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[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 328 bits (841), Expect = 2e-88
Identities = 160/192 (83%), Positives = 173/192 (90%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
RYAFVGQ+V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+VY
Sbjct: 326 RYAFVGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVY 385
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLK
Sbjct: 386 GDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLK 445
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
LD G++QAPLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELY
Sbjct: 446 LDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELY 505
Query: 543 LHNDSKEFQRVQ 578
LHND EFQRV+
Sbjct: 506 LHNDVAEFQRVR 517
[2][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 328 bits (841), Expect = 2e-88
Identities = 160/192 (83%), Positives = 173/192 (90%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
RYAFVGQ+V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+VY
Sbjct: 1768 RYAFVGQQVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPAPERNRFGSTVCLLVY 1827
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLK
Sbjct: 1828 GDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLK 1887
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
LD G++QAPLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELY
Sbjct: 1888 LDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELY 1947
Query: 543 LHNDSKEFQRVQ 578
LHND EFQRV+
Sbjct: 1948 LHNDVAEFQRVR 1959
[3][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 328 bits (840), Expect = 2e-88
Identities = 157/192 (81%), Positives = 173/192 (90%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
RYAFVG +V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAPKPE+ RF Q VCL+VY
Sbjct: 326 RYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVY 385
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLK
Sbjct: 386 GDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLK 445
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
LD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELY
Sbjct: 446 LDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELY 505
Query: 543 LHNDSKEFQRVQ 578
LHND +EF RV+
Sbjct: 506 LHNDPREFSRVR 517
[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 328 bits (840), Expect = 2e-88
Identities = 157/192 (81%), Positives = 173/192 (90%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
RYAFVG +V+KVNCGLPSGFALTVVVNSVFNEILIRYAY+KLAPKPE+ RF Q VCL+VY
Sbjct: 1766 RYAFVGPEVYKVNCGLPSGFALTVVVNSVFNEILIRYAYKKLAPKPERNRFNQVVCLLVY 1825
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLK
Sbjct: 1826 GDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLK 1885
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
LD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELY
Sbjct: 1886 LDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELY 1945
Query: 543 LHNDSKEFQRVQ 578
LHND +EF RV+
Sbjct: 1946 LHNDPREFSRVR 1957
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 282 bits (721), Expect = 2e-74
Identities = 139/193 (72%), Positives = 162/193 (83%), Gaps = 1/193 (0%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
RYA VG +V+KVNCGLPSGFALTVV+NS+FNEILIRYAY+ LAP PEK F VCL+VY
Sbjct: 324 RYALVGTQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVY 383
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-L 359
GDDNLISV+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE KPF ELDFLKRKF +
Sbjct: 384 GDDNLISVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYV 443
Query: 360 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 539
+ G + APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+EL
Sbjct: 444 HPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVEL 503
Query: 540 YLHNDSKEFQRVQ 578
YLHND +EF RV+
Sbjct: 504 YLHNDKEEFNRVR 516
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 282 bits (721), Expect = 2e-74
Identities = 139/193 (72%), Positives = 162/193 (83%), Gaps = 1/193 (0%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
RYA VG +V+KVNCGLPSGFALTVV+NS+FNEILIRYAY+ LAP PEK F VCL+VY
Sbjct: 1750 RYALVGTQVYKVNCGLPSGFALTVVMNSIFNEILIRYAYKTLAPTPEKNSFGINVCLLVY 1809
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-L 359
GDDNLISV+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE KPF ELDFLKRKF +
Sbjct: 1810 GDDNLISVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYV 1869
Query: 360 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 539
+ G + APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+EL
Sbjct: 1870 HPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVEL 1929
Query: 540 YLHNDSKEFQRVQ 578
YLHND +EF RV+
Sbjct: 1930 YLHNDKEEFNRVR 1942
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 211 bits (537), Expect = 3e-53
Identities = 111/192 (57%), Positives = 135/192 (70%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R A GQ+V +V GLPSGFALTVV+NSVFNEIL+RY ++ L P++ F V L+VY
Sbjct: 334 RLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVY 393
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNL+S A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLK
Sbjct: 394 GDDNLMSCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLK 453
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
L+TGV+QAPLD+TAIFS L+W+TP K Q VD + EL LNV VAL ELY
Sbjct: 454 LETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVE-NVDTLYELALNVQVALTELY 512
Query: 543 LHNDSKEFQRVQ 578
LH + +EFQRV+
Sbjct: 513 LHGNKEEFQRVR 524
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 211 bits (537), Expect = 3e-53
Identities = 111/192 (57%), Positives = 135/192 (70%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R A GQ+V +V GLPSGFALTVV+NSVFNEIL+RY ++ L P++ F V L+VY
Sbjct: 1824 RLAITGQEVMRVRAGLPSGFALTVVINSVFNEILMRYCFKVLVLGPQRNSFSTYVTLLVY 1883
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNL+S A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLK
Sbjct: 1884 GDDNLMSCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLK 1943
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
L+TGV+QAPLD+TAIFS L+W+TP K Q VD + EL LNV VAL ELY
Sbjct: 1944 LETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVE-NVDTLYELALNVQVALTELY 2002
Query: 543 LHNDSKEFQRVQ 578
LH + +EFQRV+
Sbjct: 2003 LHGNKEEFQRVR 2014
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 187 bits (475), Expect = 5e-46
Identities = 97/192 (50%), Positives = 125/192 (65%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P F Q VCLIVY
Sbjct: 601 RWSICGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRVTVPRPLVNNFNQEVCLIVY 660
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLISV P +FNG+ I+ LA+ KV ITDGSDK++P + KP +LDFLKR F
Sbjct: 661 GDDNLISVKPDTMKYFNGDRIKEVLAKFKVTITDGSDKNSPVLRAKPLKQLDFLKRGFKV 720
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AIFSSLY++ P + + + L LN VAL ELY
Sbjct: 721 QSDGRVLAPLDLQAIFSSLYYINP----------------QGNTLNSLFLNAQVALRELY 764
Query: 543 LHNDSKEFQRVQ 578
LHND ++F V+
Sbjct: 765 LHNDIEQFTAVR 776
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 186 bits (472), Expect = 1e-45
Identities = 95/192 (49%), Positives = 127/192 (66%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVY
Sbjct: 327 RWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVY 386
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLIS+ P +FNGE I+ LA+ KV ITDGSDK++P + KP +LDFLKR F
Sbjct: 387 GDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRV 446
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AI+SSLY++ P + ++++ L LN VAL ELY
Sbjct: 447 ESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELY 490
Query: 543 LHNDSKEFQRVQ 578
LH D ++F V+
Sbjct: 491 LHGDVEQFTAVR 502
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 186 bits (472), Expect = 1e-45
Identities = 95/192 (49%), Positives = 127/192 (66%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVY
Sbjct: 601 RWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVY 660
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLIS+ P +FNGE I+ LA+ KV ITDGSDK++P + KP +LDFLKR F
Sbjct: 661 GDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRV 720
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AI+SSLY++ P + ++++ L LN VAL ELY
Sbjct: 721 ESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELY 764
Query: 543 LHNDSKEFQRVQ 578
LH D ++F V+
Sbjct: 765 LHGDVEQFTAVR 776
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 186 bits (472), Expect = 1e-45
Identities = 95/192 (49%), Positives = 127/192 (66%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVY
Sbjct: 1813 RWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVY 1872
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLIS+ P +FNGE I+ LA+ KV ITDGSDK++P + KP +LDFLKR F
Sbjct: 1873 GDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRV 1932
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AI+SSLY++ P + ++++ L LN VAL ELY
Sbjct: 1933 ESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELY 1976
Query: 543 LHNDSKEFQRVQ 578
LH D ++F V+
Sbjct: 1977 LHGDVEQFTAVR 1988
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 185 bits (470), Expect = 2e-45
Identities = 95/192 (49%), Positives = 125/192 (65%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVY
Sbjct: 601 RWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVY 660
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLIS+ P +FNGE I+ LA KV ITDGSDK++P + KP +LDFLKR F
Sbjct: 661 GDDNLISIKPDTMKYFNGEQIKTILARYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRV 720
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AI+SSLY++ P + +++ L LN VAL ELY
Sbjct: 721 ESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELY 764
Query: 543 LHNDSKEFQRVQ 578
LH D ++F V+
Sbjct: 765 LHGDVEQFTAVR 776
[14][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 185 bits (469), Expect = 2e-45
Identities = 95/192 (49%), Positives = 125/192 (65%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+VF+V G+PSG ALTV++NS+FNE+LIRY YR P+P F+Q VCLIVY
Sbjct: 601 RWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLIRYVYRITVPRPLVNNFKQEVCLIVY 660
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLIS+ P +FNGE I+ LA KV ITDGSDK++P + KP +LDFLKR F
Sbjct: 661 GDDNLISIKPDTMKYFNGEQIKTILANIKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRV 720
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AI+SSLY++ P + +++ L LN VAL ELY
Sbjct: 721 ESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELY 764
Query: 543 LHNDSKEFQRVQ 578
LH D ++F V+
Sbjct: 765 LHGDVEQFTAVR 776
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 179 bits (455), Expect = 1e-43
Identities = 91/192 (47%), Positives = 125/192 (65%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R++ GQ+V++V G+PSG ALTV++NS+FNE+LI Y YR P+ F+Q VCLIVY
Sbjct: 327 RWSVCGQRVYEVRAGMPSGCALTVIINSLFNELLIGYVYRVTVPRSLVNNFKQEVCLIVY 386
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLIS+ P +FNGE I+ TLA+ ++ ITDGSDK++P + KP +LDFLKR F
Sbjct: 387 GDDNLISIKPDTMKYFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRV 446
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G + APLD+ AI+SSLY++ P + +++ L LN VAL ELY
Sbjct: 447 ESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELY 490
Query: 543 LHNDSKEFQRVQ 578
LH D ++F V+
Sbjct: 491 LHGDVEQFTAVR 502
[16][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 158 bits (399), Expect = 3e-37
Identities = 92/192 (47%), Positives = 115/192 (59%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R +VF+V G+ G ALTV++NSVFNEILIRY Y+ + P PE RF+ V L+VY
Sbjct: 1826 RKCLARSQVFEVRGGIRRG-ALTVLLNSVFNEILIRYVYKTVIPSPEFNRFETFVTLVVY 1884
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLI+V PS F GE I+ TLA KK+ ITDGSDK +P +E KP +LDFLKR FL
Sbjct: 1885 GDDNLIAVDPSMQKIFTGEVIKKTLARKKITITDGSDKLSPVLEAKPLAQLDFLKRSFLV 1944
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
D+G + LD T I+SSL +L S + D I L NV AL ELY
Sbjct: 1945 SDSGQVMPALDRTCIYSSLLYLR---------------SADCDPIPLLHQNVQNALQELY 1989
Query: 543 LHNDSKEFQRVQ 578
D +EF ++
Sbjct: 1990 YRQDREEFDNLR 2001
[17][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 157 bits (397), Expect = 6e-37
Identities = 84/188 (44%), Positives = 113/188 (60%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+VY
Sbjct: 1522 RKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFNEYVTLLVY 1581
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLI+V PS FNG+ I+ T+A+ +V ITDGSDK +PT+ KP LDFLKR F
Sbjct: 1582 GDDNLIAVDPSILEVFNGDVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKL 1641
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
D G + APLD TAI+SSL+W+ DV+ L N AL+E++
Sbjct: 1642 ADNGQVYAPLDKTAIYSSLHWVAGRGQ---------------DVMSALKDNARSALIEMW 1686
Query: 543 LHNDSKEF 566
H D EF
Sbjct: 1687 AHQDKAEF 1694
[18][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 153 bits (387), Expect = 8e-36
Identities = 85/192 (44%), Positives = 115/192 (59%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++V G+PSG ALTV++NS+FNE LIR+ +R + RF Q V L++Y
Sbjct: 318 RKSICGARVYEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIY 377
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLI+V P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F K
Sbjct: 378 GDDNLIAVHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRK 437
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
L+ G + APLD+ ++++SL +T H L NV+ AL+ELY
Sbjct: 438 LNDGTVYAPLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELY 482
Query: 543 LHNDSKEFQRVQ 578
LH + F ++
Sbjct: 483 LHGNETWFNHLR 494
[19][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 153 bits (387), Expect = 8e-36
Identities = 85/192 (44%), Positives = 115/192 (59%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++V G+PSG ALTV++NS+FNE LIR+ +R + RF Q V L++Y
Sbjct: 1705 RKSICGARVYEVRAGIPSGCALTVLLNSIFNEFLIRFVWRTTIIGVPRERFSQYVTLLIY 1764
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNLI+V P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F K
Sbjct: 1765 GDDNLIAVHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRK 1824
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
L+ G + APLD+ ++++SL +T H L NV+ AL+ELY
Sbjct: 1825 LNDGTVYAPLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELY 1869
Query: 543 LHNDSKEFQRVQ 578
LH + F ++
Sbjct: 1870 LHGNETWFNHLR 1881
[20][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 151 bits (382), Expect = 3e-35
Identities = 80/192 (41%), Positives = 118/192 (61%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V+ G+PSG ALTVV+NS+F E+L+RY ++K+ P K F + V LI Y
Sbjct: 1777 RLSICGNQVYATEAGIPSGCALTVVLNSIFKELLMRYCFKKIVPPVYKECFDRCVVLITY 1836
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDN+ +VA S +F G+A+++ +A+ V ITDG DK TI +P EL+FLKR F++
Sbjct: 1837 GDDNVFTVAQSVMQYFTGDALKMQMAKLGVTITDGKDKSLSTIPARPLLELEFLKRGFVR 1896
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
G+I APL+ +I SSL ++ S D++++L+ NVN AL+ELY
Sbjct: 1897 SSGGMINAPLEKLSIMSSLVYIR---------------SDGSDMLQKLLDNVNTALVELY 1941
Query: 543 LHNDSKEFQRVQ 578
LH D F+ V+
Sbjct: 1942 LHGDRTYFESVR 1953
[21][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 150 bits (378), Expect = 9e-35
Identities = 81/192 (42%), Positives = 118/192 (61%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++ G+PSG ALTVV+NS+FNE+L+RY Y+K+ P + F + V LI Y
Sbjct: 317 RLSICGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYKKIVPPIYRECFDRCVVLITY 376
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDN+ +V+ S + F G+A++ +A V ITDG DK TI +P EL+FLKR F K
Sbjct: 377 GDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKK 436
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
+ G+I APL+ +I SSL ++ S D++++LV NVN AL+ELY
Sbjct: 437 GNGGLIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVELY 481
Query: 543 LHNDSKEFQRVQ 578
LH D + + V+
Sbjct: 482 LHQDREYSESVR 493
[22][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 150 bits (378), Expect = 9e-35
Identities = 81/192 (42%), Positives = 118/192 (61%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++ G+PSG ALTVV+NS+FNE+L+RY Y+K+ P + F + V LI Y
Sbjct: 1776 RLSICGSQVYETEAGIPSGCALTVVINSIFNELLMRYCYKKIVPPIYRECFDRCVVLITY 1835
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDN+ +V+ S + F G+A++ +A V ITDG DK TI +P EL+FLKR F K
Sbjct: 1836 GDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKK 1895
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
+ G+I APL+ +I SSL ++ S D++++LV NVN AL+ELY
Sbjct: 1896 GNGGLIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVELY 1940
Query: 543 LHNDSKEFQRVQ 578
LH D + + V+
Sbjct: 1941 LHQDREYSESVR 1952
