGY V D E+ + ++FR KY Sbjct: 11 AEREMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARP 70 Query: 230 -ENMKREDLVI-NKAKKNKPSD--QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394 E MK + + +KA N D IYV F P+ VG +R + + + N + I + Sbjct: 71 TETMKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFI 130 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q+ ++ + + + + E FQE +LLVN+ H LVP+H +L+ EK LLERY L Sbjct: 131 TQTPISPSAVRLLSGVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKAKLLERYRL 189 [152][TOP] >UniRef100_A6SPK6 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6SPK6_BOTFB Length = 242 Score = 87.4 bits (215), Expect = 7e-16 Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 24/181 (13%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKRED----------- 250 + E +L+R +TV EM++DRGYL+ + EVNMS D F+ K+ N D Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKSKFTSNDGSVDRRQMNFSATPS 75 Query: 251 -------LVINKAKKNKPSDQ------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAIL 391 V A+ P+ I L +V +GI +RT+ + N IL Sbjct: 76 EAMIARYAVAPTAENPNPTTSEIGTIWIEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135 Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571 + + + ++ I +AS+ +E F E +LLVN+ H LVP+H +L+ E+ LL RY Sbjct: 136 IAPVAPSGPAQKIIPAVASETRIETFVEQDLLVNITHHELVPKHVLLSREERAKLLSRYR 195 Query: 572 L 574 L Sbjct: 196 L 196 [153][TOP] >UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Yarrowia lipolytica RepID=RPAB1_YARLI Length = 212 Score = 87.4 bits (215), Expect = 7e-16 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 9/167 (5%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY----GENMKREDLVI--- 259 S ++ +L+++ +T E+++DRGY + D EVN+S D+F + G+ +K++ + Sbjct: 2 SSDDAQKLWKVYRTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASP 61 Query: 260 --NKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFI 433 +K I+V F EE V + +R + + ILV ++++T + I Sbjct: 62 SPEAIEKFPEMGNIWVEFCEEASVTVKTMRNFCIHISENKFATGILVYENNMTPSANRLI 121 Query: 434 FEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +A ++ FQE +LLVN+ HVLVP H L+ EKK LLERY L Sbjct: 122 PSVAPAT-IDTFQETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRL 167 [154][TOP] >UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1FYH2_PARBD Length = 236 Score = 87.0 bits (214), Expect = 9e-16 Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 24/182 (13%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 ++ EMT+L+R +TV EML DRGY V + E+ + +EFR +Y + + D NK K + Sbjct: 13 ADREMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDR--NKMKISA 70 Query: 281 PSDQ-----------------------IYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388 Q IYV F +++ VG +R + + + +N + I Sbjct: 71 RPSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGI 130 Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 + Q+ ++ + + + +F E FQE ELLVN+ H LVP+H +L+ EKK LL+RY Sbjct: 131 FISQTPISPSAMRVLNSIPGRF-CEHFQEQELLVNITHHELVPKHILLSAEEKKRLLQRY 189 Query: 569 TL 574 L Sbjct: 190 RL 191 [155][TOP] >UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR Length = 233 Score = 86.3 bits (212), Expect = 2e-15 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R+TV+EML+DRGY V D E+N S EFR +G + + L + + ++ P Sbjct: 35 ESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSLRFSVSLRSIPHK 94 Query: 290 QIYVLF--PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLE 463 + V+F +E+K ++ Y + E+++ IL+ QS + +K + + F +E Sbjct: 95 KTLVMFLGTDEIKTA-NIRTVYGQILNKESLHGLILILQSKMNHFAKKELEKF--PFKVE 151 Query: 464 IFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +FQ +LLVN+ HVL P+ +LT +K+ ++ +Y L Sbjct: 152 VFQITDLLVNITKHVLQPQMDILTAEQKQQVMNKYKL 188 [156][TOP] >UniRef100_A7ECH0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7ECH0_SCLS1 Length = 242 Score = 86.3 bits (212), Expect = 2e-15 Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 24/181 (13%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGEN-------------MKR 244 + E +L+R +TV EM++DRGYL+ + EVNMS D F+ K+ N Sbjct: 16 DREAAKLWRCYRTVHEMVQDRGYLLAEEEVNMSFDTFKAKFTSNDGSVDRRQMNFSATPS 75 Query: 245 EDLVINKAKKNKPSDQ-----------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAIL 391 E ++ A P + + L +V +GI +RT+ + N IL Sbjct: 76 EAMIAKYANAPTPQNPNPTTSEIGTIWVEFLMVTDVSIGIKQMRTFAQHLSQHNFSAGIL 135 Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571 + + ++ I +AS +E F E +LLVN+ H LVP+H +L+ E+ LL RY Sbjct: 136 IAPVPPSGPAQKIIPAVASDTRIETFVEQDLLVNITHHELVPKHVLLSKEERAKLLSRYR 195 Query: 572 L 574 L Sbjct: 196 L 196 [157][TOP] >UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D205_NEOFI Length = 234 Score = 85.9 bits (211), Expect = 2e-15 Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 22/180 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN- 277 ++ EMTRL+R +TV EML DRGY V + E+ + DEFR+KY + + D K Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARP 70 Query: 278 ---------------KPSDQ-----IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394 P Q IYV F + VG +R + + + N + + + Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFI 130 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q+ ++ + + + + E FQE +LLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189 [158][TOP] >UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2VUN9_PYRTR Length = 235 Score = 85.5 bits (210), Expect = 3e-15 Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 30/184 (16%) Frame = +2 Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN---KP 283 + RL+R+ KT EM+ DRGY+V + ++NMS D+F KY RED ++++ N +P Sbjct: 11 LMRLWRVWKTTKEMMNDRGYMVLEEDMNMSLDQFARKYA----REDGEPDRSRLNFSCQP 66 Query: 284 SDQ----------------------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVC 397 S++ I+V F + VG+ LR Y+ + + + + I++ Sbjct: 67 SEEMLAKYTDAPTKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMIT 126 Query: 398 QSSLTTQSKNFIFEMAS-----KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLE 562 +T + + S K +E+F E +LLVN+ H LVP+H +L+D EK+ LL+ Sbjct: 127 VKPMTGMAIRLLRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQQLLQ 186 Query: 563 RYTL 574 RY L Sbjct: 187 RYRL 190 [159][TOP] >UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2 Tax=Emericella nidulans RepID=C8VQY1_EMENI Length = 235 Score = 84.7 bits (208), Expect = 5e-15 Identities = 62/180 (34%), Positives = 97/180 (53%), Gaps = 22/180 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY-GEN--MKREDLVI---- 259 +E E R++R +TV EML+DRGY V + EV + DEF+ KY GE RE L I Sbjct: 12 AERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQARP 71 Query: 260 NKAKKNK------PSDQ--------IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394 +A K K PS++ IY+ F P++ +G +RT+ + + N + I + Sbjct: 72 TEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTGIFI 131 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 ++ ++ + + + + E FQE +LLVN+ H LVP+H +L+ EK LL+RY L Sbjct: 132 TKTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKSKLLQRYRL 190 [160][TOP] >UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA7_PENMQ Length = 236 Score = 84.7 bits (208), Expect = 5e-15 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 23/181 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVIN--- 262 + NEM RL+R +TV EMLRDRGY + + E+ + +F K+ ++ RE + I Sbjct: 12 ARNEMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIP 71 Query: 263 ----KAK----KNKPSD--------QIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAIL 391 KAK K +P+D QI+V F E+ VG +R + + + N + I Sbjct: 72 SEAMKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIF 131 Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571 + +++++ + + A E FQE++LLVN+ H LVP+H +L+ EK LLERY Sbjct: 132 ITRTAISPSAVRLL-NSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190 Query: 572 L 574 L Sbjct: 191 L 191 [161][TOP] >UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays RepID=B6SJT2_MAIZE Length = 154 Score = 84.3 bits (207), Expect = 6e-15 Identities = 51/142 (35%), Positives = 77/142 (54%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E RL+ R+T +EML DRGY V + E+ + EFR + E L + PS Sbjct: 9 ESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSDPSS 68 Query: 290 QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 ++ V+F V I +R +K EN+ R IL+ Q + + ++ I E+ +F ++ F Sbjct: 69 KVKVVFCPPGPVKIAAIRLIYTEVKDENLARLILILQGKIMSPTRESIKEI-FRFKVDTF 127 Query: 470 QEAELLVNVKDHVLVPEHQVLT 535 Q ELLVN+ HVL P+H+VLT Sbjct: 128 QITELLVNITKHVLKPKHEVLT 149 [162][TOP] >UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4 Length = 287 Score = 84.3 bits (207), Expect = 6e-15 Identities = 54/159 (33%), Positives = 83/159 (52%), Gaps = 8/159 (5%) Frame = +2 Query: 122 LYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY---GENMKR-----EDLVINKAKKN 277 L IR + + D GY + D E+NM+ DEF+ K GE ++ A+K Sbjct: 85 LQTIRTKIWKSSGDIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKF 144 Query: 278 KPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFH 457 ++V F +E VGI +R + + +N I + Q+S+T S N + S Sbjct: 145 PEMGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTGIFIYQTSITP-SANKLIPTVSPAT 203 Query: 458 LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E+FQE++L+VN+ H LVP+H L+ EKK LL+RY L Sbjct: 204 IEVFQESDLVVNITHHELVPKHIRLSKPEKKELLDRYRL 242 [163][TOP] >UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus RepID=A1CP51_ASPCL Length = 234 Score = 83.2 bits (204), Expect = 1e-14 Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 22/180 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN- 277 ++ EMTRL+R +TV EML DRGY V + E+ + +EFR KY + + D K Sbjct: 11 ADREMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARP 70 Query: 278 ---------------KPSDQ-----IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILV 394 P Q IYV F + VG +R + + + N + + + Sbjct: 71 TAAMQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFI 130 