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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 355 bits (911), Expect = 1e-96
Identities = 173/191 (90%), Positives = 180/191 (94%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIEC KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQ NRH LPCQVG
Sbjct: 193 ELVVIECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVG 252
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSREWGH+L RLMRP TNEAINCDYS FDGLLNAQVIECIA MIN+LYALSGESEVQ
Sbjct: 253 TNPYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQ 312
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
QAQRYNMLMALVGRYAFVG +V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAPKPE
Sbjct: 313 QAQRYNMLMALVGRYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE 372
Query: 541 KCRFQQTVCLI 573
+ RF Q VCL+
Sbjct: 373 RNRFNQVVCLL 383
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 355 bits (911), Expect = 1e-96
Identities = 173/191 (90%), Positives = 180/191 (94%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIEC KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQ NRH LPCQVG
Sbjct: 1633 ELVVIECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHVLPCQVG 1692
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSREWGH+L RLMRP TNEAINCDYS FDGLLNAQVIECIA MIN+LYALSGESEVQ
Sbjct: 1693 TNPYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNAQVIECIAKMINRLYALSGESEVQ 1752
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
QAQRYNMLMALVGRYAFVG +V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAPKPE
Sbjct: 1753 QAQRYNMLMALVGRYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPE 1812
Query: 541 KCRFQQTVCLI 573
+ RF Q VCL+
Sbjct: 1813 RNRFNQVVCLL 1823
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 353 bits (906), Expect = 5e-96
Identities = 171/191 (89%), Positives = 180/191 (94%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIEC KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQ NRHRLPCQVG
Sbjct: 193 ELVVIECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVG 252
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSREWGH+L RLMRP TNEAINCDYS FDGLLN Q+IECIA MIN+LYALSGES+VQ
Sbjct: 253 TNPYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQ 312
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
QAQRYNMLMALVGRYAFVGQ+V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAP PE
Sbjct: 313 QAQRYNMLMALVGRYAFVGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPE 372
Query: 541 KCRFQQTVCLI 573
+ RF TVCL+
Sbjct: 373 RNRFGSTVCLL 383
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 353 bits (906), Expect = 5e-96
Identities = 171/191 (89%), Positives = 180/191 (94%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIEC KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQ NRHRLPCQVG
Sbjct: 1635 ELVVIECTKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQHNRHRLPCQVG 1694
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSREWGH+L RLMRP TNEAINCDYS FDGLLN Q+IECIA MIN+LYALSGES+VQ
Sbjct: 1695 TNPYSREWGHMLNRLMRPKTNEAINCDYSGFDGLLNPQLIECIARMINRLYALSGESDVQ 1754
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
QAQRYNMLMALVGRYAFVGQ+V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAP PE
Sbjct: 1755 QAQRYNMLMALVGRYAFVGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPE 1814
Query: 541 KCRFQQTVCLI 573
+ RF TVCL+
Sbjct: 1815 RNRFGSTVCLL 1825
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 308 bits (789), Expect = 2e-82
Identities = 150/191 (78%), Positives = 162/191 (84%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIECPKDELLP RKIKVG CRLFEIMPLHYNL LR KTCAFT FLQ NRHRLPCQVG
Sbjct: 191 ELVVIECPKDELLPARKIKVGPCRLFEIMPLHYNLLLRVKTCAFTAFLQHNRHRLPCQVG 250
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSREWGH+L RL R TNEAINCDYS FDGLL Q++E +A MIN+LY SGESEV
Sbjct: 251 TNPYSREWGHLLNRLRRVKTNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEVM 310
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
QAQR NM+MAL GRYA VG +V+KVNCGLPSGFALTVV+NS+FNEILIRYAY+ LAP PE
Sbjct: 311 QAQRLNMIMALCGRYALVGTQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPE 370
Query: 541 KCRFQQTVCLI 573
K F VCL+
Sbjct: 371 KNSFGINVCLL 381
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 308 bits (789), Expect = 2e-82
Identities = 150/191 (78%), Positives = 162/191 (84%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIECPKDELLP RKIKVG CRLFEIMPLHYNL LR KTCAFT FLQ NRHRLPCQVG
Sbjct: 1617 ELVVIECPKDELLPARKIKVGPCRLFEIMPLHYNLLLRVKTCAFTAFLQHNRHRLPCQVG 1676
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSREWGH+L RL R TNEAINCDYS FDGLL Q++E +A MIN+LY SGESEV
Sbjct: 1677 TNPYSREWGHLLNRLRRVKTNEAINCDYSGFDGLLTPQLVEMMAKMINRLYLRSGESEVM 1736
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
QAQR NM+MAL GRYA VG +V+KVNCGLPSGFALTVV+NS+FNEILIRYAY+ LAP PE
Sbjct: 1737 QAQRLNMIMALCGRYALVGTQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPE 1796
Query: 541 KCRFQQTVCLI 573
K F VCL+
Sbjct: 1797 KNSFGINVCLL 1807
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 230 bits (586), Expect = 7e-59
Identities = 116/191 (60%), Positives = 141/191 (73%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIECPKDELL K+ ACR FEIMPLHYNLFLR+KT AF+ F Q NRH+L CQVG
Sbjct: 203 ELVVIECPKDELLKTEKVNK-ACRPFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVG 261
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
T YS +W H+ RL+ ++ AINCDYS+FDGLLN+QV+ CIANMIN +Y E+ V
Sbjct: 262 TKAYSHDWTHMYQRLVAK-SDRAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVS 320
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
+ QRYNM+ AL GR A GQ+V +V GLPSGFALTVV+NSVFNEIL+RY ++ L P+
Sbjct: 321 KRQRYNMINALFGRLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQ 380
Query: 541 KCRFQQTVCLI 573
+ F V L+
Sbjct: 381 RNSFSTYVTLL 391
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 230 bits (586), Expect = 7e-59
Identities = 116/191 (60%), Positives = 141/191 (73%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
ELVVIECPKDELL K+ ACR FEIMPLHYNLFLR+KT AF+ F Q NRH+L CQVG
Sbjct: 1693 ELVVIECPKDELLKTEKVNK-ACRPFEIMPLHYNLFLREKTLAFSLFQQRNRHKLACQVG 1751
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
T YS +W H+ RL+ ++ AINCDYS+FDGLLN+QV+ CIANMIN +Y E+ V
Sbjct: 1752 TKAYSHDWTHMYQRLVAK-SDRAINCDYSSFDGLLNSQVVSCIANMINSMYHSPEETVVS 1810
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
+ QRYNM+ AL GR A GQ+V +V GLPSGFALTVV+NSVFNEIL+RY ++ L P+
Sbjct: 1811 KRQRYNMINALFGRLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQ 1870
Query: 541 KCRFQQTVCLI 573
+ F V L+
Sbjct: 1871 RNSFSTYVTLL 1881
[9][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 182 bits (462), Expect = 2e-44
Identities = 94/175 (53%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RK+ R F I+P+ YNL +R+K F +F+ NRHRL CQVG
Sbjct: 195 LVGIECPKDEKLPMRKVFDKPKTRCFTILPMEYNLVVRRKFLNFVRFIMANRHRLSCQVG 254
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + AR+ G N+ + CDYS+FDGLL+ QV++ IA+MIN+L GE +++
Sbjct: 255 INPYSMEWSRLAARMKEKG-NDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGEDQLK 311
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
A+R N+LMA R A V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL
Sbjct: 312 NARR-NLLMACCSRLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKL 365
[10][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 182 bits (462), Expect = 2e-44
Identities = 94/175 (53%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RK+ R F I+P+ YNL +R+K F +F+ NRHRL CQVG
Sbjct: 1350 LVGIECPKDEKLPMRKVFDKPKTRCFTILPMEYNLVVRRKFLNFVRFIMANRHRLSCQVG 1409
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + AR+ G N+ + CDYS+FDGLL+ QV++ IA+MIN+L GE +++
Sbjct: 1410 INPYSMEWSRLAARMKEKG-NDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGEDQLK 1466
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
A+R N+LMA R A V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL
Sbjct: 1467 NARR-NLLMACCSRLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKL 1520
[11][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 181 bits (459), Expect = 4e-44
Identities = 98/192 (51%), Positives = 129/192 (67%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
E+V IE PKDE LP RKI + RLF I+PL +NL LR+K F+ LQ +R LP QV
Sbjct: 188 EMVCIETPKDECLPLRKICIKPKTRLFSILPLEFNLLLRKKFLHFSSSLQMHRDTLPTQV 247
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREWG +L RL R ++ AINCDY++FDGLL Q++E I MINK+Y SE
Sbjct: 248 GVNPYSREWGELLQRL-RAQSSVAINCDYASFDGLLTGQILEKIGTMINKMYI---GSEA 303
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ QR N+LM++V R + G +V++V G+PSG ALTV++NS+FNE LIR+ +R
Sbjct: 304 SKIQRLNLLMSIVNRKSICGARVYEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGV 363
Query: 538 EKCRFQQTVCLI 573
+ RF Q V L+
Sbjct: 364 PRERFSQYVTLL 375
[12][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 181 bits (459), Expect = 4e-44
Identities = 98/192 (51%), Positives = 129/192 (67%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
E+V IE PKDE LP RKI + RLF I+PL +NL LR+K F+ LQ +R LP QV
Sbjct: 1575 EMVCIETPKDECLPLRKICIKPKTRLFSILPLEFNLLLRKKFLHFSSSLQMHRDTLPTQV 1634
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREWG +L RL R ++ AINCDY++FDGLL Q++E I MINK+Y SE
Sbjct: 1635 GVNPYSREWGELLQRL-RAQSSVAINCDYASFDGLLTGQILEKIGTMINKMYI---GSEA 1690
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ QR N+LM++V R + G +V++V G+PSG ALTV++NS+FNE LIR+ +R
Sbjct: 1691 SKIQRLNLLMSIVNRKSICGARVYEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGV 1750
Query: 538 EKCRFQQTVCLI 573
+ RF Q V L+
Sbjct: 1751 PRERFSQYVTLL 1762
[13][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 181 bits (458), Expect = 5e-44
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ F+Q NRHRL C VG
Sbjct: 474 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSFMQVNRHRLSCAVG 533
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N IN+LY ++
Sbjct: 534 TNPYSRDWTDIYQRLAEKNS-VAMNCDYSRFDGLLNYQAYVHIVNFINRLY-----NDEH 587
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P
Sbjct: 588 TIVRGNLLMAMYGRWSICGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRVTVPRPL 647
Query: 541 KCRFQQTVCLI 573
F Q VCLI
Sbjct: 648 VNNFNQEVCLI 658
[14][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 179 bits (454), Expect = 1e-43
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ +Q NRHRL C VG
Sbjct: 200 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVG 259
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N INKLY ++
Sbjct: 260 TNPYSRDWTDIYQRLAEKNS-VALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEH 313
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P
Sbjct: 314 SIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPL 373
Query: 541 KCRFQQTVCLI 573
F+Q VCLI
Sbjct: 374 VNNFKQEVCLI 384
[15][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 179 bits (454), Expect = 1e-43
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ +Q NRHRL C VG
Sbjct: 474 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVG 533
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N INKLY ++
Sbjct: 534 TNPYSRDWTDIYQRLAEKNS-VALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEH 587
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P
Sbjct: 588 SIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPL 647
Query: 541 KCRFQQTVCLI 573
F+Q VCLI
Sbjct: 648 VNNFKQEVCLI 658
[16][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 179 bits (454), Expect = 1e-43
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ +Q NRHRL C VG
Sbjct: 474 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVG 533
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N INKLY ++
Sbjct: 534 TNPYSRDWTDIYQRLAEKNS-VALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEH 587
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P
Sbjct: 588 SIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPL 647
Query: 541 KCRFQQTVCLI 573
F+Q VCLI
Sbjct: 648 VNNFKQEVCLI 658
[17][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 179 bits (454), Expect = 1e-43
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ +Q NRHRL C VG
Sbjct: 474 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVG 533
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N INKLY ++
Sbjct: 534 TNPYSRDWTDIYQRLAEKNS-VALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEH 587
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P
Sbjct: 588 SIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPL 647
Query: 541 KCRFQQTVCLI 573
F+Q VCLI
Sbjct: 648 VNNFKQEVCLI 658
[18][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 179 bits (454), Expect = 1e-43
Identities = 94/191 (49%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ +Q NRHRL C VG
Sbjct: 1686 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVG 1745
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N INKLY ++
Sbjct: 1746 TNPYSRDWTDIYQRLAEKNS-VALNCDYSRFDGLLNYQAYVHIVNFINKLY-----NDEH 1799
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P
Sbjct: 1800 SIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPL 1859
Query: 541 KCRFQQTVCLI 573
F+Q VCLI
Sbjct: 1860 VNNFKQEVCLI 1870
[19][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 178 bits (451), Expect = 3e-43
Identities = 95/196 (48%), Positives = 122/196 (62%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI R F I+P+ YNL +R K F +F+ NR +L CQVG
Sbjct: 196 LIGIECPKDEKLPLRKIYDTPKTRCFTILPMEYNLLVRMKFLKFVRFIMRNREKLACQVG 255
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + L+ G N + CDY +FDGLL+ QV+ IA MIN+L G S+
Sbjct: 256 INPYSMEWTRLAGSLLSVGQN-ILCCDYKSFDGLLSKQVMTVIATMINRL---CGGSQES 311
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL----- 525
Q R N+LMA RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+
Sbjct: 312 QTMRMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNN 371
Query: 526 APKPEKCRFQQTVCLI 573
P+P F + V L+
Sbjct: 372 VPRPLHVNFPRMVKLV 387
[20][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 178 bits (451), Expect = 3e-43
Identities = 95/196 (48%), Positives = 122/196 (62%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI R F I+P+ YNL +R K F +F+ NR +L CQVG
Sbjct: 1343 LIGIECPKDEKLPLRKIYDTPKTRCFTILPMEYNLLVRMKFLKFVRFIMRNREKLACQVG 1402
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + L+ G N + CDY +FDGLL+ QV+ IA MIN+L G S+
Sbjct: 1403 INPYSMEWTRLAGSLLSVGQN-ILCCDYKSFDGLLSKQVMTVIATMINRL---CGGSQES 1458
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL----- 525
Q R N+LMA RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+
Sbjct: 1459 QTMRMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNN 1518
Query: 526 APKPEKCRFQQTVCLI 573
P+P F + V L+
Sbjct: 1519 VPRPLHVNFPRMVKLV 1534
[21][TOP]
>UniRef100_Q6A1M4 Polyprotein (Fragment) n=1 Tax=Squash mosaic virus
RepID=Q6A1M4_9SECO
Length = 243
Score = 177 bits (450), Expect = 4e-43
Identities = 94/196 (47%), Positives = 122/196 (62%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RK+ R F I+P+ YNL +R K F +F+ NR +L CQVG
Sbjct: 51 LIGIECPKDEKLPLRKVYDTPKTRCFTILPMEYNLLVRMKFLKFVRFIMRNREKLACQVG 110
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + L+ G N + CDY +FDGLL+ QV+ IA MIN+L G S+
Sbjct: 111 INPYSMEWTRLAGSLLSVGQN-ILCCDYKSFDGLLSKQVMTVIATMINRL---CGGSQES 166
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL----- 525
Q R N+LMA RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+
Sbjct: 167 QTMRMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNN 226
Query: 526 APKPEKCRFQQTVCLI 573
P+P F + V L+
Sbjct: 227 VPRPLHVNFPRMVKLV 242
[22][TOP]
>UniRef100_Q1XEN9 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEN9_9SECO
Length = 239
Score = 176 bits (447), Expect = 9e-43
Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
E++ +E PKDE LP RK+ RLF ++PL YN LR+K F FLQ NR RLPCQV
Sbjct: 51 EIICVETPKDERLPARKVTGKPKTRLFSVLPLSYNFMLRKKFLYFVAFLQKNRGRLPCQV 110
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G N YSREW + RL N A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+
Sbjct: 111 GINAYSREWQTLYNRLAERSEN-ALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQK 166
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ R N+LMA+ R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P
Sbjct: 167 SKNGRKNLLMAICNRKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGV 226
Query: 538 EKCRFQQTVCLI 573
+ F + V L+
Sbjct: 227 PRNHFSEYVTLL 238
[23][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 176 bits (447), Expect = 9e-43
Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
E++ +E PKDE LP RK+ RLF ++PL YN LR+K F FLQ NR RLPCQV
Sbjct: 1392 EIICVETPKDERLPARKVTGKPKTRLFSVLPLSYNFMLRKKFLYFVAFLQKNRGRLPCQV 1451
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G N YSREW + RL N A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+
Sbjct: 1452 GINAYSREWQTLYNRLAERSEN-ALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQK 1507
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ R N+LMA+ R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P
Sbjct: 1508 SKNGRKNLLMAICNRKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGV 1567
Query: 538 EKCRFQQTVCLI 573
+ F + V L+
Sbjct: 1568 PRNHFNEYVTLL 1579
[24][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 175 bits (444), Expect = 2e-42
Identities = 93/196 (47%), Positives = 121/196 (61%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RK+ R F I+P+ YNL +R K F +F+ NR +L CQVG
Sbjct: 1343 LIGIECPKDEKLPLRKVFDTPKTRCFTILPMEYNLLVRMKFLKFVRFIMRNREKLACQVG 1402
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + L+ N + CDY +FDGLL+ QV+ IA MIN+L G S+
Sbjct: 1403 INPYSMEWTRLAGSLLSVSQN-ILCCDYKSFDGLLSKQVMTVIATMINRL---CGGSQES 1458
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL----- 525
Q R N+LMA RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+
Sbjct: 1459 QTMRMNLLMACCSRYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNN 1518
Query: 526 APKPEKCRFQQTVCLI 573
P+P F + V L+
Sbjct: 1519 VPRPLHVNFPRMVKLV 1534
[25][TOP]
>UniRef100_Q1XEN8 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEN8_9SECO
Length = 239
Score = 175 bits (443), Expect = 3e-42
Identities = 90/192 (46%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
E++ +E PKDE LP RK+ RLF +PL YN LR+K F FLQ NR RLPCQV
Sbjct: 51 EIICVETPKDERLPARKVTGKPKTRLFSALPLSYNFMLRKKFLYFVAFLQKNRGRLPCQV 110
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G N YSREW + RL N A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+
Sbjct: 111 GINAYSREWQTLYNRLAERSEN-ALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQK 166
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ R N+LMA+ R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P
Sbjct: 167 SKNGRKNLLMAICNRKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGV 226
Query: 538 EKCRFQQTVCLI 573
+ F + V L+
Sbjct: 227 PRNHFSEYVTLL 238
[26][TOP]
>UniRef100_Q1XEP0 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEP0_9SECO
Length = 239
Score = 174 bits (442), Expect = 3e-42
Identities = 90/192 (46%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
E++ +E PKDE LP RK+ RLF +PL YN LR+K F FLQ NR RLPCQV
Sbjct: 51 EIICVETPKDERLPVRKVTGKPKTRLFSALPLSYNFMLRKKFLYFVAFLQKNRGRLPCQV 110
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G N YSREW + RL N A+NCDYS+FDGL+ Q++ CI +MIN +Y G+S+
Sbjct: 111 GINAYSREWQTLYNRLAERSEN-ALNCDYSSFDGLMTGQMLSCIGDMINTMY---GDSQK 166
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ R N+LMA+ R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P
Sbjct: 167 SKNGRKNLLMAICNRKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGV 226
Query: 538 EKCRFQQTVCLI 573
+ F + V L+
Sbjct: 227 PRNHFSEYVTLL 238
[27][TOP]
>UniRef100_A5A4Z3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cowpea mosaic virus
RepID=A5A4Z3_CPMV
Length = 203
Score = 174 bits (442), Expect = 3e-42
Identities = 89/172 (51%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
Frame = +1
Query: 13 IECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNP 189
++ PKDE LP RK+ R F I+P+ YNL +R+K F +F+ NRHRL CQVG NP
Sbjct: 7 VDFPKDEKLPMRKVFDKPKTRCFTILPMEYNLVVRRKFLNFVRFIMANRHRLSCQVGINP 66
Query: 190 YSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQ 369
