BB909634 ( RCE08480 )

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[1][TOP]
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase n=1
            Tax=Arabidopsis thaliana RepID=O82276_ARATH
          Length = 1231

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = -2

Query: 535  KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDCPKA 359
            +IW+L  PERVR  IWL+    ++TN  + +  L  +A+C+ C   EETILHV+RDCP  
Sbjct: 905  RIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAM 964

Query: 358  MAIWSSVL 335
              IW  +L
Sbjct: 965  EPIWRRLL 972

[2][TOP]
>UniRef100_O80790 Putative non-LTR retroelement reverse transcriptase n=1
           Tax=Arabidopsis thaliana RepID=O80790_ARATH
          Length = 970

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
 Frame = -2

Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359
           +IW+L  PERVR  IWL+ H  ++TN  + +  L   A C+ C   +E+ILHV+RDCP  
Sbjct: 646 QIWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAM 705

Query: 358 MAIWSSVL 335
             IW  +L
Sbjct: 706 TPIWQRLL 713

[3][TOP]
>UniRef100_Q2HVE2 RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold n=1
           Tax=Medicago truncatula RepID=Q2HVE2_MEDTR
          Length = 729

 Score = 65.1 bits (157), Expect = 3e-09
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365
           W  +W  K P R++T IWL  H R+LTN  +SK G+     C  C   +ET++HV+RDC 
Sbjct: 464 WKTLWNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCV 523

Query: 364 KAMAIWSSVLSVN 326
            +  +W  ++  N
Sbjct: 524 HSTQVWLRLIPHN 536

[4][TOP]
>UniRef100_B9RYT8 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9RYT8_RICCO
          Length = 210

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -2

Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMG-LHHAMCAFCGDVEETILHVMRDC 368
           +W +IW+ + P++V + +WL+ H +L TN L S+   +  A+C  C   EE  LH +RDC
Sbjct: 92  VWDRIWKWQGPQKVHSTLWLLAHDKLSTNKLCSQRAIIPLAICMHCNQSEEDSLHAIRDC 151

Query: 367 PKAMAIWSSVLSV-NDRGIF 311
           P A  IW  ++   N  G F
Sbjct: 152 PFAKIIWQKLVKPDNQNGFF 171

[5][TOP]
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis
           thaliana RepID=Q9FG26_ARATH
          Length = 676

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = -2

Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359
           ++WR+ VPER R  +WL+ ++ +LTN+ + +  +  + +C  C    E+++HV+RDCP  
Sbjct: 346 RVWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAM 405

Query: 358 MAIWSSVLSVNDRGIF 311
           M IW  V+ V ++  F
Sbjct: 406 MGIWMRVVPVMEQRRF 421

[6][TOP]
>UniRef100_B2BXY8 Non-LTR retrotransposon transposase n=1 Tax=Arabidopsis cebennensis
           RepID=B2BXY8_9BRAS
          Length = 799

 Score = 64.3 bits (155), Expect = 5e-09
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = -2

Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359
           ++W++  PERV+  +WL  H+ ++TN  + +  L    +C  C   +ETI+H++RDCP  
Sbjct: 469 RVWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAM 528

Query: 358 MAIWSSVLSVNDRGIF 311
             IW+ ++    RG F
Sbjct: 529 YGIWTRIIPRRKRGTF 544

[7][TOP]
>UniRef100_Q2HRR4 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HRR4_MEDTR
          Length = 302

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365
           W  +W  + P R++T +WL+ H R+LTN  +S+ G    A    CG+ +ET+LHV+RDC 
Sbjct: 78  WKMLWEWRGPHRIQTFMWLVAHGRILTNYRRSRWGTGVSATWPCCGNADETVLHVLRDCR 137

Query: 364 KA 359
            A
Sbjct: 138 PA 139

[8][TOP]
>UniRef100_Q2HUN6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            n=1 Tax=Medicago truncatula RepID=Q2HUN6_MEDTR
          Length = 1296

 Score = 60.5 bits (145), Expect = 8e-08
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = -2

Query: 544  IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILH 383
            +W  IW+L  PE+ + LIWL  H    T SL     LHH      A C+ CG+ +E+ LH
Sbjct: 976  VWSWIWQLTAPEKYKLLIWLACHNAAPTLSL-----LHHRKMAPAATCSRCGENDESFLH 1030

Query: 382  VMRDCPKAMAIWSSVLSVNDRGIFCVGELQN 290
             +RDC  + AIW   L       F V  +Q+
Sbjct: 1031 CVRDCKHSAAIWHK-LGFVTAAFFSVSSVQD 1060

[9][TOP]
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase n=1
           Tax=Arabidopsis thaliana RepID=Q9XE45_ARATH
          Length = 732

