[UP]
[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 318 bits (816), Expect = 1e-85
Identities = 153/191 (80%), Positives = 167/191 (87%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAE
Sbjct: 353 SVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAE 412
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K
Sbjct: 413 KKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKS 472
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q R
Sbjct: 473 KFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLR 532
Query: 542 TWAFCESFHSS 574
TWAFCE+FHS+
Sbjct: 533 TWAFCEAFHSA 543
[2][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 318 bits (816), Expect = 1e-85
Identities = 150/191 (78%), Positives = 167/191 (87%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAE
Sbjct: 353 SVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAE 412
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K
Sbjct: 413 KKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKS 472
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFR
Sbjct: 473 KFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFR 532
Query: 542 TWAFCESFHSS 574
TWAFCE+FHS+
Sbjct: 533 TWAFCEAFHSA 543
[3][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 318 bits (816), Expect = 1e-85
Identities = 153/191 (80%), Positives = 167/191 (87%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAE
Sbjct: 1795 SVFNEILIRYAYKKLAPAPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAE 1854
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K
Sbjct: 1855 KKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKS 1914
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q R
Sbjct: 1915 KFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLR 1974
Query: 542 TWAFCESFHSS 574
TWAFCE+FHS+
Sbjct: 1975 TWAFCEAFHSA 1985
[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 318 bits (816), Expect = 1e-85
Identities = 150/191 (78%), Positives = 167/191 (87%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEILIRYAY+KLAPKPE+ RF Q VCL+VYGDDNLISV+PS ASWF GEAIR+TLAE
Sbjct: 1793 SVFNEILIRYAYKKLAPKPERNRFNQVVCLLVYGDDNLISVSPSIASWFTGEAIRITLAE 1852
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K
Sbjct: 1853 KKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKS 1912
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F++ LPL QFR
Sbjct: 1913 KFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFR 1972
Query: 542 TWAFCESFHSS 574
TWAFCE+FHS+
Sbjct: 1973 TWAFCEAFHSA 1983
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 285 bits (729), Expect = 2e-75
Identities = 138/192 (71%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAE
Sbjct: 351 SIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAE 410
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSK 358
K++KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K
Sbjct: 411 KRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQK 470
Query: 359 DKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQF 538
KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQF
Sbjct: 471 SKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQF 530
Query: 539 RTWAFCESFHSS 574
RTWAFCE+FHS+
Sbjct: 531 RTWAFCEAFHSA 542
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 285 bits (729), Expect = 2e-75
Identities = 138/192 (71%), Positives = 162/192 (84%), Gaps = 1/192 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNEILIRYAY+ LAP PEK F VCL+VYGDDNLISV+P+ ASWF GEAIRVTLAE
Sbjct: 1777 SIFNEILIRYAYKTLAPTPEKNSFGINVCLLVYGDDNLISVSPAVASWFTGEAIRVTLAE 1836
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSK 358
K++KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K
Sbjct: 1837 KRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQK 1896
Query: 359 DKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQF 538
KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ARLP+ VDQF
Sbjct: 1897 SKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQF 1956
Query: 539 RTWAFCESFHSS 574
RTWAFCE+FHS+
Sbjct: 1957 RTWAFCEAFHSA 1968
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 196 bits (497), Expect = 1e-48
Identities = 103/191 (53%), Positives = 130/191 (68%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +
Sbjct: 361 SVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKK 420
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP
Sbjct: 421 KNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQ 480
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
K Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L +
Sbjct: 481 KMPKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYY 539
Query: 542 TWAFCESFHSS 574
TWA E+FH S
Sbjct: 540 TWADREAFHMS 550
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 196 bits (497), Expect = 1e-48
Identities = 103/191 (53%), Positives = 130/191 (68%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +
Sbjct: 1851 SVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKK 1910
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP
Sbjct: 1911 KNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQ 1970
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
K Q VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L +
Sbjct: 1971 KMPKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYY 2029
Query: 542 TWAFCESFHSS 574
TWA E+FH S
Sbjct: 2030 TWADREAFHMS 2040
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 167 bits (424), Expect = 4e-40
Identities = 89/189 (47%), Positives = 114/189 (60%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LIRY YR P+P F Q VCLIVYGDDNLISV P +FNG+ I+ LA+
Sbjct: 628 SLFNEMLIRYVYRVTVPRPLVNNFNQEVCLIVYGDDNLISVKPDTMKYFNGDRIKEVLAK 687
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AIFSSLY++ P
Sbjct: 688 FKVTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP--- 744
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ + + L LN VAL ELYLHND ++F VR+F+V ++
Sbjct: 745 -------------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLP 791
Query: 542 TWAFCESFH 568
W C +FH
Sbjct: 792 QWRHCAAFH 800
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 167 bits (423), Expect = 5e-40
Identities = 88/189 (46%), Positives = 116/189 (61%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+
Sbjct: 354 SLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAK 413
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 414 YKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--- 470
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 471 -------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLP 517
Query: 542 TWAFCESFH 568
W C SFH
Sbjct: 518 QWRHCASFH 526
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 167 bits (423), Expect = 5e-40
Identities = 88/189 (46%), Positives = 116/189 (61%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+
Sbjct: 628 SLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAK 687
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 688 YKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--- 744
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 745 -------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLP 791
Query: 542 TWAFCESFH 568
W C SFH
Sbjct: 792 QWRHCASFH 800
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 167 bits (423), Expect = 5e-40
Identities = 88/189 (46%), Positives = 116/189 (61%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA+
Sbjct: 1840 SLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAK 1899