YS EW + AR+ G N+ + CDYS+FDGLL+ QV++ IA+MIN+L GE +++ A+
Sbjct: 67 YSMEWSRLAARMKEKG-NDVLCCDYSSFDGLLSKQVMDVIASMINEL--CGGEDQLKNAR 123
Query: 370 RYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R N+LMA R A V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL
Sbjct: 124 R-NLLMACCSRLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKL 174
[28][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 172 bits (437), Expect = 1e-41
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ NR+ LPCQVG
Sbjct: 198 LIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVG 257
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + RL R G N + CDYS+FDGLL+ QV++ +++MIN + G SE
Sbjct: 258 INPYGMEWTDLAMRLKRKGNN-ILCCDYSSFDGLLSKQVMKAMSDMIN---SFCGGSESS 313
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R ++LMA RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ +
Sbjct: 314 KRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAI 368
[29][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 172 bits (437), Expect = 1e-41
Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ NR+ LPCQVG
Sbjct: 1342 LIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVG 1401
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + RL R G N + CDYS+FDGLL+ QV++ +++MIN + G SE
Sbjct: 1402 INPYGMEWTDLAMRLKRKGNN-ILCCDYSSFDGLLSKQVMKAMSDMIN---SFCGGSESS 1457
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R ++LMA RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ +
Sbjct: 1458 KRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAI 1512
[30][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 172 bits (436), Expect = 2e-41
Identities = 90/191 (47%), Positives = 121/191 (63%), Gaps = 1/191 (0%)
Frame = +1
Query: 4 LVVIECPKDELL-PERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ ++ PKDE L P + ++ R F ++P+HYNL LR+ +Q NRHRL C VG
Sbjct: 200 LIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVG 259
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
TNPYSR+W I RL + A+NCDYS FDGLLN Q I N IN+LY ++
Sbjct: 260 TNPYSRDWTDIYQRLAEKNS-VALNCDYSRFDGLLNYQAYVHIVNFINRLY-----NDEH 313
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
R N+LMA+ GR++ GQ+V++V G+PSG ALTV++NS+FNE+LI Y YR P+
Sbjct: 314 STVRGNLLMAMYGRWSVCGQRVYEVRAGMPSGCALTVIINSLFNELLIGYVYRVTVPRSL 373
Query: 541 KCRFQQTVCLI 573
F+Q VCLI
Sbjct: 374 VNNFKQEVCLI 384
[31][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 172 bits (435), Expect = 2e-41
Identities = 89/175 (50%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI + R F ++P+ YNL +R+K F F+ NRHRL CQVG
Sbjct: 194 LVGIECPKDEKLPLRKIYEKPKTRCFTVLPMEYNLVVRRKFLKFVVFIMKNRHRLSCQVG 253
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + L+ G N + CDYS+FDGLL QV+ ++ MIN+L G S ++
Sbjct: 254 INPYGMEWSRLAMSLLEKGNN-ILCCDYSSFDGLLTKQVMHLMSEMINEL--CGGSSRLK 310
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
Q QR N+LMA RYA +V++V CG+PSGF LTV+ NS+FNE+L+RY+Y K+
Sbjct: 311 Q-QRTNLLMACCSRYALCKGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKI 364
[32][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 172 bits (435), Expect = 2e-41
Identities = 87/175 (49%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ NR+ LPCQVG
Sbjct: 1342 LIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVG 1401
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + RL R G N + CDYS+FDGLL+ QV++ +++MIN G SE
Sbjct: 1402 INPYGMEWTDLAMRLKRKGNN-ILCCDYSSFDGLLSKQVMKAMSDMINNF---CGGSESS 1457
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R ++LMA RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ +
Sbjct: 1458 KRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAI 1512
[33][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 172 bits (435), Expect = 2e-41
Identities = 89/175 (50%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI + R F ++P+ YNL +R+K F F+ NRHRL CQVG
Sbjct: 1340 LVGIECPKDEKLPLRKIYEKPKTRCFTVLPMEYNLVVRRKFLKFVVFIMKNRHRLSCQVG 1399
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + L+ G N + CDYS+FDGLL QV+ ++ MIN+L G S ++
Sbjct: 1400 INPYGMEWSRLAMSLLEKGNN-ILCCDYSSFDGLLTKQVMHLMSEMINEL--CGGSSRLK 1456
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
Q QR N+LMA RYA +V++V CG+PSGF LTV+ NS+FNE+L+RY+Y K+
Sbjct: 1457 Q-QRTNLLMACCSRYALCKGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKI 1510
[34][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 171 bits (432), Expect = 5e-41
Identities = 86/175 (49%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ NR+ LPCQVG
Sbjct: 1342 LIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLTFVRFIMRNRNVLPCQVG 1401
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + RL R G N + CDYS+FDGLL+ QV++ +++MIN G +E
Sbjct: 1402 INPYGMEWTDLAMRLKRKGNN-ILCCDYSSFDGLLSKQVMKAMSDMINNF---CGGNESS 1457
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R ++LMA RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ +
Sbjct: 1458 KRKREHLLMACCSRYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAI 1512
[35][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 170 bits (430), Expect = 8e-41
Identities = 88/190 (46%), Positives = 118/190 (62%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
LV IE PKDE L KI+ RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 190 LVSIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVGI 249
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYSREW + RL ++ NCDY FDGL+ Q++ +A MIN + + V
Sbjct: 250 NPYSREWTDLYHRLAEK-SDVGYNCDYKGFDGLITEQILAVVATMINAGF----RNPVSN 304
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
QR N+LMA+ GR + G +V++ G+PSG ALTVV+NS+FNE+L+RY Y+K+ P +
Sbjct: 305 QQRSNLLMAISGRLSICGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYKKIVPPIYR 364
Query: 544 CRFQQTVCLI 573
F + V LI
Sbjct: 365 ECFDRCVVLI 374
[36][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 170 bits (430), Expect = 8e-41
Identities = 88/190 (46%), Positives = 118/190 (62%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
LV IE PKDE L KI+ RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 1649 LVSIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVGI 1708
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYSREW + RL ++ NCDY FDGL+ Q++ +A MIN + + V
Sbjct: 1709 NPYSREWTDLYHRLAEK-SDVGYNCDYKGFDGLITEQILAVVATMINAGF----RNPVSN 1763
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
QR N+LMA+ GR + G +V++ G+PSG ALTVV+NS+FNE+L+RY Y+K+ P +
Sbjct: 1764 QQRSNLLMAISGRLSICGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYKKIVPPIYR 1823
Query: 544 CRFQQTVCLI 573
F + V LI
Sbjct: 1824 ECFDRCVVLI 1833
[37][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 169 bits (427), Expect = 2e-40
Identities = 86/190 (45%), Positives = 118/190 (62%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
L+ IE PKDE L KI+ RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 1651 LISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVGI 1710
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYSREW + RL ++ NCDY FDGL+ Q++ +A MIN Y + V
Sbjct: 1711 NPYSREWTDLYHRLAEQ-SDIGYNCDYKGFDGLITEQILAVVATMINTGY----RNPVSN 1765
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
QR N+L+A+ GR + G +V++ G+PSG ALTVV+NS+FNE+L+RY ++K+ P +
Sbjct: 1766 QQRSNLLLAICGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYR 1825
Query: 544 CRFQQTVCLI 573
F + V LI
Sbjct: 1826 ECFDRCVVLI 1835
[38][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 167 bits (423), Expect = 5e-40
Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ R LPCQVG
Sbjct: 1344 LIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMRRRDILPCQVG 1403
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + ARL G N + CDYS+FDGLL+ QV+ +A+MIN G+S ++
Sbjct: 1404 INPYGMEWTDLAARLKSKGNN-ILCCDYSSFDGLLSKQVMAAMASMINSF--CGGDSSIK 1460
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R N+LMA RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ +
Sbjct: 1461 K-KRENLLMACCSRYAICKSTVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAI 1514
[39][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 166 bits (421), Expect = 9e-40
Identities = 86/178 (48%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ R LPCQVG
Sbjct: 1341 LIGIECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMKRRDILPCQVG 1400
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + ARL G N + CDYS+FDGLL+ QV+ +A+MIN G++ ++
Sbjct: 1401 INPYGMEWTDLAARLKSKGNN-VLCCDYSSFDGLLSKQVMTAMASMINSF--CGGDTSIK 1457
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +R N+LMA RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K
Sbjct: 1458 R-KRENLLMACCSRYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRK 1514
[40][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 166 bits (421), Expect = 9e-40
Identities = 86/178 (48%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ R LPCQVG
Sbjct: 1344 LIGIECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMKRRDILPCQVG 1403
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + ARL G N + CDYS+FDGLL+ QV+ +A+MIN G++ ++
Sbjct: 1404 INPYGMEWTDLAARLKSKGNN-VLCCDYSSFDGLLSKQVMAAMASMINSF--CGGDTSIK 1460
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +R N+LMA RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K
Sbjct: 1461 R-KRENLLMACCSRYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRK 1517
[41][TOP]
>UniRef100_Q6A2S6 Polyprotein (Fragment) n=1 Tax=Cherry leaf roll virus
RepID=Q6A2S6_9SECO
Length = 240
Score = 166 bits (420), Expect = 1e-39
Identities = 89/190 (46%), Positives = 120/190 (63%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
LV +E PKDE L E KI A R F ++P+ YNL LR+ FT FLQ NRHRLPC VG
Sbjct: 55 LVGMEIPKDERLKESKILTPATRTFTVLPMPYNLLLRKFFGRFTAFLQGNRHRLPCAVGV 114
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYS EW I L + + +A+N DY +FDG LN Q+ + IA ++ +++ E
Sbjct: 115 NPYSNEWTRIFDGLAQM-SPKALNGDYKSFDGKLNFQMYDAIARLLGRVH----RDESTS 169
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
RYN++MA+ RY+ G +V++V GLPSG A+TV+++S+FNEILIRYAYR +
Sbjct: 170 QARYNLIMAMYARYSLCGSQVYEVRAGLPSGCAITVIMDSIFNEILIRYAYRVSVGPILR 229
Query: 544 CRFQQTVCLI 573
RF V L+
Sbjct: 230 NRFNHFVKLV 239
[42][TOP]
>UniRef100_Q6A2S5 Polyprotein (Fragment) n=1 Tax=Potato black ringspot virus
RepID=Q6A2S5_9SECO
Length = 252
Score = 166 bits (420), Expect = 1e-39
Identities = 97/201 (48%), Positives = 125/201 (62%), Gaps = 11/201 (5%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI--KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQ 174
E+V IECPKDELL RK+ K+G R FEI+ L N+ R+K ++ FL R LPCQ
Sbjct: 52 EMVCIECPKDELLVPRKVLEKLGT-RNFEILELPKNMLFRKKFLSWASFLSEMRWCLPCQ 110
Query: 175 VGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALS---- 342
VG REWG +L RL + A NCDYS FDGL++ QV++ I M+NK YA +
Sbjct: 111 VGIVVQGREWGLLLDRLSEKNS-VAYNCDYSKFDGLMSCQVLDAIGKMVNKCYANTNPNK 169
Query: 343 -GESEVQ----QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIR 507
G EV Q R+N+LM++ GR +VF+V G+PSG ALTV++NSVFNEILIR
Sbjct: 170 KGRGEVPGSPPQLARHNLLMSIFGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIR 229
Query: 508 YAYRKLAPKPEKCRFQQTVCL 570
Y Y+ + P PE RF+ V L
Sbjct: 230 YVYKTVVPSPEFNRFETFVTL 250
[43][TOP]
>UniRef100_Q6A1Z2 Polyprotein (Fragment) n=1 Tax=Arabis mosaic virus
RepID=Q6A1Z2_ARMV
Length = 236
Score = 166 bits (420), Expect = 1e-39
Identities = 85/190 (44%), Positives = 117/190 (61%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
L+ IE PKDE L KI+ RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 51 LISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVGI 110
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYSREW + RL ++ NCDY FDGL+ Q++ A MIN Y + V
Sbjct: 111 NPYSREWTDLYHRLAEQ-SDIGYNCDYKGFDGLITEQILAVAATMINTGY----RNPVGN 165
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
QR N+L+A+ GR + G +V++ G+PSG ALTVV+NS+FNE+L+RY ++K+ P +
Sbjct: 166 QQRSNLLLAICGRLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYR 225
Query: 544 CRFQQTVCLI 573
F + V L+
Sbjct: 226 ECFDRCVVLV 235
[44][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 166 bits (419), Expect = 2e-39
Identities = 89/190 (46%), Positives = 116/190 (61%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
LV IE PKDE L KI RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 1650 LVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQVGI 1709
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYSREW + RL ++ NCDY AFDGL+ Q++ IA+MIN Y V
Sbjct: 1710 NPYSREWTDLYHRLGEL-SDVGYNCDYKAFDGLITEQILSTIADMINAGY----RDPVGN 1764
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
QR N+L+A+ GR + G +V+ G+PSG ALTVV+NS+F E+L+RY ++K+ P K
Sbjct: 1765 RQRKNLLLAICGRLSICGNQVYATEAGIPSGCALTVVLNSIFKELLMRYCFKKIVPPVYK 1824
Query: 544 CRFQQTVCLI 573
F + V LI
Sbjct: 1825 ECFDRCVVLI 1834
[45][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 165 bits (418), Expect = 2e-39
Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ R LPCQVG
Sbjct: 196 LIGIECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMRRRDILPCQVG 255
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPY EW + ARL G N + CDYS+FDGLL+ QV+ +A+MIN G++ ++
Sbjct: 256 INPYGMEWTDLAARLKSKGNN-ILCCDYSSFDGLLSKQVMAAMASMINSF--CGGDTSIK 312
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R N+LMA RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ +
Sbjct: 313 K-KRENLLMACCSRYAICKSTVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAI 366
[46][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 165 bits (417), Expect = 3e-39
Identities = 86/175 (49%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+P+ YNL +RQK F +F+ R LP QVG
Sbjct: 220 LVAIECPKDEKLPLRKIYTSPKTRCFSILPMEYNLLVRQKFLHFVRFMMKRRDVLPSQVG 279
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EWG I RL G N + CDYS+FDGL+++QV+ CIA+ +N + G+ ++
Sbjct: 280 VNPYSLEWGAIARRLQEVG-NSILCCDYSSFDGLMSSQVMSCIADTMNDF--MGGDVSLK 336
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ QR N+LMA R++ V V++V G+PSGF LTVV+N +FNE+L+RY ++K+
Sbjct: 337 R-QRKNLLMACCSRFSVVKGNVWRVEGGIPSGFPLTVVMNGIFNELLVRYCFKKI 390
[47][TOP]
>UniRef100_Q6A1M5 Polyprotein (Fragment) n=1 Tax=Tobacco ringspot virus
RepID=Q6A1M5_TRSV
Length = 254
Score = 163 bits (413), Expect = 8e-39
Identities = 95/204 (46%), Positives = 127/204 (62%), Gaps = 13/204 (6%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI--KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQ 174
E+V IECPKDELL ERK+ K+G R FEI+ L N+ R+K + FL R LPCQ
Sbjct: 52 EMVCIECPKDELLVERKVLQKLGT-RNFEILELPKNMLFRKKFLHWALFLSDMRWCLPCQ 110
Query: 175 VGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALS---- 342
VG REWG ++ RL + A NCDYS FDGL++ QV++ I M+NK Y+ +
Sbjct: 111 VGIVVQGREWGLLMDRLAAKNS-VAYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNL 169
Query: 343 ---GESEVQ----QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEIL 501
G+ E+ Q R+N+LM++ GR +VF+V G+PSG ALTV++NSVFNEIL
Sbjct: 170 KKKGKGELPGSPPQLARHNLLMSIFGRKCLARSQVFEVRGGIPSGCALTVLLNSVFNEIL 229
Query: 502 IRYAYRKLAPKPEKCRFQQTVCLI 573
IRY Y+ + P PE RF+ V L+
Sbjct: 230 IRYVYKTVIPSPEFNRFETFVTLV 253
[48][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 163 bits (413), Expect = 8e-39
Identities = 84/174 (48%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Frame = +1
Query: 16 ECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
ECPKDE LP RKI + R F I+P+ YNL +R++ F +F+ R LPCQVG NPY
Sbjct: 1 ECPKDEKLPYRKIFEKPKTRCFSILPMEYNLLVRRRFLKFVRFIMKRRDILPCQVGINPY 60
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
EW + ARL G N + CDYS+FDGLL+ QV+ +A+MIN G++ +++ +R
Sbjct: 61 GMEWTDLAARLKSKGNN-VLCCDYSSFDGLLSKQVMTAMASMINSF--CGGDTSIKR-KR 116
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
N+LMA RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K
Sbjct: 117 ENLLMACCSRYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRK 170
[49][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 162 bits (410), Expect = 2e-38
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RK+ R F I+P+ YN+ +RQ F +F+ R LPCQVG
Sbjct: 196 LVGIECPKDEKLPFRKVFTKPKTRNFTILPMEYNILVRQYFLNFVRFIMKKRDVLPCQVG 255
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + +RL G N+ + CDYS+FDGLL+ Q++E +A+MIN+ G +
Sbjct: 256 INPYSMEWSIVASRLKSQG-NDILCCDYSSFDGLLSKQIMEMMADMINRF---CGGGTLI 311
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
A+R N+LMA R A V+++ CG+PSGF LTV+ NS+FNEIL+RY Y+ L
Sbjct: 312 CAKRKNLLMACCSRLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLL 366
[50][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 162 bits (410), Expect = 2e-38
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RK+ R F I+P+ YN+ +RQ F +F+ R LPCQVG
Sbjct: 1347 LVGIECPKDEKLPFRKVFTKPKTRNFTILPMEYNILVRQYFLNFVRFIMKKRDVLPCQVG 1406
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + +RL G N+ + CDYS+FDGLL+ Q++E +A+MIN+ G +
Sbjct: 1407 INPYSMEWSIVASRLKSQG-NDILCCDYSSFDGLLSKQIMEMMADMINRF---CGGGTLI 1462
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
A+R N+LMA R A V+++ CG+PSGF LTV+ NS+FNEIL+RY Y+ L
Sbjct: 1463 CAKRKNLLMACCSRLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLL 1517
[51][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 161 bits (408), Expect = 3e-38
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+P+ +NL +RQK F +F+ R +L CQVG
Sbjct: 1336 LVGIECPKDEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVG 1395
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + RL+ G N+ + CDY++FDGL+ QV+ +A MIN +L G E
Sbjct: 1396 INPYSMEWTGLANRLLSKG-NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKL 1451
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+R ++L+A R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 1452 MRERTHLLLACCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 1506
[52][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 161 bits (408), Expect = 3e-38
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+P+ +NL +RQK F +F+ R +L CQVG
Sbjct: 1336 LVGIECPKDEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVG 1395
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + RL+ G N+ + CDY++FDGL+ QV+ +A MIN +L G E
Sbjct: 1396 INPYSMEWTGLANRLLSKG-NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKL 1451
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+R ++L+A R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 1452 MRERTHLLLACCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 1506
[53][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 161 bits (408), Expect = 3e-38
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+P+ +NL +RQK F +F+ R +L CQVG
Sbjct: 1336 LVGIECPKDEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVG 1395
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + RL+ G N+ + CDY++FDGL+ QV+ +A MIN +L G E
Sbjct: 1396 INPYSMEWTGLANRLLSKG-NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKL 1451
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+R ++L+A R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 1452 MRERTHLLLACCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 1506
[54][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 159 bits (402), Expect = 1e-37
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERK-IKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK IK RLF ++P+ YNL +R+K F +F+ R LPCQV
Sbjct: 194 DLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQV 253
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSR+WG + RL+ G N + CDYS FDG L ++ IA M + + GE+
Sbjct: 254 GINPYSRQWGKVADRLLEKG-NSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGA 309
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
++ Q N+++A RYA G+ +++V G+PSGF LTV+VNS+ NEILI+YAY K
Sbjct: 310 EREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWK 364
[55][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 159 bits (402), Expect = 1e-37
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERK-IKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK IK RLF ++P+ YNL +R+K F +F+ R LPCQV
Sbjct: 1337 DLYCIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQV 1396
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSR+WG + RL+ G N + CDYS FDG L ++ IA M + + GE+