[23][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 147 bits (371), Expect = 6e-34
Identities = 79/192 (41%), Positives = 116/192 (60%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++ G+PSG ALTVV+NS+FNE+L+RY ++K+ P + F + V LI Y
Sbjct: 1778 RLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYRECFDRCVVLITY 1837
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDN+ +V+ S F G+A++ +A V ITDG DK TI +P EL+FLKR K
Sbjct: 1838 GDDNVFTVSQSIMESFTGDALKAEMANVGVTITDGKDKSLATIPARPLLELEFLKRGIKK 1897
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
+ G+I APL+ +I SSL ++ S D++++LV NVN AL+EL+
Sbjct: 1898 GNGGMIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVELF 1942
Query: 543 LHNDSKEFQRVQ 578
LH D + F V+
Sbjct: 1943 LHQDKEYFDSVR 1954
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 135 bits (339), Expect = 3e-30
Identities = 78/193 (40%), Positives = 114/193 (59%), Gaps = 1/193 (0%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G++V+ V G+PSG ALTVV+NS+FNEILIRY YRK+ P P F + V L+VY
Sbjct: 1756 RRSICGRQVYMVRGGMPSGCALTVVINSIFNEILIRYVYRKVTPAPACNFFNKYVRLMVY 1815
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDDNL+++ +F+G I+ +A + ITDG+DK + T+E KP L+FLKR F
Sbjct: 1816 GDDNLLTIKEEVIPFFDGPVIKREMASVGITITDGTDKSSLTLERKPLASLEFLKRGFRV 1875
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
+ G++ APLD T++++ L++L + F + NV L E+
Sbjct: 1876 QENGLVVAPLDKTSMYTRLFYLPLALMAFIPGYFSKG-------------NVKSFLEEIV 1922
Query: 543 LH-NDSKEFQRVQ 578
LH N +EF RV+
Sbjct: 1923 LHPNHRREFYRVR 1935
[25][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 135 bits (339), Expect = 3e-30
Identities = 75/188 (39%), Positives = 113/188 (60%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V
Sbjct: 1472 RYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMV 1531
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L+ YGDDNLISV+ A+ FNG ++ +A+ V ITDG DK +PT+E + DFLK
Sbjct: 1532 KLVTYGDDNLISVSHVVANVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLK 1591
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F KL+ V +P + +++++ L+++ + +D E ++N+N
Sbjct: 1592 RGF-KLNGLVYDSPEEKSSLWAQLHYVNTT---------------SLDKQEAYLVNLNNV 1635
Query: 528 LMELYLHN 551
L ELY+H+
Sbjct: 1636 LKELYMHS 1643
[26][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 133 bits (335), Expect = 9e-30
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V
Sbjct: 325 RYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMV 384
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L+ YGDDNLISV+ AS FNG ++ +A+ V ITDG DK +PT+E + DFLK
Sbjct: 385 KLVTYGDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLK 444
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F KL+ + +P + +++++ L+++ + +D E ++N+N
Sbjct: 445 RGF-KLNGLIYDSPEEKSSLWAQLHYVNTT---------------NLDKQEAYLVNLNNV 488
Query: 528 LMELYLHN 551
L ELY+++
Sbjct: 489 LKELYMYS 496
[27][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 133 bits (335), Expect = 9e-30
Identities = 74/188 (39%), Positives = 113/188 (60%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V
Sbjct: 1472 RYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMV 1531
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L+ YGDDNLISV+ AS FNG ++ +A+ V ITDG DK +PT+E + DFLK
Sbjct: 1532 KLVTYGDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLK 1591
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F KL+ + +P + +++++ L+++ + +D E ++N+N
Sbjct: 1592 RGF-KLNGLIYDSPEEKSSLWAQLHYVNTT---------------NLDKQEAYLVNLNNV 1635
Query: 528 LMELYLHN 551
L ELY+++
Sbjct: 1636 LKELYMYS 1643
[28][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 128 bits (321), Expect = 4e-28
Identities = 68/144 (47%), Positives = 96/144 (66%), Gaps = 2/144 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++V G+PSGFALTV NS+FNEIL+R AYR L P E+ F V LIVY
Sbjct: 1881 RISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLVPDIERPFFSNNVVLIVY 1940
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEPKPFWELDFLKRKFL 359
GDDN++ + P+ S FNG I+ + E+ +KITDG+DK +P I+ +P + +FLKR +
Sbjct: 1941 GDDNVLGIHPNIESVFNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQCEFLKRTWR 2000
Query: 360 K-LDTGVIQAPLDMTAIFSSLYWL 428
K G+ +APL T+IFS L ++
Sbjct: 2001 KDRQYGLYRAPLVETSIFSCLRYV 2024
[29][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 127 bits (318), Expect = 8e-28
Identities = 68/144 (47%), Positives = 97/144 (67%), Gaps = 2/144 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++V G+PSGFALTV NS+FNEIL+R AYR L P+ E+ F V LIVY
Sbjct: 1882 RISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLVPEIERPFFSNNVVLIVY 1941
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEPKPFWELDFLKRKFL 359
GDDN++ + P+ S FNG AI+ + E+ +KITDG+DK +P I +P + +FLKR +
Sbjct: 1942 GDDNVLGIHPNIESAFNGNAIKAYMKEELGIKITDGADKLSPVICARPLEQCEFLKRTWR 2001
Query: 360 K-LDTGVIQAPLDMTAIFSSLYWL 428
K G+ +APL T+I+S L ++
Sbjct: 2002 KDRQYGLYRAPLVETSIYSCLRYV 2025
[30][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 125 bits (313), Expect = 3e-27
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = +3
Query: 54 SGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFN 233
SGFALTVVVNSVFNEILIRYAY+KLAP PE+ RF TVCL+VYGDDNLISV+PS ASWF
Sbjct: 1 SGFALTVVVNSVFNEILIRYAYKKLAPVPERNRFGSTVCLLVYGDDNLISVSPSIASWFT 60
Query: 234 GEAIRVTLAEKK 269
GEAIR+TLAEKK
Sbjct: 61 GEAIRITLAEKK 72
[31][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 122 bits (305), Expect = 3e-26
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ +
Sbjct: 1465 RMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFI 1524
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLK
Sbjct: 1525 SLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLK 1584
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F ++ + AP D +++S L++++ +++ E ++N+
Sbjct: 1585 RNFKQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNV 1629
Query: 528 LMELYLHNDSKEFQ 569
L ELYLH+ + Q
Sbjct: 1630 LRELYLHSPEEACQ 1643
[32][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 122 bits (305), Expect = 3e-26
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ +
Sbjct: 1465 RMAICKKNVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFI 1524
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLK
Sbjct: 1525 SLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLK 1584
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F ++ + AP D +++S L++++ +++ E ++N+
Sbjct: 1585 RNFKQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNV 1629
Query: 528 LMELYLHNDSKEFQ 569
L ELYLH+ + Q
Sbjct: 1630 LRELYLHSPEEARQ 1643
[33][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 120 bits (302), Expect = 6e-26
Identities = 74/197 (37%), Positives = 113/197 (57%), Gaps = 7/197 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL AP+ F + +
Sbjct: 324 RLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLI 383
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L+ YGDDNLISV +F+G+ ++ +LA+ V ITDG DK + + + E DFLK
Sbjct: 384 GLVTYGDDNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLK 443
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F++ + + AP D +++S L+++ + +K Y + NV
Sbjct: 444 RTFVQRSSTIWDAPEDKASLWSQLHYV-----NCNNCEKEVAY----------LTNVVNV 488
Query: 528 LMELYLHN--DSKEFQR 572
L ELY+H+ ++ EF+R
Sbjct: 489 LRELYMHSPREATEFRR 505
[34][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 120 bits (302), Expect = 6e-26
Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + +++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ +
Sbjct: 324 RMAICKKDIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFI 383
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLK
Sbjct: 384 SLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLK 443
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F ++ + AP D +++S L++++ +++ E ++N+
Sbjct: 444 RNFKQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNV 488
Query: 528 LMELYLHN 551
L ELYLH+
Sbjct: 489 LRELYLHS 496
[35][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 120 bits (302), Expect = 6e-26
Identities = 74/197 (37%), Positives = 113/197 (57%), Gaps = 7/197 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL AP+ F + +
Sbjct: 1479 RLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLI 1538
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L+ YGDDNLISV +F+G+ ++ +LA+ V ITDG DK + + + E DFLK
Sbjct: 1539 GLVTYGDDNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLK 1598
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F++ + + AP D +++S L+++ + +K Y + NV
Sbjct: 1599 RTFVQRSSTIWDAPEDKASLWSQLHYV-----NCNNCEKEVAY----------LTNVVNV 1643
Query: 528 LMELYLHN--DSKEFQR 572
L ELY+H+ ++ EF+R
Sbjct: 1644 LRELYMHSPREATEFRR 1660
[36][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 120 bits (302), Expect = 6e-26
Identities = 69/188 (36%), Positives = 106/188 (56%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + +++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ +
Sbjct: 1464 RMAICKKDIWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFRNFI 1523
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLK
Sbjct: 1524 SLCVYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLK 1583
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F ++ + AP D +++S L++++ +++ E ++N+
Sbjct: 1584 RNFKQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNV 1628
Query: 528 LMELYLHN 551
L ELYLH+
Sbjct: 1629 LRELYLHS 1636
[37][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 120 bits (301), Expect = 8e-26
Identities = 67/177 (37%), Positives = 107/177 (60%), Gaps = 6/177 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK----PEKCR-FQQTV 167
R++ V V++V G+PSGF LTVV+N +FNE+L+RY ++K+ + P +C F +
Sbjct: 349 RFSVVKGNVWRVEGGIPSGFPLTVVMNGIFNELLVRYCFKKIMREGGATPLECSAFDSYI 408
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
+VYGDDNLISV+P FNG+ ++ +A V ITDG DK PT+E +P + DFLK
Sbjct: 409 RFVVYGDDNLISVSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLK 468
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGE-VDVIEELVLN 515
R F++ V AP + +++++ L++++ Y+G V+VI EL ++
Sbjct: 469 RGFIQRSELVWDAPEERSSLYTQLHYVSTKMQSLE-----DAYTGNLVNVIRELYMH 520
[38][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 120 bits (300), Expect = 1e-25
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ V
Sbjct: 1465 RMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFV 1524
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + + DFLK
Sbjct: 1525 SLCVYGDDNLISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLK 1584
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F ++ + AP D +++S L++++ +++ E ++N+
Sbjct: 1585 RNFKQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNV 1629
Query: 528 LMELYLHNDSKEFQ 569
L ELYLH+ + Q
Sbjct: 1630 LRELYLHSPEEARQ 1643
[39][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 118 bits (296), Expect = 3e-25
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 5/194 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ V
Sbjct: 1465 RMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFV 1524
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
L VYGDDN ISV +F+G ++ LA + ITDG DK + T++ + + DFLK
Sbjct: 1525 SLCVYGDDNFISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLK 1584
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F ++ + AP D +++S L++++ +++ E ++N+
Sbjct: 1585 RNFKQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNV 1629
Query: 528 LMELYLHNDSKEFQ 569
L ELYLH+ + Q
Sbjct: 1630 LRELYLHSPEEARQ 1643
[40][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 115 bits (288), Expect = 2e-24
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCRFQQTV 167
RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K + F + V
Sbjct: 126 RYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGLISISFDKYV 185
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLK
Sbjct: 186 GMVTYGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLK 245
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F K G+ AP + ++++ L+++ + + H K + V+V+ EL +
Sbjct: 246 RGFRKDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYM 297
[41][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 115 bits (288), Expect = 2e-24
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCRFQQTV 167
RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K + F + V
Sbjct: 1470 RYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGLISISFDKYV 1529
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLK
Sbjct: 1530 GMVTYGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLK 1589
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F K G+ AP + ++++ L+++ + + H K + V+V+ EL +
Sbjct: 1590 RGFRKDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYM 1641
[42][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 115 bits (288), Expect = 2e-24
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCRFQQTV 167
RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + K + F + V
Sbjct: 1473 RYAICKSDVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMRKQKVPGLISISFDKYV 1532
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLK
Sbjct: 1533 GMVTYGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLK 1592
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F K G+ AP + ++++ L+++ + + H K + V+V+ EL +
Sbjct: 1593 RGFRKDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYM 1644
[43][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 114 bits (285), Expect = 5e-24
Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A V+++ CG+PSGF LTV+ NS+FNEIL+RY Y+ L AP F+ +
Sbjct: 325 RLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLI 384
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNLISV +F+G ++ +A + ITDG DK + T+E + + DFLK
Sbjct: 385 SMVTYGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLK 444
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R FLK + + AP + ++++ L+++ + + + + + V+V+ EL ++
Sbjct: 445 RGFLKRSSVLWDAPEEKASLWAQLHYVNVN----NCEMQVAYMTNLVNVLRELYMHDPTE 500
Query: 528 LME 536
++E
Sbjct: 501 MVE 503
[44][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 114 bits (285), Expect = 5e-24
Identities = 62/183 (33%), Positives = 105/183 (57%), Gaps = 5/183 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A V+++ CG+PSGF LTV+ NS+FNEIL+RY Y+ L AP F+ +
Sbjct: 1476 RLAISRDSVWRIECGIPSGFPLTVICNSIFNEILVRYHYKLLLQEHNAPNMYVQSFKNLI 1535
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNLISV +F+G ++ +A + ITDG DK + T+E + + DFLK
Sbjct: 1536 SMVTYGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLK 1595
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R FLK + + AP + ++++ L+++ + + + + + V+V+ EL ++
Sbjct: 1596 RGFLKRSSVLWDAPEEKASLWAQLHYVNVN----NCEMQVAYMTNLVNVLRELYMHDPTE 1651
Query: 528 LME 536
++E
Sbjct: 1652 MVE 1654
[45][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 112 bits (281), Expect = 2e-23
Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 2/188 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAYR R F V L+
Sbjct: 288 RYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAYRMCFADNPMIRESFDTHVALV 347
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S FNGE + + +TDG DK I + + DFLKR F
Sbjct: 348 VYGDDNLISVSDAISSKFNGEFLVDFFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNF 407
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
L G P+ +++ L+++ K +++ + V N+N L E
Sbjct: 408 KVLPDGEWVGPMSRESLWPQLHFVRAKK---------------LEMADAYVANLNNILRE 452
Query: 537 LYLHNDSK 560
L+LH +
Sbjct: 453 LWLHGSEE 460
[46][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 112 bits (281), Expect = 2e-23
Identities = 67/188 (35%), Positives = 99/188 (52%), Gaps = 2/188 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAYR R F V L+
Sbjct: 1473 RYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAYRMCFADNPMIRESFDTHVALV 1532
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S FNGE + + +TDG DK I + + DFLKR F
Sbjct: 1533 VYGDDNLISVSDAISSKFNGEFLVDFFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNF 1592
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
L G P+ +++ L+++ K +++ + V N+N L E
Sbjct: 1593 KVLPDGEWVGPMSRESLWPQLHFVRAKK---------------LEMADAYVANLNNILRE 1637
Query: 537 LYLHNDSK 560
L+LH +
Sbjct: 1638 LWLHGSEE 1645
[47][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 112 bits (279), Expect = 3e-23
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V
Sbjct: 327 RYAICKNSVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYV 386
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++VYGDDNL+SV+ +F+G+ ++ LA ++ ITDG DK +P ++ + + DFLK
Sbjct: 387 SMVVYGDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLK 446