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 1900 YKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--- 1956
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ ++++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 1957 -------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLP 2003
Query: 542 TWAFCESFH 568
W C SFH
Sbjct: 2004 QWRHCASFH 2012
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 167 bits (422), Expect = 7e-40
Identities = 88/189 (46%), Positives = 114/189 (60%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA
Sbjct: 628 SLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAR 687
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 688 YKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--- 744
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ +++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 745 -------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLP 791
Query: 542 TWAFCESFH 568
W C SFH
Sbjct: 792 QWRHCASFH 800
[14][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 166 bits (420), Expect = 1e-39
Identities = 88/189 (46%), Positives = 114/189 (60%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LIRY YR P+P F+Q VCLIVYGDDNLIS+ P +FNGE I+ LA
Sbjct: 628 SLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAN 687
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KV ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 688 IKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--- 744
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ +++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 745 -------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLP 791
Query: 542 TWAFCESFH 568
W C SFH
Sbjct: 792 QWRHCASFH 800
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 162 bits (410), Expect = 2e-38
Identities = 85/189 (44%), Positives = 114/189 (60%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+LI Y YR P+ F+Q VCLIVYGDDNLIS+ P +FNGE I+ TLA+
Sbjct: 354 SLFNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKSTLAK 413
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
++ ITDGSDK++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 414 YRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP--- 470
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
+ +++ L LN VAL ELYLH D ++F VR+F+V ++
Sbjct: 471 -------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLP 517
Query: 542 TWAFCESFH 568
W C SFH
Sbjct: 518 QWRHCASFH 526
[16][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 155 bits (393), Expect = 2e-36
Identities = 86/174 (49%), Positives = 107/174 (61%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEILIRY Y+ + P PE RF+ V L+VYGDDNLI+V PS F GE I+ TLA
Sbjct: 1852 SVFNEILIRYVYKTVIPSPEFNRFETFVTLVVYGDDNLIAVDPSMQKIFTGEVIKKTLAR 1911
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
KK+ ITDGSDK +P +E KP +LDFLKR FL D+G + LD T I+SSL +L
Sbjct: 1912 KKITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR---- 1967
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL 523
S + D I L NV AL ELY D +EF +R+F++ RLP+
Sbjct: 1968 -----------SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPM 2010
[17][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 150 bits (378), Expect = 9e-35
Identities = 82/191 (42%), Positives = 111/191 (58%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNEIL+R Y+ + P + F + V L+VYGDDNLI+V PS FNG+ I+ T+A+
Sbjct: 1549 SIFNEILVRMVYKTVVPGVPRNHFNEYVTLLVYGDDNLIAVDPSILEVFNGDVIKKTMAK 1608
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
+V ITDGSDK +PT+ KP LDFLKR F D G + APLD TAI+SSL+W+
Sbjct: 1609 WRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ 1668
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQFR 541
DV+ L N AL+E++ H D EF +RSF+V+++P D
Sbjct: 1669 ---------------DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LP 1712
Query: 542 TWAFCESFHSS 574
TW FH +
Sbjct: 1713 TWDQARCFHEA 1723
[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 141 bits (356), Expect = 3e-32
Identities = 77/190 (40%), Positives = 113/190 (59%), Gaps = 1/190 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+F E+L+RY ++K+ P K F + V LI YGDDN+ +VA S +F G+A+++ +A+
Sbjct: 1804 SIFKELLMRYCFKKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDALKMQMAK 1863
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
V ITDG DK TI +P EL+FLKR F++ G+I APL+ +I SSL ++
Sbjct: 1864 LGVTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR---- 1919
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQF 538
S D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP +
Sbjct: 1920 -----------SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKEL 1968
Query: 539 RTWAFCESFH 568
TW ESFH
Sbjct: 1969 TTWFQAESFH 1978
[19][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 135 bits (339), Expect = 3e-30
Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +A
Sbjct: 344 SIFNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMAN 403
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 404 LGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---- 459
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQF 538
S D++++LV NVN AL+ELYLH D + + VR F++ +LP +
Sbjct: 460 -----------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKEL 508
Query: 539 RTWAFCESFH 568
TW + FH
Sbjct: 509 TTWYEAQIFH 518
[20][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 135 bits (339), Expect = 3e-30
Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+L+RY Y+K+ P + F + V LI YGDDN+ +V+ S + F G+A++ +A
Sbjct: 1803 SIFNELLMRYCYKKIVPPIYRECFDRCVVLITYGDDNVFTVSQSIMTSFTGDALKAEMAN 1862
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 1863 LGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---- 1918
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQF 538
S D++++LV NVN AL+ELYLH D + + VR F++ +LP +
Sbjct: 1919 -----------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKEL 1967
Query: 539 RTWAFCESFH 568
TW + FH
Sbjct: 1968 TTWYEAQIFH 1977
[21][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 134 bits (336), Expect = 6e-30
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 1/190 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE+L+RY ++K+ P + F + V LI YGDDN+ +V+ S F G+A++ +A
Sbjct: 1805 SIFNELLMRYCFKKIVPPVYRECFDRCVVLITYGDDNVFTVSQSIMESFTGDALKAEMAN 1864
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
V ITDG DK TI +P EL+FLKR K + G+I APL+ +I SSL ++
Sbjct: 1865 VGVTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR---- 1920
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPL-LVDQF 538
S D++++LV NVN AL+EL+LH D + F VR+F++ +LP +
Sbjct: 1921 -----------SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKEL 1969
Query: 539 RTWAFCESFH 568
TW ++FH
Sbjct: 1970 TTWYQAQTFH 1979
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 131 bits (330), Expect = 3e-29
Identities = 74/168 (44%), Positives = 97/168 (57%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR LA+
Sbjct: 345 SIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLAD 404
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T
Sbjct: 405 VNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAG 464
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 505
H L NV+ AL+ELYLH + F +R F+
Sbjct: 465 SIHI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY 497
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 131 bits (330), Expect = 3e-29