Sbjct: 1397 GINPYSRQWGKVADRLLEKG-NSILCCDYSRFDGFLPKCIMVKIAEMFSNIV---GETGA 1452
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
++ Q N+++A RYA G+ +++V G+PSGF LTV+VNS+ NEILI+YAY K
Sbjct: 1453 EREQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWK 1507
[56][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 159 bits (401), Expect = 2e-37
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+P+ +NL +RQK F +F+ R +L CQVG
Sbjct: 195 LVGIECPKDEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVG 254
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + RL+ G N+ + CDY++F GL+ QV+ +A MIN +L G E
Sbjct: 255 INPYSMEWTGLANRLLSKG-NDILCCDYASFSGLITKQVMSKMAEMIN---SLCGGDEKL 310
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+R ++L+A R A + +++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 311 MRERTHLLLACCSRMAICKKDIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 365
[57][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 159 bits (401), Expect = 2e-37
Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+ + +NL +RQK F +F+ R +L CQVG
Sbjct: 1336 LVGIECPKDEKLPRRKIFDKPKTRCFTILSMEFNLVVRQKFLNFVRFIMKKRDKLSCQVG 1395
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + RL+ G N+ + CDY++FDGL+ QV+ +A MIN +L G E
Sbjct: 1396 INPYSMEWTGLANRLLSKG-NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKL 1451
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+R ++L+A R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 1452 MRERTHLLLACCSRMAICKKNVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 1506
[58][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 159 bits (401), Expect = 2e-37
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IECPKDE LP RKI R F I+P+ +NL +RQK F +F+ R +L CQVG
Sbjct: 1335 LVGIECPKDEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVG 1394
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NPYS EW + RL+ G N+ + CDY++F GL+ QV+ +A MIN +L G E
Sbjct: 1395 INPYSMEWTGLANRLLSKG-NDILCCDYASFSGLITKQVMSKMAEMIN---SLCGGDEKL 1450
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+R ++L+A R A + +++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 1451 MRERTHLLLACCSRMAICKKDIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 1505
[59][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 158 bits (399), Expect = 3e-37
Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ K RLF ++P+ YNL +R+K F +F+ R LPCQV
Sbjct: 1337 DLYCIECVKDERLPIRKVLKEPKSRLFTVLPMSYNLAVRKKFLNFVRFIMKRRDVLPCQV 1396
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSR+WG + RL+ G N + CDYS FDG L ++ IA M + + +GES
Sbjct: 1397 GINPYSRQWGKVADRLLEKG-NSILCCDYSRFDGFLPKCIMVKIAEMFSNVVGETGES-- 1453
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
+ Q N+++A RYA G+ +++V G+PSGF LTV+VNS+ NEILI+YAY K
Sbjct: 1454 -REQTKNLMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWK 1507
[60][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 156 bits (395), Expect = 9e-37
Identities = 80/174 (45%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP+RK+ + RLF ++P+ YNL +R+K F +F T R LPCQV
Sbjct: 158 DLYCIECVKDERLPKRKVLEKPKSRLFTVLPMSYNLVIRKKFLNFVRFFMTRRDVLPCQV 217
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW I +L+ G N + CDYS FDG L ++ I +I + G+++
Sbjct: 218 GVNPYSREWSRIACKLLEKG-NNILCCDYSRFDGFLPKCIMLKIGQLIG---SFMGKNDE 273
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR 519
+ Q N+L+A GRYA + +++V G+PSGF LTV+VNS+ NEIL++YAYR
Sbjct: 274 EVTQICNLLLACTGRYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAYR 327
[61][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 156 bits (395), Expect = 9e-37
Identities = 80/174 (45%), Positives = 112/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP+RK+ + RLF ++P+ YNL +R+K F +F T R LPCQV
Sbjct: 1343 DLYCIECVKDERLPKRKVLEKPKSRLFTVLPMSYNLVIRKKFLNFVRFFMTRRDVLPCQV 1402
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW I +L+ G N + CDYS FDG L ++ I +I + G+++
Sbjct: 1403 GVNPYSREWSRIACKLLEKG-NNILCCDYSRFDGFLPKCIMLKIGQLIG---SFMGKNDE 1458
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR 519
+ Q N+L+A GRYA + +++V G+PSGF LTV+VNS+ NEIL++YAYR
Sbjct: 1459 EVTQICNLLLACTGRYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAYR 1512
[62][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 156 bits (394), Expect = 1e-36
Identities = 94/204 (46%), Positives = 125/204 (61%), Gaps = 13/204 (6%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI--KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQ 174
E+V IECPKDELL ERK+ K+G R FEI+ L N+ R+K + FL R LPCQ
Sbjct: 1682 EMVCIECPKDELLVERKVLQKLGT-RNFEILELPKNMLFRKKFLHWALFLSDMRWCLPCQ 1740
Query: 175 VGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALS---- 342
VG REWG ++ RL + A NCDYS FDGL++ QV++ I M+NK Y+ +
Sbjct: 1741 VGIVVQGREWGLLMDRLAAKNS-VAYNCDYSKFDGLMSCQVLDAIGKMVNKCYSNANPNL 1799
Query: 343 ---GESEVQ----QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEIL 501
G+ E+ Q RYN+LM++ GR +VF+V G+ G ALTV++NSVFNEIL
Sbjct: 1800 KKKGKGELPGSPPQLARYNLLMSIFGRKCLARSQVFEVRGGIRRG-ALTVLLNSVFNEIL 1858
Query: 502 IRYAYRKLAPKPEKCRFQQTVCLI 573
IRY Y+ + P PE RF+ V L+
Sbjct: 1859 IRYVYKTVIPSPEFNRFETFVTLV 1882
[63][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 155 bits (393), Expect = 2e-36
Identities = 81/174 (46%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP+RK+ + RLF ++P+ YNL +R+K F +F T R LPCQV
Sbjct: 1343 DLYCIECVKDERLPKRKVLETPKSRLFTVLPMSYNLVIRKKFLNFVRFFMTRRDVLPCQV 1402
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW I +L+ G N + CDYS FDG L ++ I ++I + E+EV
Sbjct: 1403 GVNPYSREWSRIACKLLEKG-NNILCCDYSRFDGFLPKCIMSQIGHLIG-TFMKKDEAEV 1460
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR 519
+Q N+L+A GRYA + +++V G+PSGF LTV+VNS+ NEIL++YA+R
Sbjct: 1461 EQI--CNLLLACSGRYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAFR 1512
[64][TOP]
>UniRef100_A5A4Z4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Bean pod mottle
virus RepID=A5A4Z4_9SECO
Length = 197
Score = 152 bits (385), Expect = 1e-35
Identities = 80/169 (47%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Frame = +1
Query: 22 PKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSR 198
PKDE LP RKI R F I+P+ +NL +RQK F +F+ R +L CQVG NPYS
Sbjct: 4 PKDEKLPRRKIFDKPKTRCFTILPMEFNLVVRQKFLNFVRFIMKKRDKLSCQVGINPYSM 63
Query: 199 EWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYN 378
EW + RL+ G N+ + CDY++FDGL+ QV+ +A MIN +L G E +R +
Sbjct: 64 EWTGLANRLLSKG-NDILCCDYASFDGLITKQVMSKMAEMIN---SLCGGDEKLMRERTH 119
Query: 379 MLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+L+A R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL
Sbjct: 120 LLLACCSRMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKL 168
[65][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 147 bits (372), Expect = 4e-34
Identities = 78/173 (45%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 1365 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLPAQV 1424
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I NMI +L + EV
Sbjct: 1425 GINPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGNMIARLMKVD---EV 1480
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+AQ N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 1481 SRAQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAY 1533
[66][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 146 bits (368), Expect = 1e-33
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 194 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLPAQV 253
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I NMI +L + EV
Sbjct: 254 GINPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGNMIARLMRVD---EV 309
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 310 SRTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAY 362
[67][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 146 bits (368), Expect = 1e-33
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 1365 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLPAQV 1424
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I NMI +L + EV
Sbjct: 1425 GINPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGNMIARLMRVD---EV 1480
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 1481 SRTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAY 1533
[68][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 146 bits (368), Expect = 1e-33
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 89 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLPAQV 148
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I NMI +L + EV
Sbjct: 149 GINPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGNMIARLLKVD---EV 204
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 205 SRTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAY 257
[69][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 145 bits (366), Expect = 2e-33
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 1365 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLPAQV 1424
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I NMI +L + EV
Sbjct: 1425 GVNPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGNMIARLMKVD---EV 1480
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+AQ N+++A RYA + +++V G+PSGF LTV+ NS+ NEIL++YAY
Sbjct: 1481 SKAQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIGNSILNEILVKYAY 1533
[70][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 145 bits (365), Expect = 3e-33
Identities = 79/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 192 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIAIRKKFLNFVRFFMKRRDVLPAQV 251
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW I +L+ G N + CDYS FDG L V+ I MI ++ S ES
Sbjct: 252 GVNPYSREWTRIANKLLSKG-NNVLCCDYSRFDGFLPKCVMNEIGEMIARVMRASDES-- 308
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTVVVNS+ NEIL++YAY
Sbjct: 309 -RTQIKNLMLACTSRYAMCNRILYRVENGIPSGFPLTVVVNSILNEILVKYAY 360
[71][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 145 bits (365), Expect = 3e-33
Identities = 79/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 1364 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIAIRKKFLNFVRFFMKRRDVLPAQV 1423
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW I +L+ G N + CDYS FDG L V+ I MI ++ S ES
Sbjct: 1424 GVNPYSREWTRIANKLLSKG-NNVLCCDYSRFDGFLPKCVMNEIGEMIARVMRASDES-- 1480
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTVVVNS+ NEIL++YAY
Sbjct: 1481 -RTQIKNLMLACTSRYAMCNRILYRVENGIPSGFPLTVVVNSILNEILVKYAY 1532
[72][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 144 bits (364), Expect = 4e-33
Identities = 77/173 (44%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 1264 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLPAQV 1323
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I +MI KL EV
Sbjct: 1324 GINPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGDMIAKLMKAD---EV 1379
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 1380 SKTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAY 1432
[73][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 144 bits (362), Expect = 6e-33
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R LP QV
Sbjct: 1364 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIAIRKKFLNFVRFFMKRRDVLPAQV 1423
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW I +L+ G N + CDYS FDG L V+ I +MI ++ + ES+
Sbjct: 1424 GVNPYSREWTRIANKLLSKG-NNILCCDYSRFDGFLPKCVMNEIGDMIARVMRANDESKT 1482
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
Q N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 1483 QIK---NLMLACTSRYAMCNRILYRVENGIPSGFPLTVIVNSILNEILVKYAY 1532
[74][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 142 bits (358), Expect = 2e-32
Identities = 76/173 (43%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L IEC KDE LP RK+ RLF ++P+ YN+ +R+K F +F R L QV
Sbjct: 1365 DLYCIECVKDERLPIRKVLHEPKSRLFTVLPMSYNIVIRKKFLNFVRFFMKRRDVLTAQV 1424
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NPYSREW + +L+ G N + CDYS FDG L ++ I NMI +L EV
Sbjct: 1425 GINPYSREWTRMANKLLSKGNN-ILCCDYSRFDGFLPKCIMNEIGNMIARLMKTD---EV 1480
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ Q N+++A RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY
Sbjct: 1481 SRTQIKNLMLACTSRYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAY 1533
[75][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 141 bits (356), Expect = 3e-32
Identities = 79/180 (43%), Positives = 108/180 (60%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
+EC KDE L +RK V RLF++MP +N+ LR+ F+ F+Q NR L VGTNPY
Sbjct: 1633 VECLKDECLKKRK--VATPRLFDVMPFEHNILLREYFLNFSAFIQANRIYLSACVGTNPY 1690
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
SREW + RL ++ +NCDYS FDGL++ Q+ + Q +
Sbjct: 1691 SREWTTLYDRLAEY-SDTGLNCDYSKFDGLISHQISR---GWLQPSTVFLETVRKQILRV 1746
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRF 552
N+L+ +GR + G++V+ V G+PSG ALTVV+NS+FNEILIRY YRK+ P P C F
Sbjct: 1747 GNLLLMFIGRRSICGRQVYMVRGGMPSGCALTVVINSIFNEILIRYVYRKVTPAP-ACNF 1805
[76][TOP]
>UniRef100_Q20LA1 Polyprotein 1 (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q20LA1_9SECO
Length = 533
Score = 141 bits (355), Expect = 4e-32
Identities = 79/195 (40%), Positives = 112/195 (57%), Gaps = 4/195 (2%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK----VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLP 168
+L+V EC KDELL E K+ + RLF I P YN+ +RQ + ++ R L
Sbjct: 327 QLIVKECAKDELLKEGKVLPSEGMPGTRLFSICPAWYNMVVRQHFVYLAESVRKRRRTLS 386
Query: 169 CQVGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGE 348
QVG SREW + ARL ++ CDYS FDGL+ Q++ I + +++ SG+
Sbjct: 387 SQVGIVVGSREWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITGIYERMF--SGK 444
Query: 349 SEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+ Q R N++M + R + G +V++V G+PSGFALTV NS+FNEIL+R AYR L
Sbjct: 445 DGMSQF-RQNLMMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLV 503
Query: 529 PKPEKCRFQQTVCLI 573
P+ E+ F V LI
Sbjct: 504 PEIERPFFSNNVALI 518
[77][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 139 bits (350), Expect = 2e-31
Identities = 79/195 (40%), Positives = 111/195 (56%), Gaps = 4/195 (2%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK----VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLP 168
+L++ E KDELL E K+ + RLF I P YN+ +RQ + ++ R L
Sbjct: 1748 QLIIKESAKDELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYIAESVRKRRRTLS 1807
Query: 169 CQVGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGE 348
QVG SREW + ARL ++ CDYS FDGL+ Q++ I N+ +++ SG
Sbjct: 1808 SQVGIVVGSREWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITNIYERMF--SGN 1865
Query: 349 SEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+ Q R N+LM + R + G +V++V G+PSGFALTV NS+FNEIL+R AYR L
Sbjct: 1866 DGMSQF-RQNLLMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLV 1924
Query: 529 PKPEKCRFQQTVCLI 573
P+ E+ F V LI
Sbjct: 1925 PEIERPFFSNNVVLI 1939
[78][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 136 bits (343), Expect = 1e-30
Identities = 79/195 (40%), Positives = 110/195 (56%), Gaps = 4/195 (2%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK----VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLP 168
+L+V E KDELL E K+ + RLF I P YN+ +RQ + ++ R L
Sbjct: 1747 QLIVKESAKDELLKEGKVLPSEGMPGTRLFSICPAWYNIVVRQHFVYVAESVRKRRRTLS 1806
Query: 169 CQVGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGE 348
QVG SREW + ARL ++ CDYS FDGL+ Q++ I + +++ SG+
Sbjct: 1807 SQVGIVVGSREWDDLAARLRSKKNDKMYCCDYSKFDGLMTPQIVHAITGIYERMF--SGK 1864
Query: 349 SEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+ Q R N+LM + R + G +V++V G+PSGFALTV NS+FNEIL+R AYR L
Sbjct: 1865 DGMSQF-RQNLLMGICNRISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLV 1923
Query: 529 PKPEKCRFQQTVCLI 573
P E+ F V LI
Sbjct: 1924 PDIERPFFSNNVVLI 1938
[79][TOP]
>UniRef100_UPI0000164A2C RNA-dependent RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=UPI0000164A2C
Length = 335
Score = 130 bits (327), Expect = 7e-29
Identities = 70/151 (46%), Positives = 89/151 (58%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
LV IE PKDE L KI RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 190 LVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQVGI 249
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NPYSREW + RL ++ NCDY AFDGL+ Q++ IA+MIN Y V
Sbjct: 250 NPYSREWTDLYHRLGEL-SDVGYNCDYKAFDGLITEQILSTIADMINAGY----RDPVGN 304
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSG 456
QR N+L+A+ GR + G +V+ G+PSG
Sbjct: 305 RQRKNLLLAICGRLSICGNQVYATEAGIPSG 335
[80][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 124 bits (310), Expect = 7e-27
Identities = 63/142 (44%), Positives = 89/142 (62%)
Frame = +1
Query: 91 LHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEAINCDYSA 270
+ YN+ +R+K F +F R LP QVG NPYSREW + +L+ G N + CDYS
Sbjct: 1 MSYNIVIRKKFLNFVRFFMKRRDVLPAQVGINPYSREWTRMANKLLSKGNN-ILCCDYSR 59
Query: 271 FDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLP 450
FDG L ++ I NMI +L + EV +AQ N+++A RYA + +++V G+P
Sbjct: 60 FDGFLPKCIMNEIGNMIARLMKVD---EVSKAQIKNLMLACTSRYAMCNRVLYRVENGIP 116
Query: 451 SGFALTVVVNSVFNEILIRYAY 516
SGF LTV+VNS+ NEIL++YAY
Sbjct: 117 SGFPLTVIVNSILNEILVKYAY 138
[81][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 123 bits (309), Expect = 9e-27
Identities = 66/177 (37%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ +ECPKDE + +K+ RLF ++P YNL +R+ F + P +VG
Sbjct: 294 LIGVECPKDERVARKKVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVG 353
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L GTN N D+ FDG+ V+ + INKLY G+++
Sbjct: 354 INPQSIEWTNLYENLRSKGTNW-FNGDFERFDGITPRDVMVQLVIRINKLYK-RGDADRP 411
Query: 361 QAQRYNMLMALVG--RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
A + L+ L+ RYA G+ ++KV+CG+PSGF+LTV+VNS+ NE +R+A++++
Sbjct: 412 LANKVRSLLMLMASDRYAIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRI 468
[82][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 119 bits (298), Expect = 2e-25
Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+L +C KDE LP KI RLFEI+P HYN+ +R+ F+ L ++ + +PC+V
Sbjct: 1299 DLFTTQCAKDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLDFSATLMSSHNAIPCKV 1358
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P S EW +LA R +N + DYS+FDG + + ++++ Y + S
Sbjct: 1359 GIDPTSSEWS-LLANGFRAVSNIGFSADYSSFDGRAPVFIFQWFCDLVDDYYGSATGSPE 1417
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
A R+ +LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 1418 SNA-RHALLMMASCHYTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 1476
[83][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 116 bits (291), Expect = 1e-24
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
ELV +C KDE LP K+ RLFEI+P HYN+ +R+ F+ L + + LPC+V
Sbjct: 1296 ELVTTQCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNALPCKV 1355
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NP EW +LA R ++ + DYS+FDG + ++++ Y S
Sbjct: 1356 GINPGGIEWT-LLANGFRAVSDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPD 1414
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
A R+ +LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 1415 SNA-RHVLLMMASCHYTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 1473
[84][TOP]
>UniRef100_B1PM64 Polyprotein (Fragment) n=1 Tax=Tomato torrado virus
RepID=B1PM64_9SECO
Length = 910
Score = 116 bits (291), Expect = 1e-24
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
ELV +C KDE LP K+ RLFEI+P HYN+ +R+ F+ L + + LPC+V
Sbjct: 48 ELVATQCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNALPCKV 107
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NP EW +LA R ++ + DYS+FDG + ++++ Y S
Sbjct: 108 GINPGGIEWT-LLANGFRAVSDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPD 166
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
A R+ +LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 167 SNA-RHVLLMMASCHYTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 225
[85][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 116 bits (291), Expect = 1e-24
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
ELV +C KDE LP K+ RLFEI+P HYN+ +R+ F+ L + + LPC+V
