BB909653 ( RCE08503 )

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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=UPI0000163E03
          Length = 824

 Score =  312 bits (800), Expect = 1e-83
 Identities = 144/192 (75%), Positives = 162/192 (84%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD +AIFSSLYWLTP K KFH  Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF 
Sbjct: 455  LDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFS 514

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVR F++  LPL   QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQ
Sbjct: 515  RVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQ 574

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            GNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ 
Sbjct: 575  GNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLD 634

Query: 541  FGKSSSLKNVKG 576
            FG+ S LKN  G
Sbjct: 635  FGRPSQLKNKLG 646

[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
            RepID=POL1_BRSV
          Length = 2264

 Score =  312 bits (800), Expect = 1e-83
 Identities = 144/192 (75%), Positives = 162/192 (84%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD +AIFSSLYWLTP K KFH  Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF 
Sbjct: 1895 LDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFS 1954

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVR F++  LPL   QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQ
Sbjct: 1955 RVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQ 2014

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            GNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ 
Sbjct: 2015 GNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLD 2074

Query: 541  FGKSSSLKNVKG 576
            FG+ S LKN  G
Sbjct: 2075 FGRPSQLKNKLG 2086

[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
          Length = 824

 Score =  300 bits (767), Expect = 7e-80
 Identities = 142/192 (73%), Positives = 159/192 (82%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD +AIFSSLYWLTP K KFH  QK S + GEVDVIEEL+LNVNVALMELYLHND  EFQ
Sbjct: 455  LDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQ 514

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVR F+  RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQ
Sbjct: 515  RVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQ 574

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            GNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV  
Sbjct: 575  GNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGD 634

Query: 541  FGKSSSLKNVKG 576
            FGK S LKN KG
Sbjct: 635  FGKPSQLKNSKG 646

[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
            RepID=POL1_TBRVM
          Length = 2266

 Score =  300 bits (767), Expect = 7e-80
 Identities = 142/192 (73%), Positives = 159/192 (82%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD +AIFSSLYWLTP K KFH  QK S + GEVDVIEEL+LNVNVALMELYLHND  EFQ
Sbjct: 1897 LDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQ 1956

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVR F+  RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQ
Sbjct: 1957 RVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQ 2016

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            GNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV  
Sbjct: 2017 GNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGD 2076

Query: 541  FGKSSSLKNVKG 576
            FGK S LKN KG
Sbjct: 2077 FGKPSQLKNSKG 2088

[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=UPI00017F0C90
          Length = 826

 Score =  278 bits (710), Expect = 3e-73
 Identities = 128/192 (66%), Positives = 156/192 (81%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD +AIFS L+WLTP K KF   +KA  Y GEVDV+EEL++NVNV+L+ELYLHND +EF 
Sbjct: 454  LDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFN 513

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM  S +
Sbjct: 514  RVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGE 573

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G  G H+PIK GGGVG LPT  WV +
Sbjct: 574  GDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKN 632

Query: 541  FGKSSSLKNVKG 576
            FG+ S LKN  G
Sbjct: 633  FGRPSQLKNNDG 644

[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
            RepID=POL1_GCMV
          Length = 2252

 Score =  278 bits (710), Expect = 3e-73
 Identities = 128/192 (66%), Positives = 156/192 (81%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD +AIFS L+WLTP K KF   +KA  Y GEVDV+EEL++NVNV+L+ELYLHND +EF 
Sbjct: 1880 LDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFN 1939

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM  S +
Sbjct: 1940 RVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGE 1999

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G  G H+PIK GGGVG LPT  WV +
Sbjct: 2000 GDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKN 2058

Query: 541  FGKSSSLKNVKG 576
            FG+ S LKN  G
Sbjct: 2059 FGRPSQLKNNDG 2070

[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=UPI00003FE52F
          Length = 846