Identities = 74/168 (44%), Positives = 97/168 (57%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNE LIR+ +R + RF Q V L++YGDDNLI+V P FNGE IR LA+
Sbjct: 1732 SIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIYGDDNLIAVHPDYLPHFNGEIIRTRLAD 1791
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T
Sbjct: 1792 VNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAG 1851
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 505
H L NV+ AL+ELYLH + F +R F+
Sbjct: 1852 SIHI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY 1884
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 118 bits (295), Expect = 4e-25
Identities = 68/174 (39%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNEILIRY YRK+ P P F + V L+VYGDDNL+++ +F+G I+ +A
Sbjct: 1783 SIFNEILIRYVYRKVTPAPACNFFNKYVRLMVYGDDNLLTIKEEVIPFFDGPVIKREMAS 1842
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 361
+ ITDG+DK + T+E KP L+FLKR F + G++ APLD T++++ L++L +
Sbjct: 1843 VGITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTSMYTRLFYLPLALM 1902
Query: 362 KFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVRSFFVARLP 520
F + NV L E+ LH N +EF RVR+F+V++ P
Sbjct: 1903 AFIPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRNFYVSKAP 1943
[25][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 111 bits (277), Expect = 5e-23
Identities = 53/68 (77%), Positives = 61/68 (89%)
Frame = +2
Query: 11 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 190
+EILIRYAY+KLAPKP++ F +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+
Sbjct: 9 HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68
Query: 191 KITDGSDK 214
KITDGSDK
Sbjct: 69 KITDGSDK 76
[26][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 107 bits (266), Expect = 9e-22
Identities = 51/62 (82%), Positives = 56/62 (90%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF GEAIR+TLAE
Sbjct: 11 SVFNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFTGEAIRITLAE 70
Query: 182 KK 187
KK
Sbjct: 71 KK 72
[27][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 103 bits (257), Expect = 9e-21
Identities = 65/186 (34%), Positives = 99/186 (53%), Gaps = 2/186 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNEIL+R AYR L P E+ F V LIVYGDDN++ + P+ S FNG I+ + E
Sbjct: 1908 SIFNEILVRCAYRSLVPDIERPFFSNNVVLIVYGDDNVLGIHPNIESVFNGNTIKAYMKE 1967
Query: 182 K-KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPS 355
+ +KITDG+DK +P I+ +P + +FLKR + K G+ +APL T+IFS L ++
Sbjct: 1968 ELGIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIFSCLRYV--- 2024
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 535
+ Y + +++ NV +L E LH R+ F P V++
Sbjct: 2025 --------RLQNYDWQAPLLQ----NVQGSLYEASLHGPEMH-DRIYKHFAMHFPKWVEE 2071
Query: 536 FRTWAF 553
+ +
Sbjct: 2072 HELYTY 2077
[28][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 102 bits (255), Expect = 2e-20
Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ A+ FNG ++
Sbjct: 1499 SIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVANVFNGRTLK 1558
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+A+ V ITDG DK +PT+E + DFLKR F KL+ V +P + +++++ L+++
Sbjct: 1559 AEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEKSSLWAQLHYV 1617
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 469
+ +D E ++N+N L ELY+H+
Sbjct: 1618 NTT---------------SLDKQEAYLVNLNNVLKELYMHS 1643
[29][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 102 bits (254), Expect = 2e-20
Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 2/186 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+ S FNG AI+ + E
Sbjct: 1909 SIFNEILVRCAYRSLVPEIERPFFSNNVVLIVYGDDNVLGIHPNIESAFNGNAIKAYMKE 1968
Query: 182 K-KVKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMTAIFSSLYWLTPS 355
+ +KITDG+DK +P I +P + +FLKR + K G+ +APL T+I+S L ++
Sbjct: 1969 ELGIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVETSIYSCLRYV--- 2025
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLLVDQ 535
+ Y + +++ NV +L E LH R+ F P V++
Sbjct: 2026 --------RLQNYDWQAPLLQ----NVQGSLYEASLHGPDMH-ARIYKHFATHFPKWVEE 2072
Query: 536 FRTWAF 553
+ +
Sbjct: 2073 HELYTY 2078
[30][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 101 bits (251), Expect = 5e-20
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG ++
Sbjct: 352 SIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLK 411
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L+++
Sbjct: 412 AEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYV 470
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 469
+ +D E ++N+N L ELY+++
Sbjct: 471 NTT---------------NLDKQEAYLVNLNNVLKELYMYS 496
[31][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 101 bits (251), Expect = 5e-20
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 5/161 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEIL+RY YRK+ P+P F + V L+ YGDDNLISV+ AS FNG ++
Sbjct: 1499 SIFNEILVRYCYRKILEKNNVPRPLHVNFPRMVKLVTYGDDNLISVSHVVASVFNGRTLK 1558
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++++ L+++
Sbjct: 1559 AEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSLWAQLHYV 1617
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 469
+ +D E ++N+N L ELY+++
Sbjct: 1618 NTT---------------NLDKQEAYLVNLNNVLKELYMYS 1643
[32][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 1492 SIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLK 1551
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L+++
Sbjct: 1552 SFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYV 1611
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
+ +++ E ++N+ L ELYLH+ +E +++R ++R+ L
Sbjct: 1612 S---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWL 1655
Query: 527 VD-QFRTWAFCESFHS 571
T A E FHS
Sbjct: 1656 QKADVPTIAQIEEFHS 1671
[33][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 94.7 bits (234), Expect = 4e-18
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 1492 SIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFISLCVYGDDNLISVHEYVKPYFSGSKLK 1551
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L+++
Sbjct: 1552 SFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYV 1611
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
+ +++ E ++N+ L ELYLH+ + Q +R ++R+ L
Sbjct: 1612 S---------------CNNLEMQEAYLVNLVNVLRELYLHSPEEACQ-LRRRALSRIEWL 1655
Query: 527 VD-QFRTWAFCESFHS 571
T A E FHS
Sbjct: 1656 QKADVPTIAQIEEFHS 1671
[34][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 94.7 bits (234), Expect = 4e-18
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Frame = +2
Query: 5 VFNEILIRYAYRKLAPK----PEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 169
+FNE+L+RY ++K+ + P +C F + +VYGDDNLISV+P FNG+ ++
Sbjct: 377 IFNELLVRYCFKKIMREGGATPLECSAFDSYIRFVVYGDDNLISVSPVIHDKFNGKLLKE 436
Query: 170 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLT 349
+A V ITDG DK PT+E +P + DFLKR F++ V AP + +++++ L++++
Sbjct: 437 CMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWDAPEERSSLYTQLHYVS 496
Query: 350 PSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
Y+G + VNV + ELY+H+ KE +R + LP L
Sbjct: 497 TKMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKEASDLRRKALRDLPWL 539
[35][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 94.4 bits (233), Expect = 6e-18
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 351 SIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLK 410
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L+++
Sbjct: 411 SFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYV 470
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