Sbjct: 1296 ELVTTQCAKDERLPLEKVFGKRKTRLFEILPFHYNMLVRKYFLDFSASLMASHNALPCKV 1355
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NP EW +LA R ++ + DYS+FDG + ++++ Y S
Sbjct: 1356 GINPGGIEWT-LLANGFRAVSDTGFSADYSSFDGRAPIFAFQWFCDLVDDYYGSPPGSPD 1414
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
A R+ +LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 1415 SNA-RHVLLMMASCHYTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 1473
[86][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
Length = 2151
Score = 115 bits (289), Expect = 2e-24
Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+LV +C KDE LP KI RLFEI+P HYN+ +R+ F+ L + +PC+V
Sbjct: 1297 DLVTTQCAKDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLDFSATLMALHNAIPCKV 1356
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P S EW +LA R ++ + DYS+FDG + +++++ Y S
Sbjct: 1357 GIDPTSSEWT-LLANGFRAVSDVGFSADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPD 1415
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
A R+ +LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 1416 SNA-RHALLMMASCHYTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 1474
[87][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
RepID=A0N0G3_9VIRU
Length = 1943
Score = 115 bits (289), Expect = 2e-24
Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+LV +C KDE LP KI RLFEI+P HYN+ +R+ F+ L + +PC+V
Sbjct: 1089 DLVTTQCAKDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLDFSATLMALHNAIPCKV 1148
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P S EW +LA R ++ + DYS+FDG + +++++ Y S
Sbjct: 1149 GIDPTSSEWT-LLANGFRAVSDVGFSADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPD 1207
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
A R+ +LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 1208 SNA-RHALLMMASCHYTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 1266
[88][TOP]
>UniRef100_Q6A2S7 Polyprotein (Fragment) n=1 Tax=Arracacha virus B RepID=Q6A2S7_9SECO
Length = 251
Score = 114 bits (285), Expect = 5e-24
Identities = 69/188 (36%), Positives = 103/188 (54%), Gaps = 8/188 (4%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNP 189
I+ PKDE + K++V RLF I+P HYNL +R+ F L + P +VG N
Sbjct: 55 IDFPKDEKVMRAKVEVKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNT 114
Query: 190 YSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY------ALSGES 351
S EW H+ +L G N N DYS FDG+ V++ +A I+K Y L +
Sbjct: 115 SSLEWQHLYDQLSAVGFNW-FNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVPKK 173
Query: 352 EVQQAQRYNMLMALVG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+++ + +++L+ + RY G V+KV+ G+PSGF LTV+VNS+ N + +AYRKL
Sbjct: 174 KIRTSVAHSLLLDMANSRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLM 233
Query: 529 PKPEKCRF 552
+ K F
Sbjct: 234 SQSLKSHF 241
[89][TOP]
>UniRef100_UPI0001765C94 RNA-dependent RNA polymerase n=1 Tax=Tomato marchitez virus
RepID=UPI0001765C94
Length = 249
Score = 108 bits (270), Expect = 3e-22
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 1/172 (0%)
Frame = +1
Query: 25 KDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSRE 201
KDE LP KI RLFEI+P HYN+ +R+ F+ L + +PC+VG +P S E
Sbjct: 1 KDERLPLEKIYGKRKTRLFEILPFHYNMLVRKYFLDFSATLMALHNAIPCKVGIDPTSSE 60
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +LA R ++ + DYS+FDG + +++++ Y S A R+ +
Sbjct: 61 WT-LLANGFRAVSDVGFSADYSSFDGRAPVFAFQWFCDLVDEYYGSKPGSPDSNA-RHAL 118
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
LM Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P
Sbjct: 119 LMMASCHYTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRP 170
[90][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
RepID=UPI0000164A61
Length = 694
Score = 107 bits (268), Expect = 5e-22
Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ I C KDE ++++ V R+FEI+P HYN+ +R+ F QF+ + LPC+VG
Sbjct: 199 IITIACAKDEKTKMKRVREVPKTRIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVG 258
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
N YS+ W + A R + N DY+ FD ++ IA+M++ L+G+
Sbjct: 259 LNVYSKSWDTMHAEHNRFAYH--FNGDYTGFDTATPRVLMMKIADMVSN---LAGDGREN 313
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R N++ V R V + +++V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 314 AIVRRNLMKMAVERRILVLRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKI 368
[91][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
Length = 1915
Score = 107 bits (268), Expect = 5e-22
Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ I C KDE ++++ V R+FEI+P HYN+ +R+ F QF+ + LPC+VG
Sbjct: 1420 IITIACAKDEKTKMKRVREVPKTRIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVG 1479
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
N YS+ W + A R + N DY+ FD ++ IA+M++ L+G+
Sbjct: 1480 LNVYSKSWDTMHAEHNRFAYH--FNGDYTGFDTATPRVLMMKIADMVSN---LAGDGREN 1534
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R N++ V R V + +++V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 1535 AIVRRNLMKMAVERRILVLRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKI 1589
[92][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
Length = 2163
Score = 107 bits (266), Expect = 9e-22
Identities = 65/194 (33%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+++ I C KDE K+ + R+FEI+P HYN+ +R+ F QF+ + LPC+V
Sbjct: 1480 KIITIACAKDEKTKLIKVYEKPKTRIFEILPYHYNILVRKYYLFFMQFIMRMHNVLPCKV 1539
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NP+S++W + A R N DYS FD Q++ A++I++L A +
Sbjct: 1540 GLNPFSQDWDEMHAEHTR--FEHHFNGDYSGFDTGTPRQLLLKFADLISELAA---DGRR 1594
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK----L 525
+ R N++ V R V +++ V G PSGFALTV++NS+ N+ + +A+RK +
Sbjct: 1595 NKVIRRNLMQLAVDRRILVLAELYHVRGGTPSGFALTVIINSMVNQFYLMWAWRKIMSRI 1654
Query: 526 APKPEKCRFQQTVC 567
+P R +T C
Sbjct: 1655 SPSMVTYRVMRTHC 1668
[93][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
Length = 2235
Score = 102 bits (255), Expect = 2e-20
Identities = 62/188 (32%), Positives = 95/188 (50%), Gaps = 9/188 (4%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ I+ PKDE + K+ + RLF I+P+ YN+ +R+ +F + T + +P +VG
Sbjct: 1720 LIGIDFPKDEKVDSSKVYIKPKTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVG 1779
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY-------AL 339
+ S EW + +L GTN N DYS FDG+ V++ I INK Y
Sbjct: 1780 IDCLSNEWSILYHQLRSKGTN-WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAIT 1838
Query: 340 SGESEVQQAQRYNMLMALVG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ ++LM + RY ++ V G+PSGF LTV+VNS+ N I ++Y
Sbjct: 1839 DSNLSINSDLARSLLMDMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSY 1898
Query: 517 RKLAPKPE 540
KL + E
Sbjct: 1899 IKLMKREE 1906
[94][TOP]
>UniRef100_UPI0000163DC1 RNA-dependent RNA polymerase n=1 Tax=Maize chlorotic dwarf virus
RepID=UPI0000163DC1
Length = 612
Score = 102 bits (254), Expect = 2e-20
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
+V +ECPKDE KI + A R F I+P N+ RQ F + TNR +L CQVG
Sbjct: 213 VVTVECPKDERRKLSKIYEQPATRTFTILPPEINILFRQYFGDFAAMIMTNRSKLFCQVG 272
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP + EW ++ + T+ DYS FDG+ + Q+ I ++N Y + E
Sbjct: 273 INPENMEWSDLMHEFLHKSTH-GFAGDYSKFDGIGDPQIYHSITQVVNNWY---DDGEEN 328
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R+ ++ +++ R V + +F+ G+PSGFA+TV+ NS N + A+ L
Sbjct: 329 ARTRHALISSIIHREGIVKEYLFQYCQGMPSGFAMTVIFNSFVNYYYLAMAWMNL 383
[95][TOP]
>UniRef100_O11979 Polyprotein n=2 Tax=Maize chlorotic dwarf virus RepID=O11979_9SECO
Length = 3443
Score = 102 bits (254), Expect = 2e-20
Identities = 59/175 (33%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
+V +ECPKDE KI + A R F I+P N+ RQ F + TNR +L CQVG
Sbjct: 3044 VVTVECPKDERRKLSKIYEQPATRTFTILPPEINILFRQYFGDFAAMIMTNRSKLFCQVG 3103
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP + EW ++ + T+ DYS FDG+ + Q+ I ++N Y + E
Sbjct: 3104 INPENMEWSDLMHEFLHKSTH-GFAGDYSKFDGIGDPQIYHSITQVVNNWY---DDGEEN 3159
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R+ ++ +++ R V + +F+ G+PSGFA+TV+ NS N + A+ L
Sbjct: 3160 ARTRHALISSIIHREGIVKEYLFQYCQGMPSGFAMTVIFNSFVNYYYLAMAWMNL 3214
[96][TOP]
>UniRef100_B1A455 Replication-associated polyprotein (Fragment) n=1 Tax=Black raspberry
necrosis virus RepID=B1A455_9SECO
Length = 983
Score = 102 bits (253), Expect = 3e-20
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 1/176 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQV 177
+++ I C KDE K+ + R+FEI+P HYN+ +R+ F QF+ + LPC+V
Sbjct: 739 KIITIACAKDEKTKLVKVYEKPKTRIFEILPYHYNILVRKYYLFFMQFIMRMHNVLPCKV 798
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G NP+S++W + A + N DYS FD Q+ +++I+ L A +
Sbjct: 799 GLNPFSQDWDEMHAEHSK--FEHHFNGDYSGFDTGTPRQLSLKFSDLISDLAA---DGRR 853
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ R N++ V R V +++ V G PSGFALTV++NS+ N+ + +A+RK+
Sbjct: 854 NKVIRRNLMQLAVDRRILVLSELYHVRGGTPSGFALTVIINSMVNQFYLMWAWRKI 909
[97][TOP]
>UniRef100_Q80G77 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G77_9SECO
Length = 182
Score = 99.4 bits (246), Expect = 2e-19
Identities = 56/157 (35%), Positives = 89/157 (56%)
Frame = +1
Query: 55 KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRP 234
+V R+FEI+P HYN+ +R+ F QF+ + LPC+VG N YS+ W + A R
Sbjct: 8 EVPKTRIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVGLNVYSKSWDTMHAEHNRF 67
Query: 235 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 414
+ N DY+ FD ++ IA+M++ L+G+ R N++ V R V
Sbjct: 68 AYH--FNGDYTGFDTATPRVLMMKIADMVSN---LAGDGRENAIVRRNLMKMAVERRILV 122
Query: 415 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +++V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 123 LRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[98][TOP]
>UniRef100_Q6EEL1 Polyprotein n=1 Tax=Maize chlorotic dwarf virus RepID=Q6EEL1_9SECO
Length = 3457
Score = 99.4 bits (246), Expect = 2e-19
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ IEC KDE KI + A R F I+P N+ RQ F + T R +L CQVG
Sbjct: 3058 VITIECAKDERRKLNKIYEKPATRTFTILPPEINILFRQYFGDFAAMVMTCRAKLFCQVG 3117
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EWG ++ L T + DYS FDG+ + Q+ I ++N Y + E
Sbjct: 3118 INPESMEWGDLMLGLKEKST-KGFAGDYSKFDGIGDPQIYHSITQVVNNWY---NDGEEN 3173
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R+ ++ +++ R V + +F+ G+PSGFA+TV+ NS N + A+ L
Sbjct: 3174 ATIRHALISSIIHRRGIVKEYLFQYCQGMPSGFAMTVIFNSFMNYYYLSLAWMNL 3228
[99][TOP]
>UniRef100_Q5MH31 Polyprotein n=1 Tax=Maize chlorotic dwarf virus RepID=Q5MH31_9SECO
Length = 3481
Score = 99.4 bits (246), Expect = 2e-19
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVG-ACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
+V +ECPKDE KI A R F I+P N+ RQ F + TNR +L CQVG
Sbjct: 3082 VVTVECPKDERRKLNKIYDNPATRTFTILPPEINILFRQYFGDFAAMVMTNRAKLFCQVG 3141
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP + EW ++ + +++ DYS FDG+ + Q+ I ++N Y + E
Sbjct: 3142 INPENMEWSDLMHGFLSK-SSKGFAGDYSKFDGIGDPQIYHSITQVVNNWY---NDGEEN 3197
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
R+ ++ +++ R V + +F+ G+PSGFA+TV+ NS N + A+ L
Sbjct: 3198 ARTRHALISSIIHREGIVKEYLFQYCQGMPSGFAMTVIFNSFVNYYYLAMAWMNL 3252
[100][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
RepID=UPI000043F357
Length = 707
Score = 99.0 bits (245), Expect = 2e-19
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ I+ PKDE + K+ + RLF I+P+ YN+ +R+ + + T + +P +VG
Sbjct: 192 LIGIDFPKDEKVDSSKVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVG 251
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYA-------- 336
+ S EW + +L GTN N DYS FDG+ V++ I INK Y
Sbjct: 252 IDCLSNEWSILYHQLRSKGTNW-FNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAIT 310
Query: 337 ---LSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIR 507
LS S++ ++ +M RY ++ V G+PSGF LTV+VNS+ N I
Sbjct: 311 DSNLSINSDLARSLLTDMAST---RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIH 367
Query: 508 YAYRKLAPKPE 540
++Y KL + E
Sbjct: 368 FSYIKLMKREE 378
[101][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling
virus RepID=Q9YZ97_SDV
Length = 872
Score = 99.0 bits (245), Expect = 2e-19
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 1/170 (0%)
Frame = +1
Query: 19 CPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYS 195
C KDE K++V R+FEI+P N+ +R+ + Q L +LP +VG N YS
Sbjct: 396 CAKDEKTTSHKVRVEPKTRIFEILPFQINIIIRRYFMFWMQLLMAAHDQLPSKVGLNVYS 455
Query: 196 REWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRY 375
W +L R R + DYS FD ++ I + IN+L +G+SE+ Q R
Sbjct: 456 ESWDILLGRHTRLANH--FTGDYSGFDTSTPRILVYAIVDKINEL---AGDSEMNQRTRR 510
Query: 376 NMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
N++ ++ RY V++++ G PSGFA TV++NS+ NE +++++ L
Sbjct: 511 NIIRFVLNRYLISDGYVYEIHGGTPSGFAPTVMINSIVNEFYLKWSWMGL 560
[102][TOP]
>UniRef100_Q80G75 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G75_9SECO
Length = 182
Score = 99.0 bits (245), Expect = 2e-19
Identities = 55/152 (36%), Positives = 87/152 (57%)
Frame = +1
Query: 70 RLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEA 249
R+FEI+P HYN+ +R+ F QF+ + LPC+VG N YS+ W + A R +
Sbjct: 13 RIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVGLNVYSKSWDTMHAEHNRFAYH-- 70
Query: 250 INCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVF 429
N DY+ FD ++ IA+M++ L+G+ R N++ V R V + ++
Sbjct: 71 FNGDYTGFDTATPRVLMMKIADMVSN---LAGDGRENAIVRRNLMKMAVKRRILVLRDLY 127
Query: 430 KVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 128 QVKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[103][TOP]
>UniRef100_Q80G71 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G71_9SECO
Length = 182
Score = 99.0 bits (245), Expect = 2e-19
Identities = 56/160 (35%), Positives = 91/160 (56%)
Frame = +1
Query: 55 KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRP 234
+V R+FEI+P HYN+ +R+ F QF+ + LPC+VG N YS+ W + A R
Sbjct: 8 EVPKTRIFEILPFHYNILVRKYYLFFMQFIMSLHDSLPCKVGLNVYSKSWDTMHAEHNRF 67
Query: 235 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 414
+ N DY+ FD ++ IA+M+++L E+ + R N++ V R V
Sbjct: 68 AYH--FNGDYTGFDTATPRVLMMRIADMVSELACDGRENAI---VRRNLMRMAVERRILV 122
Query: 415 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +++V G PSGFALTV++NSV N+ + +A+RK+ +
Sbjct: 123 LRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKITSR 162
[104][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
Length = 2250
Score = 99.0 bits (245), Expect = 2e-19
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ I+ PKDE + K+ + RLF I+P+ YN+ +R+ + + T + +P +VG
Sbjct: 1735 LIGIDFPKDEKVDSSKVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVG 1794
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYA-------- 336
+ S EW + +L GTN N DYS FDG+ V++ I INK Y
Sbjct: 1795 IDCLSNEWSILYHQLRSKGTNW-FNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAIT 1853
Query: 337 ---LSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIR 507
LS S++ ++ +M RY ++ V G+PSGF LTV+VNS+ N I
Sbjct: 1854 DSNLSINSDLARSLLTDMAST---RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIH 1910
Query: 508 YAYRKLAPKPE 540
++Y KL + E
Sbjct: 1911 FSYIKLMKREE 1921
[105][TOP]
>UniRef100_UPI00004FF342 polymerase n=1 Tax=Strawberry latent ringspot virus
RepID=UPI00004FF342
Length = 675
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
+V ++ KDE LP KI RLF I+P+ YN +R+ +F L + +P +VG
Sbjct: 195 IVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVG 254
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP +W + ++ GTN N DYS FDG+ ++ I+N I KLY +
Sbjct: 255 INPLGYDWTILGKKMHAKGTNW-FNGDYSRFDGVTPRCLLIEISNRITKLYG-----DEH 308
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R ++++A R G +++V+ G+P GFALTV+VNS+ N L+R+++ +
Sbjct: 309 RERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHM 363
[106][TOP]
>UniRef100_Q5G2U4 250 kDa polyprotein n=1 Tax=Strawberry latent ringspot virus
RepID=Q5G2U4_9SECO
Length = 2227
Score = 98.6 bits (244), Expect = 3e-19
Identities = 59/175 (33%), Positives = 97/175 (55%), Gaps = 1/175 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
+V ++ KDE LP KI RLF I+P+ YN +R+ +F L + +P +VG
Sbjct: 1747 IVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNCIPTKVG 1806
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP +W + ++ GTN N DYS FDG+ ++ I+N I KLY +
Sbjct: 1807 INPLGYDWTILGKKMHAKGTNW-FNGDYSRFDGVTPRCLLIEISNRITKLYG-----DEH 1860
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +R ++++A R G +++V+ G+P GFALTV+VNS+ N L+R+++ +
Sbjct: 1861 RERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHM 1915
[107][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 98.2 bits (243), Expect = 4e-19
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ I+ PKDE + K+ + RLF I+P+ YN+ +R+ +F L + +P +VG
Sbjct: 192 VIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVG 251
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
+P S EW + L GTN N DYS FDG+ V++ I I++ YA +
Sbjct: 252 IDPISNEWSILCHSLHSKGTN-WFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAIT 310
Query: 361 QAQ-------RYNMLMALVG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
++LM + RY ++ V G+PSGF LTV+VNS+ N + +AY
Sbjct: 311 DPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAY 370
Query: 517 RKL 525
KL
Sbjct: 371 MKL 373
[108][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 98.2 bits (243), Expect = 4e-19
Identities = 60/183 (32%), Positives = 93/183 (50%), Gaps = 9/183 (4%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ I+ PKDE + K+ + RLF I+P+ YN+ +R+ +F L + +P +VG
Sbjct: 1562 VIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVPTKVG 1621
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
+P S EW + L GTN N DYS FDG+ V++ I I++ YA +
Sbjct: 1622 IDPISNEWSILCHSLHSKGTN-WFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSFAIT 1680
Query: 361 QAQ-------RYNMLMALVG-RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
++LM + RY ++ V G+PSGF LTV+VNS+ N + +AY
Sbjct: 1681 DPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAY 1740
Query: 517 RKL 525
KL
Sbjct: 1741 MKL 1743
[109][TOP]
>UniRef100_Q80G72 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G72_9SECO
Length = 182
Score = 98.2 bits (243), Expect = 4e-19
Identities = 55/157 (35%), Positives = 90/157 (57%)
Frame = +1
Query: 55 KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRP 234
+V R+FEI+P HYN+ +R+ F QF+ + LPC+VG N YS+ W + A R
Sbjct: 8 EVPKTRIFEILPFHYNILVRKYYLFFMQFVMSLHDFLPCKVGLNVYSKSWDTMHAEHNRF 67
Query: 235 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 414
+ N DY+ FD ++ IA+M+++ L+G+ R N++ V R V
Sbjct: 68 AYH--FNGDYTGFDTATPRVLMMRIADMVSE---LAGDGRENAIVRRNLMKMAVERRILV 122
Query: 415 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +++V G PSGFALTV++NSV N+ + +A+R++
Sbjct: 123 LRDLYQVRGGTPSGFALTVIINSVVNQFYLMWAWRRI 159
[110][TOP]
>UniRef100_B6UIR8 Polyprotein n=1 Tax=Carrot necrotic dieback virus RepID=B6UIR8_9SECO
Length = 3015
Score = 97.4 bits (241), Expect = 7e-19
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE KI RLF I+P+ +N+ R+ F F+ NRH+ VG
Sbjct: 2428 LISIECPKDERRALDKIYDKPKTRLFSILPVEFNMHARRLFLDFNVFVMANRHKRGIMVG 2487
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+SREW LA + + N D++ FDG+ + + +A + N Y Q
Sbjct: 2488 INPHSREWSD-LAISLASFSPYGFNGDFANFDGMFHPTSFDMVAELANIFY-----GGFQ 2541
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+R ++ AL R++ V V +++ G PSGF +TV+ NS N ++ A+ LA
Sbjct: 2542 SDERTSLTKALTNRFSLVKGGVLRISGGGPSGFPMTVIFNSFINLFYLQSAWIMLA 2597
[111][TOP]
>UniRef100_Q80G70 RNA dependent RNA polymerase (Fragment) n=1 Tax=Strawberry mottle
virus RepID=Q80G70_9SECO
Length = 182
Score = 97.1 bits (240), Expect = 9e-19
Identities = 56/157 (35%), Positives = 89/157 (56%)
Frame = +1
Query: 55 KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRP 234
+V R+FEI+P HYN+ +R+ F QF+ + LPC+VG N YS+ W + A R
Sbjct: 8 EVPKTRIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVGLNVYSKSWDTMHAEHNRF 67
Query: 235 GTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFV 414
+ N DY+ FD ++ IA+M++ L E+ + R N++ V R V
Sbjct: 68 AYH--FNGDYTGFDTATPRVLMMRIADMVSDLACDGRENAI---VRRNLMRMAVERRILV 122
Query: 415 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+ +++V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 123 LRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[112][TOP]