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F + G+ AP + ++++ L+++ + + H K + V V+ EL +
Sbjct: 447 RGF--KNRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNL----VTVLRELFM 496
[48][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 112 bits (279), Expect = 3e-23
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V
Sbjct: 1471 RYAICKNSVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYV 1530
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++VYGDDNL+SV+ +F+G+ ++ LA ++ ITDG DK +P ++ + + DFLK
Sbjct: 1531 SMVVYGDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLK 1590
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F + G+ AP + ++++ L+++ + + H K + V V+ EL +
Sbjct: 1591 RGF--KNRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNL----VTVLRELFM 1640
[49][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 111 bits (278), Expect = 4e-23
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA-----PKPEKCRFQQTV 167
RYA +V++V CG+PSGF LTV+ NS+FNE+L+RY+Y K+ P F V
Sbjct: 323 RYALCKGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQARVPATITYGFSTFV 382
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV + F+G ++ L + ITDG DK +P + + + DFLK
Sbjct: 383 KMVTYGDDNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLK 442
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F K V P + ++++ L+++T + + H E ++NV
Sbjct: 443 RGFKKESDVVWVGPEEKESLWAQLHYVTTNNLEKH---------------EAYLVNVVNV 487
Query: 528 LMELYLHN 551
+ ELYLH+
Sbjct: 488 IRELYLHD 495
[50][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 111 bits (278), Expect = 4e-23
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA-----PKPEKCRFQQTV 167
RYA +V++V CG+PSGF LTV+ NS+FNE+L+RY+Y K+ P F V
Sbjct: 1469 RYALCKGEVWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQARVPATITYGFSTFV 1528
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV + F+G ++ L + ITDG DK +P + + + DFLK
Sbjct: 1529 KMVTYGDDNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLK 1588
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVA 527
R F K V P + ++++ L+++T + + H E ++NV
Sbjct: 1589 RGFKKESDVVWVGPEEKESLWAQLHYVTTNNLEKH---------------EAYLVNVVNV 1633
Query: 528 LMELYLHN 551
+ ELYLH+
Sbjct: 1634 IRELYLHD 1641
[51][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 111 bits (277), Expect = 5e-23
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V
Sbjct: 1473 RYAICKSTVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMREQKVPDLIPISFDKYV 1532
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLK
Sbjct: 1533 GMVTYGDDNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLK 1592
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F K +G +P + ++++ L+++ + + H K + V+V+ EL +
Sbjct: 1593 RGFKKDRSGFFWNSPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYM 1644
[52][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 111 bits (277), Expect = 5e-23
Identities = 53/68 (77%), Positives = 61/68 (89%)
Frame = +3
Query: 93 NEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKV 272
+EILIRYAY+KLAPKP++ F +VCL+VYGDDNLISV+PS ASWF GEAIRV LAEKK+
Sbjct: 9 HEILIRYAYKKLAPKPQRNLFGVSVCLLVYGDDNLISVSPSIASWFTGEAIRVCLAEKKI 68
Query: 273 KITDGSDK 296
KITDGSDK
Sbjct: 69 KITDGSDK 76
[53][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 111 bits (277), Expect = 5e-23
Identities = 64/176 (36%), Positives = 104/176 (59%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA V++V CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V
Sbjct: 325 RYAICKSTVWRVECGIPSGFPLTVICNSIFNEILIRYSFKAIMREQKVPDLIPISFDKYV 384
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++ YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLK
Sbjct: 385 GMVTYGDDNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLK 444
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F K +G +P + ++++ L+++ + + H K + V+V+ EL +
Sbjct: 445 RGFKKDRSGFFWNSPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYM 496
[54][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 110 bits (276), Expect = 6e-23
Identities = 69/188 (36%), Positives = 100/188 (53%), Gaps = 2/188 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLI 176
RYA G+ +++V G+PSGF LTV+VNS+ NEILI+YAY K R F V ++
Sbjct: 324 RYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMV 383
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S FNG + + +K+TDG DK IE + + DFLKRKF
Sbjct: 384 VYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKF 443
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
+ G + ++ L+++ K V++ E + N N L E
Sbjct: 444 KENADGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRE 488
Query: 537 LYLHNDSK 560
L+L + K
Sbjct: 489 LWLGSPEK 496
[55][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 110 bits (276), Expect = 6e-23
Identities = 69/188 (36%), Positives = 100/188 (53%), Gaps = 2/188 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLI 176
RYA G+ +++V G+PSGF LTV+VNS+ NEILI+YAY K R F V ++
Sbjct: 1467 RYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTYVAMV 1526
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S FNG + + +K+TDG DK IE + + DFLKRKF
Sbjct: 1527 VYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKF 1586
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
+ G + ++ L+++ K V++ E + N N L E
Sbjct: 1587 KENADGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRE 1631
Query: 537 LYLHNDSK 560
L+L + K
Sbjct: 1632 LWLGSPEK 1639
[56][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 110 bits (276), Expect = 6e-23
Identities = 68/194 (35%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YA+R R F V L+
Sbjct: 1473 RYAICEKLLYRVENGIPSGFPLTVIVNSILNEILVKYAFRMCFADNPMVRESFDTHVSLV 1532
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + ++ FNGE + + + +TDG DK I + + DFLKR F
Sbjct: 1533 VYGDDNLISVSDAISAKFNGEFLVDFFLKLSITVTDGVDKTKKGISFRRLADCDFLKRGF 1592
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
L G P+ +++ L+++ K +++ + V N+N L E
Sbjct: 1593 KNLPDGEWIGPMSRESLWPQLHFVRAKK---------------LEMADAYVANLNNILRE 1637
Query: 537 LYLH--NDSKEFQR 572
L+LH N++ E +R
Sbjct: 1638 LWLHSANEATELRR 1651
[57][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 110 bits (276), Expect = 6e-23
Identities = 65/176 (36%), Positives = 103/176 (58%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA-----PKPEKCRFQQTV 167
RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V
Sbjct: 1471 RYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPDMIPVSFDEYV 1530
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++VYGDDNL+SV+ +F+G+ ++ LA + ITDG DK +P ++ + + DFLK
Sbjct: 1531 SMVVYGDDNLLSVSEVIKPYFDGKRLKDFLATLHITITDGKDKTSPFLQFRRLEDCDFLK 1590
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F + G+ AP D ++++ L+++ + + H K + V V+ EL +
Sbjct: 1591 RGF--KNRGLYWDAPEDKESLWAQLHYVNANNLEKHEAYKTNL----VTVLRELFM 1640
[58][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 110 bits (275), Expect = 8e-23
Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTVVVNS+ NEIL++YAY A P + F V ++
Sbjct: 322 RYAMCNRILYRVENGIPSGFPLTVVVNSILNEILVKYAYWHCFADNPTVQSNFDAHVSMV 381
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 382 VYGDDNLISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 441
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G + P+ +++ L+++ K +++ E + N N L E
Sbjct: 442 KMNPDGTWRCPMSKESLWPQLHYVKAKK---------------LEMAEAYINNCNNILRE 486
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 487 LWLHDVAEAKEFR 499
[59][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 110 bits (275), Expect = 8e-23
Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTVVVNS+ NEIL++YAY A P + F V ++
Sbjct: 1494 RYAMCNRILYRVENGIPSGFPLTVVVNSILNEILVKYAYWHCFADNPTVQSNFDAHVSMV 1553
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1554 VYGDDNLISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 1613
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G + P+ +++ L+++ K +++ E + N N L E
Sbjct: 1614 KMNPDGTWRCPMSKESLWPQLHYVKAKK---------------LEMAEAYINNCNNILRE 1658
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 1659 LWLHDVAEAKEFR 1671
[60][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 109 bits (273), Expect = 1e-22
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 324 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMV 383
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 384 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 443
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 444 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 488
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 489 LWLHDVKEAKEFR 501
[61][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 109 bits (273), Expect = 1e-22
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 1495 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMV 1554
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1614
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 1660 LWLHDVKEAKEFR 1672
[62][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 109 bits (273), Expect = 1e-22
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 1394 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPNVQSNFDAHVSMV 1453
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1454 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1513
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1514 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1558
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 1559 LWLHDVREAKEFR 1571
[63][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 109 bits (273), Expect = 1e-22
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 1495 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMV 1554
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1614
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 1660 LWLHDVKEAKEFR 1672
[64][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 109 bits (273), Expect = 1e-22
Identities = 69/188 (36%), Positives = 99/188 (52%), Gaps = 2/188 (1%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR--FQQTVCLI 176
RYA G+ +++V G+PSGF LTV+VNS+ NEILI+YAY K R F V +
Sbjct: 1467 RYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHFDTHVAMA 1526
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S FNG + +A +K+TDG DK IE + DFLKR+F
Sbjct: 1527 VYGDDNLISVSEAISSRFNGNFLVNFMANLGIKVTDGVDKTKIGIEFRTIENCDFLKRRF 1586
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
+ G + ++ L+++ K V++ E + N N L E
Sbjct: 1587 KENTDGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRE 1631
Query: 537 LYLHNDSK 560
L+L + K
Sbjct: 1632 LWLEDPGK 1639
[65][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 109 bits (273), Expect = 1e-22
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 219 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFGDNPSVQSNFDAHVSMV 278
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 279 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 338
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 339 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILCE 383
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 384 LWLHDVKEAKEFR 396
[66][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 108 bits (270), Expect = 3e-22
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 6/176 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA V+KV CG+PSGF LTV+ NS+FNEILIRY+++ + P F + V
Sbjct: 1471 RYAICKNTVWKVECGIPSGFPLTVICNSIFNEILIRYSFKAILRSQKIPDMISVSFDEYV 1530
Query: 168 CLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
++VYGDDNL+SV +F+G+ ++ LA + ITDG DK +P ++ + + DFLK
Sbjct: 1531 SMVVYGDDNLLSVNEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFLQFRCLEDCDFLK 1590
Query: 348 RKFLKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 512
R F + G+ AP + ++++ L+++ + + H K + V V+ EL +
Sbjct: 1591 RGF--KNRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNL----VTVLRELFM 1640
[67][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 108 bits (269), Expect = 4e-22
Identities = 66/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 1495 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMV 1554
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 VYGDDNLISVSDAISSRFDGNFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1614
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 537 LYLHN--DSKEFQ 569
L+LH+ +++EF+
Sbjct: 1660 LWLHDVKEAEEFR 1672
[68][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 108 bits (269), Expect = 4e-22
Identities = 67/193 (34%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKP-EKCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 1494 RYAMCNRILYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFVDNPIVQSNFDAHVSMV 1553
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1554 VYGDDNLISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 1613
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1614 KLNPDGTWRSPMSKESLWPQLHYVKAKK---------------LEMAEAYINNCNNILRE 1658
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 1659 LWLHDVIEAKEFR 1671
[69][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 107 bits (268), Expect = 5e-22
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 4/192 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+VNS+ NEIL++YAY P + F V ++
Sbjct: 100 RYAMCNRVLYRVENGIPSGFPLTVIVNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSMV 159
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 160 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 219
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 220 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 264
Query: 537 LYLHN--DSKEF 566
L+LH+ ++K+F
Sbjct: 265 LWLHDVKEAKDF 276
[70][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 107 bits (266), Expect = 9e-22
Identities = 57/156 (36%), Positives = 93/156 (59%), Gaps = 9/156 (5%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP------EKCRFQQT 164
RYA G+ ++KV+CG+PSGF+LTV+VNS+ NE +R+A++++ + +
Sbjct: 427 RYAIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDRE 486
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDG---SDKDAPTIEPKPFWEL 335
V VYGDDNL+SV+ +S +N +I L E+ V + +G ++D P P P
Sbjct: 487 VHFAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPS-TC 545
Query: 336 DFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 443
DFLKR+F+ +G + APLD +++ +W+ S+D
Sbjct: 546 DFLKRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQD 581
[71][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 102 bits (253), Expect = 3e-20
Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 4/193 (2%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-RKLAPKPE-KCRFQQTVCLI 176
RYA + +++V G+PSGF LTV+ NS+ NEIL++YAY P + F V +
Sbjct: 1495 RYAMCNRVLYRVENGIPSGFPLTVIGNSILNEILVKYAYWHCFEDNPSVQSNFDAHVSME 1554
Query: 177 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF 356
YGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 EYGDDNLISVSDAISSKFDGSFLVSFIEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 1614
Query: 357 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 536
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 537 LYLHN--DSKEFQ 569
L+LH+ ++KEF+
Sbjct: 1660 LWLHDVKEAKEFR 1672
[72][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 92.0 bits (227), Expect = 3e-17
Identities = 68/196 (34%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQ 161
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K
Sbjct: 1429 YTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFN 1488
Query: 162 TVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWEL 335
+ + VYGDDNL++V P W+ AI L V I +G DK D + + EL
Sbjct: 1489 KLFVAVYGDDNLVAV-PMELQWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSEL 1547
Query: 336 DFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEV 488
FL R F + G +QAPL +I +YW+ PS + T + + + G
Sbjct: 1548 TFLSRGFKRHRLGYVQAPLKWVSIIEPMYWIRPSVGCPDALAMLENIDTGVREAFHHGP- 1606
Query: 489 DVIEELVLNVNVALME 536
V E+LV +V AL E
Sbjct: 1607 QVFEKLVTDVQNALKE 1622
[73][TOP]
>UniRef100_UPI000043F357 RNA-dependent RNA polymerase n=1 Tax=Cherry rasp leaf virus
RepID=UPI000043F357
Length = 707
Score = 91.7 bits (226), Expect = 4e-17
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE------KCRFQQT 164
RY ++ V G+PSGF LTV+VNS+ N I ++Y KL + E F+Q
Sbjct: 332 RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQM 391
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
V YGDDNL+SV FN I LAE V + +G+DK+ + P P ++DF
Sbjct: 392 VAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDF 451
Query: 342 LKRKFLKLDTGVIQAPLDMTAIFSSLYWL 428
LKRKF+ G + APL+ I L+W+
Sbjct: 452 LKRKFVHYQ-GHVVAPLNPVNITERLHWI 479