+ +++ E ++N+ L ELYLH+ +E +R+R ++ + L
Sbjct: 471 S---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWL 514
Query: 527 VD-QFRTWAFCESFHS 571
T A E FHS
Sbjct: 515 QKADVPTIAQIEEFHS 530
[36][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 94.4 bits (233), Expect = 6e-18
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+LIRY+Y KL AP F+ V L VYGDDNLISV +F+G ++
Sbjct: 1492 SIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNLISVHEYVKPYFSGSKLK 1551
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L+++
Sbjct: 1552 SFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYV 1611
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
+ +++ E ++N+ L ELYLH+ +E +++R ++R+ L
Sbjct: 1612 S---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWL 1655
Query: 527 VD-QFRTWAFCESFHS 571
T A E FHS
Sbjct: 1656 QKADVPTIAQIEEFHS 1671
[37][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 94.4 bits (233), Expect = 6e-18
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+LIRY+Y KL AP F+ + L VYGDDNLISV +F+G ++
Sbjct: 1491 SIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFISLCVYGDDNLISVHEYVKPYFSGSKLK 1550
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA + ITDG DK + T++ + E DFLKR F ++ + AP D +++S L+++
Sbjct: 1551 SFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKASLWSQLHYV 1610
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
+ +++ E ++N+ L ELYLH+ +E +R+R ++ + L
Sbjct: 1611 S---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRKALSCIEWL 1654
Query: 527 VD-QFRTWAFCESFHS 571
T A E FHS
Sbjct: 1655 QKADVPTIAQIEEFHS 1670
[38][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 92.8 bits (229), Expect = 2e-17
Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+LIRY+Y KL AP F+ V L VYGDDN ISV +F+G ++
Sbjct: 1492 SIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFVSLCVYGDDNFISVHEYVKPYFSGSKLK 1551
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA + ITDG DK + T++ + + DFLKR F ++ + AP D +++S L+++
Sbjct: 1552 SFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKASLWSQLHYV 1611
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
+ +++ E ++N+ L ELYLH+ +E +++R ++R+ L
Sbjct: 1612 S---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRKALSRIEWL 1655
Query: 527 VD-QFRTWAFCESFHS 571
T A E FHS
Sbjct: 1656 QKADVPTIAQIEEFHS 1671
[39][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+ ++
Sbjct: 351 SIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLK 410
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+++
Sbjct: 411 QSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV 470
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 490
+ +K Y + NV L ELY+H+ ++ EF+R
Sbjct: 471 -----NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 505
[40][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 7/170 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY Y+KL AP+ F + + L+ YGDDNLISV +F+G+ ++
Sbjct: 1506 SIFNEILIRYHYKKLMREQQAPELMVQSFDKLIGLVTYGDDNLISVNAVVTPYFDGKKLK 1565
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+LA+ V ITDG DK + + + E DFLKR F++ + + AP D +++S L+++
Sbjct: 1566 QSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFVQRSSTIWDAPEDKASLWSQLHYV 1625
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQR 490
+ +K Y + NV L ELY+H+ ++ EF+R
Sbjct: 1626 -----NCNNCEKEVAY----------LTNVVNVLRELYMHSPREATEFRR 1660
[41][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 85.9 bits (211), Expect = 2e-15
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G ++
Sbjct: 352 SIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLK 411
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L+++
Sbjct: 412 QAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYV 471
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+ + + + + V+V+ EL ++ ++E
Sbjct: 472 NVN----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 503
[42][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 85.9 bits (211), Expect = 2e-15
Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE +
Sbjct: 1500 SILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFF 1559
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+ +TDG DK I + + DFLKR F L G P+ +++ L+++
Sbjct: 1560 LRLSITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAK 1619
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
K +++ + V N+N L EL+LH S+E +R V L L
Sbjct: 1620 K---------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTLKWL 1660
[43][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 85.9 bits (211), Expect = 2e-15
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEIL+RY Y+ L AP F+ + ++ YGDDNLISV +F+G ++
Sbjct: 1503 SIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLISMVTYGDDNLISVNAVVKPYFDGTKLK 1562
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
+A + ITDG DK + T+E + + DFLKR FLK + + AP + ++++ L+++
Sbjct: 1563 QAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKASLWAQLHYV 1622
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+ + + + + V+V+ EL ++ ++E
Sbjct: 1623 NVN----NCEMQVAYMTNLVNVLRELYMHDPTEMVE 1654
[44][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 85.5 bits (210), Expect = 3e-15
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAYR R F V L+VYGDDNLISV+ + +S FNGE +
Sbjct: 315 SILNEILVKYAYRMCFADNPMIRESFDTHVALVVYGDDNLISVSDAISSKFNGEFLVDFF 374
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+ +TDG DK I + + DFLKR F L G P+ +++ L+++
Sbjct: 375 LRLSITVTDGVDKTKQGISFRKLTDCDFLKRNFKVLPDGEWVGPMSRESLWPQLHFVRAK 434
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARL 517
K +++ + V N+N L EL+LH S+E +R V L
Sbjct: 435 K---------------LEMADAYVANLNNILRELWLHG-SEEVTELRRMAVKTL 472
[45][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 84.3 bits (207), Expect = 6e-15
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 153 SIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLK 212
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L++
Sbjct: 213 EFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHY 272
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVAR 514
+ + + H K + V+V+ EL + N AL + K QRV +
Sbjct: 273 INVTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSD 321
Query: 515 LPLLVDQFRTWAFC 556
LP + +A C
Sbjct: 322 LPTVAQIEEWYATC 335
[46][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 84.3 bits (207), Expect = 6e-15
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 1497 SIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLK 1556
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L++
Sbjct: 1557 EFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHY 1616
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVAR 514
+ + + H K + V+V+ EL + N AL + K QRV +
Sbjct: 1617 INVTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSD 1665
Query: 515 LPLLVDQFRTWAFC 556
LP + +A C
Sbjct: 1666 LPTVAQIEEWYATC 1679
[47][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 84.3 bits (207), Expect = 6e-15
Identities = 61/194 (31%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPE-----KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + K + F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 1500 SIFNEILIRYSFKAIMRKQKVPGLISISFDKYVGMVTYGDDNLLSVSEVVKPYFDGKRLK 1559
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA+ KV ITDG DK +P + + + DFLKR F K G+ AP + ++++ L++
Sbjct: 1560 EFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFRKDKNGIFWNAPEEKESLWAQLHY 1619