>UniRef100_Q80G73 RNA dependent RNA polymerase (Fragment) n=3 Tax=Strawberry mottle
virus RepID=Q80G73_9SECO
Length = 182
Score = 96.7 bits (239), Expect = 1e-18
Identities = 55/152 (36%), Positives = 87/152 (57%)
Frame = +1
Query: 70 RLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEA 249
R+FEI+P HYN+ +R+ F QF+ + LPC+VG N YS+ W + A R +
Sbjct: 13 RIFEILPFHYNILVRKYYLFFMQFIMSLHDFLPCKVGLNVYSKSWDTMHAEHNRFAYH-- 70
Query: 250 INCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVF 429
N DY+ FD ++ IA+M++ L E+ + R N++ V R V + ++
Sbjct: 71 FNGDYTGFDTATPRVLMMRIADMVSDLACDGRENAI---VRRNLMKMAVERRILVLRDLY 127
Query: 430 KVNCGLPSGFALTVVVNSVFNEILIRYAYRKL 525
+V G PSGFALTV++NSV N+ + +A+RK+
Sbjct: 128 QVKGGTPSGFALTVIINSVVNQFYLMWAWRKI 159
[113][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
RepID=UPI0000164A59
Length = 682
Score = 96.3 bits (238), Expect = 2e-18
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Frame = +1
Query: 19 CPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYS 195
C KDE +K++V R+FEI+P N+ +R+ + Q L LP +VG N YS
Sbjct: 207 CAKDEKTAPKKVRVQPKTRIFEILPFQINIIIRRYLMFWMQLLMVAHDELPSKVGINVYS 266
Query: 196 REWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRY 375
W +L R R + DYS FD ++ I + IN+L + + EV Q R
Sbjct: 267 ESWDRLLGRHTRLANH--FTGDYSGFDTSTPRVLVYAIIDKINEL---ADDGEVNQRTRR 321
Query: 376 NMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
N++ ++ RY +++++ G PSGFA TV++NSV NE +++++
Sbjct: 322 NIIRFVLNRYLISDGVLYEIHGGTPSGFAPTVMINSVVNEFYLKWSW 368
[114][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
Length = 2081
Score = 96.3 bits (238), Expect = 2e-18
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 1/167 (0%)
Frame = +1
Query: 19 CPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYS 195
C KDE +K++V R+FEI+P N+ +R+ + Q L LP +VG N YS
Sbjct: 1606 CAKDEKTAPKKVRVQPKTRIFEILPFQINIIIRRYLMFWMQLLMVAHDELPSKVGINVYS 1665
Query: 196 REWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRY 375
W +L R R + DYS FD ++ I + IN+L + + EV Q R
Sbjct: 1666 ESWDRLLGRHTRLANH--FTGDYSGFDTSTPRVLVYAIIDKINEL---ADDGEVNQRTRR 1720
Query: 376 NMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
N++ ++ RY +++++ G PSGFA TV++NSV NE +++++
Sbjct: 1721 NIIRFVLNRYLISDGVLYEIHGGTPSGFAPTVMINSVVNEFYLKWSW 1767
[115][TOP]
>UniRef100_UPI0000167D17 RNA-dependent RNA polymerase n=1 Tax=Parsnip yellow fleck virus
RepID=UPI0000167D17
Length = 813
Score = 93.2 bits (230), Expect = 1e-17
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 1/176 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE KI + RLF I+P+ +N+ R+ F F+ NRH+ VG
Sbjct: 223 LICIECPKDERRALDKIYEKPKTRLFSILPVEFNMHARRLFLDFNVFVMANRHKHGIMVG 282
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+SREW LA + + N D++ FDG+ + ++ + N Y
Sbjct: 283 INPHSREWSD-LAISLASFSPYGFNGDFANFDGMFHPSSFSMVSELANIFY-----GNFL 336
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+R N+ L R++ + + +V G PSGF +TV+ NS N ++ A+ LA
Sbjct: 337 STERDNLTRMLTNRFSLMKGAILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLA 392
[116][TOP]
>UniRef100_Q05057 Probable RNA-directed RNA polymerase n=1 Tax=Parsnip yellow fleck
virus (isolate P-121) RepID=POLG_PYFV1
Length = 3027
Score = 93.2 bits (230), Expect = 1e-17
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 1/176 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE KI + RLF I+P+ +N+ R+ F F+ NRH+ VG
Sbjct: 2437 LICIECPKDERRALDKIYEKPKTRLFSILPVEFNMHARRLFLDFNVFVMANRHKHGIMVG 2496
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+SREW LA + + N D++ FDG+ + ++ + N Y
Sbjct: 2497 INPHSREWSD-LAISLASFSPYGFNGDFANFDGMFHPSSFSMVSELANIFY-----GNFL 2550
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+R N+ L R++ + + +V G PSGF +TV+ NS N ++ A+ LA
Sbjct: 2551 STERDNLTRMLTNRFSLMKGAILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLA 2606
[117][TOP]
>UniRef100_Q0PWW6 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Lettuce mottle
virus RepID=Q0PWW6_9VIRU
Length = 292
Score = 92.4 bits (228), Expect = 2e-17
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 1/176 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGA-CRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IE PKDE +KI RLF I+P+ +N+ R+ F NRH+ VG
Sbjct: 68 LICIESPKDERRALKKIYTEPKTRLFSILPVEFNMHARRLYLDFNVVTMANRHKHGIMVG 127
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+SREW LA + + N D++ FDG+ + + + ++ NK Y G+S +
Sbjct: 128 INPHSREWTE-LALGLASFSPIGFNGDFANFDGMFHPDAFDMVCDLANKFY---GDS--R 181
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
A+R + AL R + V V + G PSGF +TV+ NS N ++ A+ +LA
Sbjct: 182 GAERKCLTEALTNRLSLVKGSVLSIGGGGPSGFPMTVIFNSFINLFYLQAAWIQLA 237
[118][TOP]
>UniRef100_UPI0000163D77 RNA-dependent RNA polymerase n=1 Tax=Rice tungro spherical virus
RepID=UPI0000163D77
Length = 621
Score = 90.1 bits (222), Expect = 1e-16
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ +EC KDE KI + A R F I+ N+ RQ F + + R QVG
Sbjct: 224 IMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVG 283
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L+R T + DYS FDG+ + + I N++N Y + EV
Sbjct: 284 INPESMEWSDLINSLLRVNT-KGFAGDYSKFDGIGSPAIYHSIVNVVNAWY---NDGEVN 339
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKL 525
R++++ ++V R G + + + G+PSGFA+TV+ NS N + A+ L
Sbjct: 340 ARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSL 399
Query: 526 APKPEKCRFQQTVCLI 573
C+ T C I
Sbjct: 400 LSPQGSCKDFDTYCKI 415
[119][TOP]
>UniRef100_Q83034 Probable RNA-directed RNA polymerase n=2 Tax=Rice tungro spherical
virus RepID=POLG_RTSVA
Length = 3473
Score = 90.1 bits (222), Expect = 1e-16
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ +EC KDE KI + A R F I+ N+ RQ F + + R QVG
Sbjct: 3076 IMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVG 3135
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L+R T + DYS FDG+ + + I N++N Y + EV
Sbjct: 3136 INPESMEWSDLINSLLRVNT-KGFAGDYSKFDGIGSPAIYHSIVNVVNAWY---NDGEVN 3191
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKL 525
R++++ ++V R G + + + G+PSGFA+TV+ NS N + A+ L
Sbjct: 3192 ARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSL 3251
Query: 526 APKPEKCRFQQTVCLI 573
C+ T C I
Sbjct: 3252 LSPQGSCKDFDTYCKI 3267
[120][TOP]
>UniRef100_Q98645 ORF1 protein (Fragment) n=1 Tax=Rice tungro spherical virus
RepID=Q98645_9SECO
Length = 1619
Score = 89.7 bits (221), Expect = 1e-16
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ +EC KDE KI + A R F I+ N+ RQ F + + R QVG
Sbjct: 1221 IMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVG 1280
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L+R T + DYS FDG+ + + I N++N Y + EV
Sbjct: 1281 INPESMEWSDLINSLLRVNT-KGFAGDYSKFDGIGSPAIYHSIVNVVNAWY---DDGEVN 1336
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKL 525
R++++ ++V R G + + + G+PSGFA+TV+ NS N + A+ L
Sbjct: 1337 ARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSL 1396
Query: 526 APKPEKCRFQQTVCLI 573
C+ T C I
Sbjct: 1397 LSPQGSCKDFDTYCKI 1412
[121][TOP]
>UniRef100_Q91PP5 Probable RNA-directed RNA polymerase n=1 Tax=Rice tungro spherical
virus (isolate Vt6) RepID=POLG_RTSVT
Length = 3471
Score = 89.7 bits (221), Expect = 1e-16
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ +EC KDE KI + A R F I+ N+ RQ F + + R QVG
Sbjct: 3073 IMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVG 3132
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L+R T + DYS FDG+ + + I N++N Y + EV
Sbjct: 3133 INPESMEWSDLINSLLRVNT-KGFAGDYSKFDGIGSPAIYHSIVNVVNAWY---DDGEVN 3188
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKL 525
R++++ ++V R G + + + G+PSGFA+TV+ NS N + A+ L
Sbjct: 3189 ARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSL 3248
Query: 526 APKPEKCRFQQTVCLI 573
C+ T C I
Sbjct: 3249 LSPQGSCKDFDTYCKI 3264
[122][TOP]
>UniRef100_Q1MNG5 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG5_9SECO
Length = 3471
Score = 87.8 bits (216), Expect = 5e-16
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ +EC KDE KI + A R F I+ N+ RQ F + + R QVG
Sbjct: 3073 IMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVG 3132
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L+R T + DYS FDG+ + + I N+++ Y + EV
Sbjct: 3133 INPESMEWSDLINSLLRVNT-KGFAGDYSKFDGIGSPAIYHSIVNVVDAWY---DDGEVN 3188
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKL 525
R++++ ++V R G + + + G+PSGFA+TV+ NS N + A+ L
Sbjct: 3189 ARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSL 3248
Query: 526 APKPEKCRFQQTVCLI 573
C+ T C I
Sbjct: 3249 LSPQGSCKDFDTYCKI 3264
[123][TOP]
>UniRef100_Q1MNG4 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG4_9SECO
Length = 3471
Score = 87.8 bits (216), Expect = 5e-16
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 6/196 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++ +EC KDE KI + A R F I+ N+ RQ F + + R QVG
Sbjct: 3073 IMTMECLKDERRKLAKIYEKPATRTFTILSPEVNILFRQYFGDFAAMVMSTRREHFSQVG 3132
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP S EW ++ L+R T + DYS FDG+ + + I N+++ Y + EV
Sbjct: 3133 INPESMEWSDLINSLLRVNT-KGFAGDYSKFDGIGSPAIYHSIVNVVDAWY---DDGEVN 3188
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKL 525
R++++ ++V R G + + + G+PSGFA+TV+ NS N + A+ L
Sbjct: 3189 ARARHSLISSIVHRDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSL 3248
Query: 526 APKPEKCRFQQTVCLI 573
C+ T C I
Sbjct: 3249 LSPQGSCKDFDTYCKI 3264
[124][TOP]
>UniRef100_Q91NQ2 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q91NQ2_9VIRU
Length = 2107
Score = 85.9 bits (211), Expect = 2e-15
Identities = 53/164 (32%), Positives = 84/164 (51%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P +K++ R+F L LR+ +F + TNR +G N YS +W
Sbjct: 1762 KDERRPLKKVQANKTRVFAASNQGLALALRRYYLSFLDHVMTNRIDNEIGLGVNVYSYDW 1821
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
I+ +L R G ++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L
Sbjct: 1822 TRIVNKLKRVG-DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLL 1877
Query: 385 MALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
L + KVF++N PSG LT ++N V+N I+ RY Y
Sbjct: 1878 EYLFNATWLMNGKVFQLNHSQPSGNPLTTLINCVYNMIIFRYVY 1921
[125][TOP]
>UniRef100_Q1LZW4 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q1LZW4_9VIRU
Length = 2107
Score = 85.9 bits (211), Expect = 2e-15
Identities = 53/164 (32%), Positives = 83/164 (50%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K++ R+F L LR+ +F + TNR +G N YS +W
Sbjct: 1762 KDERRPLEKVQANKTRVFAASNQGLALALRRYYLSFLDHVMTNRIDNEISLGVNVYSYDW 1821
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
I+ +L R G ++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L
Sbjct: 1822 TRIVNKLKRVG-DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLL 1877
Query: 385 MALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
L + KVF++N PSG LT ++N V+N I+ RY Y
Sbjct: 1878 EYLFNATWLMNGKVFQLNHSQPSGNPLTTLINCVYNMIIFRYVY 1921
[126][TOP]
>UniRef100_Q4JFT3 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q4JFT3_9VIRU
Length = 2107
Score = 85.1 bits (209), Expect = 3e-15
Identities = 53/164 (32%), Positives = 83/164 (50%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K++ R+F L LR+ +F + TNR +G N YS +W
Sbjct: 1762 KDERRPLEKVQANKTRVFAASNQGLALALRRYYLSFLDHVMTNRIDNEIGLGVNVYSYDW 1821
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
I+ +L R G ++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L
Sbjct: 1822 TRIVNKLKRVG-DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLL 1877
Query: 385 MALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
L + KVF++N PSG LT ++N V+N I+ RY Y
Sbjct: 1878 EYLFNATWLMNGKVFQLNHSQPSGNPLTTLINCVYNMIIFRYVY 1921
[127][TOP]
>UniRef100_Q5DM98 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q5DM98_9VIRU
Length = 2107
Score = 84.3 bits (207), Expect = 6e-15
Identities = 52/164 (31%), Positives = 83/164 (50%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K++ R+F L +R+ +F + TNR +G N YS +W
Sbjct: 1762 KDERRPLEKVQANKTRVFAASNQGLALAIRRYYLSFLDHVMTNRIDNEIGLGVNVYSYDW 1821
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
I+ +L R G ++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L
Sbjct: 1822 TRIVNKLKRVG-DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLL 1877
Query: 385 MALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
L + KVF++N PSG LT ++N V+N I+ RY Y
Sbjct: 1878 EYLFNATWLMNGKVFQLNHSQPSGNPLTTLINCVYNMIIFRYVY 1921
[128][TOP]
>UniRef100_Q09X76 Nonstructural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q09X76_9VIRU
Length = 2107
Score = 82.8 bits (203), Expect = 2e-14
Identities = 52/164 (31%), Positives = 82/164 (50%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K++ R+F L R+ +F + TNR +G N YS +W
Sbjct: 1762 KDERRPLEKVQANKTRVFAASNQGLALAQRRYYLSFLDHVMTNRIDNEIGLGVNVYSYDW 1821
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
I+ +L R G ++ I D+S FDG LN+Q++ ++ ++ Y G+ R+ +L
Sbjct: 1822 TRIVNKLKRVG-DKVIAGDFSNFDGSLNSQILSRVSEIVTDWY---GDDAENGLIRHTLL 1877
Query: 385 MALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
L + KVF++N PSG LT ++N V+N I+ RY Y
Sbjct: 1878 EYLFNATWLMNGKVFQLNHSQPSGNPLTTLINCVYNMIIFRYVY 1921
[129][TOP]
>UniRef100_A6NA62 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato torrado
virus RepID=A6NA62_9SECO
Length = 216
Score = 82.8 bits (203), Expect = 2e-14
Identities = 48/136 (35%), Positives = 72/136 (52%)
Frame = +1
Query: 130 FTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECI 309
F+ L + + LPC+VG NP EW +LA R ++ + DYS+FDG +
Sbjct: 1 FSASLMASHNALPCKVGINPGGIEWT-LLANGFRAVSDTGFSADYSSFDGRAPIFAFQWF 59
Query: 310 ANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVF 489
++++ Y S A R+ +LM Y KVF++ G+PSGFALTV+ NS+
Sbjct: 60 CDLVDDYYGSPPGSPDSNA-RHVLLMMASCHYTICENKVFRLVGGMPSGFALTVIFNSLL 118
Query: 490 NEILIRYAYRKLAPKP 537
NE +RYA+ L +P
Sbjct: 119 NEFYMRYAFISLLRRP 134
[130][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
RepID=Q9IJX4_CRPV
Length = 1771
Score = 80.5 bits (197), Expect = 9e-14
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 13/204 (6%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
++V ++ KDE P K+ G R+F P H+ + R+ F +L NR VG
Sbjct: 1416 DVVFVDTLKDERRPIEKVDAGKTRVFSAGPQHFVVAFRKYFLPFAAYLMNNRIDNEIAVG 1475
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVI-ECIANMINKLYALSGESEV 357
TN YS +W I RL + G N+ I D+ FDG L AQ + + +
Sbjct: 1476 TNVYSTDWERIAKRLKKHG-NKVIAGDFGNFDGSLVAQFFGQSCGKSFYPWFKTFNDVNT 1534
Query: 358 QQAQRYNMLMALVGRYAFV-------GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ +R LM +G + + G V+ PSG TV++N ++N +++R +
Sbjct: 1535 EDGKR--NLMICIGLWTHIVHSVHSYGDNVYMWTHSQPSGNPFTVIINCLYNSMIMRIVW 1592
Query: 517 ----RKLAPKPEKC-RFQQTVCLI 573
RKLAP+ + +F++ V +I
Sbjct: 1593 ILLARKLAPEMQSMKKFRENVSMI 1616
[131][TOP]
>UniRef100_A5A104 Polyprotein n=1 Tax=Brevicoryne brassicae picorna-like virus
RepID=A5A104_9VIRU
Length = 2983
Score = 77.4 bits (189), Expect = 7e-13
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
Frame = +1
Query: 16 ECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
+C KD LP KIK+ G R+F I P+ + + RQ F R +G N +
Sbjct: 2642 DCLKDARLPLSKIKIPGKVRVFSISPVDFTIQFRQYFLDFIASYTKARFNCEHAIGINVH 2701
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
EW LA + I DYS F LN++V+ +I K Y G S R
Sbjct: 2702 GYEWSE-LAHFFEG--KKLITGDYSGFGPSLNSEVVTAAFRIICKWYKQYGCSVEDNHIR 2758
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
M L+ + +++V CGLPSG TV+ NS+ N I IR A+
Sbjct: 2759 MMMSKELINAKHLMRDYLYEVQCGLPSGNPATVIFNSIVNSIYIRCAW 2806
[132][TOP]
>UniRef100_Q9WCE9 Polyprotein n=1 Tax=Sacbrood virus RepID=Q9WCE9_9VIRU
Length = 2858
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 1/178 (0%)
Frame = +1
Query: 13 IECPKDEL-LPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNP 189
I+ KDE LPE+ K G R+F P+ Y + +RQ F R +L VG N
Sbjct: 2519 IDTLKDERKLPEKVRKYGGTRVFCNPPIDYIVSMRQYYMHFVAAFMEQRFKLMHAVGINV 2578
Query: 190 YSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQ 369
S EW + ++L+ G N DYS F NAQ+ + ++ + + + V + +
Sbjct: 2579 QSTEWTLLASKLLAKG-NNICTIDYSNFGPGFNAQIAKAAMELMVR-WTMEHVEGVNEIE 2636
Query: 370 RYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
Y +L + V +++ CG PSG +TVV+N++ N + I A+ L E+
Sbjct: 2637 AYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKER 2694
[133][TOP]
>UniRef100_Q8QY61 Polyprotein n=1 Tax=Sacbrood virus RepID=Q8QY61_9VIRU
Length = 2860
Score = 76.6 bits (187), Expect = 1e-12
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 1/178 (0%)
Frame = +1
Query: 13 IECPKDEL-LPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNP 189
I+ KDE LPE+ K G R+F P+ Y + +RQ F R +L VG N
Sbjct: 2521 IDTLKDERKLPEKVRKYGGTRVFCNPPIDYIVSMRQYYMHFVAAFMEQRFKLMHAVGINV 2580
Query: 190 YSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQ 369
S EW + ++L+ G N DYS F NAQ+ + ++ + + + V + +
Sbjct: 2581 QSTEWTLLASKLLAKG-NNICTIDYSNFGPGFNAQIAKAAMELMVR-WTMEHVEGVNEIE 2638
Query: 370 RYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK 543
Y +L + V +++ CG PSG +TVV+N++ N + I A+ L E+
Sbjct: 2639 AYTLLHECLNSVHLVSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKER 2696
[134][TOP]
>UniRef100_O56050 Nonstructural polyprotein n=1 Tax=Rhopalosiphum padi virus
RepID=O56050_9VIRU
Length = 1998
Score = 74.3 bits (181), Expect = 6e-12
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 22/203 (10%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
E+V + KD+ + K G RLF P+HY + LR+ F L R R VG
Sbjct: 1622 EIVWTDTLKDQKIAIAKANAGKTRLFSAAPMHYAIALRKVCAPFVAHLSRMRIRNTICVG 1681
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+S EW + +L+ G + I DYS FDG L AQ++ ++ Y L+ +
Sbjct: 1682 VNPFSSEWSAVAQKLLVKGPH-VIAGDYSNFDGSLPAQLVYAATEIMADWYDLNW--DYV 1738
Query: 361 QAQRYNML---MALVGRYAFV-------------------GQKVFKVNCGLPSGFALTVV 474
+A + N++ + L Y G ++ V G+PSG +T
Sbjct: 1739 EAHKRNVVGGQVLLKDEYLDYLRRLYYECVHHLHIMNFKQGSLMYYVRNGIPSGCPVTAP 1798
Query: 475 VNSVFNEILIRYAYRKLAPKPEK 543
+NS+ N++ + Y + + P K
Sbjct: 1799 LNSIVNQMALVYCWYHIIDDPLK 1821
[135][TOP]
>UniRef100_A9QXE1 Nonstructural polyprotein n=1 Tax=Rhopalosiphum padi virus
RepID=A9QXE1_9VIRU
Length = 1998
Score = 74.3 bits (181), Expect = 6e-12
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 22/203 (10%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
E+V + KD+ + K G RLF P+HY + LR+ F L R R VG
Sbjct: 1622 EIVWTDTLKDQKIAIAKANAGKTRLFSAAPMHYAIALRKVCAPFVAHLSRMRIRNTICVG 1681
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+S EW + +L+ G + I DYS FDG L AQ++ ++ Y L+ +
Sbjct: 1682 VNPFSSEWSAVAQKLLVKGPH-VIAGDYSNFDGSLPAQLVYAATEIMADWYDLNW--DYV 1738
Query: 361 QAQRYNML---MALVGRYAFV-------------------GQKVFKVNCGLPSGFALTVV 474
+A + N++ + L Y G ++ V G+PSG +T
Sbjct: 1739 EAHKRNVVGGQVLLKDEYLDYLRRLYYECVHHLHIMNFKQGSLMYYVRNGIPSGCPVTAP 1798
Query: 475 VNSVFNEILIRYAYRKLAPKPEK 543
+NS+ N++ + Y + + P K
Sbjct: 1799 LNSIVNQMALIYCWYHIIDDPLK 1821
[136][TOP]
>UniRef100_Q5Y975 Nonstructural polyprotein n=1 Tax=Solenopsis invicta virus 1
RepID=Q5Y975_9VIRU
Length = 1396
Score = 73.2 bits (178), Expect = 1e-11
Identities = 48/168 (28%), Positives = 75/168 (44%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +NL R+ F L NR +GTN Y
Sbjct: 1049 VDTLKDERRPIEKVDALKTRVFSNGPMDFNLAFRKYFLGFIAHLMENRIDNEVAIGTNVY 1108
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
SR+W + +L + G N D+S FDG LNA ++ A M N+ Y + R
Sbjct: 1109 SRDWTKLAKKLKQKGKN-VFAGDFSNFDGSLNAMIMYLFARMANEFY-----DDGNDLIR 1162
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
Y ++ ++ Q + + PSG T +N + N I +R +
Sbjct: 1163 YVLIEEILNSVHLCEQFFYMMTHSQPSGNPATTPLNCLINSIGLRLCF 1210
[137][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
Length = 1759
Score = 72.0 bits (175), Expect = 3e-11
Identities = 51/184 (27%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
++ ++ KDE K+ VG R+F P H+ + RQ F +L NR VGT
Sbjct: 1405 VIFVDTLKDERRDIAKVNVGKTRVFSAGPQHFVVAFRQYFLPFAAWLMHNRISNEVAVGT 1464
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
N YS +W I RL G++ I D+ FDG L AQ++ I I ++ L +++
Sbjct: 1465 NVYSSDWERIAKRLKTKGSH-VIAGDFGNFDGSLVAQILWAIFWEIFVVW-LKQFIDIEN 1522
Query: 364 AQRYNMLMALVGRYAFV-------GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
++ +L +G ++ + V+ PSG TV++N ++N I++R ++ +