[74][TOP]
>UniRef100_Q6EWG9 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q6EWG9_CRLV
Length = 2250
Score = 91.7 bits (226), Expect = 4e-17
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE------KCRFQQT 164
RY ++ V G+PSGF LTV+VNS+ N I ++Y KL + E F+Q
Sbjct: 1875 RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQM 1934
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
V YGDDNL+SV FN I LAE V + +G+DK+ + P P ++DF
Sbjct: 1935 VAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDF 1994
Query: 342 LKRKFLKLDTGVIQAPLDMTAIFSSLYWL 428
LKRKF+ G + APL+ I L+W+
Sbjct: 1995 LKRKFVHYQ-GHVVAPLNPVNITERLHWI 2022
[75][TOP]
>UniRef100_Q5DIW8 Polyprotein n=1 Tax=Cherry rasp leaf virus RepID=Q5DIW8_CRLV
Length = 2235
Score = 91.7 bits (226), Expect = 4e-17
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE------KCRFQQT 164
RY ++ V G+PSGF LTV+VNS+ N I ++Y KL + E F+Q
Sbjct: 1860 RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQM 1919
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
V YGDDNL+SV FN I LAE V + +G+DK+ + P P ++DF
Sbjct: 1920 VAYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDF 1979
Query: 342 LKRKFLKLDTGVIQAPLDMTAIFSSLYWL 428
LKRKF+ G + APL+ I L+W+
Sbjct: 1980 LKRKFVHYQ-GHVVAPLNPVNITERLHWI 2007
[76][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 91.7 bits (226), Expect = 4e-17
Identities = 68/196 (34%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQ 161
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K
Sbjct: 1429 YTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFN 1488
Query: 162 TVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWEL 335
+ + VYGDDNL++V P W+ AI L V I +G DK D + + EL
Sbjct: 1489 KLFVAVYGDDNLVAV-PMELHWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSEL 1547
Query: 336 DFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEV 488
FL R F + G +QAPL +I +YW+ PS + T + + + G
Sbjct: 1548 TFLSRGFKRHRLGYVQAPLKWVSIIEPMYWIRPSVGCPDALAMLENIDTGVREAFHHGP- 1606
Query: 489 DVIEELVLNVNVALME 536
V E+LV +V AL E
Sbjct: 1607 QVFEKLVTDVQNALKE 1622
[77][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 90.1 bits (222), Expect = 1e-16
Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-APKPEKC-----RFQQT 164
RY ++ V G+PSGF LTV+VNS+ N + +AY KL + + K F+
Sbjct: 332 RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTL 391
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
V VYGDDNLISV + FN I L E V + +G+DK+ + P P ++DF
Sbjct: 392 VSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDF 451
Query: 342 LKRKFLKLDTGVIQAPLDMTAIFSSLYWL 428
LKR+F L G I APL+ I L+W+
Sbjct: 452 LKRRFTTLQ-GHIVAPLNTVNITERLHWV 479
[78][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 90.1 bits (222), Expect = 1e-16
Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-APKPEKC-----RFQQT 164
RY ++ V G+PSGF LTV+VNS+ N + +AY KL + + K F+
Sbjct: 1702 RYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTL 1761
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
V VYGDDNLISV + FN I L E V + +G+DK+ + P P ++DF
Sbjct: 1762 VSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDF 1821
Query: 342 LKRKFLKLDTGVIQAPLDMTAIFSSLYWL 428
LKR+F L G I APL+ I L+W+
Sbjct: 1822 LKRRFTTLQ-GHIVAPLNTVNITERLHWV 1849
[79][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 87.4 bits (215), Expect = 7e-16
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQ 161
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K
Sbjct: 1432 YTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPHDFN 1491
Query: 162 TVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWEL 335
+ + VYGDDNL++V P W++ I L V I +G DK D ++ + EL
Sbjct: 1492 QLFVAVYGDDNLVAV-PLHLQWYSLPNIAQELDMVNVVIKNGLDKSMDVNEVQFQDLSEL 1550
Query: 336 DFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEV 488
FL R F + G APL +I +YW+ P+ + T + + + G+V
Sbjct: 1551 TFLSRGFKRHALGYHMAPLKWVSIIEPMYWIRPAPGCPDAQAMMENVETGIREAFHHGQV 1610
Query: 489 DVIEELVLNVNVALME 536
E+LV +V AL E
Sbjct: 1611 -AYEKLVADVQEALNE 1625
[80][TOP]
>UniRef100_A9UC61 Polyprotein n=1 Tax=Tomato marchitez virus RepID=A9UC61_9SECO
Length = 2151
Score = 87.4 bits (215), Expect = 7e-16
Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 20/197 (10%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP---------EKCRFQ 158
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P + F
Sbjct: 1430 YTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFN 1489
Query: 159 QTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWE 332
Q + + VYGDDNL++V P W++ I L V I +G DK D ++ + E
Sbjct: 1490 Q-LFIAVYGDDNLVAV-PLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSE 1547
Query: 333 LDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGE 485
L FL R F + G APL +I +YW+ P+ + T + + + G
Sbjct: 1548 LTFLSRGFKRHALGYHMAPLKWVSIIEPMYWIRPAPGCPDTQAMMENVETGIREAFHHGR 1607
Query: 486 VDVIEELVLNVNVALME 536
V ++LVL+V AL E
Sbjct: 1608 V-AYDKLVLDVQTALDE 1623
[81][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
RepID=Q769F2_SDV
Length = 374
Score = 87.0 bits (214), Expect = 9e-16
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 8/190 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQT 164
RY +++++ G PSGFA TV++NSV NE +++++ + A + C F +
Sbjct: 22 RYLISDGVLYEIHGGTPSGFAPTVMLNSVVNEFYLKWSWMGIMREAGYAKEASLCAFHEA 81
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
+ VYGDDN +SVA AS +N + I L+ VK+ DG+ + TI+P P E+DF
Sbjct: 82 TEISVYGDDNFVSVATPVASLYNLKTISEFLSRVGVKLGDGA--KSGTIKPFIPLEEVDF 139
Query: 342 LKRKFL-KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNV 518
LKRKF+ + I PL+ +I L+++ G D I L LN+
Sbjct: 140 LKRKFVADSKSTAILCPLNKRSIEERLFYV----------------RGGQDEIAALELNI 183
Query: 519 NVALMELYLH 548
AL E + H
Sbjct: 184 ATALCEAFFH 193
[82][TOP]
>UniRef100_A0N0G3 Polyprotein (Fragment) n=1 Tax=Tomato apex necrosis virus
RepID=A0N0G3_9VIRU
Length = 1943
Score = 85.1 bits (209), Expect = 4e-15
Identities = 65/197 (32%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP---------EKCRFQ 158
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P + F
Sbjct: 1222 YTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFN 1281
Query: 159 QTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWE 332
Q + + VYGDDNL++V P W++ I L V I +G DK D ++ + E
Sbjct: 1282 Q-LFIAVYGDDNLVAV-PLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSE 1339
Query: 333 LDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGE 485
L FL R F + G APL +I +YW+ P+ + T + + + G
Sbjct: 1340 LTFLSRGFKRHALGYHMAPLKWVSIIEPMYWIRPAPGCPDTQAMMENVETGIREAFHHGR 1399
Query: 486 VDVIEELVLNVNVALME 536
V ++LV +V AL E
Sbjct: 1400 V-AYDKLVSDVQTALDE 1415
[83][TOP]
>UniRef100_Q20LA1 Polyprotein 1 (Fragment) n=1 Tax=Raspberry ringspot virus
RepID=Q20LA1_9SECO
Length = 533
Score = 82.4 bits (202), Expect = 2e-14
Identities = 38/71 (53%), Positives = 51/71 (71%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R + G +V++V G+PSGFALTV NS+FNEIL+R AYR L P+ E+ F V LIVY
Sbjct: 461 RISICGSQVYRVEAGMPSGFALTVDFNSIFNEILVRCAYRSLVPEIERPFFSNNVALIVY 520
Query: 183 GDDNLISVAPS 215
GDDN++ + P+
Sbjct: 521 GDDNVMGIHPN 531
[84][TOP]
>UniRef100_UPI0000164A61 RNA dependent RNA polymerase n=1 Tax=Strawberry mottle virus
RepID=UPI0000164A61
Length = 694
Score = 82.0 bits (201), Expect = 3e-14
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA----PKPEKCRFQQTVC 170
R V + +++V G PSGFALTV++NSV N+ + +A+RK+ P R ++ C
Sbjct: 327 RRILVLRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHC 386
Query: 171 LI-VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
VYGDDN++S + +N I L V ++DG K ++ F ELDFLK
Sbjct: 387 TFSVYGDDNVVSFSLQVKDMYNLVTIAAELKTIGVNLSDGK-KTGNLVKWMEFSELDFLK 445
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHT 455
R+++ PL +AI L+W+ S+D T
Sbjct: 446 RRWVLYSGQGFLCPLHKSAIEERLFWVRSSEDSVET 481
[85][TOP]
>UniRef100_Q8UYV9 Polyprotein n=1 Tax=Strawberry mottle virus RepID=Q8UYV9_9SECO
Length = 1915
Score = 82.0 bits (201), Expect = 3e-14
Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 5/156 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA----PKPEKCRFQQTVC 170
R V + +++V G PSGFALTV++NSV N+ + +A+RK+ P R ++ C
Sbjct: 1548 RRILVLRDLYQVKGGTPSGFALTVIINSVVNQFYLMWAWRKIMSRIDPGLVPYRVMRSHC 1607
Query: 171 LI-VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
VYGDDN++S + +N I L V ++DG K ++ F ELDFLK
Sbjct: 1608 TFSVYGDDNVVSFSLQVKDMYNLVTIAAELKTIGVNLSDGK-KTGNLVKWMEFSELDFLK 1666
Query: 348 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHT 455
R+++ PL +AI L+W+ S+D T
Sbjct: 1667 RRWVLYSGQGFLCPLHKSAIEERLFWVRSSEDSVET 1702
[86][TOP]
>UniRef100_Q1G659 Polyprotein n=2 Tax=Black raspberry necrosis virus RepID=Q1G659_9SECO
Length = 2163
Score = 80.5 bits (197), Expect = 9e-14
Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 6/188 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK----LAPKPEKCRFQQTVC 170
R V +++ V G PSGFALTV++NS+ N+ + +A+RK ++P R +T C
Sbjct: 1609 RRILVLAELYHVRGGTPSGFALTVIINSMVNQFYLMWAWRKIMSRISPSMVTYRVMRTHC 1668
Query: 171 LI-VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLK 347
VYGDDN++S + + +N I L V ++DG K I+ F +LDFLK
Sbjct: 1669 TFSVYGDDNVVSFSLAVRDMYNLCTIADELKTIGVTLSDGK-KTGVLIKWTGFKDLDFLK 1727
Query: 348 RKFLKLDTG-VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNV 524
R++ +L+ G + PLD AI L+W+ S+D +E L N
Sbjct: 1728 RRW-ELEPGHGFKCPLDKMAIEERLFWVRKSEDN----------------MESLDDNCYS 1770
Query: 525 ALMELYLH 548
ALME + H
Sbjct: 1771 ALMEAFHH 1778
[87][TOP]
>UniRef100_Q9YZ97 Polyprotein (Fragment) n=1 Tax=Navel orange infectious mottling virus
RepID=Q9YZ97_SDV
Length = 872
Score = 79.7 bits (195), Expect = 1e-13
Identities = 65/196 (33%), Positives = 95/196 (48%), Gaps = 6/196 (3%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQT 164
RY V++++ G PSGFA TV++NS+ NE +++++ L A + F +
Sbjct: 519 RYLISDGYVYEIHGGTPSGFAPTVMINSIVNEFYLKWSWMGLMKEAGYAKEASLYAFHEA 578
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFL 344
+ +YGDDN +SVA AS +N + I L VK+ DG+ K T P E+DFL
Sbjct: 579 TEISLYGDDNFVSVATPVASLYNLKTISEFLRRIGVKLGDGA-KTGITKPFIPLEEVDFL 637
Query: 345 KRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNV 524
KR+F+ A TAI L P K K ++ G D + L LN+
Sbjct: 638 KRQFV--------ADAGSTAI------LCPLK-KISIEERLFYVKGGQDELAALELNMAT 682
Query: 525 ALMELYLHNDSKEFQR 572
AL E + H KE+ R
Sbjct: 683 ALCEAFFH--GKEYFR 696
[88][TOP]
>UniRef100_B4ZF30 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cycas necrotic
stunt virus RepID=B4ZF30_CNSV
Length = 73
Score = 79.7 bits (195), Expect = 1e-13
Identities = 39/73 (53%), Positives = 50/73 (68%)
Frame = +3
Query: 78 VNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTL 257
+NSV NEIL+RY ++ L P++ F V L+VYGDDNL+S A +FNGE I+ TL
Sbjct: 1 INSVLNEILMRYCFKVLVLGPQRNSFSTYVTLLVYGDDNLMSCTDKIAIYFNGETIKETL 60
Query: 258 AEKKVKITDGSDK 296
+K V ITDGSDK
Sbjct: 61 KKKNVTITDGSDK 73
[89][TOP]
>UniRef100_UPI00004FF342 polymerase n=1 Tax=Strawberry latent ringspot virus
RepID=UPI00004FF342
Length = 675
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R G +++V+ G+P GFALTV+VNS+ N L+R+++ + F V L V
Sbjct: 322 RLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS-SSLFFTDCVELAVV 380
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI-EPKPFWELDFLKRKFL 359
GDDNL+SV A FN + + LA + DGSDK+ + E P + DFLKR F
Sbjct: 381 GDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF- 439
Query: 360 KLDTGVIQAPLDMTAIFSSLYWL 428
K APL ++ SL+W+
Sbjct: 440 KARGDRYLAPLSWLSLSESLHWV 462
[90][TOP]
>UniRef100_Q5G2U4 250 kDa polyprotein n=1 Tax=Strawberry latent ringspot virus
RepID=Q5G2U4_9SECO
Length = 2227
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVY 182
R G +++V+ G+P GFALTV+VNS+ N L+R+++ + F V L V
Sbjct: 1874 RLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS-SSLFFTDCVELAVV 1932
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI-EPKPFWELDFLKRKFL 359
GDDNL+SV A FN + + LA + DGSDK+ + E P + DFLKR F
Sbjct: 1933 GDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEFNPPEKCDFLKRCF- 1991
Query: 360 KLDTGVIQAPLDMTAIFSSLYWL 428
K APL ++ SL+W+
Sbjct: 1992 KARGDRYLAPLSWLSLSESLHWV 2014
[91][TOP]
>UniRef100_UPI0000164A59 RNA-dependent RNA polymerase n=1 Tax=Satsuma dwarf virus
RepID=UPI0000164A59
Length = 682
Score = 78.2 bits (191), Expect = 4e-13
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 9/191 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQT 164
RY +++++ G PSGFA TV++NSV NE +++++ L A + F +
Sbjct: 330 RYLISDGVLYEIHGGTPSGFAPTVMINSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEA 389
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
+ +YGDDN +SVA AS +N I L VK+ DG+ TI+P P E+DF
Sbjct: 390 TEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLEEVDF 447
Query: 342 LKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLN 515
LKR+F+ D+G I PL +I L+++ G D I L LN
Sbjct: 448 LKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAALELN 490
Query: 516 VNVALMELYLH 548
+ AL E + H
Sbjct: 491 IATALCEAFFH 501
[92][TOP]
>UniRef100_Q9WAL8 Polyprotein n=3 Tax=Satsuma dwarf virus RepID=Q9WAL8_SDV
Length = 2081
Score = 78.2 bits (191), Expect = 4e-13
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 9/191 (4%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQT 164
RY +++++ G PSGFA TV++NSV NE +++++ L A + F +
Sbjct: 1729 RYLISDGVLYEIHGGTPSGFAPTVMINSVVNEFYLKWSWIGLLKEAGYANQATLYAFHEA 1788
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFWELDF 341
+ +YGDDN +SVA AS +N I L VK+ DG+ TI+P P E+DF
Sbjct: 1789 TEISLYGDDNFVSVATPVASVYNLTTISNFLGRIGVKLGDGA--KTGTIKPFIPLEEVDF 1846
Query: 342 LKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLN 515
LKR+F+ D+G I PL +I L+++ G D I L LN
Sbjct: 1847 LKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------RGGQDEIAALELN 1889
Query: 516 VNVALMELYLH 548
+ AL E + H
Sbjct: 1890 IATALCEAFFH 1900
[93][TOP]
>UniRef100_Q9IJX4 Nonstructural polyprotein n=1 Tax=Cricket paralysis virus
RepID=Q9IJX4_CRPV
Length = 1771
Score = 77.8 bits (190), Expect = 6e-13
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 8/195 (4%)
Frame = +3
Query: 18 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVY 182
G V+ PSG TV++N ++N +++R + RKLAP+ + + F++ V +I Y
Sbjct: 1559 GDNVYMWTHSQPSGNPFTVIINCLYNSMIMRIVWILLARKLAPEMQSMKKFRENVSMISY 1618
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL- 359
GDDN ++++ WFN I + E K + TD K ++ E+ FLK++F+
Sbjct: 1619 GDDNCLNISDRVVEWFNQITISEQMKEIKHEYTD-EGKTGDMVKFPSLSEIHFLKKRFVF 1677
Query: 360 --KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALM 533
+L V APL I+ L W +D E L++N+N A
Sbjct: 1678 SHQLQRTV--APLQKDVIYEMLNWT----------------RNTIDPNEILMMNINTAFR 1719
Query: 534 ELYLHNDSKEFQRVQ 578
E+ H S E+Q+++
Sbjct: 1720 EIVYHGKS-EYQKLR 1733
[94][TOP]
>UniRef100_A7KCA2 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-B
RepID=A7KCA2_9VIRU
Length = 1614
Score = 73.9 bits (180), Expect = 8e-12
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + +RY Y L P+ F+ V L+ YGDDN++SV+ C WF
Sbjct: 1288 PSGNPLTVILNSIVNSLRMRYVYFMLNPEHTVTTFKDNVNLMTYGDDNIMSVSREC-DWF 1346
Query: 231 NGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLD-TGVIQAPLDMTAI 407
N +I T A + T +DK++ ++ + FLKR + D G APL+ +I
Sbjct: 1347 NHTSISETFATLNIVYT-MADKESASVPFINIKDASFLKRTWRMDDQLGCYVAPLEEESI 1405
Query: 408 FSSLYWLTPSK 440
SL T SK
Sbjct: 1406 EKSLMVWTRSK 1416
[95][TOP]
>UniRef100_Q0EDJ7 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ7_9VIRU
Length = 297
Score = 73.2 bits (178), Expect = 1e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[96][TOP]
>UniRef100_Q0EDJ3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ3_9VIRU
Length = 297
Score = 73.2 bits (178), Expect = 1e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[97][TOP]
>UniRef100_UPI0000163DC1 RNA-dependent RNA polymerase n=1 Tax=Maize chlorotic dwarf virus
RepID=UPI0000163DC1
Length = 612
Score = 72.8 bits (177), Expect = 2e-11
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQT 164
R V + +F+ G+PSGFA+TV+ NS N + A+ L+P+ F
Sbjct: 342 REGIVKEYLFQYCQGMPSGFAMTVIFNSFVNYYYLAMAWMNLISHSPLSPQSTVRDFDNY 401
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWEL--- 335
++VYGDDN++SV + ++N + L++ V TD D P + PF E+
Sbjct: 402 CKVVVYGDDNIVSVDLNFLEYYNLRTVAAYLSQFGVTYTD--DAKNPIEKSVPFVEITSV 459
Query: 336 DFLKRKFLKLD---TGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEEL 506
FLKR+++ L + + +APLD T+I L+W+ + IE L
Sbjct: 460 SFLKRRWVPLGGRLSTIYKAPLDKTSIEERLHWIRECDND----------------IEAL 503
Query: 507 VLNVNVALMELYLH 548
N+ AL E +H
Sbjct: 504 NQNIESALYEASIH 517
[98][TOP]
>UniRef100_O11979 Polyprotein n=2 Tax=Maize chlorotic dwarf virus RepID=O11979_9SECO
Length = 3443
Score = 72.8 bits (177), Expect = 2e-11
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQT 164