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVALMELYLHNDSKEFQRVRSFFVAR 514
+ + + H K + V+V+ EL + N AL + K QRV +
Sbjct: 1620 INVTNLEQHEAYKTNL----VNVLRELYMWDVNECSALRK-------KALQRVEWLVPSD 1668
Query: 515 LPLLVDQFRTWAFC 556
LP + +A C
Sbjct: 1669 LPTVAQIEEWYATC 1682
[48][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 82.0 bits (201), Expect = 3e-14
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YA+R R F V L+VYGDDNLISV+ + ++ FNGE +
Sbjct: 1500 SILNEILVKYAFRMCFADNPMVRESFDTHVSLVVYGDDNLISVSDAISAKFNGEFLVDFF 1559
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+ + +TDG DK I + + DFLKR F L G P+ +++ L+++
Sbjct: 1560 LKLSITVTDGVDKTKKGISFRRLADCDFLKRGFKNLPDGEWIGPMSRESLWPQLHFVRAK 1619
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH--NDSKEFQR 490
K +++ + V N+N L EL+LH N++ E +R
Sbjct: 1620 K---------------LEMADAYVANLNNILRELWLHSANEATELRR 1651
[49][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 81.6 bits (200), Expect = 4e-14
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 1500 SIFNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLK 1559
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L++
Sbjct: 1560 EFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHY 1619
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVAR 514
+ + + H K + V+V+ EL +N AL + K QRV +
Sbjct: 1620 INVTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSD 1668
Query: 515 LPLLVDQFRTWAFC 556
LP + + +A C
Sbjct: 1669 LPTVAQIEKWYASC 1682
[50][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 81.6 bits (200), Expect = 4e-14
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 9/194 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + P F + V ++ YGDDNL+SV+ +F+G+ ++
Sbjct: 352 SIFNEILIRYSFKAIMREQKVPDLIPISFDKYVGMVTYGDDNLLSVSEVVKPFFDGKRLK 411
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA+ KV ITDG DK +P + + + DFLKR F K +G +P + ++++ L++
Sbjct: 412 EFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFKKDRSGFFWNSPEEKESLWAQLHY 471
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELV---LNVNVALMELYLHNDSKEFQRVRSFFVAR 514
+ + + H K + V+V+ EL +N AL + K QRV +
Sbjct: 472 INVTNLEQHEAYKTNL----VNVLRELYMWDINECAALRK-------KALQRVSWLLPSD 520
Query: 515 LPLLVDQFRTWAFC 556
LP + + +A C
Sbjct: 521 LPTVAQIEKWYASC 534
[51][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 81.3 bits (199), Expect = 5e-14
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++
Sbjct: 354 SIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLK 413
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA ++ ITDG DK +P ++ + + DFLKR F LYW
Sbjct: 414 EFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWD 457
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
P + + Q + ++ E N+ L EL++ D KE +R + R+ L
Sbjct: 458 APEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWL 516
Query: 527 V-DQFRTWAFCESFHS 571
V +T A E++++
Sbjct: 517 VPSDLQTVAQIEAWYA 532
[52][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 81.3 bits (199), Expect = 5e-14
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 6/196 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-----APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++
Sbjct: 1498 SIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLK 1557
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
LA ++ ITDG DK +P ++ + + DFLKR F LYW
Sbjct: 1558 EFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGFKN----------------RGLYWD 1601
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVARLPLL 526
P + + Q + ++ E N+ L EL++ D KE +R + R+ L
Sbjct: 1602 APEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRELFMW-DKKECAELRRKALQRISWL 1660
Query: 527 V-DQFRTWAFCESFHS 571
V +T A E++++
Sbjct: 1661 VPSDLQTVAQIEAWYA 1676
[53][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 80.9 bits (198), Expect = 7e-14
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 349 SILNEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFM 408
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G + P+ +++ L+++
Sbjct: 409 EGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAK 468
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 469 K---------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 499
[54][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 80.9 bits (198), Expect = 7e-14
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY A P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1521 SILNEILVKYAYWHCFADNPTVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFM 1580
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G + P+ +++ L+++
Sbjct: 1581 EGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMNPDGTWRCPMSKESLWPQLHYVKAK 1640
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1641 K---------------LEMAEAYINNCNNILRELWLHDVAEAKEFR 1671
[55][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G ++
Sbjct: 350 SIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLK 409
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
L + ITDG DK +P + + + DFLKR F K V P + ++++ L+++
Sbjct: 410 EFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYV 469
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVR 496
T + + H E ++NV + ELYLH D +E +R
Sbjct: 470 TTNNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELR 503
[56][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 80.5 bits (197), Expect = 9e-14
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNE+L+RY+Y K+ P F V ++ YGDDNL+SV + F+G ++
Sbjct: 1496 SIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDDNLLSVQSAITHVFDGTKLK 1555
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
L + ITDG DK +P + + + DFLKR F K V P + ++++ L+++
Sbjct: 1556 EFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFKKESDVVWVGPEEKESLWAQLHYV 1615
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVR 496
T + + H E ++NV + ELYLH D +E +R
Sbjct: 1616 TTNNLEKH---------------EAYLVNVVNVIRELYLH-DPREAAELR 1649
[57][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 351 SILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFM 410
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 411 EGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 470
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 471 K---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 501
[58][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1522 SILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFM 1581
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1582 EGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 1641
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1642 K---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[59][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1421 SILNEILVKYAYWHCFEDNPNVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFM 1480
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1481 EGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 1540
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1541 K---------------LEMAEAYINNCNNILRELWLHDVREAKEFR 1571
[60][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1522 SILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFM 1581
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1582 EGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 1641
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1642 K---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[61][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 246 SILNEILVKYAYWHCFGDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFM 305