Sbjct: 1523 SEGKRILCICLGLWSHLVHSVHIYEDNVYMWTHSQPSGNPFTVIINCLYNSIIMRLSWIR 1582
Query: 523 LAPK 534
+ K
Sbjct: 1583 VMEK 1586
[138][TOP]
>UniRef100_B3TZL6 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZL6_9VIRU
Length = 1950
Score = 72.0 bits (175), Expect = 3e-11
Identities = 46/168 (27%), Positives = 78/168 (46%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1612 VDTLKDERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVY 1671
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y E+ + R
Sbjct: 1672 SQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGAENSL---IR 1727
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ +LM + V+ + PSG T +N N + +R +
Sbjct: 1728 HVLLMDVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCF 1775
[139][TOP]
>UniRef100_Q80AG3 Non-structural polyprotein n=1 Tax=Kashmir bee virus
RepID=Q80AG3_9VIRU
Length = 1933
Score = 71.6 bits (174), Expect = 4e-11
Identities = 48/174 (27%), Positives = 80/174 (45%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1595 VDTLKDERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVY 1654
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y E+ + R
Sbjct: 1655 SQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IR 1710
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +LM + V+ + PSG T +N N + +R + A K
Sbjct: 1711 HVLLMDVYNSVHVCNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATK 1764
[140][TOP]
>UniRef100_Q0PWW7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Dandelion yellow
mosaic virus RepID=Q0PWW7_9VIRU
Length = 262
Score = 71.6 bits (174), Expect = 4e-11
Identities = 45/153 (29%), Positives = 72/153 (47%)
Frame = +1
Query: 70 RLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEA 249
RLF I+P+ +N+ R+ F NRH+ VG NP+SREW +A + +
Sbjct: 14 RLFSILPVEFNMHARRLYLDFNVLTMANRHKHGIMVGINPHSREWTE-MAISLASFSPLG 72
Query: 250 INCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVF 429
N D++ FDG+ + + + Y G + + +R + +L R + V V
Sbjct: 73 FNGDFANFDGMFHPDSFAMVEELATYFY--RGHNAL---ERKTLTESLTNRLSLVKGAVL 127
Query: 430 KVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+ G PSGF +TV+ NS N + A+ LA
Sbjct: 128 SIGGGGPSGFPMTVIFNSYINLFYLMSAWSHLA 160
[141][TOP]
>UniRef100_Q5S8C7 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=Q5S8C7_9VIRU
Length = 1900
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/168 (26%), Positives = 77/168 (45%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1562 VDTLKDERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVY 1621
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y + + R
Sbjct: 1622 SQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY---DDGKENNLIR 1677
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ +LM + V+ + PSG T +N N + +R +
Sbjct: 1678 HVLLMDVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCF 1725
[142][TOP]
>UniRef100_B3TZL4 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZL4_9VIRU
Length = 1950
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/168 (26%), Positives = 77/168 (45%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1612 VDTLKDERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVY 1671
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y + + R
Sbjct: 1672 SQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY---DDGKENNLIR 1727
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ +LM + V+ + PSG T +N N + +R +
Sbjct: 1728 HVLLMDVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCF 1775
[143][TOP]
>UniRef100_B3TZF0 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZF0_9VIRU
Length = 1950
Score = 71.2 bits (173), Expect = 5e-11
Identities = 46/168 (27%), Positives = 78/168 (46%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1612 VDTLKDERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVY 1671
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y E+ + R
Sbjct: 1672 SQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGAENGL---IR 1727
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
+ +LM + V+ + PSG T +N N + +R +
Sbjct: 1728 HVLLMDVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCF 1775
[144][TOP]
>UniRef100_Q9DSN9 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q9DSN9_9VIRU
Length = 1906
Score = 70.9 bits (172), Expect = 7e-11
Identities = 47/174 (27%), Positives = 79/174 (45%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1563 VDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVY 1622
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L G + I D+S FDG LN ++E A++ N+ Y E+ + R
Sbjct: 1623 SQDWNKTVRKLKTMGP-KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENAL---IR 1678
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +LM + G V+ + PSG T +N N + +R + + K
Sbjct: 1679 HVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKK 1732
[145][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
RepID=A7KCA2_9VIRU
Length = 1614
Score = 70.9 bits (172), Expect = 7e-11
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE + +K KVG R+F + + L +R+ +F + LQ R GT S EW
Sbjct: 1146 KDEPVSFKKAKVGKTRVFTGATMDWYLIVRKYLLSFARLLQNERFAFEAAPGTIAQSLEW 1205
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
+ +++ G + I DY AFD ++ + I ++I LSG + Q ++
Sbjct: 1206 HELYDYVVKNGEDRVIAGDYKAFDKRMSPKEILAAFDIIIYFCQLSGNYSEEDIQ---II 1262
Query: 385 MALVGRYAFV----GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRF 552
+ AF + ++ PSG LTV++NS+ N + +RY Y L P+ F
Sbjct: 1263 RCIAEDTAFALVDYNGDLVQLYGSNPSGNPLTVILNSIVNSLRMRYVYFMLNPEHTVTTF 1322
Query: 553 QQTVCLI 573
+ V L+
Sbjct: 1323 KDNVNLM 1329
[146][TOP]
>UniRef100_Q0PWW5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Lettuce mottle
virus RepID=Q0PWW5_9VIRU
Length = 187
Score = 70.5 bits (171), Expect = 9e-11
Identities = 44/133 (33%), Positives = 69/133 (51%)
Frame = +1
Query: 130 FTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECI 309
F NRH+ VG NP+SREW LA + + N D++ FDG+ + + + +
Sbjct: 6 FNVVTMANRHKHGIMVGINPHSREWTE-LALGLASFSPIGFNGDFANFDGMFHPEAFDMV 64
Query: 310 ANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVF 489
++ NK Y G+S + A+R + AL R + V V + G PSGF +TV+ NS
Sbjct: 65 CDLANKFY---GDS--RGAERKCLTEALTNRLSLVKGSVLSIGGGGPSGFPMTVIFNSFI 119
Query: 490 NEILIRYAYRKLA 528
N ++ A+ +LA
Sbjct: 120 NLFYLQAAWIQLA 132
[147][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 70.5 bits (171), Expect = 9e-11
Identities = 34/41 (82%), Positives = 37/41 (90%)
Frame = +1
Query: 451 SGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLI 573
SGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+
Sbjct: 1 SGFALTVVVNSVFNEILIRYAYKKLAPVPERNRFGSTVCLL 41
[148][TOP]
>UniRef100_Q8BDE1 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q8BDE1_9VIRU
Length = 1904
Score = 70.1 bits (170), Expect = 1e-10
Identities = 47/174 (27%), Positives = 79/174 (45%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1561 VDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVY 1620
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L G + I D+S FDG LN ++E A++ N+ Y E+ + R
Sbjct: 1621 SQDWNKTVRKLKTMGP-KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IR 1676
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +LM + G V+ + PSG T +N N + +R + + K
Sbjct: 1677 HVLLMDVYNSTHICGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKK 1730
[149][TOP]
>UniRef100_Q8B3M2 Polyprotein n=1 Tax=Deformed wing virus RepID=Q8B3M2_9VIRU
Length = 2893
Score = 70.1 bits (170), Expect = 1e-10
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2555 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 2614
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ RL + GT+ + DY F D + A E I + + +
Sbjct: 2615 DVNSLEWTNLATRLSKXGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 2673
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 2674 EMKRVM-WTMAQEILAPSHLYRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 2732
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 2733 LP-LSEFSQNVVLV 2745
[150][TOP]
>UniRef100_C1K2M4 Protease/RNA-dependent RNA polymerase (Fragment) n=1 Tax=Nasonia
vitripennis virus RepID=C1K2M4_9VIRU
Length = 787
Score = 70.1 bits (170), Expect = 1e-10
Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Frame = +1
Query: 19 CPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYS 195
C KD +P KI + G R+FE+ P+ + + RQ F QT R +G NP
Sbjct: 435 CLKDARIPIYKIPEPGKTRVFEMSPVDFTISQRQYFLDFYVAYQTARMNAENTIGINPDG 494
Query: 196 REWGHILARLMRPGTNEAINCDYSAFDG-LLNAQVIECIANMIN-------KLYALSGES 351
EW + RL + + DYSA+ LL++ ++ +N ++ E
Sbjct: 495 PEWTELANRLQEFSPH-ILTADYSAYGPRLLHSVILRAKMAELNWYEQEEERVCMPEEER 553
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E RY M+ L+ V + + N G+PSG A TV+ NS N I IR AY LA
Sbjct: 554 ERNFKIRYTMIEELINPLNIVKDCIVRFNTGMPSGNAGTVITNSECNSIYIRCAYLGLAR 613
Query: 532 K 534
K
Sbjct: 614 K 614
[151][TOP]
>UniRef100_Q8BDE0 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q8BDE0_9VIRU
Length = 1904
Score = 69.7 bits (169), Expect = 2e-10
Identities = 47/174 (27%), Positives = 79/174 (45%)
Frame = +1
Query: 13 IECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPY 192
++ KDE P K+ R+F P+ +++ R F L NR +GTN Y
Sbjct: 1561 VDTLKDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVY 1620
Query: 193 SREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
S++W + +L G + I D+S FDG LN ++E A++ N+ Y E+ + R
Sbjct: 1621 SQDWNKTVRKLKTMGP-KVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IR 1676
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ +LM + G V+ + PSG T +N N + +R + + K
Sbjct: 1677 HVLLMDVYNSTHVCGDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKK 1730
[152][TOP]
>UniRef100_Q7TG18 Polyprotein n=1 Tax=Deformed wing virus RepID=Q7TG18_9VIRU
Length = 2893
Score = 69.3 bits (168), Expect = 2e-10
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2555 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 2614
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ RL + GT+ + DY F D + A E I + + +
Sbjct: 2615 DVNSLEWTNLATRLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 2673
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 2674 EMKRVM-WTMAQEILAPSHLYRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 2732
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 2733 LP-LSEFSQNVVLV 2745
[153][TOP]
>UniRef100_Q6XMI0 Polyprotein (Fragment) n=1 Tax=Deformed wing virus RepID=Q6XMI0_9VIRU
Length = 1566
Score = 69.3 bits (168), Expect = 2e-10
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 1240 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 1299
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ RL + GT+ + DY F D + A E I + + +
Sbjct: 1300 DVNSLEWTNLATRLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 1358
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 1359 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 1417
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 1418 LP-LSEFSQNVVLV 1430
[154][TOP]
>UniRef100_Q8B594 Nonstructural polyprotein n=1 Tax=Aphid lethal paralysis virus
RepID=Q8B594_ALPV
Length = 2035
Score = 68.9 bits (167), Expect = 3e-10
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 24/187 (12%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
++ I+ KD +P K VG RLF PLHY + RQ F NR + VG
Sbjct: 1659 IIWIDTLKDAKIPIAKANVGKTRLFTACPLHYTILFRQYFLPFIAHAMRNRVQNSIAVGI 1718
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQ 363
NP S EW + RL R G I DYS FDG L Q +E +A I + + ++
Sbjct: 1719 NPMSPEWDLLAKRLKRNG-KHVIAGDYSNFDGTLPVQYVE-VAVKIMVDWFMRNWDQIVA 1776
Query: 364 AQRY-------------NMLMAL---------VGRYAFV--GQKVFKVNCGLPSGFALTV 471
A R+ LM + + ++ + ++ V G+PSG T
Sbjct: 1777 ADRHVINGRELDYDEFEQFLMKIGVECINHLHIANHSDLTGAALIYYVRNGIPSGCPATA 1836
Query: 472 VVNSVFN 492
++NS+ N
Sbjct: 1837 ILNSIVN 1843
[155][TOP]
>UniRef100_Q7LZW0 Polyprotein n=1 Tax=Parsnip yellow fleck virus RepID=Q7LZW0_9SECO
Length = 637
Score = 68.6 bits (166), Expect = 3e-10
Identities = 53/176 (30%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Frame = +1
Query: 4 LVVIECPKDELLPERKI-KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IECPKDE KI + RLF I+P+ +N+ R+ F F+ NRH+ VG
Sbjct: 391 LICIECPKDERRALDKIYEKPKTRLFSILPVEFNMHARRLFLDFNVFVMANRHKHGIMVG 450
Query: 181 TNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQ 360
NP+SREW LA + + N D++ FDG+ + SG
Sbjct: 451 INPHSREWSD-LAISLASFSPYGFNGDFANFDGMFHPS---------------SG----- 489
Query: 361 QAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA 528
+ +V G PSGF +TV+ NS N ++ A+ LA
Sbjct: 490 --------------------AILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLA 525
[156][TOP]
>UniRef100_Q4QZ13 Putative polymerase (Fragment) n=1 Tax=Lettuce mottle virus
RepID=Q4QZ13_9VIRU
Length = 187
Score = 68.6 bits (166), Expect = 3e-10
Identities = 43/133 (32%), Positives = 67/133 (50%)
Frame = +1
Query: 130 FTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECI 309
F NRH+ VG NP+SREW LA + + N D++ FDG+ + E +
Sbjct: 6 FNVVTMANRHKHGIMVGINPHSREWTE-LALGLASFSPIGFNGDFANFDGMFHPDAFEMV 64
Query: 310 ANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVF 489
++ NK Y G+S + +R + AL R + + V + G PSGF +TV+ NS
Sbjct: 65 CDLANKFY---GDS--RGPERKCLTEALTNRLSLIKGSVLSIGGGGPSGFPMTVIFNSFI 119
Query: 490 NEILIRYAYRKLA 528
N ++ A+ +LA
Sbjct: 120 NLFYLQAAWIQLA 132
[157][TOP]
>UniRef100_Q9DSG1 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9DSG1_9VIRU
Length = 228
Score = 68.2 bits (165), Expect = 4e-10
Identities = 46/169 (27%), Positives = 77/169 (45%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRIANEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLM 387
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y E+ + R+ +L+
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IRHVLLV 116
Query: 388 ALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ V+ + PSG T +N N + +R + A K
Sbjct: 117 DVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATK 165
[158][TOP]
>UniRef100_Q76LW4 Polyprotein n=1 Tax=Kakugo virus RepID=Q76LW4_9VIRU
Length = 2893
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2555 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 2614
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 2615 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 2673
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 2674 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 2732
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 2733 LP-LSEFSQNVVLV 2745
[159][TOP]
>UniRef100_Q0EDK8 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK8_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYXDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[160][TOP]
>UniRef100_Q0EDK3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK3_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[161][TOP]
>UniRef100_Q0EDJ8 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ8_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[162][TOP]
>UniRef100_Q0EDJ7 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ7_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLXAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVXSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[163][TOP]
>UniRef100_Q0EDJ6 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ6_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLXAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVXSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[164][TOP]
>UniRef100_Q0EDJ5 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ5_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[165][TOP]
>UniRef100_Q0EDI6 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDI6_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGXTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[166][TOP]
>UniRef100_A0ZSF0 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=A0ZSF0_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[167][TOP]
>UniRef100_A0ZSE7 Polyprotein (Fragment) n=13 Tax=Kakugo virus RepID=A0ZSE7_9VIRU
Length = 297
Score = 67.0 bits (162), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[168][TOP]
>UniRef100_Q0EDJ3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ3_9VIRU
Length = 297
Score = 66.6 bits (161), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLXAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[169][TOP]
>UniRef100_Q0EDI5 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDI5_9VIRU
Length = 297
Score = 66.6 bits (161), Expect = 1e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGVTD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[170][TOP]
>UniRef100_Q7TFA5 Polyprotein n=1 Tax=Varroa destructor virus 1 RepID=Q7TFA5_9VIRU
Length = 2893
Score = 66.2 bits (160), Expect = 2e-09
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2555 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 2614
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + Y +
Sbjct: 2615 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLN-YTEEDDK 2672
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
+ + + M ++ V++V CG+PSG +T ++N++ N +LIR A++ +
Sbjct: 2673 DEMKRVMWTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWQGITD 2732
Query: 532 KP 537
P
Sbjct: 2733 LP 2734
[171][TOP]
>UniRef100_Q0EDK9 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK9_9VIRU
Length = 297
Score = 65.9 bits (159), Expect = 2e-09
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGXTD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[172][TOP]
>UniRef100_Q0EDJ0 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ0_9VIRU
Length = 297
Score = 65.9 bits (159), Expect = 2e-09
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTHX-VTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDXKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T + N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDIXNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[173][TOP]
>UniRef100_Q0EDK4 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK4_9VIRU
Length = 297
Score = 65.5 bits (158), Expect = 3e-09
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNXX 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAXEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[174][TOP]
>UniRef100_A0ZSF1 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=A0ZSF1_9VIRU
Length = 297
Score = 65.5 bits (158), Expect = 3e-09
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFXISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDXKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAXXILAPSHXCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 LP-LSEFSQNVVLV 192
[175][TOP]
>UniRef100_Q0EDJ2 Polyprotein (Fragment) n=2 Tax=Kakugo virus RepID=Q0EDJ2_9VIRU
Length = 297
Score = 65.1 bits (157), Expect = 4e-09
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 5/194 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVXKCRIPGKTRIFSISPVQFTIPFRQYXLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYXEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V +V CG+PSG T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVXRVPCGIPSGSPXTDILNTISNCLLIRLAWLGITD 179
Query: 532 KPEKCRFQQTVCLI 573
P F Q V L+
Sbjct: 180 XP-LSEFSQNVVLV 192
[176][TOP]
>UniRef100_C1K2M5 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Nasonia vitripennis
virus RepID=C1K2M5_9VIRU
Length = 386
Score = 65.1 bits (157), Expect = 4e-09
Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Frame = +1
Query: 43 ERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILAR 222
E+ +K G R+F + P+ ++ LRQ T T +L+ +R +G NP EWG I+
Sbjct: 1 EKLMKPGGTRVFSMSPVTASIVLRQYTLDLTSYLRKHRISNWIGIGINPDGPEWGKIVTL 60
Query: 223 LMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYA--LSGESEVQQAQRYNMLMALV 396
L G N + D+S F LN V+ N++ Y L+ E R ++ L+
Sbjct: 61 LRTKGDN-IFSIDFSNFGPGLNINVVYEFYNLMTSFYGKYLNLTEEDGNVMRC-LIQELM 118
Query: 397 GRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYR 519
G +++ G PSG A+TV +NS + + I ++
Sbjct: 119 YSVHLAGGTLYRTKSGSPSGAAITVEINSFVHLMYINICWQ 159
[177][TOP]
>UniRef100_Q0EDK2 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK2_9VIRU
Length = 297