R V + +F+ G+PSGFA+TV+ NS N + A+ L+P+ F
Sbjct: 3173 REGIVKEYLFQYCQGMPSGFAMTVIFNSFVNYYYLAMAWMNLISHSPLSPQSTVRDFDNY 3232
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWEL--- 335
++VYGDDN++SV + ++N + L++ V TD D P + PF E+
Sbjct: 3233 CKVVVYGDDNIVSVDLNFLEYYNLRTVAAYLSQFGVTYTD--DAKNPIEKSVPFVEITSV 3290
Query: 336 DFLKRKFLKLD---TGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEEL 506
FLKR+++ L + + +APLD T+I L+W+ + IE L
Sbjct: 3291 SFLKRRWVPLGGRLSTIYKAPLDKTSIEERLHWIRECDND----------------IEAL 3334
Query: 507 VLNVNVALMELYLH 548
N+ AL E +H
Sbjct: 3335 NQNIESALYEASIH 3348
[99][TOP]
>UniRef100_Q8B3M2 Polyprotein n=1 Tax=Deformed wing virus RepID=Q8B3M2_9VIRU
Length = 2893
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 2755
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 2756 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 2815 ANLDKVSVEGTTNW 2828
[100][TOP]
>UniRef100_Q7TG18 Polyprotein n=1 Tax=Deformed wing virus RepID=Q7TG18_9VIRU
Length = 2893
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 2755
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 2756 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 2815 ANLDKVSVEGTTNW 2828
[101][TOP]
>UniRef100_Q6XMI0 Polyprotein (Fragment) n=1 Tax=Deformed wing virus RepID=Q6XMI0_9VIRU
Length = 1566
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 1382 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 1440
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 1441 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 1499
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 1500 ANLDKVSVEGTTNW 1513
[102][TOP]
>UniRef100_Q0EDK8 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK8_9VIRU
Length = 297
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[103][TOP]
>UniRef100_Q0EDI6 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDI6_9VIRU
Length = 297
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[104][TOP]
>UniRef100_A5A4Z3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cowpea mosaic virus
RepID=A5A4Z3_CPMV
Length = 203
Score = 72.4 bits (176), Expect = 2e-11
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 5/71 (7%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A V++V CG+PSGF +TV+VNS+FNEILIRY Y+KL AP+ F + +
Sbjct: 133 RLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPELMVQSFDKLM 192
Query: 168 CLIVYGDDNLI 200
L+ YGDDNL+
Sbjct: 193 GLVTYGDDNLV 203
[105][TOP]
>UniRef100_A0ZSE7 Polyprotein (Fragment) n=13 Tax=Kakugo virus RepID=A0ZSE7_9VIRU
Length = 297
Score = 72.4 bits (176), Expect = 2e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[106][TOP]
>UniRef100_UPI0000163D77 RNA-dependent RNA polymerase n=1 Tax=Rice tungro spherical virus
RepID=UPI0000163D77
Length = 621
Score = 72.0 bits (175), Expect = 3e-11
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTV 167
R G + + + G+PSGFA+TV+ NS N + A+ L C+ T
Sbjct: 353 RDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTY 412
Query: 168 CLIV-YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPF---WEL 335
C IV YGDDN++SV +N + + L+ V TDG DK+ P KP+ ++
Sbjct: 413 CKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKM 470
Query: 336 DFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWL----TPSKDKFHTHQKASQYSGEV--- 488
FLKR F ++++ + +APLD T+I L W+ TP + + +++ + +
Sbjct: 471 SFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTP-VEALEQNIESALHEAAIHGR 529
Query: 489 DVIEELVLNVNVALMELYLHNDSKEFQRVQ 578
D ++LV +N AL + L F+ Q
Sbjct: 530 DYFDDLVRRLNSALTRVMLPPTDISFEECQ 559
[107][TOP]
>UniRef100_Q98645 ORF1 protein (Fragment) n=1 Tax=Rice tungro spherical virus
RepID=Q98645_9SECO
Length = 1619
Score = 72.0 bits (175), Expect = 3e-11
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTV 167
R G + + + G+PSGFA+TV+ NS N + A+ L C+ T
Sbjct: 1350 RDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTY 1409
Query: 168 CLIV-YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPF---WEL 335
C IV YGDDN++SV +N + + L+ V TDG DK+ P KP+ ++
Sbjct: 1410 CKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKM 1467
Query: 336 DFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWL----TPSKDKFHTHQKASQYSGEV--- 488
FLKR F ++++ + +APLD T+I L W+ TP + + +++ + +
Sbjct: 1468 SFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTP-VEALEQNIESALHEAAIHGR 1526
Query: 489 DVIEELVLNVNVALMELYLHNDSKEFQRVQ 578
D ++LV +N AL + L F+ Q
Sbjct: 1527 DYFDDLVQRLNSALKRVMLPPTDISFEECQ 1556
[108][TOP]
>UniRef100_Q0EDK3 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK3_9VIRU
Length = 297
Score = 72.0 bits (175), Expect = 3e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKISVEGTTNW 275
[109][TOP]
>UniRef100_Q0EDI5 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDI5_9VIRU
Length = 297
Score = 72.0 bits (175), Expect = 3e-11
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGVTDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[110][TOP]
>UniRef100_A5A4Z4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Bean pod mottle
virus RepID=A5A4Z4_9SECO
Length = 197
Score = 72.0 bits (175), Expect = 3e-11
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
R A + V++V CG+PSGF LTV+ NS+FNE+LIRY+Y KL AP F+ V
Sbjct: 127 RMAICKKDVWRVECGIPSGFPLTVICNSIFNEMLIRYSYEKLLRQAKAPSMFLQSFKNFV 186
Query: 168 CLIVYGDDNLI 200
L VYGDDNL+
Sbjct: 187 SLCVYGDDNLV 197
[111][TOP]
>UniRef100_Q91PP5 Probable RNA-directed RNA polymerase n=1 Tax=Rice tungro spherical
virus (isolate Vt6) RepID=POLG_RTSVT
Length = 3471
Score = 72.0 bits (175), Expect = 3e-11
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTV 167
R G + + + G+PSGFA+TV+ NS N + A+ L C+ T
Sbjct: 3202 RDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTY 3261
Query: 168 CLIV-YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPF---WEL 335
C IV YGDDN++SV +N + + L+ V TDG DK+ P KP+ ++
Sbjct: 3262 CKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKM 3319
Query: 336 DFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWL----TPSKDKFHTHQKASQYSGEV--- 488
FLKR F ++++ + +APLD T+I L W+ TP + + +++ + +
Sbjct: 3320 SFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTP-VEALEQNIESALHEAAIHGR 3378
Query: 489 DVIEELVLNVNVALMELYLHNDSKEFQRVQ 578
D ++LV +N AL + L F+ Q
Sbjct: 3379 DYFDDLVQRLNSALKRVMLPPTDISFEECQ 3408
[112][TOP]
>UniRef100_Q83034 Probable RNA-directed RNA polymerase n=2 Tax=Rice tungro spherical
virus RepID=POLG_RTSVA
Length = 3473
Score = 72.0 bits (175), Expect = 3e-11
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTV 167
R G + + + G+PSGFA+TV+ NS N + A+ L C+ T
Sbjct: 3205 RDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTY 3264
Query: 168 CLIV-YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPF---WEL 335
C IV YGDDN++SV +N + + L+ V TDG DK+ P KP+ ++
Sbjct: 3265 CKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKM 3322
Query: 336 DFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWL----TPSKDKFHTHQKASQYSGEV--- 488
FLKR F ++++ + +APLD T+I L W+ TP + + +++ + +
Sbjct: 3323 SFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTP-VEALEQNIESALHEAAIHGR 3381
Query: 489 DVIEELVLNVNVALMELYLHNDSKEFQRVQ 578
D ++LV +N AL + L F+ Q
Sbjct: 3382 DYFDDLVRRLNSALTRVMLPPTDISFEECQ 3411
[113][TOP]
>UniRef100_Q1MNG5 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG5_9SECO
Length = 3471
Score = 71.6 bits (174), Expect = 4e-11
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTV 167
R G + + + G+PSGFA+TV+ NS N + A+ L C+ T
Sbjct: 3202 RDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTY 3261
Query: 168 CLIV-YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPF---WEL 335
C IV YGDDN++SV +N + + L+ V TDG DK+ P KP+ ++
Sbjct: 3262 CKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKM 3319
Query: 336 DFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWL----TPSKDKFHTHQKASQYSGEV--- 488
FLKR F ++++ + +APLD T+I L W+ TP + + +++ + +
Sbjct: 3320 SFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTP-VEALEQNIESALHEAAIHGR 3378
Query: 489 DVIEELVLNVNVALMELYLHNDSKEFQRVQ 578
D ++LV +N AL + L F+ Q
Sbjct: 3379 DYFDDLVQRLNSALKRVMLPPTDITFEECQ 3408
[114][TOP]
>UniRef100_Q1MNG4 Polyprotein n=1 Tax=Rice tungro spherical virus RepID=Q1MNG4_9SECO
Length = 3471
Score = 71.6 bits (174), Expect = 4e-11
Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 18/210 (8%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAY-----RKLAPKPEKCRFQQTV 167
R G + + + G+PSGFA+TV+ NS N + A+ L C+ T
Sbjct: 3202 RDGICGDLILRYSQGMPSGFAMTVIFNSFVNYYFMALAWMSTVGSSLLSPQGSCKDFDTY 3261
Query: 168 CLIV-YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPF---WEL 335
C IV YGDDN++SV +N + + L+ V TDG DK+ P KP+ ++
Sbjct: 3262 CKIVAYGDDNVVSVHEEFLDVYNLQTVAAYLSHFGVTYTDG-DKN-PIHMSKPYEDITKM 3319
Query: 336 DFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWL----TPSKDKFHTHQKASQYSGEV--- 488
FLKR F ++++ + +APLD T+I L W+ TP + + +++ + +
Sbjct: 3320 SFLKRGFERVESSGFLWKAPLDKTSIEERLNWIRDCPTP-VEALEQNIESALHEAAIHGR 3378
Query: 489 DVIEELVLNVNVALMELYLHNDSKEFQRVQ 578
D ++LV +N AL + L F+ Q
Sbjct: 3379 DYFDDLVQRLNSALRRVMLPPTDITFEECQ 3408
[115][TOP]
>UniRef100_Q0EDJ0 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ0_9VIRU
Length = 297
Score = 71.6 bits (174), Expect = 4e-11
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T + N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDIXNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[116][TOP]
>UniRef100_Q5MH31 Polyprotein n=1 Tax=Maize chlorotic dwarf virus RepID=Q5MH31_9SECO
Length = 3481
Score = 71.2 bits (173), Expect = 5e-11
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 13/195 (6%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL------APKPEKCRFQQT 164
R V + +F+ G+PSGFA+TV+ NS N + A+ L +P+ F +
Sbjct: 3211 REGIVKEYLFQYCQGMPSGFAMTVIFNSFVNYYYLAMAWMNLISSSPLSPQSTLRDFDEY 3270
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGS----DKDAPTIEPKPFWE 332
++VYGDDN++SV+ ++N + L++ V TD + +K P ++ +
Sbjct: 3271 CKVVVYGDDNIVSVSEEFIPYYNLRMVAAYLSQFGVTYTDDAKNPIEKSVPWVDIR---T 3327
Query: 333 LDFLKRKFLKLD---TGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 503
+ FLKR++ + + + +APL+ T+I L+W+ D IE
Sbjct: 3328 VSFLKRRWTSIGGQLSTIYKAPLETTSIEERLHWIRECDDD----------------IEA 3371
Query: 504 LVLNVNVALMELYLH 548
L N+ AL E +H
Sbjct: 3372 LNQNIESALYEASIH 3386
[117][TOP]
>UniRef100_Q0EDK9 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK9_9VIRU
Length = 297
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGXTDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[118][TOP]
>UniRef100_Q0EDJ8 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ8_9VIRU
Length = 297
Score = 71.2 bits (173), Expect = 5e-11
Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K+ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMGFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[119][TOP]
>UniRef100_B5LPA0 Polyprotein n=1 Tax=Infectious flacherie virus RepID=B5LPA0_9VIRU
Length = 3085
Score = 71.2 bits (173), Expect = 5e-11
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 5/145 (3%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
VFKVN G+ +G +T VVNSV N IL+ Y + K+A + F + +IV GDD +IS+
Sbjct: 2757 VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIA-RRRASEFFKLTYIIVMGDDVVISL 2815
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKP---FWELDFLKRKFLKLDT-- 371
F+ I A+ +K+TD S+K+ T EPKP F + +FL R F D
Sbjct: 2816 PKQLTEEFDCRKICAEFAKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYP 2873
Query: 372 GVIQAPLDMTAIFSSLYWLTPSKDK 446
+ AP+ A+F W++ +D+
Sbjct: 2874 DITFAPVKTIALFDCPLWISKGQDE 2898
[120][TOP]
>UniRef100_B3F388 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F388_9VIRU
Length = 139
Score = 71.2 bits (173), Expect = 5e-11
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + +RYAY L PK E F++ V L+ YGDDN++SV+P+ A W+
Sbjct: 59 PSGHPLTVIINSLVNSLYMRYAYCLLNPKHEVSSFKENVSLMTYGDDNIMSVSPT-APWY 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N AI A + T
Sbjct: 118 NHTAIAAAFATMDITYT 134
[121][TOP]
>UniRef100_A0ZSF0 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=A0ZSF0_9VIRU
Length = 297
Score = 71.2 bits (173), Expect = 5e-11
Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T +
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPLFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[122][TOP]
>UniRef100_UPI0000167D17 RNA-dependent RNA polymerase n=1 Tax=Parsnip yellow fleck virus
RepID=UPI0000167D17
Length = 813
Score = 70.9 bits (172), Expect = 7e-11
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA------PKPEKCRFQQT 164
R++ + + +V G PSGF +TV+ NS N ++ A+ LA C F +
Sbjct: 350 RFSLMKGAILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLARFNGRQDISHPCNFPKY 409
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEPKPF---WE 332
V VYGDDN++++ W+N + + L + V +TDG+ A E KP+ E
Sbjct: 410 VRACVYGDDNIVAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKAS--EAKPYGKILE 467
Query: 333 LDFLKRKFL--KLDTGVIQAPLDMTAIFSSLYWL 428
DFLKR F +L + APL +I +YW+
Sbjct: 468 FDFLKRHFKADELIPSLFHAPLHKRSIEEQVYWI 501
[123][TOP]
>UniRef100_A0ZSF1 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=A0ZSF1_9VIRU
Length = 297
Score = 70.9 bits (172), Expect = 7e-11
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEXTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPXFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[124][TOP]
>UniRef100_Q05057 Probable RNA-directed RNA polymerase n=1 Tax=Parsnip yellow fleck
virus (isolate P-121) RepID=POLG_PYFV1
Length = 3027
Score = 70.9 bits (172), Expect = 7e-11
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 12/154 (7%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA------PKPEKCRFQQT 164
R++ + + +V G PSGF +TV+ NS N ++ A+ LA C F +
Sbjct: 2564 RFSLMKGAILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLARFNGRQDISHPCNFPKY 2623
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEPKPF---WE 332
V VYGDDN++++ W+N + + L + V +TDG+ A E KP+ E
Sbjct: 2624 VRACVYGDDNIVAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKAS--EAKPYGKILE 2681
Query: 333 LDFLKRKFL--KLDTGVIQAPLDMTAIFSSLYWL 428
DFLKR F +L + APL +I +YW+
Sbjct: 2682 FDFLKRHFKADELIPSLFHAPLHKRSIEEQVYWI 2715
[125][TOP]
>UniRef100_Q6QLR4 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Venturia canescens
picorna-like virus RepID=Q6QLR4_9PICO
Length = 514
Score = 70.5 bits (171), Expect = 9e-11
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK-----PEKCRFQQTVCLIVYGDD 191
VF+ CGLPSG TV NS N + IR A+ +LA + + F + V L+ GDD
Sbjct: 328 VFRPTCGLPSGNCETVERNSQTNSLYIRIAFYELAKRYAPVYRDAYWFDKKVRLVTNGDD 387
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITD----GSDKDAPTIEPKPFWELDFLKRKFL 359
+ SV SWFN + E +K+TD G +D +IE E +LKR F+
Sbjct: 388 LIASVKEDVISWFNNRTLIEFFVEYGLKMTDALKSGVVRDYCSIE-----EASYLKRGFV 442
Query: 360 KLDT--GVIQAPLDMTAIFSSLYWLTPSKDK 446
K T G APL+ +I + W+ S DK
Sbjct: 443 KHPTREGEWMAPLEEASITDTANWVWRSVDK 473
[126][TOP]
>UniRef100_C1K2M4 Protease/RNA-dependent RNA polymerase (Fragment) n=1 Tax=Nasonia
vitripennis virus RepID=C1K2M4_9VIRU
Length = 787
Score = 70.1 bits (170), Expect = 1e-10
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAP-KPEKCRFQQTVCLIVYGDD 191
+ + N G+PSG A TV+ NS N I IR AY RK AP + F+Q V + GDD
Sbjct: 578 IVRFNTGMPSGNAGTVITNSECNSIYIRCAYLGLARKYAPVLADLYWFKQYVRMFSNGDD 637
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+++V P SWFN + ++ +K+TD K E E +LKR F K T
Sbjct: 638 LIMAVKPDIISWFNNRTLIDFFSQHNIKMTDAL-KSGKVREFCSLEEATYLKRGFKKHPT 696
Query: 372 --GVIQAPLDMTAIFSSLYWLTPSKDK 446
G APL+ +I + W+ S D+
Sbjct: 697 RPGEWLAPLERASITDTANWIWRSVDR 723
[127][TOP]
>UniRef100_Q7TFA5 Polyprotein n=1 Tax=Varroa destructor virus 1 RepID=Q7TFA5_9VIRU
Length = 2893
Score = 69.7 bits (169), Expect = 2e-10
Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A++ + P F + V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWQGITDLP-LSEFSRHVVLVCYGDDLIMNV 2755
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ FN I + K++ TD DK T+ + FLK FLK T V
Sbjct: 2756 SDEMIDKFNAVTIGDFFSRYKMEFTD-QDKSGNTVRWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 384 APLDMTAIFSSLYW 425
A LD +I + W
Sbjct: 2815 ANLDKVSIEGTTNW 2828
[128][TOP]
>UniRef100_Q76LW4 Polyprotein n=1 Tax=Kakugo virus RepID=Q76LW4_9VIRU
Length = 2893
Score = 69.7 bits (169), Expect = 2e-10
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 2697 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 2755
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ ++ TD DK T++ + FLK FLK T V
Sbjct: 2756 SDNMIDKFNAVTIGKFFSQYEMVFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 2814
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 2815 ANLDKVSVEGTTNW 2828