 Score =  167 bits (422), Expect = 7e-40
 Identities = 88/192 (45%), Positives = 116/192 (60%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+TAIFS L+W+TP   K        Q    VD + EL LNV VAL ELYLH + +EFQ
Sbjct: 463  LDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQ 521

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVR+F+  ++ +L   + TWA  E+FH S+QTGM  + PA  +D   G +F +FMH S+ 
Sbjct: 522  RVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDI 581

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            GN+ HF    L V GP YKP  +  +VST PLK G  G  VP++ G G+G LPT  WV  
Sbjct: 582  GNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHR 641

Query: 541  FGKSSSLKNVKG 576
            F + + L +  G
Sbjct: 642  FMRPTQLVDAYG 653

[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
            RepID=POL1_CNSV
          Length = 2336

 Score =  167 bits (422), Expect = 7e-40
 Identities = 88/192 (45%), Positives = 116/192 (60%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+TAIFS L+W+TP   K        Q    VD + EL LNV VAL ELYLH + +EFQ
Sbjct: 1953 LDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQ 2011

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            RVR+F+  ++ +L   + TWA  E+FH S+QTGM  + PA  +D   G +F +FMH S+ 
Sbjct: 2012 RVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDI 2071

Query: 361  GNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMS 540
            GN+ HF    L V GP YKP  +  +VST PLK G  G  VP++ G G+G LPT  WV  
Sbjct: 2072 GNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHR 2131

Query: 541  FGKSSSLKNVKG 576
            F + + L +  G
Sbjct: 2132 FMRPTQLVDAYG 2143

[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
            RepID=A2ID54_9SECO
          Length = 1916

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD TAI+SSL+W+                    DV+  L  N   AL+E++ H D  EF 
Sbjct: 1651 LDKTAIYSSLHWVAGRGQ---------------DVMSALKDNARSALIEMWAHQDKAEFV 1695

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             +RSF+++++P   D   TW     FH +QQ G + + P + ++ +  +   K M ++  
Sbjct: 1696 ELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANH 1753

Query: 361  GNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPT 522
            G + H  +    + V GP +  + C++ F+VST PL       G H+P++ G G+GR+P+
Sbjct: 1754 GEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPS 1813

Query: 523  KNWVMSF 543
            ++WV  F
Sbjct: 1814 QDWVRRF 1820

[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
          Length = 2285

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%)
 Frame = +1

Query: 100  DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFLARLPL-LVDQFRTWAFCESFHSSQQT 276
            D++++LV NVN AL+EL+LH D + F  VR+F+L +LP     +  TW   ++FH  Q +
Sbjct: 1925 DMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLS 1984

Query: 277  GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
            G     P  +++   GV F  F+       + H     L + G  Y   +E+ ++S   L
Sbjct: 1985 GESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSL 2044

Query: 457  KMGILGEH-VPIKYGGGVGRLPTKNWVMS 540
              G +  H + +K G G+GRLP+K  V++
Sbjct: 2045 LPGDVNAHKLELKCGDGIGRLPSKASVLA 2073

[11][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
           RepID=UPI00003FE537
          Length = 825

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
 Frame = +1

Query: 100 DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFLARLPL-LVDQFRTWAFCESFHSSQQT 276
           D++++LV NVN AL+ELYLH D +  + VR F+L +LP     +  TW   + FH  Q +
Sbjct: 464 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 523

Query: 277 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
           G     P  +++   G  F  F+  +    + H     L + G  Y   EE+ ++S   L
Sbjct: 524 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 583

Query: 457 KMG-ILGEHVPIKYGGGVGRLPTKNWVMS 540
             G I    + +K G G+GRLP+K  V+S
Sbjct: 584 LPGDINAVKLTLKCGDGIGRLPSKASVLS 612

[12][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
            RepID=POL1_ARMVN
          Length = 2284

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
 Frame = +1

Query: 100  DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFLARLPL-LVDQFRTWAFCESFHSSQQT 276
            D++++LV NVN AL+ELYLH D +  + VR F+L +LP     +  TW   + FH  Q +
Sbjct: 1923 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 1982