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 306 EGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 365
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 366 K---------------LEMAEAYINNCNNILCELWLHDVKEAKEFR 396
[62][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 79.7 bits (195), Expect = 1e-13
Identities = 54/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1522 SILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSRFDGNFLVSFM 1581
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1582 EGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 1641
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 499
K +++ E + N N L EL+LH D KE + R+
Sbjct: 1642 K---------------LEMAEAYINNCNNILRELWLH-DVKEAEEFRN 1673
[63][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 79.0 bits (193), Expect = 2e-13
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG + +
Sbjct: 351 SILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFM 410
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + + DFLKRKF + G + ++ L+++
Sbjct: 411 CNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAK 470
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 478
K V++ E + N N L EL+L + K
Sbjct: 471 K---------------VEMSEAYISNCNNILRELWLGSPEK 496
[64][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 79.0 bits (193), Expect = 2e-13
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKP-EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 1521 SILNEILVKYAYWHCFVDNPIVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGNFLVKFM 1580
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1581 EGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKLNPDGTWRSPMSKESLWPQLHYVKAK 1640
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1641 K---------------LEMAEAYINNCNNILRELWLHDVIEAKEFR 1671
[65][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 79.0 bits (193), Expect = 2e-13
Identities = 54/161 (33%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEILI+YAY K R F V ++VYGDDNLISV+ + +S FNG + +
Sbjct: 1494 SILNEILIKYAYWKCFETESLIRDHFDTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFM 1553
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + + DFLKRKF + G + ++ L+++
Sbjct: 1554 CNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAK 1613
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 478
K V++ E + N N L EL+L + K
Sbjct: 1614 K---------------VEMSEAYISNCNNILRELWLGSPEK 1639
[66][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 78.2 bits (191), Expect = 4e-13
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 4/165 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V ++VYGDDNLISV+ + +S F+G + +
Sbjct: 127 SILNEILVKYAYWHCFEDNPSVQSNFDAHVSMVVYGDDNLISVSDAISSKFDGSFLVSFM 186
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 187 EGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 246
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEF 484
K +++ E + N N L EL+LH+ ++K+F
Sbjct: 247 K---------------LEMAEAYINNCNNILRELWLHDVKEAKDF 276
[67][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 77.8 bits (190), Expect = 6e-13
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 2/161 (1%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR--FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEILI+YAY K R F V + VYGDDNLISV+ + +S FNG + +
Sbjct: 1494 SILNEILIKYAYWKCFETESLIRDHFDTHVAMAVYGDDNLISVSEAISSRFNGNFLVNFM 1553
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
A +K+TDG DK IE + DFLKR+F + G + ++ L+++
Sbjct: 1554 ANLGIKVTDGVDKTKIGIEFRTIENCDFLKRRFKENTDGTWSGVMAEEHLWPQLHFVKAK 1613
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSK 478
K V++ E + N N L EL+L + K
Sbjct: 1614 K---------------VEMSEAYISNCNNILRELWLEDPGK 1639
[68][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 77.8 bits (190), Expect = 6e-13
Identities = 49/149 (32%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + P F + V ++VYGDDNL+SV+ +F+G+ ++
Sbjct: 1498 SIFNEILIRYSFKAILRSQKIPDMIPVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRLK 1557
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA + ITDG DK +P ++ + + DFLKR F + G+ AP D ++++ L++
Sbjct: 1558 DFLATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF--KNRGLYWDAPEDKESLWAQLHY 1615
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVL 430
+ + + H K + V V+ EL +
Sbjct: 1616 VNANNLEKHEAYKTNL----VTVLRELFM 1640
[69][TOP]
>UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic
stunt virus RepID=B4ZF30_CNSV
Length = 73
Score = 76.3 bits (186), Expect = 2e-12
Identities = 38/71 (53%), Positives = 48/71 (67%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
SV NEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL +
Sbjct: 3 SVLNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETLKK 62
Query: 182 KKVKITDGSDK 214
K V ITDGSDK
Sbjct: 63 KNVTITDGSDK 73
[70][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 75.5 bits (184), Expect = 3e-12
Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLA-----PKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIR 166
S+FNEILIRY+++ + P F + V ++VYGDDNL+SV +F+G+ ++
Sbjct: 1498 SIFNEILIRYSFKAILRSQKIPDMISVSFDEYVSMVVYGDDNLLSVNEVIKPYFDGKRLK 1557
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVI-QAPLDMTAIFSSLYW 343
LA + ITDG DK +P ++ + + DFLKR F + G+ AP + ++++ L++
Sbjct: 1558 EFLATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF--KNRGLYWDAPEEKESLWAQLHY 1615
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVL 430
+ + + H K + V V+ EL +
Sbjct: 1616 VNANNLEKHEAYKTNL----VTVLRELFM 1640
[71][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 75.1 bits (183), Expect = 4e-12
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 4/166 (2%)
Frame = +2
Query: 2 SVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 175
S+ NEIL++YAY P + F V + YGDDNLISV+ + +S F+G + +
Sbjct: 1522 SILNEILVKYAYWHCFEDNPSVQSNFDAHVSMEEYGDDNLISVSDAISSKFDGSFLVSFI 1581
Query: 176 AEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS 355
+K+TDG DK IE + DFLKR F G ++P+ +++ L+++
Sbjct: 1582 EGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFKMSPDGTWRSPMSKESLWPQLHFVKAK 1641
Query: 356 KDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN--DSKEFQ 487
K +++ E + N N L EL+LH+ ++KEF+
Sbjct: 1642 K---------------LEMAEAYINNCNNILRELWLHDVKEAKEFR 1672
[72][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 67.0 bits (162), Expect = 1e-09
Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKP------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ NE +R+A++++ + + V VYGDDNL+SV+ +S +N +I
Sbjct: 454 SLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVHFAVYGDDNLVSVSDKYSSLYNLVSI 513
Query: 164 RVTLAEKKVKITDG---SDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSS 334
L E+ V + +G ++D P P P DFLKR+F+ +G + APLD +++
Sbjct: 514 SSFLRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFLKRRFVLGSSGRVLAPLDKSSLLGC 572
Query: 335 LYWLTPSKD 361
+W+ S+D
Sbjct: 573 AHWVRKSQD 581
[73][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
RepID=Q9IJX4_CRPV
Length = 1771
Score = 66.6 bits (161), Expect = 1e-09
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 8/173 (4%)
Frame = +2
Query: 5 VFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 169
++N +++R + RKLAP+ + + F++ V +I YGDDN ++++ WFN I
Sbjct: 1582 LYNSMIMRIVWILLARKLAPEMQSMKKFRENVSMISYGDDNCLNISDRVVEWFNQITISE 1641
Query: 170 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLY 340