[129][TOP]
>UniRef100_Q0EDJ6 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ6_9VIRU
Length = 297
Score = 69.7 bits (169), Expect = 2e-10
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD ++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLXMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD D T++ + FLK FLK T V
Sbjct: 203 SDNXIDXFNAVTIGKFFSQYKMEFTD-QDXSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[130][TOP]
>UniRef100_O70710 Polyprotein n=1 Tax=Infectious flacherie virus RepID=O70710_9VIRU
Length = 3085
Score = 69.7 bits (169), Expect = 2e-10
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
VFKVN G+ +G +T VVNSV N IL+ Y + K+ + F + +IV GDD +IS+
Sbjct: 2757 VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIT-RRRASEFFKLTYIIVMGDDVVISL 2815
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKP---FWELDFLKRKFLKLDT-- 371
F+ I A+ +K+TD S+K+ T EPKP F + +FL R F D
Sbjct: 2816 PKQLTEEFDCRKICAEFAKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYP 2873
Query: 372 GVIQAPLDMTAIFSSLYWLTPSKDK 446
+ AP+ A+F W++ +D+
Sbjct: 2874 DITFAPVKTIALFDCPLWISKGQDE 2898
[131][TOP]
>UniRef100_B6UIR8 Polyprotein n=1 Tax=Carrot necrotic dieback virus RepID=B6UIR8_9SECO
Length = 3015
Score = 69.7 bits (169), Expect = 2e-10
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK------CRFQQT 164
R++ V V +++ G PSGF +TV+ NS N ++ A+ LA + + F
Sbjct: 2555 RFSLVKGGVLRISGGGPSGFPMTVIFNSFINLFYLQSAWIMLASQNGRSDISCPSNFPSF 2614
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEP-KPFWELD 338
V VYGDDN++++ W+N + + L + V +TDG+ A +P + D
Sbjct: 2615 VRACVYGDDNIVAIKNEVLPWYNLQTVSKILKDYFGVTMTDGAKNCAENAQPYGKILDFD 2674
Query: 339 FLKRKFL--KLDTGVIQAPLDMTAIFSSLYWLTPSKD 443
FLKR F +L + APL +I +YW+ D
Sbjct: 2675 FLKRNFRPDELIPSLFHAPLHKRSIEEQVYWIREGGD 2711
[132][TOP]
>UniRef100_A3RKR2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Infectious
flacherie virus RepID=A3RKR2_9VIRU
Length = 639
Score = 69.7 bits (169), Expect = 2e-10
Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 5/145 (3%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
VFKVN G+ +G +T VVNSV N IL+ Y + K+ + F + +IV GDD +IS+
Sbjct: 311 VFKVNNGVLAGHPMTSVVNSVVNLILMNYMWIKIT-RRRASEFFKLTYIIVMGDDVVISL 369
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKP---FWELDFLKRKFLKLDT-- 371
F+ I A+ +K+TD S+K+ T EPKP F + +FL R F D
Sbjct: 370 PKQLTEEFDCRKICAEFAKYDIKVTD-SEKNL-TGEPKPYDSFDKFEFLSRGFSDCDAYP 427
Query: 372 GVIQAPLDMTAIFSSLYWLTPSKDK 446
+ AP+ A+F W++ +D+
Sbjct: 428 DITFAPVKTIALFDCPLWISKGQDE 452
[133][TOP]
>UniRef100_Q1LZW4 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q1LZW4_9VIRU
Length = 2107
Score = 69.3 bits (168), Expect = 2e-10
Identities = 49/138 (35%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Frame = +3
Query: 24 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 191
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+L SV+ + WFN AI +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHAITRLMAATGHEYTDETKSGSPP-PYRSLNEVTFLKREFVLRDH 2008
Query: 372 GVIQAPLDMTAIFSSLYW 425
I APL I W
Sbjct: 2009 FWI-APLSRNTIEDMCMW 2025
[134][TOP]
>UniRef100_Q0EDK4 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK4_9VIRU
Length = 297
Score = 69.3 bits (168), Expect = 2e-10
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEXTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A L ++ + W
Sbjct: 262 ANLXKVSVEGTTNW 275
[135][TOP]
>UniRef100_Q09X76 Nonstructural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q09X76_9VIRU
Length = 2107
Score = 69.3 bits (168), Expect = 2e-10
Identities = 55/182 (30%), Positives = 78/182 (42%), Gaps = 4/182 (2%)
Frame = +3
Query: 24 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 191
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVARIFYGDD 1949
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLSEVTFLKREFVLRDQ 2008
Query: 372 GVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 551
I APL I W + +D + L+ +A E LH
Sbjct: 2009 FWI-APLSQNTIEDMCMWSRKN----------------IDAQDALLQTTRIASFEASLHE 2051
Query: 552 DS 557
S
Sbjct: 2052 KS 2053
[136][TOP]
>UniRef100_Q7LZW0 Polyprotein n=1 Tax=Parsnip yellow fleck virus RepID=Q7LZW0_9SECO
Length = 637
Score = 68.9 bits (167), Expect = 3e-10
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLA------PKPEKCRFQQTVCLIVYGD 188
+ +V G PSGF +TV+ NS N ++ A+ LA C F + V VYGD
Sbjct: 491 ILRVPGGGPSGFPMTVIFNSFINLFYLQSAWIMLARFNGRQDISHPCNFPKYVRACVYGD 550
Query: 189 DNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEPKPF---WELDFLKRKF 356
DN++++ W+N + + L + V +TDG+ A E KP+ E DFLKR F
Sbjct: 551 DNIVAIKMEVLPWYNLQTVSEALFDYFGVTMTDGAKNKAS--EAKPYGKILEFDFLKRHF 608
Query: 357 L--KLDTGVIQAPLDMTAIFSSLYWL 428
+L + APL +I +YW+
Sbjct: 609 KADELIPSLFHAPLHKRSIEEQVYWI 634
[137][TOP]
>UniRef100_Q0EDJ5 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDJ5_9VIRU
Length = 297
Score = 68.9 bits (167), Expect = 3e-10
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD ++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLXMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD D T++ + FLK FLK T V
Sbjct: 203 SDNXIDKFNAVTIGKFFSQYKMEFTD-QDXSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[138][TOP]
>UniRef100_A6NA62 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato torrado
virus RepID=A6NA62_9SECO
Length = 216
Score = 68.9 bits (167), Expect = 3e-10
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 10/127 (7%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQ 161
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K
Sbjct: 90 YTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFN 149
Query: 162 TVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWEL 335
+ + VYGDDNL++V P W+ AI L V I +G DK D + + EL
Sbjct: 150 KLFVAVYGDDNLVAV-PMELQWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSEL 208
Query: 336 DFLKRKF 356
FL R F
Sbjct: 209 TFLSRGF 215
[139][TOP]
>UniRef100_A1X599 Polyprotein (Fragment) n=1 Tax=Deformed wing virus
RepID=A1X599_9VIRU
Length = 205
Score = 68.9 bits (167), Expect = 3e-10
Identities = 40/115 (34%), Positives = 64/115 (55%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P F Q V L+ YGDD +++V
Sbjct: 90 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEFSQNVVLVCYGDDLIMNV 148
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+ + FN I ++ K++ TD DK T++ + FLK FLK T
Sbjct: 149 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPT 202
[140][TOP]
>UniRef100_Q91NQ2 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q91NQ2_9VIRU
Length = 2107
Score = 68.2 bits (165), Expect = 4e-10
Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Frame = +3
Query: 24 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 191
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLSEVTFLKREFVLRDH 2008
Query: 372 GVIQAPLDMTAIFSSLYW 425
I APL I W
Sbjct: 2009 FWI-APLSRNTIEDMCMW 2025
[141][TOP]
>UniRef100_O36966 Replicase polyprotein n=1 Tax=Drosophila C virus RepID=O36966_9VIRU
Length = 1759
Score = 68.2 bits (165), Expect = 4e-10
Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 8/184 (4%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCR-FQQTVCLIVYGDDNLISVAPS 215
PSG TV++N ++N I++R ++ K P+ + + F + V LI YGDDN++++
Sbjct: 1558 PSGNPFTVIINCLYNSIIMRLSWIRVMEKFQPRLKSMKWFNEYVALITYGDDNVLNIDAK 1617
Query: 216 CASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL---KLDTGVIQA 386
WFN I + E + + TD + K ++ + ++ FLKRKF +L V A
Sbjct: 1618 VVEWFNQINISEVMTEMRHEYTDEA-KTGDIVKSRKLEDIFFLKRKFRFSPELQRHV--A 1674
Query: 387 PLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEF 566
PL + I+ L W S +D E L+ N+ A E+ H +E+
Sbjct: 1675 PLKIEVIYEMLNWSRRS----------------IDPDEILMSNIETAFREVVYHG-KEEY 1717
Query: 567 QRVQ 578
+++
Sbjct: 1718 DKLR 1721
[142][TOP]
>UniRef100_Q5DM98 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q5DM98_9VIRU
Length = 2107
Score = 67.8 bits (164), Expect = 6e-10
Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Frame = +3
Query: 24 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 191
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLNEVTFLKREFVLRDH 2008
Query: 372 GVIQAPLDMTAIFSSLYW 425
I APL I W
Sbjct: 2009 FWI-APLSRNTIEDMCMW 2025
[143][TOP]
>UniRef100_Q4JFT3 Non-structural polyprotein n=1 Tax=Taura syndrome virus
RepID=Q4JFT3_9VIRU
Length = 2107
Score = 67.8 bits (164), Expect = 6e-10
Identities = 48/138 (34%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Frame = +3
Query: 24 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDD 191
KVF++N PSG LT ++N V+N I+ RY Y R+ F V I YGDD
Sbjct: 1890 KVFQLNHSQPSGNPLTTLINCVYNMIIFRYVYLLAQRENGFPMTLSGFTTNVACIFYGDD 1949
Query: 192 NLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT 371
+L SV+ + WFN I +A + TD + +P + E+ FLKR+F+ D
Sbjct: 1950 SLCSVSDKVSEWFNQHVITRLMAATGHEYTDETKSGSPP-PYRSLNEVTFLKREFVLRDH 2008
Query: 372 GVIQAPLDMTAIFSSLYW 425
I APL I W
Sbjct: 2009 FWI-APLSRNTIEDMCMW 2025
[144][TOP]
>UniRef100_B3F389 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F389_9VIRU
Length = 139
Score = 67.8 bits (164), Expect = 6e-10
Identities = 34/77 (44%), Positives = 46/77 (59%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + IRY YR L PK E F+Q V L+ YGDDN++ ++ SWF
Sbjct: 59 PSGHPLTVIINSLVNSLYIRYCYRMLNPKKEVITFKQNVNLMTYGDDNIMGISDK-ISWF 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N +I L + T
Sbjct: 118 NHTSIADCLGMANIVYT 134
[145][TOP]
>UniRef100_Q0EDJ2 Polyprotein (Fragment) n=2 Tax=Kakugo virus RepID=Q0EDJ2_9VIRU
Length = 297
Score = 67.4 bits (163), Expect = 8e-10
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V +V CG+PSG T ++N++ N +LIR A+ + P F Q V L+ YGDD ++V
Sbjct: 144 VXRVPCGIPSGSPXTDILNTISNCLLIRLAWLGITDXP-LSEFSQNVVLVCYGDDLXMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD D T++ + FLK FLK T V
Sbjct: 203 SDNMIDXFNAVTIGKFFSQYKMEFTD-QDXSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A LD ++ + W
Sbjct: 262 ANLDKVSVEGTTNW 275
[146][TOP]
>UniRef100_UPI0001765C94 RNA-dependent RNA polymerase n=1 Tax=Tomato marchitez virus
RepID=UPI0001765C94
Length = 249
Score = 67.0 bits (162), Expect = 1e-09
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 11/126 (8%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKP---------EKCRFQ 158
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P + F
Sbjct: 126 YTLCEDKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAARAIGVKPSDFN 185
Query: 159 QTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWE 332
Q + + VYGDDNL++V P W++ I L V I +G DK D ++ + E
Sbjct: 186 Q-LFIAVYGDDNLVAV-PLHLQWYSLPNIAHELELVNVIIKNGLDKSMDVNEVQFQDLSE 243
Query: 333 LDFLKR 350
L FL R
Sbjct: 244 LTFLSR 249
[147][TOP]
>UniRef100_Q6WGS3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS3_9PICO
Length = 151
Score = 67.0 bits (162), Expect = 1e-09
Identities = 36/95 (37%), Positives = 57/95 (60%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
+ + N PSG LTV++NS+ N + +RYAY L+P+ + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYVLSPQKDLLTFKHHVALFTYGDDNICGV 109
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI 311
+ CA +F I+ LAE ++ T +DK+A ++
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEAESV 142
[148][TOP]
>UniRef100_A7KCA0 Putative uncharacterized protein n=1 Tax=Marine RNA virus JP-A
RepID=A7KCA0_9VIRU
Length = 1689
Score = 67.0 bits (162), Expect = 1e-09
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Frame = +3
Query: 36 VNCGL-PSGFALTVVVNSVFNEILIRYAYRKLAPKPE--KCRFQQTVCLIVYGDDNLISV 206
++CG PSG LTV +N + N +L+R AY + P E F+ ++ YGDD SV
Sbjct: 1486 IHCGSNPSGQNLTVYINCIVNSLLLRCAYYHMYPAAEGNPEPFRHNCAVMTYGDDVKGSV 1545
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL-KLDTGVIQ 383
C W+N LAE+ + T + PT + DFLKR L +TG+I
Sbjct: 1546 RQEC-DWYNHITYAQFLAERDMVFTMPDKESTPTPYMNDL-DADFLKRHNLYNPETGLIH 1603
Query: 384 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSG 482
LD +IF SL+ + SK Q A G
Sbjct: 1604 GVLDQNSIFKSLHSVLKSKAISAEDQSAQNIDG 1636
[149][TOP]
>UniRef100_Q6WGR8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGR8_9PICO
Length = 151
Score = 66.6 bits (161), Expect = 1e-09
Identities = 36/95 (37%), Positives = 56/95 (58%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
+ + N PSG LTV++NS+ N + +RYAY L P+ + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYALNPQKDLLTFKHRVALFTYGDDNICGV 109
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI 311
+ CA +F I+ LAE ++ T +DK+A ++
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEAESV 142
[150][TOP]
>UniRef100_Q0EDK2 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK2_9VIRU
Length = 297
Score = 66.6 bits (161), Expect = 1e-09
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEXSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A L ++ + W
Sbjct: 262 ANLXKISVEGTTNW 275
[151][TOP]
>UniRef100_Q0EDK1 Polyprotein (Fragment) n=1 Tax=Kakugo virus RepID=Q0EDK1_9VIRU
Length = 297
Score = 66.6 bits (161), Expect = 1e-09
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
V++V CG+PSG +T ++N++ N +LIR A+ + P Q V L+ YGDD +++V
Sbjct: 144 VYRVPCGIPSGSPITDILNTISNCLLIRLAWLGITDLP-LSEXSQNVVLVCYGDDLIMNV 202
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDT-GVIQ 383
+ + FN I ++ K++ TD DK T++ + FLK FLK T V
Sbjct: 203 SDNMIDKFNAVTIGKFFSQYKMEFTD-QDKSGNTVKWRTLQTATFLKHGFLKHPTRPVFL 261
Query: 384 APLDMTAIFSSLYW 425
A L ++ + W
Sbjct: 262 ANLXKXSVEGTTNW 275
[152][TOP]
>UniRef100_B3F394 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F394_9VIRU
Length = 138
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/71 (42%), Positives = 47/71 (66%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++N + N + +RY Y KL+P+ F++ V ++ YGDDN++ V+ S A WF
Sbjct: 58 PSGHPLTVIINGLANSLYLRYCYAKLSPEANCVNFKRDVAVMTYGDDNIMGVSDS-APWF 116
Query: 231 NGEAIRVTLAE 263
N ++ TLA+
Sbjct: 117 NHTTLQSTLAD 127
[153][TOP]
>UniRef100_A5A104 Polyprotein n=1 Tax=Brevicoryne brassicae picorna-like virus
RepID=A5A104_9VIRU
Length = 2983
Score = 66.6 bits (161), Expect = 1e-09
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAY---RKLAPKPEKCRFQQTVCLIVYGDDNL 197
+++V CGLPSG TV+ NS+ N I IR A+ + + F+ + LI YGDD +
Sbjct: 2776 LYEVQCGLPSGNPATVIFNSIVNSIYIRCAWLDVMRNSSYKSLLDFRNNIKLITYGDDLI 2835
Query: 198 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWE-LDFLKRKFL--KLD 368
S+ S + FN ++ + +K TD + K +EP + E FLK F +
Sbjct: 2836 ASIDNSVSDKFNNNSLSHFFLKHNIKFTDAA-KTGVNVEPYIYLETATFLKHAFKPHPIR 2894
Query: 369 TGVIQAPLDMTAIFSSLYWLTPSKD-KFHTHQKASQ-----YSGEVDVIEELVLNVNVAL 530
GV A L+ +I W+ S D K T+ Q Y D V ++ A
Sbjct: 2895 QGVYLAQLEELSITECANWIRKSPDPKTATYDNCVQGTMLAYGHGPDYYNRYVKKISEAW 2954
Query: 531 MELY 542
E Y
Sbjct: 2955 FEKY 2958
[154][TOP]
>UniRef100_Q6EEL1 Polyprotein n=1 Tax=Maize chlorotic dwarf virus RepID=Q6EEL1_9SECO
Length = 3457
Score = 66.2 bits (160), Expect = 2e-09
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK------LAPKPEKCRFQQT 164
R V + +F+ G+PSGFA+TV+ NS N + A+ L+P+ F +
Sbjct: 3187 RRGIVKEYLFQYCQGMPSGFAMTVIFNSFMNYYYLSLAWMNLISASPLSPQASLRYFDEY 3246
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELD-- 338
+IVYGDDN+++V ++N + L++ V TD D P + + + +++
Sbjct: 3247 CKVIVYGDDNIVAVNEEFLEYYNLRLVAGYLSQFGVSYTD--DAKNPIEKSERYVKIEDV 3304
Query: 339 -FLKRKFLKLD---TGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEEL 506
FLKR+++ L + + +APLD +I L W+ D GE+ L
Sbjct: 3305 TFLKRRWVSLGGRASMLYKAPLDKVSIEERLNWIRECDD------------GEL----AL 3348
Query: 507 VLNVNVALMELYLH 548
V N+ AL E +H
Sbjct: 3349 VQNIESALYEASIH 3362
[155][TOP]
>UniRef100_Q6WGS5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=unidentified
picorna-like virus RepID=Q6WGS5_9PICO
Length = 151
Score = 65.9 bits (159), Expect = 2e-09
Identities = 36/95 (37%), Positives = 56/95 (58%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
+ + N PSG LTV++NS+ N + +RYAY L P+ + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYVLNPQKDLLTFKHHVALFTYGDDNICGV 109
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI 311
+ CA +F I+ LAE ++ T +DK+A ++
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEAESV 142
[156][TOP]
>UniRef100_B1PM64 Polyprotein (Fragment) n=1 Tax=Tomato torrado virus
RepID=B1PM64_9SECO
Length = 910
Score = 65.9 bits (159), Expect = 2e-09
Identities = 59/196 (30%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
Frame = +3
Query: 6 YAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE--------KCRFQQ 161
Y KVF++ G+PSGFALTV+ NS+ NE +RYA+ L +P K
Sbjct: 181 YTICENKVFRLVGGMPSGFALTVIFNSLLNEFYMRYAFISLLRRPHIAAQAIGCKPSDFN 240
Query: 162 TVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIEPKPFWEL 335
+ + VYGDDNL++V P W+ AI L V I +G DK D + + E
Sbjct: 241 KLFVAVYGDDNLVAV-PMELHWYTLPAIAQELEVVNVIIKNGIDKNMDVSSSKMLDLSEP 299