Score = 64.7 bits (156), Expect = 5e-09
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KP 537
P
Sbjct: 180 LP 181
[178][TOP]
>UniRef100_Q0EDK1 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK1_9VIRU
Length = 297
Score = 64.7 bits (156), Expect = 5e-09
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 5/182 (2%)
Frame = +1
Query: 7 VVIECPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGT 183
+ +C KD LP K ++ G R+F I P+ + + RQ F + R +G
Sbjct: 2 IFTDCLKDTCLPVEKCRIPGKTRIFSISPVQFTIPFRQYYLDFMASYRAARLNAEHGIGI 61
Query: 184 NPYSREWGHILARLMRPGTNEAINCDYSAF----DGLLNAQVIECIANMINKLYALSGES 351
+ S EW ++ L + GT+ + DY F D + A E I + + +
Sbjct: 62 DVNSLEWTNLATSLSKYGTH-IVTGDYKNFGPGLDSDVAASAFEIIIDWVLHYTEEDNKD 120
Query: 352 EVQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAP 531
E+++ + M ++ V++V CG+PSG +T ++N++ N +LIR A+ +
Sbjct: 121 EMKRVM-WTMAQEILAPSHLCRDLVYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITD 179
Query: 532 KP 537
P
Sbjct: 180 LP 181
[179][TOP]
>UniRef100_Q6QLR4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Venturia canescens
picorna-like virus RepID=Q6QLR4_9PICO
Length = 514
Score = 62.4 bits (150), Expect = 2e-08
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Frame = +1
Query: 19 CPKDELLPERKIKV-GACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYS 195
C KD +P RK+ V G+ R+FE+ P+ + RQ FT + R + +G NP
Sbjct: 188 CLKDARIPNRKVSVPGSTRVFEMSPVDLTIAQRQFFMDFTVAYRVARLQAENSIGINPDG 247
Query: 196 REWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRY 375
+EW ++ L + DYS + L+ ++E + + ++ + E ++
Sbjct: 248 KEWTQLVEYLTEFSPC-ILTADYSGYGPRLSHALLERSFDA-SIVWLMDNEVCEEEEMND 305
Query: 376 NMLMALVGRYAF------VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ LV ++ V VF+ CGLPSG TV NS N + IR A+ +LA +
Sbjct: 306 RCVTRLVLKHEVTHGLHVVKDLVFRPTCGLPSGNCETVERNSQTNSLYIRIAFYELAKR 364
[180][TOP]
>UniRef100_Q2HWK3 Polyprotein n=1 Tax=Rhizosolenia setigera RNA virus
RepID=Q2HWK3_9VIRU
Length = 1605
Score = 62.0 bits (149), Expect = 3e-08
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 7/178 (3%)
Frame = +1
Query: 19 CPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSR 198
C KDE K KV R F+ P+ +R+ FL + C VG N R
Sbjct: 1256 CTKDEPTKITKDKV---RCFQASPVSLQFNIRKYFLTLCHFLSSASLVSECAVGINSQGR 1312
Query: 199 EWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYN 378
W + +++ G N + D+ A+D ++A++ A + + L+G +E +
Sbjct: 1313 GWHELNQHMIKYGKNRIVAGDFKAYDQHMSARMTLMAAKVFEYIAGLAGYTEEE------ 1366
Query: 379 MLMALVGRYAFVGQKVFKVNCGL-------PSGFALTVVVNSVFNEILIRYAYRKLAP 531
L + G V V +N L PSG LTV NS+ N + R A+RK+ P
Sbjct: 1367 -LKIMRGASTEVSYPVMSLNGELIQLYGSNPSGQNLTVYTNSIVNSLYHRCAFRKIYP 1423
[181][TOP]
>UniRef100_B4ZF24 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Arabis mosaic virus
RepID=B4ZF24_ARMV
Length = 113
Score = 62.0 bits (149), Expect = 3e-08
Identities = 30/59 (50%), Positives = 37/59 (62%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
L+ IE PKDE L KI+ RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 54 LISIETPKDERLKRSKIETPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRSHLPCQVG 112
[182][TOP]
>UniRef100_P08545 RNA-directed RNA polymerase 3D-POL n=1 Tax=Theiler's
encephalomyelitis virus (STRAIN GDVII) RepID=POLG_TMEVG
Length = 2303
Score = 62.0 bits (149), Expect = 3e-08
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNR-HRLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 2001 KDEIRPLEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGFELGSAIGTDP-DVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L G N + DYS FD + + EC +IN + + + A+
Sbjct: 2060 WTRYAAELS--GFNYVYDVDYSNFDASHSTAMFEC---LINNFFTEQNGFDRRIAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[183][TOP]
>UniRef100_UPI0000167EF0 protein 3D n=1 Tax=Theilovirus RepID=UPI0000167EF0
Length = 461
Score = 61.6 bits (148), Expect = 4e-08
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 159 KDEIRPLEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-DVD 217
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L G N + DYS FD + + EC +IN + + + A+
Sbjct: 218 WTRYAAELS--GFNYVYDVDYSNFDASHSTAMFEC---LINNFFTEQNGFDRRIAEYLRS 272
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 273 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 313
[184][TOP]
>UniRef100_Q88595 Theilers murine encephalomyelitis virus (TMEV) complete genome n=1
Tax=Theiler's encephalomyelitis virus (STRAIN GDVII)
RepID=Q88595_TMEVG
Length = 2303
Score = 61.6 bits (148), Expect = 4e-08
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 2001 KDEIRPLEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-DVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L G N + DYS FD + + EC +IN + + + A+
Sbjct: 2060 WTRYAAELS--GFNYVYDVDYSNFDASHSTAMFEC---LINNFFTEQNGFDRRIAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[185][TOP]
>UniRef100_B4ZF26 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine fanleaf
virus RepID=B4ZF26_GFLV
Length = 115
Score = 61.6 bits (148), Expect = 4e-08
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IE PKDE L KI RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 55 LVCIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQVG 113
[186][TOP]
>UniRef100_B4ZF25 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Grapevine fanleaf
virus RepID=B4ZF25_GFLV
Length = 115
Score = 61.2 bits (147), Expect = 5e-08
Identities = 31/59 (52%), Positives = 36/59 (61%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IE PKDE L KI RLF ++PL YNL LR K +F++ L R LPCQVG
Sbjct: 55 LVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQVG 113
[187][TOP]
>UniRef100_Q0ZKA1 Polyprotein n=1 Tax=Theiler's encephalomyelitis virus
RepID=Q0ZKA1_9PICO
Length = 2303
Score = 60.1 bits (144), Expect = 1e-07
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 2001 KDEIRPIEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-DVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W L G N + DYS FD + + EC +IN + + + A+
Sbjct: 2060 WTRYAVELS--GFNYVYDVDYSNFDASHSTAMFEC---LINNFFTEQNGFDRRIAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[188][TOP]
>UniRef100_O36184 Nonstructural polyprotein n=1 Tax=Plautia stali intestine virus
RepID=O36184_9VIRU
Length = 1811
Score = 60.1 bits (144), Expect = 1e-07
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 6/169 (3%)
Frame = +1
Query: 28 DELLPERKI--KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSRE 201
D L ERK K RLF PL Y + R L + VGTNPYS +
Sbjct: 1467 DTLKDERKAIEKAHKTRLFSASPLPYLILCRMYLQGGVSRLIRGKIVNNIAVGTNPYSDD 1526
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVI----ECIANMINKLYALSGESEVQQAQ 369
W + L+R + D++++D +++ E I + L E + +
Sbjct: 1527 WTRVAHHLLR--NRHFVAGDFASYDSSQEKEILRAACEVIVELCEDLSLPQSERDKHRRV 1584
Query: 370 RYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY 516
R+ +L +L+ + K++ + LPSG LT ++NS+F I + YA+
Sbjct: 1585 RWVLLESLLNSVHYSYGKLYYWSKSLPSGHFLTSIINSIFVNIAMCYAF 1633
[189][TOP]
>UniRef100_B4YYR1 Polyprotein n=1 Tax=Theiler's encephalomyelitis virus
RepID=B4YYR1_9PICO
Length = 2303
Score = 60.1 bits (144), Expect = 1e-07
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI+ R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 2001 KDEIRPLEKIQEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-DVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L G N + DYS FD + + EC +I + + + A+
Sbjct: 2060 WTRYAAELS--GFNYVYDVDYSNFDAWHSTAMFEC---LIKNFFTEQNGFDRRIAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[190][TOP]
>UniRef100_P08544 RNA-directed RNA polymerase 3D-POL n=1 Tax=Theiler's
encephalomyelitis virus (STRAIN BEAN 8386)
RepID=POLG_TMEVB
Length = 2303
Score = 60.1 bits (144), Expect = 1e-07
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 2001 KDEIRPIEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-DVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W L G N + DYS FD + + EC +IN + + + A+
Sbjct: 2060 WTRYAVELS--GFNYVYDVDYSNFDASHSTAMFEC---LINNFFTEQNGFDRRIAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[191][TOP]
>UniRef100_Q9YXM5 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9YXM5_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[192][TOP]
>UniRef100_Q9QM80 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9QM80_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRIMNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[193][TOP]
>UniRef100_Q9QM13 RNA polymerase (Fragment) n=2 Tax=Dicistroviridae
RepID=Q9QM13_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[194][TOP]
>UniRef100_Q9INH0 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9INH0_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[195][TOP]
>UniRef100_Q9ING5 RNA polymerase (Fragment) n=2 Tax=Dicistroviridae
RepID=Q9ING5_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[196][TOP]
>UniRef100_Q9ING4 RNA polymerase (Fragment) n=7 Tax=Kashmir bee virus
RepID=Q9ING4_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[197][TOP]
>UniRef100_Q99HN7 RNA polymerase (Fragment) n=2 Tax=Kashmir bee virus
RepID=Q99HN7_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRIANEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[198][TOP]
>UniRef100_Q99HN5 RNA polymerase (Fragment) n=4 Tax=Viruses RepID=Q99HN5_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRIANEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[199][TOP]
>UniRef100_Q77X60 RNA polymerase (Fragment) n=9 Tax=Kashmir bee virus
RepID=Q77X60_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[200][TOP]
>UniRef100_C3U5A3 Polyprotein (Fragment) n=1 Tax=Saffold virus RepID=C3U5A3_9PICO
Length = 2322
Score = 59.7 bits (143), Expect = 2e-07
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 2025 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 2083
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E +I + L + + +
Sbjct: 2084 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEI---LIENFFTLENGFDKRIGDYFRS 2138
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2139 L--AVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAA 2179
[201][TOP]
>UniRef100_B5LPA0 Polyprotein n=1 Tax=Infectious flacherie virus RepID=B5LPA0_9VIRU
Length = 3085
Score = 59.7 bits (143), Expect = 2e-07
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 3/186 (1%)
Frame = +1
Query: 25 KDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSRE 201
KDEL P K++ G R+F + PL L R+ F Q+ +G NP S +
Sbjct: 2623 KDELRPSEKLRRFGGTRVFSVPPLELVLNSRRFLLPFMDAFQSFPIEAHHAIGLNPNSGD 2682
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYAL--SGESEVQQAQRY 375
W + L+ G + DY + + + + ++I Y E++ A +
Sbjct: 2683 WRRLRDTLLEKGPC-LLQMDYKNYSDAIPKECVAKAFHIIVDYYRKWHCSTVEIENALKT 2741
Query: 376 NMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQ 555
L G VFKVN G+ +G +T VVNSV N IL+ Y + K+A + F+
Sbjct: 2742 LFLDTADAELLVYGD-VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIARRRASEFFK 2800
Query: 556 QTVCLI 573
T ++
Sbjct: 2801 LTYIIV 2806
[202][TOP]
>UniRef100_B4YYP1 Polyprotein n=1 Tax=Theiler's encephalomyelitis virus
RepID=B4YYP1_9PICO
Length = 2303
Score = 59.7 bits (143), Expect = 2e-07
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 2001 KDEIRPIEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTKPGLELGSAIGTDP-DVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L G N + DYS FD + + EC +I+ + + + A+
Sbjct: 2060 WTRYAAELS--GFNYVYDVDYSNFDASHSTAMFEC---LIDNFFTEQNGFDRRIAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[203][TOP]
>UniRef100_B3GTT2 RNA polymerase (Fragment) n=9 Tax=Dicistroviridae
RepID=B3GTT2_9VIRU
Length = 138
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[204][TOP]
>UniRef100_Q9E7S9 RNA polymerase (Fragment) n=8 Tax=Dicistroviridae
RepID=Q9E7S9_9VIRU
Length = 138
Score = 59.3 bits (142), Expect = 2e-07
Identities = 33/102 (32%), Positives = 52/102 (50%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVDQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG LN ++E A++ N+ Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFY 101
[205][TOP]
>UniRef100_B4YYP2 Polyprotein n=1 Tax=Theiler's encephalomyelitis virus
RepID=B4YYP2_9PICO
Length = 2303
Score = 58.9 bits (141), Expect = 3e-07
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P + +
Sbjct: 2001 KDEIRPIEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASRFQTTPGLELGSAIGTDP-NVD 2059
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L N + DYS FD + + EC +I + + + A+
Sbjct: 2060 WTRYAAELSN--FNYVYDVDYSNFDASHSTAMFEC---LIKNFFTEQNGFDKRNAEYLRS 2114
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 2115 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 2155
[206][TOP]
>UniRef100_B4ZF29 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tobacco ringspot
virus RepID=B4ZF29_TRSV
Length = 114
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/59 (50%), Positives = 35/59 (59%)
Frame = +1
Query: 4 LVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVG 180
LV IE PKDE L KI RLF ++PL YNL LR K +F++ L R LPCQ G
Sbjct: 55 LVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLMKKRGHLPCQGG 113
[207][TOP]
>UniRef100_A1XLS5 Polyprotein (Fragment) n=4 Tax=Acute bee paralysis virus
RepID=A1XLS5_9VIRU
Length = 139
Score = 58.5 bits (140), Expect = 3e-07
Identities = 39/135 (28%), Positives = 63/135 (46%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 4 KDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDW 63
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
H R ++ + I D+S FDG LN ++E A++ N+ Y E+ + R+ +L
Sbjct: 64 -HKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGSENAL---IRHVLL 119
Query: 385 MALVGRYAFVGQKVF 429
M + G V+
Sbjct: 120 MDVYNSTHICGDSVY 134
[208][TOP]
>UniRef100_O70710 Polyprotein n=1 Tax=Infectious flacherie virus RepID=O70710_9VIRU
Length = 3085
Score = 58.2 bits (139), Expect = 5e-07
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 3/186 (1%)
Frame = +1
Query: 25 KDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSRE 201
KDEL P K++ G R+F + PL L R+ F Q+ +G NP S +
Sbjct: 2623 KDELRPSEKLRRFGGTRVFSVPPLELVLNSRRFLLPFMDAFQSFPIEAHHAIGLNPNSGD 2682
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYAL--SGESEVQQAQRY 375
W + L+ G + DY + + + + ++I Y E++ A +
Sbjct: 2683 WRRLRDTLLEKGPC-LLQMDYKNYSDAIPKECVAKAFHIIVDYYRKWHCSTVEIENALKT 2741
Query: 376 NMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQ 555
L G VFKVN G+ +G +T VVNSV N IL+ Y + K+ + F+
Sbjct: 2742 LFLDTADAELLVYGD-VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKITRRRASEFFK 2800
Query: 556 QTVCLI 573
T ++
Sbjct: 2801 LTYIIV 2806
[209][TOP]
>UniRef100_UPI000165DAC1 3D n=1 Tax=Bovine rhinovirus 2 RepID=UPI000165DAC1
Length = 467
Score = 57.8 bits (138), Expect = 6e-07
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 1/173 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQVGTNPYSRE 201
KDE+ P K++ G R+ +++PL + +F R+ F + N + VG +P
Sbjct: 163 KDEIRPSEKVRAGKTRIVDVLPLEHIIFSRKYLGRFCAAMHRNYGPNIGSAVGCDP-DVA 221
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W + AI DY+AFD + Q++ +A+ + S + RY +
Sbjct: 222 WQEFGTHFSQYRNVWAI--DYTAFDSCHSTQLMSVMADEV-----FSDAYGFDERARYAV 274
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
+A+ +++ ++ GLPSG + T ++N+V N I + +A ++ P E
Sbjct: 275 KSLCKTVHAYEDKRI-TIDGGLPSGCSATSILNTVLNNIYVMFALKRTYPNTE 326
[210][TOP]
>UniRef100_C3U5A7 Polyprotein (Fragment) n=1 Tax=Saffold virus RepID=C3U5A7_9PICO
Length = 2228
Score = 57.8 bits (138), Expect = 6e-07
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 2025 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 2083
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E +I + + + +
Sbjct: 2084 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEI---LIENFFTVENGFDERTGDYLRS 2138
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2139 L--AVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAA 2179
[211][TOP]
>UniRef100_B0Z3W9 BRV2 polyprotein n=1 Tax=Bovine rhinovirus 2 RepID=B0Z3W9_9PICO
Length = 2280
Score = 57.8 bits (138), Expect = 6e-07
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 1/173 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQVGTNPYSRE 201
KDE+ P K++ G R+ +++PL + +F R+ F + N + VG +P
Sbjct: 1976 KDEIRPSEKVRAGKTRIVDVLPLEHIIFSRKYLGRFCAAMHRNYGPNIGSAVGCDP-DVA 2034
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W + AI DY+AFD + Q++ +A+ + S + RY +
Sbjct: 2035 WQEFGTHFSQYRNVWAI--DYTAFDSCHSTQLMSVMADEV-----FSDAYGFDERARYAV 2087
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
+A+ +++ ++ GLPSG + T ++N+V N I + +A ++ P E
Sbjct: 2088 KSLCKTVHAYEDKRI-TIDGGLPSGCSATSILNTVLNNIYVMFALKRTYPNTE 2139
[212][TOP]
>UniRef100_A9JPF2 Polyprotein n=1 Tax=Saffold virus RepID=A9JPF2_9PICO
Length = 2293
Score = 57.8 bits (138), Expect = 6e-07
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 1991 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 2049
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + +IE + + E+ + +
Sbjct: 2050 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMIEILIENF-----FTTENGFDEGIGDYL 2102
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2103 RSLAVSRHAFEERRVL-VKGGLPSGCAATSMLNTIINNIVIRAA 2145
[213][TOP]
>UniRef100_A3RKR2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Infectious
flacherie virus RepID=A3RKR2_9VIRU
Length = 639
Score = 57.8 bits (138), Expect = 6e-07
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 5/188 (2%)
Frame = +1
Query: 25 KDELLPERKIK-VGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSRE 201
KDEL P K++ G R+F + PL L R+ F Q+ +G NP S +
Sbjct: 177 KDELRPSEKLRRFGGTRVFSVPPLELVLNSRRFLLPFMDAFQSFPIEAHHAIGLNPNSGD 236
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W + L+ G + DY + + EC+A + + + + N
Sbjct: 237 WRRLRDTLLEKGPC-LLQMDYKNYSDAIPK---ECVAKAFHIIVDYYRKWHCTTVEIENA 292
Query: 382 LMALVGRYA----FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR 549
L L A V VFKVN G+ +G +T VVNSV N IL+ Y + K+ +
Sbjct: 293 LKTLFLDTADAELLVYGDVFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKITRRRASEF 352
Query: 550 FQQTVCLI 573
F+ T ++
Sbjct: 353 FKLTYIIV 360
[214][TOP]
>UniRef100_A1XLT7 Polyprotein (Fragment) n=1 Tax=Acute bee paralysis virus
RepID=A1XLT7_9VIRU
Length = 139
Score = 57.8 bits (138), Expect = 6e-07
Identities = 39/135 (28%), Positives = 63/135 (46%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 4 KDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDW 63
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
H R ++ + I D+S FDG LN ++E A++ N+ Y E+ + R+ +L
Sbjct: 64 -HKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IRHVLL 119
Query: 385 MALVGRYAFVGQKVF 429
M + G V+
Sbjct: 120 MDVYNSTHICGDSVY 134
[215][TOP]
>UniRef100_A1XLT6 Polyprotein (Fragment) n=1 Tax=Acute bee paralysis virus
RepID=A1XLT6_9VIRU
Length = 139
Score = 57.8 bits (138), Expect = 6e-07
Identities = 39/135 (28%), Positives = 63/135 (46%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 4 KDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDW 63
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
H R ++ + I D+S FDG LN ++E A++ N+ Y E+ + R+ +L
Sbjct: 64 -HKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IRHVLL 119
Query: 385 MALVGRYAFVGQKVF 429
M + G V+
Sbjct: 120 MNVYNSTHICGDSVY 134
[216][TOP]
>UniRef100_A1XLS0 Polyprotein (Fragment) n=16 Tax=Acute bee paralysis virus
RepID=A1XLS0_9VIRU
Length = 139
Score = 57.8 bits (138), Expect = 6e-07
Identities = 39/135 (28%), Positives = 63/135 (46%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 4 KDERRPIEKVDQLKTRVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDW 63
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
H R ++ + I D+S FDG LN ++E A++ N+ Y E+ + R+ +L
Sbjct: 64 -HKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IRHVLL 119
Query: 385 MALVGRYAFVGQKVF 429
M + G V+
Sbjct: 120 MDVYNSTHICGDSVY 134
[217][TOP]
>UniRef100_B4YYR0 Polyprotein (Fragment) n=1 Tax=Vilyuisk human encephalomyelitis virus
RepID=B4YYR0_9PICO
Length = 1381
Score = 57.4 bits (137), Expect = 8e-07
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P + ++ RQ F QT L +GT+P +
Sbjct: 1079 KDEIRPIEKIHEAKTRIVDVPPFAHCIWGRQLLGRFASKFQTRPGLELGSAIGTDP-DVD 1137