Query: 277  GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
            G     P  +++   G  F  F+  +    + H     L + G  Y   EE+ ++S   L
Sbjct: 1983 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 2042

Query: 457  KMG-ILGEHVPIKYGGGVGRLPTKNWVMS 540
              G I    + +K G G+GRLP+K  V+S
Sbjct: 2043 LPGDINAVKLTLKCGDGIGRLPSKASVLS 2071

[13][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA9_9SECO
          Length = 985

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 2/185 (1%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+ AIFSSLY++ P                + + +  L LN  VAL ELYLHND ++F 
Sbjct: 730  LDLQAIFSSLYYINP----------------QGNTLNSLFLNAQVALRELYLHNDIEQFT 773

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             VR+F++ ++         W  C +FH  Q +      P   L+    V   KF+     
Sbjct: 774  AVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAP 831

Query: 361  GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                      L V GP ++  + D   +VS   LK    G + P+ YG GVG+  T+  +
Sbjct: 832  STALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEASI 891

Query: 535  MSFGK 549
             ++ K
Sbjct: 892  FAYRK 896

[14][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
            RepID=POL1_GFLV
          Length = 2284

 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
 Frame = +1

Query: 100  DVIEELVLNVNVALMELYLHNDSKEFQRVRSFFLARLPL-LVDQFRTWAFCESFHSSQQT 276
            D++++L+ NVN AL+ELYLH D   F+ VR+F+  +LP     +  TW   ESFH  Q++
Sbjct: 1924 DMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKS 1983

Query: 277  GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 456
            G   + P  +++   G  F  F   +    + H     L + G  Y   E + ++S   +
Sbjct: 1984 GESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSV 2043

Query: 457  KMGILGE-HVPIKYGGGVGRLPTKNWVMSFGK 549
              G      + +  G G+GRLP+K  +++  K
Sbjct: 2044 LPGDRNVFKLDLPCGDGIGRLPSKCSILNLRK 2075

[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
           RepID=UPI00003FE53F
          Length = 711

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1   LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
           LD+ AI+SSLY++ P                + ++++ L LN  VAL ELYLH D ++F 
Sbjct: 456 LDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFT 499

Query: 181 RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            VR+F++ ++         W  C SFH  Q +      P   L+    V   KF+     
Sbjct: 500 AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 557

Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                     L V GP ++  + D   +VS   LK    G + P+ YG G G+  T+  +
Sbjct: 558 ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 617

Query: 535 MSF 543
            ++
Sbjct: 618 RAY 620

[16][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA8_9SECO
          Length = 985

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+ AI+SSLY++ P                + +++  L LN  VAL ELYLH D ++F 
Sbjct: 730  LDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFT 773

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             VR+F++ ++         W  C SFH  Q +      P   L+    V   KF+     
Sbjct: 774  AVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 831

Query: 361  GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                      L V GP ++  + D   +VS   LK    G + P+ YG G G+  T+  +
Sbjct: 832  ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 891

Query: 535  MSF 543
             ++
Sbjct: 892  RAY 894

[17][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA7_9SECO
          Length = 985

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+ AI+SSLY++ P                + ++++ L LN  VAL ELYLH D ++F 
Sbjct: 730  LDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFT 773

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             VR+F++ ++         W  C SFH  Q +      P   L+    V   KF+     
Sbjct: 774  AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 831

Query: 361  GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                      L V GP ++  + D   +VS   LK    G + P+ YG G G+  T+  +
Sbjct: 832  ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 891

Query: 535  MSF 543
             ++
Sbjct: 892  RAY 894

[18][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
            RASPBERRY) RepID=POL1_TORVR
          Length = 2197

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+ AI+SSLY++ P                + ++++ L LN  VAL ELYLH D ++F 
Sbjct: 1942 LDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFT 1985