Query: 336 DFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEV 488
FL YW+ PS + T + + + G
Sbjct: 300 TFLXXXXXXXXXXXXXXXXXXXXXXXXXYWIRPSVGCPDALAMLENIDTGVREAFHHGP- 358
Query: 489 DVIEELVLNVNVALME 536
V E+LV +V AL E
Sbjct: 359 QVFEKLVADVQNALKE 374
[157][TOP]
>UniRef100_Q6A1M4 Polyprotein (Fragment) n=1 Tax=Squash mosaic virus
RepID=Q6A1M4_9SECO
Length = 243
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL-----APKPEKCRFQQTV 167
RYA +V++V CG+PSGF LTV+ NS+FNEIL+RY YRK+ P+P F + V
Sbjct: 180 RYAISKNEVWRVECGIPSGFPLTVICNSIFNEILVRYCYRKILEKNNVPRPLHVNFPRMV 239
Query: 168 CLI 176
L+
Sbjct: 240 KLV 242
[158][TOP]
>UniRef100_B3F387 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F387_9VIRU
Length = 139
Score = 65.5 bits (158), Expect = 3e-09
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + +RY Y L PK F++ V L+ YGDDN++ V+P A WF
Sbjct: 59 PSGHPLTVIINSIVNSLYMRYCYVMLNPKFTVATFKKHVRLMTYGDDNIMGVSPD-ARWF 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N AI L++ + T
Sbjct: 118 NHTAIAKVLSDIDITYT 134
[159][TOP]
>UniRef100_Q6A1M5 Polyprotein (Fragment) n=1 Tax=Tobacco ringspot virus
RepID=Q6A1M5_TRSV
Length = 254
Score = 64.7 bits (156), Expect = 5e-09
Identities = 32/59 (54%), Positives = 41/59 (69%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 179
R +VF+V G+PSG ALTV++NSVFNEILIRY Y+ + P PE RF+ V L+V
Sbjct: 196 RKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIRYVYKTVIPSPEFNRFETFVTLVV 254
[160][TOP]
>UniRef100_B3F390 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F390_9VIRU
Length = 139
Score = 64.7 bits (156), Expect = 5e-09
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + +RY YR L P E F++ V L+ YGDDN+++V+ SWF
Sbjct: 59 PSGHPLTVIINSLANALYMRYCYRILNPAHECSTFKKNVNLMTYGDDNIMNVSKH-TSWF 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N +I TL E + T
Sbjct: 118 NHTSIANTLKEIGITYT 134
[161][TOP]
>UniRef100_Q6WGT7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGT7_9PICO
Length = 148
Score = 64.3 bits (155), Expect = 6e-09
Identities = 39/96 (40%), Positives = 55/96 (57%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV+VNS+ N + +RY Y L P E F++ V L+ YGDDN++ S WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENVSLLTYGDDNVMG---SKQDWF 114
Query: 231 NGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELD 338
N AI LA V+ T +DK++ ++ PF +D
Sbjct: 115 NHTAIVAELANIGVEYT-MADKESKSV---PFIHID 146
[162][TOP]
>UniRef100_Q6WGS2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS2_9PICO
Length = 148
Score = 64.3 bits (155), Expect = 6e-09
Identities = 39/96 (40%), Positives = 55/96 (57%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV+VNS+ N + +RY Y L P E F++ V L+ YGDDN++ S WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENVSLLTYGDDNVMG---SKQDWF 114
Query: 231 NGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELD 338
N AI LA V+ T +DK++ ++ PF +D
Sbjct: 115 NHTAIVAELANIGVEYT-MADKESKSV---PFIHID 146
[163][TOP]
>UniRef100_B3F397 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F397_9VIRU
Length = 152
Score = 64.3 bits (155), Expect = 6e-09
Identities = 36/96 (37%), Positives = 57/96 (59%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + +RYAY L P+ E F++ V L+ YGDDN+++V+ + W+
Sbjct: 59 PSGHPLTVIINSLVNSLYMRYAYIILNPEQESASFRKNVALLTYGDDNILTVSRN-IDWY 117
Query: 231 NGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELD 338
N I A+ + T DK+A ++ PF L+
Sbjct: 118 NHTTITQAFADIGLVYT-MPDKEAESV---PFLSLN 149
[164][TOP]
>UniRef100_B3F391 RNA-dependent RNA polymerase (Fragment) n=2 Tax=uncultured marine
RNA virus RepID=B3F391_9VIRU
Length = 139
Score = 64.3 bits (155), Expect = 6e-09
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + +RY YR L P E F++ V L+ YGDDN+++V+ SWF
Sbjct: 59 PSGHPLTVIINSLANALYMRYCYRILNPVHECSTFKKNVNLMTYGDDNIMNVSKH-TSWF 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N +I TL E + T
Sbjct: 118 NHTSIANTLKEIGITYT 134
[165][TOP]
>UniRef100_Q6WGS9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS9_9PICO
Length = 148
Score = 63.5 bits (153), Expect = 1e-08
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV+VNS+ N + +RY Y L P E F++ V L+ YGDDN++ WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENVSLLTYGDDNVMGFK---QDWF 114
Query: 231 NGEAIRVTLAEKKVKIT--DGSDKDAPTI 311
N AI LA V+ T D K P+I
Sbjct: 115 NHTAIVAELANIGVEYTMADKESKSVPSI 143
[166][TOP]
>UniRef100_Q6A2S5 Polyprotein (Fragment) n=1 Tax=Potato black ringspot virus
RepID=Q6A2S5_9SECO
Length = 252
Score = 63.5 bits (153), Expect = 1e-08
Identities = 32/59 (54%), Positives = 40/59 (67%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 179
R +VF+V G+PSG ALTV++NSVFNEILIRY Y+ + P PE RF+ V L V
Sbjct: 194 RKCLARSQVFEVRGGIPSGCALTVLLNSVFNEILIRYVYKTVVPSPEFNRFETFVTLAV 252
[167][TOP]
>UniRef100_Q6WGR9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGR9_9PICO
Length = 151
Score = 62.0 bits (149), Expect = 3e-08
Identities = 35/95 (36%), Positives = 55/95 (57%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISV 206
+ + N PSG LTV++NS+ N + +RYAY L + + F+ V L YGDDN+ V
Sbjct: 50 IVQFNGSNPSGHPLTVIINSLANSLYMRYAYYVLNLQKDLLTFKHHVALFTYGDDNICGV 109
Query: 207 APSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI 311
+ CA +F I+ LAE ++ T +DK+A ++
Sbjct: 110 SIECA-FFTHTGIQAALAECGIRYT-MADKEAESV 142
[168][TOP]
>UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic
sadwavirus RepID=A4UVR7_SDV
Length = 319
Score = 62.0 bits (149), Expect = 3e-08
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +3
Query: 147 CRFQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KP 323
C F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 21 CAFHEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIP 78
Query: 324 FWELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVI 497
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 79 LEEVDFLKRQFI-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDEL 121
Query: 498 EELVLNVNVALMELYLH 548
L LNV AL E + H
Sbjct: 122 AALELNVATALCEAFFH 138
[169][TOP]
>UniRef100_B3F386 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F386_9VIRU
Length = 139
Score = 61.6 bits (148), Expect = 4e-08
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N I +RY Y L P E F+ V L+ YGDDN+++V+ C W+
Sbjct: 59 PSGNPLTVILNSIVNCIRMRYVYLVLNPDKEVETFKNNVSLMTYGDDNIMTVSEEC-DWY 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N AI E V T
Sbjct: 118 NHTAISQAFKESGVVYT 134
[170][TOP]
>UniRef100_Q6WGS1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=unidentified
picorna-like virus RepID=Q6WGS1_9PICO
Length = 148
Score = 61.2 bits (147), Expect = 5e-08
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV+VNS+ N + +RY Y L P E F++ L+ YGDDN++ WF
Sbjct: 58 PSGHPLTVIVNSLVNALYMRYCYILLNPAKEATSFKENESLLTYGDDNVMGFK---QDWF 114
Query: 231 NGEAIRVTLAEKKVKIT--DGSDKDAPTI 311
N AI LA V+ T D K P+I
Sbjct: 115 NHTAIVAELANIGVEYTMADKESKSVPSI 143
[171][TOP]
>UniRef100_Q6A2S6 Polyprotein (Fragment) n=1 Tax=Cherry leaf roll virus
RepID=Q6A2S6_9SECO
Length = 240
Score = 61.2 bits (147), Expect = 5e-08
Identities = 30/59 (50%), Positives = 41/59 (69%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 179
RY+ G +V++V GLPSG A+TV+++S+FNEILIRYAYR + RF V L+V
Sbjct: 182 RYSLCGSQVYEVRAGLPSGCAITVIMDSIFNEILIRYAYRVSVGPILRNRFNHFVKLVV 240
[172][TOP]
>UniRef100_B3F385 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F385_9VIRU
Length = 139
Score = 60.5 bits (145), Expect = 9e-08
Identities = 33/77 (42%), Positives = 44/77 (57%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++N + N + RY Y L P E F+ V L+ YGDDN++ V+P A WF
Sbjct: 59 PSGHPLTVIINGLANSLYNRYCYFILNPNSEVHSFKNNVNLMTYGDDNIMGVSPE-APWF 117
Query: 231 NGEAIRVTLAEKKVKIT 281
N AI L++ V T
Sbjct: 118 NHTAIADALSKIGVTYT 134
[173][TOP]
>UniRef100_Q672I1 Capsid protein n=1 Tax=Sapovirus Hu/Dresden/pJG-Sap01/DE
RepID=POLG_SVSAP
Length = 2280
Score = 60.5 bits (145), Expect = 9e-08
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 1492 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETVHTY 1551
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 1552 GDDCMYSVCPATASIFHAVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 1605
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 1606 TPHGV-RALLDITSITRQFYWLKANR 1630
[174][TOP]
>UniRef100_Q9IPD8 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Sapovirus
Ebt3/1996/JPN RepID=Q9IPD8_9CALI
Length = 261
Score = 60.1 bits (144), Expect = 1e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 65 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETIHTY 124
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 125 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 178
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 179 TPHGV-RALLDITSITRQFYWLKANR 203
[175][TOP]
>UniRef100_Q6XDK5 Polyprotein n=1 Tax=Sapovirus Mc114 RepID=Q6XDK5_9CALI
Length = 2280
Score = 60.1 bits (144), Expect = 1e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 1492 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETIHTY 1551
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 1552 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 1605
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 1606 TPHGV-RALLDITSITRQFYWLKANR 1630
[176][TOP]
>UniRef100_Q0PWW7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Dandelion yellow
mosaic virus RepID=Q0PWW7_9VIRU
Length = 262
Score = 60.1 bits (144), Expect = 1e-07
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 10/145 (6%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR------FQQT 164
R + V V + G PSGF +TV+ NS N + A+ LA + F++
Sbjct: 118 RLSLVKGAVLSIGGGGPSGFPMTVIFNSYINLFYLMSAWSHLATDNGRVDIQHPSFFKKY 177
Query: 165 VCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIEP-KPFWELD 338
V VYGDDN++S+ SW+N ++ L + V +TDG +A +P E D
Sbjct: 178 VRACVYGDDNIVSIKEEVISWYNLCSVSDFLKKAFGVTMTDGEKNEAHLAKPYGKILEFD 237
Query: 339 FLKRKFL--KLDTGVIQAPLDMTAI 407
FLKR F + APL+ +I
Sbjct: 238 FLKRGFFPDSQIPSLFHAPLNKVSI 262
[177][TOP]
>UniRef100_Q69014 Capsid protein (Fragment) n=1 Tax=Sapporo virus-Manchester
RepID=POLG_SVM93
Length = 2208
Score = 60.1 bits (144), Expect = 1e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 1420 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETIHTY 1479
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 1480 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 1533
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
G I+A LD+T+I YWL ++
Sbjct: 1534 TPHG-IRALLDITSITRQFYWLKANR 1558
[178][TOP]
>UniRef100_Q91EJ7 Polyprotein (Fragment) n=1 Tax=Sapovirus Hu/Lyon/30388/98/F
RepID=Q91EJ7_9CALI
Length = 827
Score = 59.7 bits (143), Expect = 2e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 39 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETVHTY 98
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 99 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 152
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 153 TPHGV-RALLDITSITRQFYWLKANR 177
[179][TOP]
>UniRef100_O93123 Polyprotein (Fragment) n=1 Tax=Sapporo virus-Houston/86
RepID=O93123_9CALI
Length = 853
Score = 59.7 bits (143), Expect = 2e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 65 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETVHTY 124
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 125 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 178
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 179 TPHGV-RALLDITSITRQFYWLKANR 203
[180][TOP]
>UniRef100_O12155 Polymerase and capsid polyprotein (Fragment) n=1 Tax=Sapporo
virus-Sapporo RepID=O12155_9CALI
Length = 861
Score = 59.7 bits (143), Expect = 2e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 72 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETVHTY 131
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D SD PT P FLKR F +
Sbjct: 132 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSDAIKPTNTPV------FLKRTFTQ 185
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 186 TPHGV-RALLDITSITRQFYWLKANR 210
[181][TOP]
>UniRef100_C4PBJ5 Truncated polyprotein (Fragment) n=1 Tax=Sapovirus Hu/697/2005/BGD
RepID=C4PBJ5_9CALI
Length = 344
Score = 59.7 bits (143), Expect = 2e-07
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I I A + P Q + Y
Sbjct: 20 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYIAAAILQAYESHNVPYTGNVFQVETIHTY 79
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D S+ PT P FLKR F +
Sbjct: 80 GDDCMYSVCPATASIFHAVLANLTSYGLKPTAADKSEAIKPTNTPV------FLKRTFTQ 133
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 134 TPHGV-RALLDITSITRQFYWLKANR 158
[182][TOP]
>UniRef100_Q2WFL9 Polyprotein (Fragment) n=2 Tax=Sapovirus GI RepID=Q2WFL9_9CALI
Length = 358
Score = 59.3 bits (142), Expect = 2e-07
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T V+NS+ + I I A + P Q + Y
Sbjct: 36 YVNDIKFVTRGGLPSGMPFTSVINSINHMIYIAAAILQAYESHNVPYTGNVFQVETIHTY 95
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D S+ PT P FLKR F +
Sbjct: 96 GDDCMYSVCPATASIFHAVLANLTSYGLKPTAADKSEAIKPTNTPV------FLKRTFTQ 149
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 150 TPHGV-RALLDITSITRQFYWLKANR 174
[183][TOP]
>UniRef100_Q2HWK3 Polyprotein n=1 Tax=Rhizosolenia setigera RNA virus
RepID=Q2HWK3_9VIRU
Length = 1605
Score = 59.3 bits (142), Expect = 2e-07
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 10/142 (7%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPS----- 215
PSG LTV NS+ N + R A+RK+ P R++ V L+ YGDD +SV+P
Sbjct: 1396 PSGQNLTVYTNSIVNSLYHRCAFRKIYPN-FSGRYRDAVALMTYGDDVKMSVSPKFPDYN 1454
Query: 216 ---CASWFNGEAIRVTLAEKK-VKITDGSDKDAPTIEPKPFWELDF-LKRKFLKLDTGVI 380
S FN + I T+AEK+ + +DA ++ K WE + ++ G+
Sbjct: 1455 HTRIQSEFNKQGIEYTMAEKEAASVPFIQHEDADFLKRKSRWEPSYSYTEGDGTINKGMW 1514
Query: 381 QAPLDMTAIFSSLYWLTPSKDK 446
A LD +IF SL+ SK K
Sbjct: 1515 LAMLDEESIFKSLHANLASKVK 1536
[184][TOP]
>UniRef100_B3F393 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F393_9VIRU
Length = 139
Score = 58.9 bits (141), Expect = 3e-07
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++NS+ N + IRY+Y P E F+ V LI YGDDN + ++ + WF
Sbjct: 59 PSGHPLTVIINSLVNSLYIRYSYYLTNPNQEIDTFKDNVALITYGDDNAMGISNN-VPWF 117
Query: 231 NGEAIRVTLA 260
N +I+ L+
Sbjct: 118 NHTSIQQALS 127
[185][TOP]
>UniRef100_Q6A1Z2 Polyprotein (Fragment) n=1 Tax=Arabis mosaic virus
RepID=Q6A1Z2_ARMV
Length = 236
Score = 58.5 bits (140), Expect = 4e-07
Identities = 25/58 (43%), Positives = 40/58 (68%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLI 176
R + G +V++ G+PSG ALTVV+NS+FNE+L+RY ++K+ P + F + V L+
Sbjct: 178 RLSICGNQVYETEAGIPSGCALTVVINSIFNELLMRYCFKKIVPPVYRECFDRCVVLV 235
[186][TOP]
>UniRef100_Q27J85 Polyprotein (Fragment) n=1 Tax=Sapovirus Hu/Maizuru/6728/JP
RepID=Q27J85_9CALI
Length = 366
Score = 58.2 bits (139), Expect = 5e-07
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 3/146 (2%)
Frame = +3
Query: 12 FVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVY 182
+V F GLPSG T VVNS+ + I + A + P Q + Y
Sbjct: 31 YVNDIKFVTRGGLPSGMPFTSVVNSINHMIYVAAAILQAYESHNVPYTGNVFQVETVHTY 90
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLK 362
GDD + SV P+ AS F+ +T K D S+ PT P FLKR F +
Sbjct: 91 GDDCMYSVCPATASIFHTVLANLTSYGLKPTAADKSEAIKPTNTPV------FLKRTFTQ 144
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSK 440
GV +A LD+T+I YWL ++
Sbjct: 145 TPHGV-RALLDITSITRQFYWLKANR 169
[187][TOP]
>UniRef100_Q1L028 Nonstructural protein n=1 Tax=Homalodisca coagulata virus-1
RepID=Q1L028_9VIRU
Length = 1795
Score = 58.2 bits (139), Expect = 5e-07
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Frame = +3
Query: 48 LPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQ---TVCLIVYGDDNLISVAPSC 218
LPSG LT +VNS++ ++ RY K + + Q + L+ YGDD+++S+
Sbjct: 1589 LPSGHFLTAIVNSLYVNLIFRYLLAKSSKLTSHIQIDQLCRRMKLVSYGDDHIVSIPSGY 1648
Query: 219 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLD 395
FN + +E + TD + D E + ++ FLKR F + + APL
Sbjct: 1649 EKIFNQSTLPTLFSEIGMTYTDETKSDREVPETRRIEDVTFLKRGFRWEKELNRYVAPLS 1708
Query: 396 MTAIFSSLYWLTPS 437
+ + + +W + S
Sbjct: 1709 LDTVLETPFWRSKS 1722
[188][TOP]
>UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic
sadwavirus RepID=A4UVR5_SDV
Length = 319
Score = 58.2 bits (139), Expect = 5e-07
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Frame = +3
Query: 153 FQQTVCLIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEP-KPFW 329
F + + +YGDDN +SVA + AS +N E I L+ VK+ DG+ + TI+P P
Sbjct: 23 FYEATEISLYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA--KSGTIKPFIPLE 80
Query: 330 ELDFLKRKFLKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEE 503
E+DFLKR+F+ D+G I PL +I L+++ G D +