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W A L N + DYS FD + + EC +I + + + A+
Sbjct: 1138 WTRYAAELSN--FNYVYDVDYSNFDASHSTAMFEC---LIKNFFTEQNGFDKRIAEYLRS 1192
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N ++IR A
Sbjct: 1193 L--AVSRHAYEDRRVL-IRGGLPSGCAATSMLNTIMNNVIIRAA 1233
[218][TOP]
>UniRef100_A7KCA0 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-A
RepID=A7KCA0_9VIRU
Length = 1689
Score = 57.4 bits (137), Expect = 8e-07
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 1/175 (0%)
Frame = +1
Query: 19 CPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSR 198
C KDE K KV R+FE + L +R+ + L C VG N
Sbjct: 1351 CVKDEATKIGKEKV---RVFEAADWAFQLIVRKYFLPIARMLSLFPLTSECAVGVNAQGP 1407
Query: 199 EWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYN 378
EW + + + G + DYS +D + AQ+I + + G+ V +
Sbjct: 1408 EWDQLARHMKKFGADRIFAGDYSKYDLRMPAQLILAAFKCLIDIAKTCGQYSVDDIKIMQ 1467
Query: 379 MLMALVGRYAFVGQKVFKVNCGL-PSGFALTVVVNSVFNEILIRYAYRKLAPKPE 540
+ + ++CG PSG LTV +N + N +L+R AY + P E
Sbjct: 1468 GVATEIAYSCVSYNGDLIIHCGSNPSGQNLTVYINCIVNSLLLRCAYYHMYPAAE 1522
[219][TOP]
>UniRef100_Q7T7T5 Polyprotein n=1 Tax=Heterosigma akashiwo RNA virus SOG263
RepID=Q7T7T5_HARNA
Length = 2581
Score = 57.0 bits (136), Expect = 1e-06
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 1/172 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE L K+ R F ++ + +R+ C Q L+ N +GTN + ++W
Sbjct: 1364 KDEALRIGKVP----RTFYAASMNVIMAVRKYFCPVLQALKANPIHAEIAIGTNAFGKDW 1419
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSG-ESEVQQAQRYNM 381
I + L T I DYS+FD NA + C ++ L S S+V + +
Sbjct: 1420 ADIYSHLASHSTETVIAGDYSSFDMSHNADAVRCAMQVLLDLIDESSLYSDVDKLAARTL 1479
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP 537
+ +L + +V + SG LT ++S N+I +R ++ + +P
Sbjct: 1480 VESLGQSFLAFDGTWMQVIGWVMSGVPLTAELSSTLNQIYMRVVWKVVTQRP 1531
[220][TOP]
>UniRef100_Q5S2C9 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q5S2C9_9VIRU
Length = 138
Score = 57.0 bits (136), Expect = 1e-06
Identities = 32/102 (31%), Positives = 50/102 (49%)
Frame = +1
Query: 28 DELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWG 207
DE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 1 DERRPIEKVNQLKTRVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWS 60
Query: 208 HILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLY 333
+ +L + G N+ I D+S FDG N ++E A++ N Y
Sbjct: 61 KTVRKLTKFG-NKVIAGDFSTFDGSXNVCIMEKFADLANDFY 101
[221][TOP]
>UniRef100_C3U5A5 Polyprotein (Fragment) n=1 Tax=Saffold virus RepID=C3U5A5_9PICO
Length = 2318
Score = 57.0 bits (136), Expect = 1e-06
Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 2025 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASKFQTNPGLDLGSAIGTDP-DTD 2083
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E +I + + + +
Sbjct: 2084 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEI---LIENFFTVENGFDERIGDYLRS 2138
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2139 L--AVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAA 2179
[222][TOP]
>UniRef100_B9A8E0 Non-structural polyprotein n=1 Tax=Chaetoceros socialis f. radians
RNA virus RepID=B9A8E0_9VIRU
Length = 1690
Score = 56.6 bits (135), Expect = 1e-06
Identities = 48/185 (25%), Positives = 79/185 (42%)
Frame = +1
Query: 19 CPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSR 198
C KDE K K R+F+ P+ LR+ FL ++ C VG N
Sbjct: 1336 CTKDEPTKMSKTKT---RVFQAAPVSLQYNLRRSCLPVWAFLSSSPIYSECAVGVNSQGC 1392
Query: 199 EWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYN 378
W + L GTN + D+ A+D ++A+++ ++ ++ L+G S+ +
Sbjct: 1393 AWNELDRFLTSFGTNRIVAGDFKAYDQHMSARMVLISYYIVEQIAKLAGYSDEECKLIRG 1452
Query: 379 MLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQ 558
M + + ++ K+ PSG TV NS+ N I R + L P+ E FQ
Sbjct: 1453 MATDVAYPMMSLNGELIKLFGSNPSGQNGTVYTNSIVNSIYQRCVFFTLYPEYEG-NFQD 1511
Query: 559 TVCLI 573
V L+
Sbjct: 1512 VVHLL 1516
[223][TOP]
>UniRef100_A9LNM7 Polyprotein n=1 Tax=Hepatitis A virus RepID=A9LNM7_9PICO
Length = 2225
Score = 56.6 bits (135), Expect = 1e-06
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1895 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1954
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L A
Sbjct: 1955 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSELSATPSHFGT 2012
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2013 A------LINTIIYSKHLLYNCCYHVYGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2065
[224][TOP]
>UniRef100_A1XLS2 Polyprotein (Fragment) n=1 Tax=Acute bee paralysis virus
RepID=A1XLS2_9VIRU
Length = 139
Score = 56.6 bits (135), Expect = 1e-06
Identities = 39/135 (28%), Positives = 63/135 (46%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREW 204
KDE P K+ R+F P+ +++ R F L NR +GTN YS++W
Sbjct: 4 KDERRPIEKVDQLKTRVFFNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDW 63
Query: 205 GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNML 384
H R ++ + I D+S FDG LN ++E A++ N+ Y E+ + R+ +L
Sbjct: 64 -HKTVRKLKTMGPKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENAL---IRHVLL 119
Query: 385 MALVGRYAFVGQKVF 429
M + G V+
Sbjct: 120 MDVYNSTHICGDSVY 134
[225][TOP]
>UniRef100_UPI000175DA94 protein 3D n=1 Tax=Human TMEV-like cardiovirus RepID=UPI000175DA94
Length = 461
Score = 56.2 bits (134), Expect = 2e-06
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 159 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 217
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E +I + + +
Sbjct: 218 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEI---LIENFFTTENGFDERIGDYLRS 272
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 273 L--AVSRHAFEERRVL-VKGGLPSGCAATSMLNTIINNIVIRAA 313
[226][TOP]
>UniRef100_UPI000172CDE8 protein 3D n=1 Tax=Saffold virus RepID=UPI000172CDE8
Length = 461
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 159 KDEIRPVEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 217
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E + + E+ + +
Sbjct: 218 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEILIENF-----FTPENGFDERIGDYL 270
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 271 RSLAVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAA 313
[227][TOP]
>UniRef100_Q8JR20 Polypeptide n=1 Tax=Foot-and-mouth disease virus - type O
RepID=Q8JR20_9PICO
Length = 2332
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAF-TQFLQTNRHRLPCQVGTNPYSRE 201
KDE+ P K++ G R+ +++P+ + L+ R F Q N R+ VG NP +
Sbjct: 2026 KDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPRIGSAVGCNP-DVD 2084
Query: 202 WGHILARLMRPGTNEAI-----NCDYSAFDGLLNAQVIEC-IANMINKLYALSGESEVQQ 363
W R GT+ A + DYSAFD + + + + N + +E
Sbjct: 2085 W-------QRYGTHFAQYRNVWDVDYSAFDANHCSDAMNIMLEEVFNTEFGFHPNAEW-- 2135
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
+L LV K V G+PSG + T ++N++ N I + YA R+
Sbjct: 2136 -----ILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRR 2183
[228][TOP]
>UniRef100_Q5PXZ5 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q5PXZ5_9VIRU
Length = 130
Score = 56.2 bits (134), Expect = 2e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +1
Query: 70 RLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEA 249
R+F P+ +++ R F L NR +GTN YS++W + +L + G N+
Sbjct: 6 RVFSXGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWNKTVRKLTKFG-NKV 64
Query: 250 INCDYSAFDGLLNAQVIECIANMINKLY 333
I D+S FDG LN ++E A++ N+ Y
Sbjct: 65 IAGDFSTFDGSLNVCIMEKFADLANEFY 92
[229][TOP]
>UniRef100_C0MHL9 Polyprotein n=1 Tax=Saffold virus RepID=C0MHL9_9PICO
Length = 2295
Score = 56.2 bits (134), Expect = 2e-06
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 1993 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 2051
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E +I + + +
Sbjct: 2052 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEV---LIENFFTTENGFDERIGDYLRS 2106
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2107 L--AVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAA 2147
[230][TOP]
>UniRef100_B4ZF27 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Potato black
ringspot virus RepID=B4ZF27_9SECO
Length = 117
Score = 56.2 bits (134), Expect = 2e-06
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKI--KVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQ 174
E+V IECPKDELL RK+ K+G R FEI+ L N+ R+K ++ FL R LPCQ
Sbjct: 56 EMVCIECPKDELLVPRKVLEKLGT-RNFEILELPKNMLFRKKFLSWASFLSEMRWCLPCQ 114
Query: 175 VG 180
VG
Sbjct: 115 VG 116
[231][TOP]
>UniRef100_B3FRR2 Polyprotein n=1 Tax=Human TMEV-like cardiovirus RepID=B3FRR2_9PICO
Length = 2293
Score = 56.2 bits (134), Expect = 2e-06
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 1991 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 2049
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E +I + + +
Sbjct: 2050 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEI---LIENFFTTENGFDERIGDYLRS 2104
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2105 L--AVSRHAFEERRVL-VKGGLPSGCAATSMLNTIINNIVIRAA 2145
[232][TOP]
>UniRef100_A4ZKN2 Viral polyprotein n=1 Tax=Saffold virus RepID=A4ZKN2_9PICO
Length = 2296
Score = 56.2 bits (134), Expect = 2e-06
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 1994 KDEIRPVEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DTD 2052
Query: 202 WGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNM 381
W +L++ + DYS FD + + E + + E+ + +
Sbjct: 2053 WTAFAFQLLQ--YKYVYDVDYSNFDASHSTAMFEILIENF-----FTPENGFDERIGDYL 2105
Query: 382 LMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
V R+AF ++V V GLPSG A T ++N++ N I+IR A
Sbjct: 2106 RSLAVSRHAFEERRVL-VRGGLPSGCAATSMLNTIINNIVIRAA 2148
[233][TOP]
>UniRef100_A6XP83 Polyprotein n=1 Tax=Foot-and-mouth disease virus - type Asia 1
RepID=A6XP83_9PICO
Length = 2329
Score = 55.8 bits (133), Expect = 2e-06
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAF-TQFLQTNRHRLPCQVGTNPYSRE 201
KDE+LP K++ G R+ +++P+ + L+ R F Q N ++ VG NP +
Sbjct: 2023 KDEILPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVD 2081
Query: 202 WGHILARLMRPGTNEA-----INCDYSAFDGLLNAQVIECI-ANMINKLYALSGESEVQQ 363
W R GT+ A + DYSAFD + + + + N + +E
Sbjct: 2082 W-------QRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFNTDFGFHPNAEW-- 2132
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
+L LV K V G+PSG + T ++N++ N I + YA R+
Sbjct: 2133 -----ILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRR 2180
[234][TOP]
>UniRef100_Q9QAG7 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q9QAG7_9VIRU
Length = 182
Score = 55.5 bits (132), Expect = 3e-06
Identities = 35/120 (29%), Positives = 59/120 (49%)
Frame = +1
Query: 175 VGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESE 354
+GTN YS++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y E+
Sbjct: 3 IGTNVYSQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENA 61
Query: 355 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ R+ +LM + V+ + PSG T +N N + +R + A K
Sbjct: 62 L---IRHVLLMDVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATK 118
[235][TOP]
>UniRef100_Q995Q1 RNA polymerase (Fragment) n=3 Tax=Kashmir bee virus
RepID=Q995Q1_9VIRU
Length = 182
Score = 55.5 bits (132), Expect = 3e-06
Identities = 35/120 (29%), Positives = 59/120 (49%)
Frame = +1
Query: 175 VGTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESE 354
+GTN YS++W + +L + G N+ I D+S FDG LN ++E A++ N+ Y E+
Sbjct: 4 IGTNVYSQDWSKTVRKLTKFG-NKVIAGDFSTFDGSLNVCIMEKFADLANEFYDDGPENA 62
Query: 355 VQQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
+ R+ +LM + V+ + PSG T +N N + +R + A K
Sbjct: 63 L---IRHVLLMDVYNSVHICNDSVYMMTHSQPSGNPATTPLNCFINSMGLRMCFSICATK 119
[236][TOP]
>UniRef100_Q8BDF5 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=Q8BDF5_9VIRU
Length = 128
Score = 55.5 bits (132), Expect = 3e-06
Identities = 35/127 (27%), Positives = 61/127 (48%)
Frame = +1
Query: 70 RLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEA 249
R+F P+ +++ R F L NR +GTN YS++W + +L + G ++
Sbjct: 5 RVFSNGPMDFSITFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWSKTVRKLKQMG-SKV 63
Query: 250 INCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQRYNMLMALVGRYAFVGQKVF 429
I D+S FDG LN ++E A++ N+ Y E+ + R+ +LM + G V+
Sbjct: 64 IAGDFSTFDGSLNVCIMEKFADLANEFYNDGPENAL---IRHVLLMDVYNSVHICGDSVY 120
Query: 430 KVNCGLP 450
+ P
Sbjct: 121 MMTHSQP 127
[237][TOP]
>UniRef100_Q1KL66 Polyprotein n=1 Tax=Foot-and-mouth disease virus - type O
RepID=Q1KL66_9PICO
Length = 2332
Score = 55.5 bits (132), Expect = 3e-06
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAF-TQFLQTNRHRLPCQVGTNPYSRE 201
KDE+ P K++ G R+ +++P+ + L+ R F Q N R+ VG NP +
Sbjct: 2026 KDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPRIGSAVGCNP-DVD 2084
Query: 202 WGHILARLMRPGTNEAI-----NCDYSAFDGLLNAQVIECI-ANMINKLYALSGESEVQQ 363
W R GT+ A + DYSAFD + + + + N + +E
Sbjct: 2085 W-------QRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFNTEFGFHPNAEW-- 2135
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
+L LV K V G+PSG + T ++N++ N I + YA R+
Sbjct: 2136 -----ILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRR 2183
[238][TOP]
>UniRef100_A5HTW1 RNA polymerase (Fragment) n=1 Tax=Kashmir bee virus
RepID=A5HTW1_9VIRU
Length = 124
Score = 55.5 bits (132), Expect = 3e-06
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +1
Query: 70 RLFEIMPLHYNLFLRQKTCAFTQFLQTNRHRLPCQVGTNPYSREWGHILARLMRPGTNEA 249
R+F P+ +++ R F L NR +GTN YS++W + +L + G N+
Sbjct: 8 RVFSNGPMDFSIAFRMYYLGFIAHLMENRITNEVSIGTNVYSQDWSKTVRKLTKFG-NKV 66
Query: 250 INCDYSAFDGLLNAQVIECIANMINKLY 333
I D+S FDG LN ++E A++ N+ Y
Sbjct: 67 IAGDFSTFDGSLNVCIMEKFADLANEFY 94
[239][TOP]
>UniRef100_B5SXL8 Polyprotein n=1 Tax=Rat theilovirus 1 RepID=B5SXL8_9PICO
Length = 2307
Score = 55.1 bits (131), Expect = 4e-06
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 2005 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DVD 2063
Query: 202 W---GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
W H LA + DYS FD + + E +I + + + + +
Sbjct: 2064 WTVFAHQLAEF-----KYVYDVDYSNFDASHSTAIFEI---LIQEFFTPQNGFDPRIGEY 2115
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N I+IR A
Sbjct: 2116 LRSL--AVSRHAYEDRRVL-IRGGLPSGCAATSMINTIINNIVIRAA 2159
[240][TOP]
>UniRef100_B3VTU7 Polyprotein n=1 Tax=Rat theilovirus 1 RepID=B3VTU7_9PICO
Length = 2307
Score = 55.1 bits (131), Expect = 4e-06
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 2005 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DVD 2063
Query: 202 W---GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
W H LA + DYS FD + + E +I + + + + +
Sbjct: 2064 WTVFAHQLAEF-----KYVYDVDYSNFDASHSTAIFEI---LIQEFFTPQNGFDPRIGEY 2115
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N I+IR A
Sbjct: 2116 LRSL--AVSRHAYEDRRVL-IRGGLPSGCAATSMINTIINNIVIRAA 2159
[241][TOP]
>UniRef100_Q67825 RNA-directed RNA polymerase 3D-POL n=1 Tax=Human hepatitis A virus
Hu/Germany/GBM/1976 RepID=POLG_HAVGB
Length = 2227
Score = 55.1 bits (131), Expect = 4e-06
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGT 2014
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2015 A------LINTIIYSKHLLYNCCYHVYGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2067
[242][TOP]
>UniRef100_UPI0000163E76 3D mature peptide n=1 Tax=Hepatitis A virus RepID=UPI0000163E76
Length = 489
Score = 54.7 bits (130), Expect = 5e-06
Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y++ R + N +
Sbjct: 159 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYSILCRMYWGPAISYFHLNPGFHTGVAI 218
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 219 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGT 276
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N + + Y + K+ K
Sbjct: 277 A------LINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNVNLYYVFSKIFGK 329
[243][TOP]
>UniRef100_Q9WMA3 Polyprotein n=1 Tax=Hepatitis A virus RepID=Q9WMA3_9PICO
Length = 2227
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGT 2014
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2015 A------LINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2067
[244][TOP]
>UniRef100_Q9WMA1 Polyprotein n=1 Tax=Hepatitis A virus RepID=Q9WMA1_9PICO
Length = 2227
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGGIMSELSGTPSHFGT 2014
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2015 A------LINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2067
[245][TOP]
>UniRef100_Q9WMA0 Polyprotein n=1 Tax=Hepatitis A virus RepID=Q9WMA0_9PICO
Length = 2227
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGGIMSELSGTPSHFGT 2014
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2015 A------LINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2067
[246][TOP]
>UniRef100_Q9WM99 Polyprotein n=1 Tax=Hepatitis A virus RepID=Q9WM99_9PICO
Length = 2227
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGT 2014
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2015 A------LINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2067
[247][TOP]
>UniRef100_Q8QV03 Polyprotein n=1 Tax=Hepatitis A virus RepID=Q8QV03_9PICO
Length = 2227
Score = 54.7 bits (130), Expect = 5e-06
Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 7/185 (3%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKIRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++ LSG
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSE---LSGTPS- 2010
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNC------GLPSGFALTVVVNSVFNEILIRYAYR 519
+ AL+ + K NC +PSG T ++NS+ N I + Y +
Sbjct: 2011 ------HFGTALIN--TIIYSKHLPYNCCYHVCGSMPSGSPCTALLNSIVNNINLYYVFS 2062
Query: 520 KLAPK 534
K+ K
Sbjct: 2063 KIFGK 2067
[248][TOP]
>UniRef100_Q80IV2 Polyprotein n=1 Tax=Theiler's-like virus of rats RepID=Q80IV2_9PICO
Length = 2307
Score = 54.7 bits (130), Expect = 5e-06
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 4/167 (2%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTNRH-RLPCQVGTNPYSRE 201
KDE+ P KI R+ ++ P H+ ++ RQ F QTN L +GT+P +
Sbjct: 2005 KDEIRPIEKIHEAKTRIVDVPPFHHCIWGRQLLGRFASRFQTNPGLDLGSAIGTDP-DVD 2063
Query: 202 W---GHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEVQQAQR 372
W H LA + DYS FD + + E +I + + + + +
Sbjct: 2064 WTVFAHQLAEF-----KYIYDVDYSNFDASHSTAIFEI---LIQEFFTPQNGFDPRIGEY 2115
Query: 373 YNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYA 513
L V R+A+ ++V + GLPSG A T ++N++ N I+IR A
Sbjct: 2116 LRSL--AVSRHAYEDRRVL-IRGGLPSGCAATSMINTIINNIVIRAA 2159
[249][TOP]
>UniRef100_Q7TD06 Polyprotein n=1 Tax=Foot-and-mouth disease virus - type O
RepID=Q7TD06_9PICO
Length = 2332
Score = 54.7 bits (130), Expect = 5e-06
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 7/173 (4%)
Frame = +1
Query: 25 KDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAF-TQFLQTNRHRLPCQVGTNPYSRE 201
KDE+ P K++ G R+ +++P+ + L+ R F Q N ++ VG NP +
Sbjct: 2026 KDEIRPMEKVRAGKTRIVDVLPVEHTLYTRMMIGRFCAQMHSNNGPQIGSAVGCNP-DVD 2084
Query: 202 WGHILARLMRPGTNEA-----INCDYSAFDGLLNAQVIECI-ANMINKLYALSGESEVQQ 363
W R GT+ A + DYSAFD + + + + N + +E
Sbjct: 2085 W-------QRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFNTDFGFHPNAEW-- 2135
Query: 364 AQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK 522
+L LV K V G+PSG + T ++N++ N I + YA R+
Sbjct: 2136 -----ILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRR 2183
[250][TOP]
>UniRef100_Q71FG9 Polyprotein n=1 Tax=Hepatitis A virus RepID=Q71FG9_9PICO
Length = 2227
Score = 54.7 bits (130), Expect = 5e-06
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Frame = +1
Query: 1 ELVVIECPKDELLPERKIKVGACRLFEIMPLHYNLFLRQKTCAFTQFLQTN-RHRLPCQV 177
++V CPKDEL P K+ R + PL Y + R + N +
Sbjct: 1897 DVVFTTCPKDELRPLEKVLESKTRAIDACPLDYTILCRMYWGPAISYFHLNPGFHTGVAI 1956
Query: 178 GTNPYSREWGHILARLMRPGTNEAINCDYSAFDGLLNAQVIECIANMINKLYALSGESEV 357
G +P R+W + ++R G + ++ D+SAFD L+ +I ++++L
Sbjct: 1957 GIDP-DRQWDELFKTMIRFG-DVGLDLDFSAFDASLSPFMIREAGRIMSELSGTPSHFGT 2014
Query: 358 QQAQRYNMLMALVGRYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK 534
++ ++ + + V +PSG T ++NS+ N I + Y + K+ K
Sbjct: 2015 A------LINTIIYSKHLLYNCCYHVCGSMPSGSPCTALLNSIINNINLYYVFSKIFGK 2067