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             VR+F++ ++         W  C SFH  Q +      P   L+    V   KF+     
Sbjct: 1986 AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 2043

Query: 361  GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                      L V GP ++  + D   +VS   LK    G + P+ YG G G+  T+  +
Sbjct: 2044 ATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 2103

Query: 535  MSF 543
             ++
Sbjct: 2104 RAY 2106

[19][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
           virus RepID=Q155U1_9SECO
          Length = 711

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1   LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
           LD+ AI+SSLY++ P                + +++  L LN  VAL ELYLH D ++F 
Sbjct: 456 LDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFT 499

Query: 181 RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            VR+F++ ++         W  C SFH  Q +      P   L+    V   KF+     
Sbjct: 500 AVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAP 557

Query: 361 GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                     L V GP ++  + D   +VS   LK    G + P+ YG G G+  T+  +
Sbjct: 558 ATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 617

Query: 535 MSF 543
            ++
Sbjct: 618 RAY 620

[20][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
            RepID=Q9QRA6_9SECO
          Length = 985

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+ AI+SSLY++ P                + +++  L LN  VAL ELYLH D ++F 
Sbjct: 730  LDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFT 773

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             VR+F++ ++         W  C SFH  Q +      P   L+    V   KF+     
Sbjct: 774  AVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAP 831

Query: 361  GNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 534
                      L V GP ++  + D   +VS   LK    G + P+ YG G G+  T+  +
Sbjct: 832  ATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASI 891

Query: 535  MSF 543
             ++
Sbjct: 892  RAY 894

[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
            Blight RepID=POL1_TRSVB
          Length = 2304

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD T I+SSL +L                S + D I  L  NV  AL ELY   D +EF 
Sbjct: 1954 LDRTCIYSSLLYLR---------------SADCDPIPLLHQNVQNALQELYYRQDREEFD 1998

Query: 181  RVRSFFLARLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHV 351
             +R+F+L RLP+  +   +   W  C     ++ TG    +PA VLD +     K FM  
Sbjct: 1999 NLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFMLP 2058

Query: 352  SEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNW 531
            +   N +      + VCGP +      + +    L  G  G  +   +    G +PT  +
Sbjct: 2059 AGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQIKPVHAATQGAMPTAKF 2118

Query: 532  VMSF 543
            V SF
Sbjct: 2119 VESF 2122

[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
           RepID=UPI0000163DCE
          Length = 707

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
 Frame = +1

Query: 1   LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
           LD+ ++++SL  +T      H                 L  NV+ AL+ELYLH +   F 
Sbjct: 447 LDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETWFN 491

Query: 181 RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
            +R F+  R         +W    +FH  Q +G+    P  + D    VD  +   +   
Sbjct: 492 HLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMAN 547

Query: 361 GNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRL 516
             +A F T +   + +CGP +     E  F+VST PL+    G   H  I+Y   GVGRL
Sbjct: 548 QGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRL 607

Query: 517 PTKNWVMSFGKSS 555
           P+++WV  F  S+
Sbjct: 608 PSQDWVTKFKSSA 620

[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
            RepID=POL1_BRAV
          Length = 2094

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 8/193 (4%)
 Frame = +1

Query: 1    LDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQ 180
            LD+ ++++SL  +T      H                 L  NV+ AL+ELYLH +   F 
Sbjct: 1834 LDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETWFN 1878

Query: 181  RVRSFFLARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQ 360
             +R F+  R         +W    +FH  Q +G+    P  + D    VD  +   +   
Sbjct: 1879 HLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMAN 1934

Query: 361  GNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRL 516
              +A F T +   + +CGP +     E  F+VST PL+    G   H  I+Y   GVGRL
Sbjct: 1935 QGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRL 1994

Query: 517  PTKNWVMSFGKSS 555
            P+++WV  F  S+
Sbjct: 1995 PSQDWVTKFKSSA 2007