Sbjct: 81 EVDFLKRQFV-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAA 123
Query: 504 LVLNVNVALMELYLH 548
L LNV AL E + H
Sbjct: 124 LELNVATALCEAFFH 138
[189][TOP]
>UniRef100_Q27YG9 RNA-directed RNA polymerase n=1 Tax=Nora virus RepID=POLR_NORAV
Length = 2104
Score = 55.8 bits (133), Expect(2) = 5e-07
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 3/145 (2%)
Frame = +3
Query: 21 QKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLI 200
Q V+K N G SG T + N + N+I YA+ K ++Q V + +GDD +
Sbjct: 1896 QTVYKTNRGNKSGSYTTTIDNCLANDIYGLYAWVKTTGLRSLWDYRQNVSSVAFGDDIIK 1955
Query: 201 SVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFW---ELDFLKRKFLKLDT 371
SV+ +N R L +T GS KD E KPF L FLKR F KL+
Sbjct: 1956 SVSDEYKDKYNYCTYRDVLNATGHIMTPGS-KDG---EEKPFTSFENLQFLKRGF-KLEN 2010
Query: 372 GVIQAPLDMTAIFSSLYWLTPSKDK 446
G++ APL +I W +D+
Sbjct: 2011 GMVLAPLLQRSIEGPFVWTDIREDQ 2035
Score = 21.9 bits (45), Expect(2) = 5e-07
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +2
Query: 479 WGG*CYRRACSQCECGIDGTI 541
WG Y C + +CG + T+
Sbjct: 2053 WGEEYYNELCQKLKCGTNRTL 2073
[190][TOP]
>UniRef100_Q9DSN9 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q9DSN9_9VIRU
Length = 1906
Score = 57.8 bits (138), Expect = 6e-07
Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 17/196 (8%)
Frame = +3
Query: 18 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPE-----KCR----FQQTVC 170
G V+ + PSG T +N N + +R + + K KC F + V
Sbjct: 1693 GDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKCYVMKDFSKHVS 1752
Query: 171 LIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAP---TIEPKPFWE 332
++ YGDDN+I+ + + WFN E I + TD G + + P TIE +
Sbjct: 1753 IVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGKNGEVPKWRTIE-----D 1807
Query: 333 LDFLKRKFLKLDT--GVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEEL 506
+ +LKRKF + D+ V +APL M I W G +D+ E
Sbjct: 1808 VQYLKRKF-RYDSKRKVWEAPLCMDTILEMPNWC----------------RGSLDIQEGT 1850
Query: 507 VLNVNVALMELYLHND 554
+N A+MEL +H +
Sbjct: 1851 KVNCENAIMELSMHEE 1866
[191][TOP]
>UniRef100_A7LM73 Polyprotein n=1 Tax=Honey bee slow paralysis virus RepID=A7LM73_9VIRU
Length = 2964
Score = 57.8 bits (138), Expect = 6e-07
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Frame = +3
Query: 45 GLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDDNLISVAP 212
G+ SG +T +NS + I+ A+ R+L K F + ++VYGDD ++SV+
Sbjct: 2771 GIASGSPITAELNSEVGKKYIKLAFLGICRQLNYKYSLNDFNKHCRVVVYGDDLILSVSD 2830
Query: 213 SCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL--KLDTGVIQA 386
+ SWFN ++I L +++TD + KD ++ +P + FLKR F +G+ A
Sbjct: 2831 AFVSWFNLQSISEYLDNYGIRLTDVT-KDGTIVKYRPLADSSFLKRSFKPHPSRSGIYLA 2889
Query: 387 PLDMTAIFSSLYWLTPSKDK 446
P++ + W D+
Sbjct: 2890 PIEPRSYQECTNWCHKQNDE 2909
[192][TOP]
>UniRef100_Q8BDE0 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q8BDE0_9VIRU
Length = 1904
Score = 57.4 bits (137), Expect = 8e-07
Identities = 52/196 (26%), Positives = 82/196 (41%), Gaps = 17/196 (8%)
Frame = +3
Query: 18 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR---------FQQTVC 170
G V+ + PSG T +N N + +R + + K F + V
Sbjct: 1691 GDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKRYVMKDFSKHVS 1750
Query: 171 LIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAP---TIEPKPFWE 332
++ YGDDN+I+ + + WFN E I + TD G++ + P TIE +
Sbjct: 1751 IVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGNNGEVPKWRTIE-----D 1805
Query: 333 LDFLKRKFLKLDT--GVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEEL 506
+ +LKRKF + D+ V +APL M I W G +D+ E
Sbjct: 1806 VQYLKRKF-RYDSKRKVWEAPLSMDTILEMPNWC----------------RGGLDIQEGT 1848
Query: 507 VLNVNVALMELYLHND 554
+N A+MEL +H +
Sbjct: 1849 KVNCENAIMELSMHEE 1864
[193][TOP]
>UniRef100_Q5Y975 Nonstructural polyprotein n=1 Tax=Solenopsis invicta virus 1
RepID=Q5Y975_9VIRU
Length = 1396
Score = 57.4 bits (137), Expect = 8e-07
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 17/183 (9%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAY---------------RKLAPKPEKCRFQQTVCLIVYG 185
PSG T +N + N I +R + +K K F+ V LI YG
Sbjct: 1188 PSGNPATTPLNCLINSIGLRLCFLRCFEEHKAFFMELMKKFGCKTRMELFRLLVSLISYG 1247
Query: 186 DDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTI-EPKPFWELDFLKRKFL- 359
DDN+I++ P + FN I AE TD + + + + K E+ FLKR F+
Sbjct: 1248 DDNVINIHPLISHLFNMNTITKYFAEFGFTYTDETKQVGKGVPDYKTLEEVSFLKRGFIF 1307
Query: 360 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 539
+ APLD+ I + W+ ++D +E +N A+MEL
Sbjct: 1308 NEERNCYDAPLDINTILEMINWVRK----------------DLDQVESTKINCENAIMEL 1351
Query: 540 YLH 548
+H
Sbjct: 1352 AMH 1354
[194][TOP]
>UniRef100_Q8BDE1 Replicase polyprotein n=1 Tax=Acute bee paralysis virus
RepID=Q8BDE1_9VIRU
Length = 1904
Score = 57.0 bits (136), Expect = 1e-06
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 16/195 (8%)
Frame = +3
Query: 18 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR---------FQQTVC 170
G V+ + PSG T +N N + +R + + K F + V
Sbjct: 1691 GDSVYMMTHSQPSGNPATTPLNCFINSMGLRMVFELCSKKYSALNGTKRYVMKDFSKHVS 1750
Query: 171 LIVYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAP---TIEPKPFWE 332
++ YGDDN+I+ + + WFN E I + TD G++ + P TIE +
Sbjct: 1751 IVSYGDDNVINFSDEVSEWFNMETITEAFEKLGFTYTDELKGNNGEVPKWRTIE-----D 1805
Query: 333 LDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELV 509
+ +LKRKF V +APL M I W G +DV E
Sbjct: 1806 VQYLKRKFRYDFKRKVWEAPLCMDTILEMPNWC----------------RGGLDVQEGTK 1849
Query: 510 LNVNVALMELYLHND 554
+N A+MEL +H +
Sbjct: 1850 VNCENAIMELSMHEE 1864
[195][TOP]
>UniRef100_B3F398 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F398_9VIRU
Length = 137
Score = 57.0 bits (136), Expect = 1e-06
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG +LT N + N IL RYA+ + +P+ + RF++ V L+VYGDDN V+ S WF
Sbjct: 58 PSGISLTTWTNCIINSILQRYAFFR-SPRSARFRFRECVSLMVYGDDNAAGVS-SEVKWF 115
Query: 231 NGEAIRVTLAEKKVKIT 281
N I +L + ++ T
Sbjct: 116 NHTTIATSLQQCGIEYT 132
[196][TOP]
>UniRef100_B1A455 Replication-associated polyprotein (Fragment) n=1 Tax=Black raspberry
necrosis virus RepID=B1A455_9SECO
Length = 983
Score = 56.6 bits (135), Expect = 1e-06
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRK----LAPKPEKCRFQQTVC 170
R V +++ V G PSGFALTV++NS+ N+ + +A+RK ++P R ++ C
Sbjct: 868 RRILVLSELYHVRGGTPSGFALTVIINSMVNQFYLMWAWRKIMARISPSMVTYRIMRSHC 927
Query: 171 LI-VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDG 287
VYGDDN++S + + +N I L V ++DG
Sbjct: 928 TFSVYGDDNVVSFSLAVRDMYNLCTIADELKTIGVTLSDG 967
[197][TOP]
>UniRef100_B3F392 RNA-dependent RNA polymerase (Fragment) n=1 Tax=uncultured marine
RNA virus RepID=B3F392_9VIRU
Length = 139
Score = 55.8 bits (133), Expect = 2e-06
Identities = 30/71 (42%), Positives = 41/71 (57%)
Frame = +3
Query: 51 PSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIVYGDDNLISVAPSCASWF 230
PSG LTV++N + N + +RYAY L F+ V L+ YGDDN+++V SWF
Sbjct: 59 PSGHPLTVIINGLVNSLYMRYAYTVLNEYGHCNDFKSNVNLMTYGDDNILNVNKD-ISWF 117
Query: 231 NGEAIRVTLAE 263
N +I LAE
Sbjct: 118 NHTSISQALAE 128
[198][TOP]
>UniRef100_B3TZF0 Polymerase polyprotein n=1 Tax=Israel acute paralysis virus of bees
RepID=B3TZF0_9VIRU
Length = 1950
Score = 55.5 bits (132), Expect = 3e-06
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 8/185 (4%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAY----RKLAPKPEKCRFQQTVCLIVYGDDN 194
V+ + PSG T +N N + +R + ++ A K F + V ++ YGDDN
Sbjct: 1745 VYMMTHSQPSGNPATTPLNCFINSMGLRMCFAICAKEAAVKMTMKDFGKHVSMVSYGDDN 1804
Query: 195 LISVAPSCASWFNGEAIRVTLAEKKVKITD---GSDKDAPTIEPKPFWELDFLKRKF-LK 362
+I+ + W+N E I TD G++ + P + + ++ +LKRKF
Sbjct: 1805 VINFSDEVCEWYNMETIAKAFETLGFTYTDELKGANGEVP--KWRSIKDVQYLKRKFRYD 1862
Query: 363 LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELY 542
V +APL M I W G +D+ E LN A+MEL
Sbjct: 1863 EQRKVWEAPLCMDTILEMPNWC----------------RGGLDIQEGTKLNCENAIMELS 1906
Query: 543 LHNDS 557
+H +S
Sbjct: 1907 MHEES 1911
[199][TOP]
>UniRef100_B2BHW5 Non-structural polyprotein n=1 Tax=Black queen cell virus
RepID=B2BHW5_9VIRU
Length = 1628
Score = 55.5 bits (132), Expect = 3e-06
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 14/182 (7%)
Frame = +3
Query: 48 LPSGFALTVVVNSVFNEILIRYAYRKLAPK---PEKCRFQQTVCLIVYGDDNLISVAPSC 218
LPSG LT ++NSVF +++ + + PK F + ++ YGDD+++SV
Sbjct: 1430 LPSGHYLTAIINSVFVNLVMCLVFMEANPKYSFTTASSFFRECGIVAYGDDHVVSVPEKY 1489
Query: 219 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRK-----FLKLDTGVIQ 383
S FN + + V +++ + TIE K E+DFL RK +LK + +
Sbjct: 1490 LSVFNQQTLPVLMSKFGMFY---------TIETKDDTEIDFLSRKLEDVSYLKRNFVYDE 1540
Query: 384 ------APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYL 545
APL + I W S+ DV+ + N+ AL EL L
Sbjct: 1541 PRQRYIAPLSLDVILEMPMWTKSSR----------------DVVTNVFCNLEHALKELSL 1584
Query: 546 HN 551
H+
Sbjct: 1585 HD 1586
[200][TOP]
>UniRef100_Q6A2S7 Polyprotein (Fragment) n=1 Tax=Arracacha virus B RepID=Q6A2S7_9SECO
Length = 251
Score = 55.1 bits (131), Expect = 4e-06
Identities = 25/51 (49%), Positives = 33/51 (64%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRF 155
RY G V+KV+ G+PSGF LTV+VNS+ N + +AYRKL + K F
Sbjct: 191 RYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHF 241
[201][TOP]
>UniRef100_Q1XEP0 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEP0_9SECO
Length = 239
Score = 55.1 bits (131), Expect = 4e-06
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 179
R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+V
Sbjct: 181 RKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLV 239
[202][TOP]
>UniRef100_Q1XEN9 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEN9_9SECO
Length = 239
Score = 55.1 bits (131), Expect = 4e-06
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 179
R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+V
Sbjct: 181 RKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLV 239
[203][TOP]
>UniRef100_Q1XEN8 Polyprotein (Fragment) n=1 Tax=Artichoke yellow ringspot virus
RepID=Q1XEN8_9SECO
Length = 239
Score = 55.1 bits (131), Expect = 4e-06
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 3 RYAFVGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCRFQQTVCLIV 179
R + G ++V G+PSG ALTV++NS+FNEIL+R Y+ + P + F + V L+V
Sbjct: 181 RKSLCGADAYEVRAGIPSGCALTVLLNSIFNEILVRMVYKTVVPGVPRNHFSEYVTLLV 239
[204][TOP]
>UniRef100_O36184 Nonstructural polyprotein n=1 Tax=Plautia stali intestine virus
RepID=O36184_9VIRU
Length = 1811
Score = 54.7 bits (130), Expect = 5e-06
Identities = 51/183 (27%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Frame = +3
Query: 24 KVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR-----FQQTVCLIVYGD 188
K++ + LPSG LT ++NS+F I + YA+ + K + F ++ YGD
Sbjct: 1602 KLYYWSKSLPSGHFLTSIINSIFVNIAMCYAFVESQEKGNRSEENIRVFFNDFSIVTYGD 1661
Query: 189 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF---L 359
D++I V FN + L + T I+ + E+ F+KR F
Sbjct: 1662 DHVIGVPEKYVEDFNQLTLPKLLKTLGLDYTMEDKDRICDIKSRKLEEVTFIKRSFRYVK 1721
Query: 360 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 539
+LD + APLD+ +I + W Q SGE + + NV+ AL EL
Sbjct: 1722 ELDRWL--APLDLNSILDCMNW---------------QRSGEDEGLNAQA-NVSFALKEL 1763
Query: 540 YLH 548
LH
Sbjct: 1764 SLH 1766
[205][TOP]
>UniRef100_Q8B594 Nonstructural polyprotein n=1 Tax=Aphid lethal paralysis virus
RepID=Q8B594_ALPV
Length = 2035
Score = 54.3 bits (129), Expect = 7e-06
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Frame = +3
Query: 27 VFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKL---APKPEKCRFQQTVCLIVYGDDNL 197
++ V G+PSG T ++NS+ N + ++ + P F + I YGDD +
Sbjct: 1821 IYYVRNGIPSGCPATAILNSIVNHCCLADSWLDIMDGTPYATMNSFFEHTSSIFYGDDFI 1880
Query: 198 ISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTG 374
+++ P +N E + L + K ++ + E+ FLKRKF + G
Sbjct: 1881 MNIRPEVIDVYNQETLTPVLKKNLEMTMTDEAKTGECVKARTLEEVSFLKRKFRFESFVG 1940
Query: 375 VIQAPLDMTAIFSSLYWL 428
+ AP+D+ I + W+
Sbjct: 1941 LWVAPIDIDVILDAPNWV 1958
[206][TOP]
>UniRef100_O56050 Nonstructural polyprotein n=1 Tax=Rhopalosiphum padi virus
RepID=O56050_9VIRU
Length = 1998
Score = 54.3 bits (129), Expect = 7e-06
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Frame = +3
Query: 18 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK---CRFQQTVCLIVYGD 188
G ++ V G+PSG +T +NS+ N++ + Y + + P K F + + YGD
Sbjct: 1779 GSLMYYVRNGIPSGCPVTAPLNSIVNQMALVYCWYHIIDDPLKRNVKEFFEHTSSVFYGD 1838
Query: 189 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLD 368
D ++++ FN I +++ + K ++ + E++FLKR F +
Sbjct: 1839 DFVMNIRADVLEQFNQITITRAMSDYLDMVMTDEAKTGECVKWRTLPEVNFLKRAF-HYN 1897
Query: 369 TGVIQ--APLDMTAIFSSLYW 425
T + + APLD+T I S W
Sbjct: 1898 TFIQEYTAPLDLTVILDSTNW 1918
[207][TOP]
>UniRef100_A9QXE1 Nonstructural polyprotein n=1 Tax=Rhopalosiphum padi virus
RepID=A9QXE1_9VIRU
Length = 1998
Score = 54.3 bits (129), Expect = 7e-06
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Frame = +3
Query: 18 GQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEK---CRFQQTVCLIVYGD 188
G ++ V G+PSG +T +NS+ N++ + Y + + P K F + + YGD
Sbjct: 1779 GSLMYYVRNGIPSGCPVTAPLNSIVNQMALIYCWYHIIDDPLKRNVKEFFEHTSSVFYGD 1838
Query: 189 DNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLD 368
D ++++ FN I +++ + K ++ + E++FLKR F +
Sbjct: 1839 DFVMNIRADVLEQFNQITITRAMSDYLDMVMTDEAKTGECVKWRTLPEVNFLKRAF-HYN 1897
Query: 369 TGVIQ--APLDMTAIFSSLYW 425
T + + APLD+T I S W
Sbjct: 1898 TFIQEYTAPLDLTVILDSTNW 1918
[208][TOP]
>UniRef100_Q9WCE9 Polyprotein n=1 Tax=Sacbrood virus RepID=Q9WCE9_9VIRU
Length = 2858
Score = 53.9 bits (128), Expect = 9e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 2651 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCY 2710
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 299
GDD ++SV FN I LA+ + TD + D
Sbjct: 2711 GDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 2749
[209][TOP]
>UniRef100_Q994U1 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994U1_9VIRU
Length = 174
Score = 53.9 bits (128), Expect = 9e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 24 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCY 83
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 299
GDD ++SV FN I LA+ + TD + D
Sbjct: 84 GDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[210][TOP]
>UniRef100_Q994T9 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994T9_9VIRU
Length = 174
Score = 53.9 bits (128), Expect = 9e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 24 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGNKERGQTWESFKQNVELFCY 83
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 299
GDD ++SV FN I LA+ + TD + D
Sbjct: 84 GDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[211][TOP]
>UniRef100_Q994T5 Polyprotein (Fragment) n=3 Tax=Sacbrood virus RepID=Q994T5_9VIRU
Length = 174
Score = 53.9 bits (128), Expect = 9e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 24 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCY 83
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 299
GDD ++SV FN I LA+ + TD + D
Sbjct: 84 GDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 122
[212][TOP]
>UniRef100_Q994T0 Polyprotein (Fragment) n=1 Tax=Sacbrood virus RepID=Q994T0_9VIRU
Length = 174
Score = 53.9 bits (128), Expect = 9e-06
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 24 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSRERGQTWESFKQNVELFCY 83
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFL- 359
GDD ++SV FN I LA+ + TD ++K + FLK F
Sbjct: 84 GDDLIMSVTDKYKDTFNALTISQFLAQYGIVATD-ANKGEEVVAYTTLLNSTFLKHGFRP 142
Query: 360 -KLDTGVIQAPLDMTAIFSSLYWLTPSKD 443
++ + Q+ L ++I + W+ D
Sbjct: 143 HEVYPHLWQSALAWSSINDTTQWIWECAD 171
[213][TOP]
>UniRef100_Q80MT3 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Sacbrood virus
RepID=Q80MT3_9VIRU
Length = 186
Score = 53.9 bits (128), Expect = 9e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 31 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCY 90
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 299
GDD ++SV FN I LA+ + TD + D
Sbjct: 91 GDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 129
[214][TOP]
>UniRef100_Q80MT2 RNA-dependent RNA polymerase (Fragment) n=5 Tax=Sacbrood virus
RepID=Q80MT2_9VIRU
Length = 186
Score = 53.9 bits (128), Expect = 9e-06
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 15 VGQKVFKVNCGLPSGFALTVVVNSVFNEILIRYAYRKLAPKPEKCR----FQQTVCLIVY 182
V +++ CG PSG +TVV+N++ N + I A+ L E+ + F+Q V L Y
Sbjct: 28 VSNTLYQQKCGSPSGAPITVVINTLVNILYIFVAWETLVGSKERGQTWESFKQNVELFCY 87
Query: 183 GDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKD 299
GDD ++SV FN I LA+ + TD + D
Sbjct: 88 GDDLIMSVTDKYKDVFNALTISQFLAQYGIVATDANKGD 126