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 Q+ ++ + + + + E FQE +LLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 131 TQTPISPSAVRLLSGIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 189 [164][TOP] >UniRef100_B2AZ24 Predicted CDS Pa_3_3870 n=1 Tax=Podospora anserina RepID=B2AZ24_PODAN Length = 235 Score = 82.8 bits (203), Expect = 2e-14 Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 22/179 (12%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY--GENMKREDLVINKAKKN 277 + E++RL+R +T+ EM+ DRGY + + E+ M DEF+ K+ G+ ++ A+ + Sbjct: 12 DKEVSRLWRAWRTIHEMVADRGYELAEEEIKMPLDEFKRKFTNGDGSPNRSIMSFSARPS 71 Query: 278 K----------------PSDQ---IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVC 397 P+ + I+V F PE+ +GI V++ ++ + + ILV Sbjct: 72 ASMIKKFTPPPTASNPDPAPECGTIWVEFCPEKTSIGISVMKKFVEHCANNSYKAGILVT 131 Query: 398 QSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +L+ Q++ + + +E F E +LLVN+ H LVP H +L+ EK LL+RY L Sbjct: 132 AVALSAQARKVMTVTSQYTLIECFLEEDLLVNITHHELVPTHILLSREEKMALLKRYRL 190 [165][TOP] >UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S900_9PEZI Length = 231 Score = 81.6 bits (200), Expect = 4e-14 Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 22/177 (12%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY-------------------GE 232 E+ R +R +TV EM DRGY + + E+ +S D FR +Y + Sbjct: 10 EVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSARPSSD 69 Query: 233 NMKREDLVINKAKKNKPSD--QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQS 403 + R + A N D IY+ F E+ +G+ LR ++ + + I+V S Sbjct: 70 MLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAGIMVTSS 129 Query: 404 SLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 LT+ + + + S +E F E +LLVN+ H LVP+H +L+ EK LL+RY L Sbjct: 130 PLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEKAALLKRYRL 186 [166][TOP] >UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum canis CBS 113480 RepID=C5FC74_NANOT Length = 236 Score = 81.6 bits (200), Expect = 4e-14 Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 24/182 (13%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAK--- 271 ++ EM RL+R +TV E+L DRGY V + EV +S EFR +Y + + D NK + Sbjct: 13 ADREMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDR--NKMRISA 70 Query: 272 ---------------KNKPS-----DQIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAI 388 +KP+ I+V F E + VG +R + + +N + I Sbjct: 71 RPSQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGI 130 Query: 389 LVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 + QS ++ + + + +F E F E ELLVN+ H LVP+H +L+ EKK LL+RY Sbjct: 131 FITQSPISPSAIRLLTAIPGRF-CEHFLEQELLVNITHHELVPKHILLSAEEKKKLLQRY 189 Query: 569 TL 574 L Sbjct: 190 RL 191 [167][TOP] >UniRef100_B8M3B9 RNA polymerase subunit n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M3B9_TALSN Length = 236 Score = 81.6 bits (200), Expect = 4e-14 Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 23/181 (12%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM---KREDLVIN--- 262 + NEM RL+R +TV EMLRDRGY + + EV + +F K+G R + I Sbjct: 12 ARNEMARLWRTWRTVHEMLRDRGYEMSEEEVKIDYQDFANKFGGEHGYPSRAKMTIAAMP 71 Query: 263 ----KAK----KNKPSDQ--------IYVLFPEEVK-VGIHVLRTYINRMKSENVYRAIL 391 KAK K + SD IYV F E+ VG +R + + + N + I Sbjct: 72 SEAMKAKYTPLKKRVSDPDPVPDCGPIYVQFCEDTTGVGAKQVRAFNHLVDEGNYHSGIF 131 Query: 392 VCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYT 571 + +++++ + + E FQE++LLVN+ H LVP+H +L+ EK LLERY Sbjct: 132 ITRTAISPSAMRLLSSAVGHI-CEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYR 190 Query: 572 L 574 L Sbjct: 191 L 191 [168][TOP] >UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA Length = 202 Score = 80.9 bits (198), Expect = 7e-14 Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 2/160 (1%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNK 280 S + + +RI T+ +M+RDRGY V + +S D+F + Y N +N+ N Sbjct: 2 SSEKESMYFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPHN----LNECYSNM 57 Query: 281 PSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQS--KNFIFEMASKF 454 ++I F ++ ++T I M V RAI++ + T + +N +S Sbjct: 58 EGERILTFFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAARNLDNVRSSGK 117 Query: 455 HLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E F E+++N+ +H LVP+H+VLT+ EK+ +L+RY + Sbjct: 118 TIEFFSFDEVIINITEHELVPKHEVLTEDEKQEVLKRYNV 157 [169][TOP] >UniRef100_UPI0000163400 DNA binding / DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana RepID=UPI0000163400 Length = 87 Score = 79.7 bits (195), Expect = 1e-13 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 2/78 (2%) Frame = +2 Query: 338 LRTYINRMKSENVYRAILVCQS--SLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVL 511 ++ YI+++KS NV+RAILV Q + + Q+ F+ + FH+E+FQE EL+VNVK+HV Sbjct: 1 MKKYIDQLKSANVFRAILVVQDIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVF 60 Query: 512 VPEHQVLTDTEKKTLLER 565 VPEHQ LT EK+ LER Sbjct: 61 VPEHQALTTEEKQKFLER 