+ E K + TD K ++ E+ FLK++F+ +L V APL I+ L
Sbjct: 1642 QMKEIKHEYTD-EGKTGDMVKFPSLSEIHFLKKRFVFSHQLQRTV--APLQKDVIYEMLN 1698
Query: 341 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 499
W +D E L++N+N A E+ H S E+Q++RS
Sbjct: 1699 WT----------------RNTIDPNEILMMNINTAFREIVYHGKS-EYQKLRS 1734
[74][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
RepID=UPI000043F357
Length = 707
Score = 65.5 bits (158), Expect = 3e-09
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ N I ++Y KL + E F+Q V YGDDNL+SV FN I
Sbjct: 359 SLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKI 418
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 340
LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+
Sbjct: 419 ADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLH 477
Query: 341 WL 346
W+
Sbjct: 478 WI 479
[75][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
RepID=Q769F2_SDV
Length = 374
Score = 65.5 bits (158), Expect = 3e-09
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
SV NE +++++ + A + C F + + VYGDDN +SVA AS +N + I
Sbjct: 49 SVVNEFYLKWSWMGIMREAGYAKEASLCAFHEATEISVYGDDNFVSVATPVASLYNLKTI 108
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFL-KLDTGVIQAPLDMTAIFSSL 337
L+ VK+ DG+ + TI+P P E+DFLKRKF+ + I PL+ +I L
Sbjct: 109 SEFLSRVGVKLGDGA--KSGTIKPFIPLEEVDFLKRKFVADSKSTAILCPLNKRSIEERL 166
Query: 338 YWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 466
+++ G D I L LN+ AL E + H
Sbjct: 167 FYV----------------RGGQDEIAALELNIATALCEAFFH 193
[76][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
Length = 2250
Score = 65.5 bits (158), Expect = 3e-09
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ N I ++Y KL + E F+Q V YGDDNL+SV FN I
Sbjct: 1902 SLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITEKFNLVKI 1961
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 340
LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+
Sbjct: 1962 ADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLH 2020
Query: 341 WL 346
W+
Sbjct: 2021 WI 2022
[77][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
Length = 2235
Score = 65.5 bits (158), Expect = 3e-09
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCR------FQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ N I ++Y KL + E F+Q V YGDDNL+SV FN I
Sbjct: 1887 SLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMVAYATYGDDNLVSVNDVITERFNLVKI 1946
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 340
LAE V + +G+DK+ + P P ++DFLKRKF+ G + APL+ I L+
Sbjct: 1947 ADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFLKRKFVHYQ-GHVVAPLNPVNITERLH 2005
Query: 341 WL 346
W+
Sbjct: 2006 WI 2007
[78][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 64.3 bits (155), Expect = 6e-09
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 157
S+ NE +RYA+ L +P K + + VYGDDNL++V P W+
Sbjct: 1455 SLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELQWYTLP 1513
Query: 158 AIRVTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFS 331
AI L V I +G DK+ K EL FL R F + G +QAPL +I
Sbjct: 1514 AIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIE 1573
Query: 332 SLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+YW+ PS + T + + + G V E+LV +V AL E
Sbjct: 1574 PMYWIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622
[79][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 63.9 bits (154), Expect = 8e-09
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ N + +AY KL + + K F+ V VYGDDNLISV + FN I
Sbjct: 359 SLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTI 418
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 340
L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I L+
Sbjct: 419 SNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLH 477
Query: 341 WL 346
W+
Sbjct: 478 WV 479
[80][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 63.9 bits (154), Expect = 8e-09
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL-APKPEKC-----RFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ N + +AY KL + + K F+ V VYGDDNLISV + FN I
Sbjct: 1729 SLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTI 1788
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLY 340
L E V + +G+DK+ + P P ++DFLKR+F L G I APL+ I L+
Sbjct: 1789 SNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQ-GHIVAPLNTVNITERLH 1847
Query: 341 WL 346
W+
Sbjct: 1848 WV 1849
[81][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 63.9 bits (154), Expect = 8e-09
Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 157
S+ NE +RYA+ L +P K + + VYGDDNL++V P W+
Sbjct: 1455 SLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFNKLFVAVYGDDNLVAV-PMELHWYTLP 1513
Query: 158 AIRVTLAEKKVKITDGSDKDAPTIEPK--PFWELDFLKRKFLKLDTGVIQAPLDMTAIFS 331
AI L V I +G DK+ K EL FL R F + G +QAPL +I
Sbjct: 1514 AIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSRGFKRHRLGYVQAPLKWVSIIE 1573
Query: 332 SLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+YW+ PS + T + + + G V E+LV +V AL E
Sbjct: 1574 PMYWIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEKLVTDVQNALKE 1622
[82][TOP]
>UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic
sadwavirus RepID=A4UVR7_SDV
Length = 319
Score = 62.0 bits (149), Expect = 3e-08
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +2
Query: 65 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KP 241
C F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 21 CAFHEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIP 78
Query: 242 FWELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVI 415
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 79 LEEVDFLKRQFI-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDEL 121
Query: 416 EELVLNVNVALMELYLH 466
L LNV AL E + H
Sbjct: 122 AALELNVATALCEAFFH 138
[83][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
RepID=A7KCA2_9VIRU
Length = 1614
Score = 60.1 bits (144), Expect = 1e-07
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+ N + +RY Y L P+ F+ V L+ YGDDN++SV+ C WFN +I T A
Sbjct: 1299 SIVNSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC-DWFNHTSISETFAT 1357
Query: 182 KKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLD-TGVIQAPLDMTAIFSSLYWLTPSK 358
+ T +DK++ ++ + FLKR + D G APL+ +I SL T SK
Sbjct: 1358 LNIVYT-MADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEEESIEKSLMVWTRSK 1416
[84][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 59.7 bits (143), Expect = 2e-07
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPE--------KCRFQQTVCLIVYGDDNLISVAPSCASWFNGE 157
S+ NE +RYA+ L +P K + + VYGDDNL++V P W++
Sbjct: 1458 SLLNEFYMRYAFISLLRRPHIAARAIGVKPHDFNQLFVAVYGDDNLVAV-PLHLQWYSLP 1516
Query: 158 AIRVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFS 331
I L V I +G DK D ++ + EL FL R F + G APL +I
Sbjct: 1517 NIAQELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSIIE 1576
Query: 332 SLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+YW+ P+ + T + + + G+V E+LV +V AL E
Sbjct: 1577 PMYWIRPAPGCPDAQAMMENVETGIREAFHHGQV-AYEKLVADVQEALNE 1625
[85][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
Length = 2151
Score = 59.7 bits (143), Expect = 2e-07
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNG 154
S+ NE +RYA+ L +P + F Q + + VYGDDNL++V P W++
Sbjct: 1456 SLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSL 1513
Query: 155 EAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIF 328
I L V I +G DK D ++ + EL FL R F + G APL +I
Sbjct: 1514 PNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSII 1573