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = -2

Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359
           ++W +  PERVR  +WL+  + ++TN  + +  L    +C  C   +E+I+HV+RDCP  
Sbjct: 567 RVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAM 626

Query: 358 MAIWSSVLS 332
             IW  ++S
Sbjct: 627 EGIWLRLIS 635

[10][TOP]
>UniRef100_B9T6V7 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9T6V7_RICCO
          Length = 139

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = -2

Query: 520 KVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCPKAMAIWS 344
           K PERV+  +WL FH +LLTN  + +  +   + CA C    E I H++RDCP +MA+W 
Sbjct: 24  KGPERVQYFLWLCFHDKLLTNHERVRWRMSDQSSCAQCTGDVEAIHHILRDCPSSMAVWL 83

Query: 343 SVL 335
            +L
Sbjct: 84  KIL 86

[11][TOP]
>UniRef100_P0C2F6 Putative ribonuclease H protein At1g65750 n=1 Tax=Arabidopsis
           thaliana RepID=RNHX1_ARATH
          Length = 620

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
 Frame = -2

Query: 532 IWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKAM 356
           +W+++VPERV+T +WL+ ++ ++T   + +  L  + +C  C    E++LHV+RDCP  +
Sbjct: 291 LWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQL 350

Query: 355 AIWSSVL 335
            IW  V+
Sbjct: 351 GIWVRVV 357

[12][TOP]
>UniRef100_Q1SN20 Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago
           truncatula RepID=Q1SN20_MEDTR
          Length = 282

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365
           W  +W  K P R++T IWL  + R+LTN  +SK G+     C  C   +ETI+HV+RDC 
Sbjct: 57  WKTLWNWKGPHRIQTFIWLAANGRILTNYRRSKWGVGISPTCPCCAREDETIIHVLRDCV 116

Query: 364 KA 359
            A
Sbjct: 117 HA 118

[13][TOP]
>UniRef100_B9HJ21 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HJ21_POPTR
          Length = 172

 Score = 58.2 bits (139), Expect = 4e-07
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -2

Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTN-SLKSKMGLHHAMCAFCGDVEETILHVMRDC 368
           +W  IW+   PER++  +W   H RL+ N + K      + +C  C    E  LHV+R+C
Sbjct: 66  VWQLIWKRSGPERIKAFLWATAHDRLMINENRKRGFPTDNPLCHNCPTDVENTLHVLREC 125

Query: 367 PKAMAIWSSVLSVND 323
           P A  +W ++L   D
Sbjct: 126 PLARMVWKTLLEQKD 140

[14][TOP]
>UniRef100_Q1SMZ7 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q1SMZ7_MEDTR
          Length = 438

 Score = 57.0 bits (136), Expect = 9e-07
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCP 365
           W  IW L+VPE+ + LIWL     + T SL  +  +  +  CA CG+ +ET LH +RDC 
Sbjct: 120 WSWIWNLQVPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCH 179

Query: 364 KAMAIWSSV 338
            + +IW  +
Sbjct: 180 FSRSIWQKI 188

[15][TOP]
>UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase n=1
           Tax=Arabidopsis thaliana RepID=Q9SJZ8_ARATH
          Length = 321

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
 Frame = -2

Query: 514 PERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKAMAIWSSV 338
           PERVR  +WL+  + ++TN  + +  L    +C  C   EETILHV+RDCP    IWS +
Sbjct: 3   PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62

Query: 337 L 335
           +
Sbjct: 63  V 63

[16][TOP]
>UniRef100_B9SYG9 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9SYG9_RICCO
          Length = 216

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
 Frame = -2

Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSL-KSKMGLHHAMCAFCGDVEETILHVMRDC 368
           IW KIW+ K P+ VR+ +WL  H+RL+T+SL   ++ L   +C  C + EE  LH +RD 
Sbjct: 79  IWEKIWKWKGPQGVRSTLWLTSHERLVTSSLCVKRLILPSLVCPRCYEHEEDTLHAIRDS 138

Query: 367 PKAMAIW 347
              + +W
Sbjct: 139 VWQLWLW 145

[17][TOP]
>UniRef100_B8BBX0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
            RepID=B8BBX0_ORYSI
          Length = 1300

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -2

Query: 541  WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCP 365
            W ++W   VP++VR  IW      L T   K K  L H +MC+ CG  EE + H +  CP
Sbjct: 963  WNQLWSCHVPQKVRIFIWRAASNSLATMVNKKKKRLEHCSMCSICGTEEEDVAHALCRCP 1022

Query: 364  KAMAIW 347
             A  +W
Sbjct: 1023 HAKYLW 1028

[18][TOP]
>UniRef100_B9T7L9 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9T7L9_RICCO
          Length = 307

 Score = 54.7 bits (130), Expect = 4e-06
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -2

Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDC 368
           +W  +W+   P+ +R  +WL+  ++LLTN    K  L +   CA C    E +LH +RDC
Sbjct: 70  LWRYVWKWDSPQGIRMFLWLVVWEKLLTNVECHKRHLTNDTSCARCSAANEDVLHALRDC 129

Query: 367 PKAMAI 350
           PK   I
Sbjct: 130 PKVKRI 135

[19][TOP]
>UniRef100_C5Z057 Putative uncharacterized protein Sb09g003970 n=1 Tax=Sorghum
           bicolor RepID=C5Z057_SORBI
          Length = 938

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = -2

Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359
           ++W+ K P +V+   WL  H RL T + +++ GL   A+C+ CG  +ET  H++  C  +
Sbjct: 779 ELWQTKAPPKVKFFFWLALHGRLWTAARRARHGLQQSAVCSLCGQQDETSDHLLLACVYS 838

Query: 358 MAIWSSVLSV 329
             +W  +LS+
Sbjct: 839 REVWFRLLSI 848

[20][TOP]
>UniRef100_C5WRS4 Putative uncharacterized protein Sb01g042140 n=1 Tax=Sorghum
           bicolor RepID=C5WRS4_SORBI
          Length = 742

 Score = 54.3 bits (129), Expect = 6e-06
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = -2

Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359
           ++W+ K P +V+   WL  H RL T + +++ GL   A+C+ CG  +ET  H++  C  +
Sbjct: 583 ELWQTKAPPKVKFFFWLALHGRLWTAARRARHGLQQTAVCSLCGQQDETSDHLLLACVYS 642

Query: 358 MAIWSSVLSV 329
             +W  +LS+
Sbjct: 643 REVWFRLLSI 652

[21][TOP]
>UniRef100_Q2QLW7 Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa
            Japonica Group RepID=Q2QLW7_ORYSJ
          Length = 1627

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -2

Query: 541  WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA--MCAFCGDVEETILHVMRDC 368
            + K+W++K P RV+   WL+    +LT     K G       C FC D  E+I H+  DC
Sbjct: 1467 YKKMWKIKAPPRVKVFSWLVLRNSILTKDNLFKRGWRKGSIKCQFC-DKSESIQHLFLDC 1525

Query: 367  PKAMAIWSSV 338
            P A  IWS V
Sbjct: 1526 PMAHFIWSVV 1535

[22][TOP]
>UniRef100_B9RIB3 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9RIB3_RICCO
          Length = 152

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILHV 380
           W+ IW+LKVP +VR  +W   H     N+L  K+ L H       +C+ CG  EE + H+
Sbjct: 77  WISIWQLKVPPKVRAFMWKCAH-----NALAIKINLVHKHCGNNGLCSNCGMQEEALEHL 131

Query: 379 MRDCPKAMAIWSS 341
           M  C +A  IW S
Sbjct: 132 MFFCDRAKLIWFS 144

[23][TOP]
>UniRef100_A2Q4Z8 RNA-directed DNA polymerase ; Ribonuclease H, putative n=1
           Tax=Medicago truncatula RepID=A2Q4Z8_MEDTR
          Length = 86

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDCP 365
           W+ IW+LK+PE+++ L+WL  H  + T SL +   +   A C+ C    ET LH + DC 
Sbjct: 13  WVWIWKLKLPEKIKFLVWLACHNSVPTISLLNHRNIAPTATCSRCNLHVETFLHCVHDCH 72

Query: 364 KAMAIW 347
            +  IW
Sbjct: 73  NSKNIW 78

[24][TOP]
>UniRef100_B9HY61 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HY61_POPTR
          Length = 171

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = -2

Query: 532 IWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHAMCAFC-GDVEETILHVMRDC 368
           IWRLK+ +++  +IW I+H  LLTNSL+ K  L  +   +C    EE ILH +RDC
Sbjct: 67  IWRLKILKKIWLMIWKIWHDCLLTNSLRFKRHLASSSTCYCYNKEEEDILHCLRDC 122

[25][TOP]
>UniRef100_A4PSD6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           n=1 Tax=Medicago truncatula RepID=A4PSD6_MEDTR
          Length = 869

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
 Frame = -2

Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILHV 380
           W  I + K+ E+ + LIWL  H  L T +L     LHH      A CA CG  +E++ H 
Sbjct: 551 WSWILKKKISEKYKFLIWLACHDSLPTAAL-----LHHRQIIASATCARCGVSDESVFHC 605

Query: 379 MRDCPKAMAIWSSV-------LSVNDRGIFC 308
           +RDCP +  IW  +        +V D  I+C
Sbjct: 606 IRDCPFSKIIWHHIGFSEPYFFAVTDIEIWC 636