78 [170][TOP] >UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR Length = 234 Score = 77.4 bits (189), Expect = 7e-13 Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 26/184 (14%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN- 277 + E++RL+R +TV EM++DRGY + + EV +S + F+ +Y ED N+AK Sbjct: 10 ASKEVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEY----TNEDGTPNRAKLQF 65 Query: 278 --KPSDQIYVLFP-----------------------EEVKVGIHVLRTYINRMKSENVYR 382 +PS+ + F E+ +G+ V++ ++ Sbjct: 66 SARPSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKA 125 Query: 383 AILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLE 562 I + L+ Q++ + + +E F E +LLVN+ H LVP+H +L+ EK LL+ Sbjct: 126 GIFITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEKAALLK 185 Query: 563 RYTL 574 RY L Sbjct: 186 RYRL 189 [171][TOP] >UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M1H8_ARATH Length = 233 Score = 77.0 bits (188), Expect = 9e-13 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 1/156 (0%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSD 289 E R Y R T EMLRDRGY V + E++++ EFR +GE + E L I ++ P Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94 Query: 290 QIYVLFPEEVKVGIHVLRT-YINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466 +I V+F + + +R +I + ++ ILV QS + ++ + F +E Sbjct: 95 KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKAL--TTFPFTVET 152 Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 F +LLVN+ H+ P+ ++L EK+ LL ++ L Sbjct: 153 FPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKHAL 188 [172][TOP] >UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UZB4_PHANO Length = 277 Score = 75.1 bits (183), Expect = 4e-12 Identities = 55/184 (29%), Positives = 91/184 (49%), Gaps = 30/184 (16%) Frame = +2 Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN---KP 283 + R++R+ +T EM+ +RGY V D E+ MS + F +KY RED ++++ N P Sbjct: 53 LIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAFADKYA----REDGEPDRSRLNFSSTP 108 Query: 284 SDQ----------------------IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVC 397 S++ I+ F + VG+ LR ++N + S + Y I+V Sbjct: 109 SEEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGLKQLRDFMNHLGSGSFYSGIMVT 168 Query: 398 QSSLTTQSKNFIFEMAS-----KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLE 562 +T + + ++ K +E+F E +LLVN+ H LVP+H +L+ EK LL Sbjct: 169 VKPITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVNITKHELVPKHVLLSAEEKAQLLT 228 Query: 563 RYTL 574 RY L Sbjct: 229 RYRL 232 [173][TOP] >UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VBP1_NOSCE Length = 204 Score = 75.1 bits (183), Expect = 4e-12 Identities = 48/149 (32%), Positives = 83/149 (55%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIY 298 + + R T++EM +RGY D +V +S D F ++ + ++ IN KN + + Sbjct: 7 KFFLCRNTLVEMCTERGYTT-DQKV-LSYDNFIAQF-PSCDKDVNSINFVCKNA-DNLVG 62 Query: 299 VLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEA 478 + F ++ K+G + I KS N+Y ILV +++ S+N + S +EIF++ Sbjct: 63 IHFIDDEKIGKSSIEKVIETYKSINIYHLILVINQKMSSASQNIV--NVSDLKIEIFKDE 120 Query: 479 ELLVNVKDHVLVPEHQVLTDTEKKTLLER 565 EL+ N+ HV VP H++L DTEK ++LE+ Sbjct: 121 ELMFNITKHVSVPRHRILNDTEKNSILEK 149 [174][TOP] >UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7Z7I7_NECH7 Length = 234 Score = 73.9 bits (180), Expect = 8e-12 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 21/176 (11%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKY------------------GEN 235 E+ RL+R +TV EM+ DR Y + + EV +S D FR++Y E+ Sbjct: 14 EVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSINRAKLQFSARPSES 73 Query: 236 MKREDLVINKAKKNKPSDQ---IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSS 406 M R+ A K P I+V F + G+ +R + + + + I+V Sbjct: 74 MLRKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTGIMVTHVP 133 Query: 407 LTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 L+ ++ + + S +E F E +LLVN+ H LVP+H +L+ EK LL+RY L Sbjct: 134 LSPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEKTALLKRYRL 189 [175][TOP] >UniRef100_A9USL7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9USL7_MONBE Length = 176 Score = 73.6 bits (179), Expect = 1e-11 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 5/168 (2%) Frame = +2 Query: 86 ATMVFSENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYG-----ENMKRED 250 A +++ + RL+R+R T+ ++ +DRGY V ++ ++++ F E++G E +R D Sbjct: 2 AEEALNQSLLYRLWRVRVTLAQLCQDRGYDVKSEDLLLTREGFAERFGSQPLNEQPRRSD 61 Query: 251 LVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNF 430 L + + P+DQ+ V F + KVGI V+R Sbjct: 62 LDFVVQRASDPTDQLGVYFANDPKVGIAVVR----------------------------- 92 Query: 431 IFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + F+E EL+VNV H LVP+H + T EK LLERY L Sbjct: 93 ----------DFFEEKELVVNVTKHELVPKHFLQTPEEKAALLERYKL 130 [176][TOP] >UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023E584 Length = 253 Score = 71.6 bits (174), Expect = 4e-11 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 25/180 (13%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE-------NMKREDLVINK- 265 E+ RL+R +TV EM+ DR Y + + EV +S D FR++Y N R L + Sbjct: 14 EVVRLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSAR 73 Query: 266 ---------------AKKNKPSD--QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILV 394 A + +D I++ F + G+ +R + + + S N I++ Sbjct: 74 PSTAMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIMI 133 Query: 395 CQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 L+ ++ + + S +E F E +LLVN+ H LVP+H +L+ EK LL+RY L Sbjct: 134 THVPLSPAARRSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSREEKIALLKRYRL 193 [177][TOP] >UniRef100_Q0D0C1 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0D0C1_ASPTN Length = 219 Score = 70.5 bits (171), Expect = 9e-11 Identities = 53/166 (31%), Positives = 90/166 (54%), Gaps = 6/166 (3%) Frame = +2 Query: 95 VFSENEMTRLYRIRKTVMEMLRDRG--YLVGDFEVNMSKDEFREKYGENMKREDLVINKA 268 V ++ EMTRL+R +TV EML+DR + + +K + + + E M+ + + K Sbjct: 10 VDADREMTRLWRTWRTVFEMLQDRPSPQRILLTLASRAKMKIQARPTEAMQVKYTPLTKQ 69 Query: 269 KKNK-PSD--QIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 ++ P+D IYV F P+ VG +R + + + N + I + Q+ ++ + + Sbjct: 70 GQSPAPADCGTIYVEFCPDSSGVGTKQVRAFNHTVDEHNFHTGIFITQTPISPSAVRLLS 129 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + + E FQE +LLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 130 GVPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKRLLDRYRL 174 [178][TOP] >UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QW70_MAGGR Length = 259 Score = 70.5 bits (171), Expect = 9e-11 Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 22/174 (12%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE---NMKREDLVINK-------- 265 +L+R +T+ +ML DRGY + + E N+S + F + + N+ + L + Sbjct: 12 KLWRAWRTIHQMLSDRGYELSEEECNISIERFLADFTDGNGNVDQSKLTFSARPSDAMLK 71 Query: 266 --AKKNKPSD--------QIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTT 415 A+ P+D I+V F E K+G+ + ++ + ILV Q +L++ Sbjct: 72 LHARIPTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDGILVTQGALSS 131 Query: 416 QSKNFIFEMASKFH-LEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 ++ + S + +E F +LLVN+ H LVP+H +L+ EKK LLERY L Sbjct: 132 GARRALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKKALLERYRL 185 [179][TOP] >UniRef100_Q4YN15 DNA-directed RNA polymerase 2, putative (Fragment) n=1 Tax=Plasmodium berghei RepID=Q4YN15_PLABE Length = 107 Score = 69.7 bits (169), Expect = 2e-10 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 2/105 (1%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 E+ +TR Y+ RKT EML DRGY++ E + F+E + EN K R + I + KN Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61 Query: 281 PSDQIYVLFPEEV-KVGIHVLRTYINRMKSENVYRAILVCQSSLT 412 +++I V F +EV K G+ LR +M +++ RAILV Q++LT Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLRELTEKMDEKSIQRAILVTQNTLT 106 [180][TOP] >UniRef100_B5LZ31 RNA polymerase II (Fragment) n=1 Tax=Psetta maxima RepID=B5LZ31_PSEMX Length = 87 Score = 69.3 bits (168), Expect = 2e-10 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 5/84 (5%) Frame = +2 Query: 188 EVNMSKDEFREKYGENM-----KREDLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYI 352 E++ + DEF+ ++G+ +R DL + A + P+DQ++V FPEE KVGI ++ Y Sbjct: 3 ELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKMYC 62 Query: 353 NRMKSENVYRAILVCQSSLTTQSK 424 RM+ EN+ RAI+V Q +T +K Sbjct: 63 QRMQEENITRAIIVVQMGMTPSAK 86 [181][TOP] >UniRef100_Q2H038 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2H038_CHAGB Length = 220 Score = 69.3 bits (168), Expect = 2e-10 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Frame = +2 Query: 110 EMTRL-YRIRKTVMEMLRDR---GYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKN 277 E+TRL Y + + +++ DR Y D N SK +F + E+M ++ Sbjct: 13 EVTRLDYELAEDEVKISLDRFRLEYTNDDGSPNRSKMQFSARPSESMIKKFTPPPTPSNP 72 Query: 278 KPSDQ---IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMA 445 P+ + I+V F PE+ +GI+V++ ++ + N ILV +L+ Q++ + + Sbjct: 73 DPAPECGTIWVEFCPEKASIGINVMKKFVEHCGTNNFKAGILVTAVALSAQARKVMTVTS 132 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +E F E +LLVN+ H LVP+H +L+ EK LL+RY L Sbjct: 133 QYTLIECFLEEDLLVNITHHELVPKHVLLSREEKTALLKRYRL 175 [182][TOP] >UniRef100_B4DJ89 cDNA FLJ55074, highly similar to DNA-directed RNA polymerase II 23 kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B4DJ89_HUMAN Length = 117 Score = 68.6 bits (166), Expect = 3e-10 Identities = 33/72 (45%), Positives = 47/72 (65%) Frame = +2 Query: 359 MKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTD 538 M+ EN+ RA++V Q +T +K + +MA K+ LE F + ELL+N+ +H LVPEH V+T Sbjct: 1 MQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFLQQELLINITEHELVPEHVVMTK 60 Query: 539 TEKKTLLERYTL 574 E LL RY L Sbjct: 61 EEVTELLARYKL 72 [183][TOP] >UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans RepID=Q59PF3_CANAL Length = 179 Score = 68.6 bits (166), Expect = 3e-10 Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 9/135 (6%) Frame = +2 Query: 197 MSKDEFREKYGENM---KREDLVINKA------KKNKPSDQIYVLFPEEVKVGIHVLRTY 349 M+ +EFR K ++M +R+ + +K + ++V F +E VGI +R + Sbjct: 1 MTLEEFRSKICDSMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNF 60 Query: 350 INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQV 529 + +N I + Q+S+T S N + S +EIFQE +L+VN+ H LVP+H Sbjct: 61 CIHITEKNFSTGIFIYQNSMTP-SANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLK 119 Query: 530 LTDTEKKTLLERYTL 574 L EKK LL RY L Sbjct: 120 LNREEKKELLTRYRL 134 [184][TOP] >UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE Length = 126 Score = 67.4 bits (163), Expect = 7e-10 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 5/92 (5%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-----REDLVINKA 268 E E+ +L+ IRKTV EM DRGYLV E++ + ++F E +G+ R DL + Sbjct: 8 EAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMVLT 67 Query: 269 KKNKPSDQIYVLFPEEVKVGIHVLRTYINRMK 364 + P +++ V FPEE KV + ++ + NRM+ Sbjct: 68 HADDPKNRMLVFFPEEPKVAVRTIKAFANRMR 99 [185][TOP] >UniRef100_A5DHL4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Pichia guilliermondii RepID=A5DHL4_PICGU Length = 179 Score = 66.6 bits (161), Expect = 1e-09 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Frame = +2 Query: 197 MSKDEFREKYGENMKREDLVINKAKKNKPSD---------QIYVLFPEEVKVGIHVLRTY 349 MS DEFR K ++M + + N ++ ++V F +E VGI +R + Sbjct: 1 MSLDEFRSKICDSMGLPQRKMMCFQANPTAEALEKFPDMGSLWVEFCDEASVGIKTMRNF 60 Query: 350 INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQV 529 + +N I + Q+S+T S N + + +E FQE++L+VN+ H LVP+H Sbjct: 61 CIHISEKNFSTGIFIYQNSITP-SANKLVPTVAPASIETFQESDLIVNITHHDLVPKHIK 119 Query: 530 LTDTEKKTLLERYTL 574 L+ EKK LL RY L Sbjct: 120 LSIGEKKELLARYRL 134 [186][TOP] >UniRef100_A5E1U0 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Lodderomyces elongisporus RepID=A5E1U0_LODEL Length = 179 Score = 65.5 bits (158), Expect = 3e-09 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Frame = +2 Query: 197 MSKDEFREKYGENM---KREDLVINKAKKNKPSDQ------IYVLFPEEVKVGIHVLRTY 349 M+ +EFR K ++M +R+ + + D+ ++V F +E VGI +R + Sbjct: 1 MTLEEFRAKVCDSMGYPQRKLMCFQATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNF 60 Query: 350 INRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQV 529 + +N I + Q+S+T S N + +E FQE +L+VN+ H LVP+H Sbjct: 61 CIHISEKNFQVGIFIYQNSITP-SANKLIPTVQPASIETFQETDLIVNITHHELVPKHIK 119 Query: 530 LTDTEKKTLLERYTL 574 L EKK LLERY L Sbjct: 120 LNREEKKELLERYRL 134 [187][TOP] >UniRef100_Q388R5 DNA-directed RNA polymerases II subunit, putative n=1 Tax=Trypanosoma brucei RepID=Q388R5_9TRYP Length = 219 Score = 65.1 bits (157), Expect = 4e-09 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQI- 295 R++R+ +TV EM+RDR Y V + + +F E+Y + RE I + + P +++ Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGRRIYRERMTVPCERVG 73 Query: 296 -------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNF---IFEMA 445 V F E+ G+ ++ Y N R I+V + K + I Sbjct: 74 GTHRSRAMVFFASEL--GMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYVDCINRSG 131 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +++F E +L+VN+ H LVP+H L D E K +LE ++L Sbjct: 132 TGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSL 174 [188][TOP] >UniRef100_C9ZZV1 DNA-directed RNA polymerases II subunit, putative n=2 Tax=Trypanosoma brucei RepID=C9ZZV1_TRYBG Length = 219 Score = 65.1 bits (157), Expect = 4e-09 Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 11/163 (6%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQI- 295 R++R+ +TV EM+RDR Y V + + +F E+Y + RE I + + P +++ Sbjct: 17 RMFRVMRTVGEMMRDRKYQVPSSIIPETVGQFCEQY---VDREGKRIYRERMTVPCERVG 73 Query: 296 -------YVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNF---IFEMA 445 V F E+ G+ ++ Y N R I+V + K + I Sbjct: 74 GTHRSRAMVFFASEL--GMEGMKGYCQTAMDANCERVIIVTHGKVNATVKRYVDCINRSG 131 Query: 446 SKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + +++F E +L+VN+ H LVP+H L D E K +LE ++L Sbjct: 132 TGQKVQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLEAHSL 174 [189][TOP] >UniRef100_Q6MY78 DNA-directed RNA polymerase, putative n=1 Tax=Aspergillus fumigatus RepID=Q6MY78_ASPFU Length = 220 Score = 65.1 bits (157), Expect = 4e-09 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Frame = +2 Query: 101 SENEMTRLYRIRKTVMEMLRDRG------YLVGDFEVNMSKDEFREKYGENMKREDLVIN 262 ++ EMTRL+R +TV EML DR + + + K R K L Sbjct: 11 ADREMTRLWRTWRTVFEMLADRPRSTRLTHFLQPYSRTKMKISARPTAAMQAKYTPLPTP 70 Query: 263 KAKKNKPS-DQIYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIF 436 +P IYV F + VG +R + + + N + + + Q+ ++ + + Sbjct: 71 ANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLS 130 Query: 437 EMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + + E FQE +LLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 