Query: 329 SSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+YW+ P+ + T + + + G V ++LVL+V AL E
Sbjct: 1574 EPMYWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVLDVQTALDE 1623
[86][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
Length = 1759
Score = 59.3 bits (142), Expect = 2e-07
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 8/177 (4%)
Frame = +2
Query: 5 VFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRV 169
++N I++R ++ K P+ + + F + V LI YGDDN++++ WFN I
Sbjct: 1570 LYNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYGDDNVLNIDAKVVEWFNQINISE 1629
Query: 170 TLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQAPLDMTAIFSSLY 340
+ E + + TD + K ++ + ++ FLKRKF +L V APL + I+ L
Sbjct: 1630 VMTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKFRFSPELQRHV--APLKIEVIYEMLN 1686
Query: 341 WLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFVA 511
W S +D E L+ N+ A E+ H +E+ ++RS +A
Sbjct: 1687 WSRRS----------------IDPDEILMSNIETAFREVVYHG-KEEYDKLRSAVLA 1726
[87][TOP]
>UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic
sadwavirus RepID=A4UVR5_SDV
Length = 319
Score = 58.2 bits (139), Expect = 5e-07
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Frame = +2
Query: 71 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 247
F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 23 FYEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIPLE 80
Query: 248 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 421
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 81 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAA 123
Query: 422 LVLNVNVALMELYLH 466
L LNV AL E + H
Sbjct: 124 LELNVATALCEAFFH 138
[88][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
RepID=UPI0000164A61
Length = 694
Score = 57.8 bits (138), Expect = 6e-07
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIR 166
SV N+ + +A+RK+ + + R ++ C VYGDDN++S + +N I
Sbjct: 354 SVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIA 413
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
L V ++DG K ++ F ELDFLKR+++ PL +AI L+W+
Sbjct: 414 AELKTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWV 472
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 496
S+D +E L N ALME + H D F R R
Sbjct: 473 RSSEDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 507
[89][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
Length = 1915
Score = 57.8 bits (138), Expect = 6e-07
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEK----CRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIR 166
SV N+ + +A+RK+ + + R ++ C VYGDDN++S + +N I
Sbjct: 1575 SVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHCTFSVYGDDNVVSFSLQVKDMYNLVTIA 1634
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWL 346
L V ++DG K ++ F ELDFLKR+++ PL +AI L+W+
Sbjct: 1635 AELKTIGVNLSDGK-KTGNLVKWMEFSELDFLKRRWVLYSGQGFLCPLHKSAIEERLFWV 1693
Query: 347 TPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVR 496
S+D +E L N ALME + H D F R R
Sbjct: 1694 RSSEDS----------------VETLDDNCYSALMEAFHHGRDYFNFLRAR 1728
[90][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
RepID=A0N0G3_9VIRU
Length = 1943
Score = 57.4 bits (137), Expect = 8e-07
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKP---------EKCRFQQTVCLIVYGDDNLISVAPSCASWFNG 154
S+ NE +RYA+ L +P + F Q + + VYGDDNL++V P W++
Sbjct: 1248 SLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFNQ-LFIAVYGDDNLVAV-PLHLQWYSL 1305
Query: 155 EAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIF 328
I L V I +G DK D ++ + EL FL R F + G APL +I
Sbjct: 1306 PNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSELTFLSRGFKRHALGYHMAPLKWVSII 1365
Query: 329 SSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEELVLNVNVALME 454
+YW+ P+ + T + + + G V ++LV +V AL E
Sbjct: 1366 EPMYWIRPAPGCPDTQAMMENVETGIREAFHHGRV-AYDKLVSDVQTALDE 1415
[91][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling
virus RepID=Q9YZ97_SDV
Length = 872
Score = 56.2 bits (134), Expect = 2e-06
Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
S+ NE +++++ L A + F + + +YGDDN +SVA AS +N + I
Sbjct: 546 SIVNEFYLKWSWMGLMKEAGYAKEASLYAFHEATEISLYGDDNFVSVATPVASLYNLKTI 605
Query: 164 RVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYW 343
L VK+ DG+ K T P E+DFLKR+F+ A TAI
Sbjct: 606 SEFLRRIGVKLGDGA-KTGITKPFIPLEEVDFLKRQFV--------ADAGSTAI------ 650
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQR 490
L P K K ++ G D + L LN+ AL E + H KE+ R
Sbjct: 651 LCPLK-KISIEERLFYVKGGQDELAALELNMATALCEAFFH--GKEYFR 696
[92][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
Length = 2163
Score = 56.2 bits (134), Expect = 2e-06
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL----APKPEKCRFQQTVCLI-VYGDDNLISVAPSCASWFNGEAIR 166
S+ N+ + +A+RK+ +P R +T C VYGDDN++S + + +N I
Sbjct: 1636 SMVNQFYLMWAWRKIMSRISPSMVTYRVMRTHCTFSVYGDDNVVSFSLAVRDMYNLCTIA 1695
Query: 167 VTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTG-VIQAPLDMTAIFSSLYW 343
L V ++DG K I+ F +LDFLKR++ +L+ G + PLD AI L+W
Sbjct: 1696 DELKTIGVTLSDGK-KTGVLIKWTGFKDLDFLKRRW-ELEPGHGFKCPLDKMAIEERLFW 1753
Query: 344 LTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 466
+ S+D +E L N ALME + H
Sbjct: 1754 VRKSEDN----------------MESLDDNCYSALMEAFHH 1778
[93][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
RepID=UPI0000164A59
Length = 682
Score = 55.8 bits (133), Expect = 2e-06
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
SV NE +++++ L A + F + + +YGDDN +SVA AS +N I
Sbjct: 357 SVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVSVATPVASVYNLTTI 416
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTG--VIQAPLDMTAIFSS 334
L VK+ DG+ TI+P P E+DFLKR+F+ D+G I PL +I
Sbjct: 417 SNFLGRIGVKLGDGA--KTGTIKPFIPLEEVDFLKRQFV-ADSGSTAILCPLKKISIEER 473
Query: 335 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 466
L+++ G D I L LN+ AL E + H
Sbjct: 474 LFYV----------------RGGQDEIAALELNIATALCEAFFH 501
[94][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
Length = 2081
Score = 55.8 bits (133), Expect = 2e-06
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Frame = +2
Query: 2 SVFNEILIRYAYRKL------APKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAI 163
SV NE +++++ L A + F + + +YGDDN +SVA AS +N I
Sbjct: 1756 SVVNEFYLKWSWIGLLKEAGYANQATLYAFHEATEISLYGDDNFVSVATPVASVYNLTTI 1815
Query: 164 RVTLAEKKVKITDGSDKDAPTIEP-KPFWELDFLKRKFLKLDTG--VIQAPLDMTAIFSS 334
L VK+ DG+ TI+P P E+DFLKR+F+ D+G I PL +I
Sbjct: 1816 SNFLGRIGVKLGDGA--KTGTIKPFIPLEEVDFLKRQFV-ADSGSTAILCPLKKISIEER 1872
Query: 335 LYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH 466
L+++ G D I L LN+ AL E + H
Sbjct: 1873 LFYV----------------RGGQDEIAALELNIATALCEAFFH 1900
[95][TOP]
>UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F388_9VIRU
Length = 139
Score = 55.8 bits (133), Expect = 2e-06
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAE 181
S+ N + +RYAY L PK E F++ V L+ YGDDN++SV+P+ A W+N AI A
Sbjct: 70 SLVNSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWYNHTAIAAAFAT 128
Query: 182 KKVKIT 199
+ T
Sbjct: 129 MDITYT 134
[96][TOP]
>UniRef100_Q20LA1 Polyprotein 1 (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q20LA1_9SECO
Length = 533
Score = 53.9 bits (128), Expect = 9e-06
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +2
Query: 2 SVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS 133
S+FNEIL+R AYR L P+ E+ F V LIVYGDDN++ + P+
Sbjct: 488 SIFNEILVRCAYRSLVPEIERPFFSNNVALIVYGDDNVMGIHPN 531