131 GIPGRI-CEHFQEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 175 [190][TOP] >UniRef100_Q7RKX0 RNA polymerase Rpb5, C-terminal domain, putative n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RKX0_PLAYO Length = 112 Score = 64.3 bits (155), Expect = 6e-09 Identities = 33/73 (45%), Positives = 49/73 (67%) Frame = +2 Query: 356 RMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLT 535 +M +++ RAILV Q++LT +K+ I E A + +E F + ELLVN+ H LVP+H LT Sbjct: 9 KMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLT 68 Query: 536 DTEKKTLLERYTL 574 EK+ LL+RY + Sbjct: 69 SDEKRNLLQRYKI 81 [191][TOP] >UniRef100_Q4XTK3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium chabaudi RepID=Q4XTK3_PLACH Length = 126 Score = 64.3 bits (155), Expect = 6e-09 Identities = 33/73 (45%), Positives = 49/73 (67%) Frame = +2 Query: 356 RMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLT 535 +M +++ RAILV Q++LT +K+ I E A + +E F + ELLVN+ H LVP+H LT Sbjct: 9 KMDEKSIQRAILVTQNTLTPFAKDAIKEAAPRHIIENFLDTELLVNITKHELVPKHIPLT 68 Query: 536 DTEKKTLLERYTL 574 EK+ LL+RY + Sbjct: 69 SDEKRNLLQRYKI 81 [192][TOP] >UniRef100_Q8T1Q5 DNA-directed RNA polymerases II, putative n=1 Tax=Trypanosoma cruzi RepID=Q8T1Q5_TRYCR Length = 219 Score = 63.9 bits (154), Expect = 8e-09 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Frame = +2 Query: 119 RLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIY 298 +++R+ +TV EM+ DR Y V D + S +EF++ Y + RE VI + + P ++I Sbjct: 17 KMFRVMRTVGEMMCDRKYQVADKIIPSSVEEFKDWYTD--PREG-VIYRDRMTVPCERIG 73 Query: 299 VLFPEEVKV------GIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASK--- 451 V V + ++ Y + N R I+V Q + K + ++ Sbjct: 74 VSQRSRAMVFFSEGLSMETMKRYHTQASEANCDRVIIVVQGRINAIVKRHVEDINRSSLG 133 Query: 452 FHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 +++F E +L+VN+ H LVP+H L D E K +L+ + L Sbjct: 134 LKIQLFDEDDLVVNITHHELVPKHTQLEDEEVKEMLQAHAL 174 [193][TOP] >UniRef100_Q8CI23 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Mus musculus RepID=Q8CI23_MOUSE Length = 96 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 5/76 (6%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGE-----NMKREDLVINKA 268 E E RL++IRKT+M++ DRGYLV E++ + +EF+ ++G+ +R DL + A Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63 Query: 269 KKNKPSDQIYVLFPEE 316 + P+DQ++V FP E Sbjct: 64 HNDDPTDQMFVFFPGE 79 [194][TOP] >UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans RepID=Q3LW39_BIGNA Length = 204 Score = 62.8 bits (151), Expect = 2e-08 Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Frame = +2 Query: 113 MTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK--REDLVINKAKKNKPS 286 + + Y ++ EML RGY V +N++ +F++K E + + +IN N + Sbjct: 6 LEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHL--NDTN 63 Query: 287 DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466 ++I + + + ++ L I + K+ N I + + L+ Q+ + F++EI Sbjct: 64 NKIIGFYNNKGLIDVNYLGLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNIEI 123 Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 F E E+L+N H LVP+H +L K+ +L+ Y + Sbjct: 124 FFEYEILINPIKHFLVPKHVLLAPDIKRKILKSYNV 159 [195][TOP] >UniRef100_UPI0001925DCF PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide E, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001925DCF Length = 187 Score = 61.2 bits (147), Expect = 5e-08 Identities = 44/131 (33%), Positives = 61/131 (46%) Frame = +2 Query: 182 DFEVNMSKDEFREKYGENMKREDLVINKAKKNKPSDQIYVLFPEEVKVGIHVLRTYINRM 361 D E N++KD ++ + K D +I K Q++V FPEE KVGI ++ Y RM Sbjct: 24 DIEWNIAKDI---EWNIDKKNHDKLIKLFDSTKY--QMFVFFPEEEKVGIKTIKQYCTRM 78 Query: 362 KSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDT 541 + E + RAI+V Q+ +T +K LVPEH VL+ Sbjct: 79 QEEGINRAIIVVQTGMTPSAKQ---------------------------LVPEHVVLSPE 111 Query: 542 EKKTLLERYTL 574 EK LL RY L Sbjct: 112 EKAELLTRYKL 122 [196][TOP] >UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B0H1_VITVI Length = 162 Score = 60.5 bits (145), Expect = 9e-08 Identities = 32/94 (34%), Positives = 55/94 (58%) Frame = +2 Query: 293 IYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIFQ 472 I V+F ++ V+R ++ E ++R ILV QS + + ++ + E K +E FQ Sbjct: 26 ILVVFCGTDEIRKAVIRVIFQQINREGLHRLILVLQSKMNSHARKVVDEYPIK--VEFFQ 83 Query: 473 EAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 ELL+N+ HV VP+H++L+ EK+ L+ +Y L Sbjct: 84 ITELLINITKHVSVPKHEILSAQEKRKLVNKYKL 117 [197][TOP] >UniRef100_A0BL34 Chromosome undetermined scaffold_113, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BL34_PARTE Length = 224 Score = 59.7 bits (143), Expect = 2e-07 Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 17/165 (10%) Frame = +2 Query: 125 YRIRKTVMEMLRDRGYLVGDFEVN---MSKDE----FREKYGENMKREDLVINKAKKNKP 283 Y++ +T+ M+R RGY FE N + +DE F KY ++ + +V K K+++ Sbjct: 18 YKVFQTLASMIRQRGY----FEANPPILIEDEPFELFEAKYRTDVLPQRVVCFK-KEDET 72 Query: 284 SDQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSS--------LTTQSKNFIFE 439 + + ++ + + YI+ + + V R I+V + + +++ FI + Sbjct: 73 DKMVIQFYTKQTALNYDDAKKYISELSNRQVKRLIMVFPTDPFATKPQVVEKKARFFIDQ 132 Query: 440 MAS--KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERY 568 + S + E+F E +L+ +V H LVP+H +L D EK+ LL++Y Sbjct: 133 VNSIQTYSFELFGEDDLVYDVTKHELVPQHIILNDKEKELLLKKY 177 [198][TOP] >UniRef100_C0S407 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0S407_PARBP Length = 171 Score = 59.3 bits (142), Expect = 2e-07 Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 1/95 (1%) Frame = +2 Query: 293 IYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 IYV F +++ VG +R + + + +N + I + Q+ ++ + + + +F E F Sbjct: 33 IYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIFISQTPISPSAMRVLNSIPGRF-CEHF 91 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 QE ELLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 92 QEQELLVNITHHELVPKHILLSAEEKKRLLQRYRL 126 [199][TOP] >UniRef100_Q7RKX1 Putative uncharacterized protein PY02778 n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RKX1_PLAYO Length = 91 Score = 57.4 bits (137), Expect = 8e-07 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 2/89 (2%) Frame = +2 Query: 104 ENEMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENMK-REDLVINKAKKNK 280 E+ +TR Y+ RKT EML DRGY++ E + F+E + EN K R + I + KN Sbjct: 2 EDPVTRFYKCRKTCCEMLEDRGYIITAREKLENFAAFKELFEENEKLRSRMTIITSHKND 61 Query: 281 PSDQIYVLFPEEV-KVGIHVLRTYINRMK 364 +++I V F +EV K G+ LR Y ++K Sbjct: 62 ANNKIIVYFVDEVKKTGVKPLREYNKKIK 90 [200][TOP] >UniRef100_Q8SRJ3 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRJ3_ENCCU Length = 212 Score = 57.4 bits (137), Expect = 8e-07 Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 1/156 (0%) Frame = +2 Query: 110 EMTRLYRIRKTVMEMLRDRGYLVGDFEVNMSKDEFREKYGENM-KREDLVINKAKKNKPS 286 E+ L R T +EM+RDRGY EV ++ D F E+Y + KR L ++P Sbjct: 14 ELRALCLSRNTAIEMVRDRGYTTTQ-EV-LALDGFHERYPLALTKRSTLNFVCVNVDRP- 70 Query: 287 DQIYVLFPEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEI 466 + V F ++ K+G +++ + +N++ IL+ L + + + + +F +EI Sbjct: 71 --VAVHFGDDEKMGKKAFEGLLSQYEKDNMFHLILILPQ-LPSPTVMSMIPLTPRFSIEI 127 Query: 467 FQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 F EL+ N H VP H+VL+ E++++ L Sbjct: 128 FLVEELIFNKTKHSWVPPHRVLSREERESVFRTLKL 163 [201][TOP] >UniRef100_A0BLZ0 Chromosome undetermined scaffold_115, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BLZ0_PARTE Length = 223 Score = 57.0 bits (136), Expect = 1e-06 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 15/165 (9%) Frame = +2 Query: 125 YRIRKTVMEMLRDRGYLVGDFEVNMSKDE----FREKYGENMKREDLVINKAKKNKPSDQ 292 Y+I +T+ M+R RGY + +DE F KY +N+ + + K++ SD+ Sbjct: 18 YKIFQTLASMIRQRGYFEST-PAKLVEDETFEIFESKYRDNLPEKIVCF---KRDDESDK 73 Query: 293 IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSS--------LTTQSKNFIFEMA 445 + ++F ++ + + I + V R I++ + + +++ FI ++ Sbjct: 74 LLIIFYTKQAPLTHEEAKKTIQDFSNRQVKRLIMIFPTDPFATKPQVVDKKARLFIDQVN 133 Query: 446 S--KFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 S + E+F E +L+ +V H LVP+H +L D EK+ LL++Y L Sbjct: 134 SIQTYSFELFGEDDLVYDVTKHELVPQHIILNDREKELLLKKYGL 178 [202][TOP] >UniRef100_UPI0001B7AB22 UPI0001B7AB22 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0001B7AB22 Length = 79 Score = 56.6 bits (135), Expect = 1e-06 Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 7/76 (9%) Frame = +2 Query: 104 ENEMTRLYRIRKTVME--MLRDRGYLVGDFEVNMSKDEFREKYGE-----NMKREDLVIN 262 E E RL++IRKT+M+ + DRGYLV E++ + +EF+ ++G+ +R DL + Sbjct: 4 EEETYRLWKIRKTIMQATLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVL 63 Query: 263 KAKKNKPSDQIYVLFP 310 A + P+DQ++V FP Sbjct: 64 VAHNDDPTDQMFVFFP 79 [203][TOP] >UniRef100_B6QBA8 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QBA8_PENMQ Length = 172 Score = 53.9 bits (128), Expect = 9e-06 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 9/110 (8%) Frame = +2 Query: 272 KNKPSD--------QIYVLFPEEVK-VGIHVLRTYINRMKSENVYRAILVCQSSLTTQSK 424 K +P+D QI+V F E+ VG +R + + + N + I + +++++ + Sbjct: 19 KKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHLVDEGNYHSGIFITRTAISPSAV 78 Query: 425 NFIFEMASKFHLEIFQEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 + A E FQE++LLVN+ H LVP+H +L+ EK LLERY L Sbjct: 79 RLL-NSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEKARLLERYRL 127 [204][TOP] >UniRef100_B0XMP1 RNA polymerase subunit n=2 Tax=Aspergillus fumigatus RepID=B0XMP1_ASPFC Length = 171 Score = 53.9 bits (128), Expect = 9e-06 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Frame = +2 Query: 293 IYVLF-PEEVKVGIHVLRTYINRMKSENVYRAILVCQSSLTTQSKNFIFEMASKFHLEIF 469 IYV F + VG +R + + + N + + + Q+ ++ + + + + E F Sbjct: 33 IYVEFCADSTGVGTKQVRAFNHFVDENNFHTGVFITQTPISPSAVRLLSGIPGRI-CEHF 91 Query: 470 QEAELLVNVKDHVLVPEHQVLTDTEKKTLLERYTL 574 QE +LLVN+ H LVP+H +L+ EKK LL+RY L Sbjct: 92 QEQDLLVNITRHELVPKHVLLSPEEKKNLLQRYRL 126