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[1][TOP]
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=O82276_ARATH
Length = 1231
Score = 67.8 bits (164), Expect = 5e-10
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDCPKA 359
+IW+L PERVR IWL+ ++TN + + L +A+C+ C EETILHV+RDCP
Sbjct: 905 RIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAM 964
Query: 358 MAIWSSVL 335
IW +L
Sbjct: 965 EPIWRRLL 972
[2][TOP]
>UniRef100_O80790 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=O80790_ARATH
Length = 970
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359
+IW+L PERVR IWL+ H ++TN + + L A C+ C +E+ILHV+RDCP
Sbjct: 646 QIWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAM 705
Query: 358 MAIWSSVL 335
IW +L
Sbjct: 706 TPIWQRLL 713
[3][TOP]
>UniRef100_Q2HVE2 RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold n=1
Tax=Medicago truncatula RepID=Q2HVE2_MEDTR
Length = 729
Score = 65.1 bits (157), Expect = 3e-09
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365
W +W K P R++T IWL H R+LTN +SK G+ C C +ET++HV+RDC
Sbjct: 464 WKTLWNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCV 523
Query: 364 KAMAIWSSVLSVN 326
+ +W ++ N
Sbjct: 524 HSTQVWLRLIPHN 536
[4][TOP]
>UniRef100_B9RYT8 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9RYT8_RICCO
Length = 210
Score = 64.7 bits (156), Expect = 4e-09
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = -2
Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMG-LHHAMCAFCGDVEETILHVMRDC 368
+W +IW+ + P++V + +WL+ H +L TN L S+ + A+C C EE LH +RDC
Sbjct: 92 VWDRIWKWQGPQKVHSTLWLLAHDKLSTNKLCSQRAIIPLAICMHCNQSEEDSLHAIRDC 151
Query: 367 PKAMAIWSSVLSV-NDRGIF 311
P A IW ++ N G F
Sbjct: 152 PFAKIIWQKLVKPDNQNGFF 171
[5][TOP]
>UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis
thaliana RepID=Q9FG26_ARATH
Length = 676
Score = 64.3 bits (155), Expect = 5e-09
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359
++WR+ VPER R +WL+ ++ +LTN+ + + + + +C C E+++HV+RDCP
Sbjct: 346 RVWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAM 405
Query: 358 MAIWSSVLSVNDRGIF 311
M IW V+ V ++ F
Sbjct: 406 MGIWMRVVPVMEQRRF 421
[6][TOP]
>UniRef100_B2BXY8 Non-LTR retrotransposon transposase n=1 Tax=Arabidopsis cebennensis
RepID=B2BXY8_9BRAS
Length = 799
Score = 64.3 bits (155), Expect = 5e-09
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359
++W++ PERV+ +WL H+ ++TN + + L +C C +ETI+H++RDCP
Sbjct: 469 RVWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAM 528
Query: 358 MAIWSSVLSVNDRGIF 311
IW+ ++ RG F
Sbjct: 529 YGIWTRIIPRRKRGTF 544
[7][TOP]
>UniRef100_Q2HRR4 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HRR4_MEDTR
Length = 302
Score = 60.8 bits (146), Expect = 6e-08
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365
W +W + P R++T +WL+ H R+LTN +S+ G A CG+ +ET+LHV+RDC
Sbjct: 78 WKMLWEWRGPHRIQTFMWLVAHGRILTNYRRSRWGTGVSATWPCCGNADETVLHVLRDCR 137
Query: 364 KA 359
A
Sbjct: 138 PA 139
[8][TOP]
>UniRef100_Q2HUN6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
n=1 Tax=Medicago truncatula RepID=Q2HUN6_MEDTR
Length = 1296
Score = 60.5 bits (145), Expect = 8e-08
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Frame = -2
Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILH 383
+W IW+L PE+ + LIWL H T SL LHH A C+ CG+ +E+ LH
Sbjct: 976 VWSWIWQLTAPEKYKLLIWLACHNAAPTLSL-----LHHRKMAPAATCSRCGENDESFLH 1030
Query: 382 VMRDCPKAMAIWSSVLSVNDRGIFCVGELQN 290
+RDC + AIW L F V +Q+
Sbjct: 1031 CVRDCKHSAAIWHK-LGFVTAAFFSVSSVQD 1060
[9][TOP]
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9XE45_ARATH
Length = 732
Score = 59.3 bits (142), Expect = 2e-07
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359
++W + PERVR +WL+ + ++TN + + L +C C +E+I+HV+RDCP
Sbjct: 567 RVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAM 626
Query: 358 MAIWSSVLS 332
IW ++S
Sbjct: 627 EGIWLRLIS 635
[10][TOP]
>UniRef100_B9T6V7 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9T6V7_RICCO
Length = 139
Score = 59.3 bits (142), Expect = 2e-07
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = -2
Query: 520 KVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCPKAMAIWS 344
K PERV+ +WL FH +LLTN + + + + CA C E I H++RDCP +MA+W
Sbjct: 24 KGPERVQYFLWLCFHDKLLTNHERVRWRMSDQSSCAQCTGDVEAIHHILRDCPSSMAVWL 83
Query: 343 SVL 335
+L
Sbjct: 84 KIL 86
[11][TOP]
>UniRef100_P0C2F6 Putative ribonuclease H protein At1g65750 n=1 Tax=Arabidopsis
thaliana RepID=RNHX1_ARATH
Length = 620
Score = 58.9 bits (141), Expect = 2e-07
Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Frame = -2
Query: 532 IWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKAM 356
+W+++VPERV+T +WL+ ++ ++T + + L + +C C E++LHV+RDCP +
Sbjct: 291 LWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQL 350
Query: 355 AIWSSVL 335
IW V+
Sbjct: 351 GIWVRVV 357
[12][TOP]
>UniRef100_Q1SN20 Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago
truncatula RepID=Q1SN20_MEDTR
Length = 282
Score = 58.5 bits (140), Expect = 3e-07
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365
W +W K P R++T IWL + R+LTN +SK G+ C C +ETI+HV+RDC
Sbjct: 57 WKTLWNWKGPHRIQTFIWLAANGRILTNYRRSKWGVGISPTCPCCAREDETIIHVLRDCV 116
Query: 364 KA 359
A
Sbjct: 117 HA 118
[13][TOP]
>UniRef100_B9HJ21 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HJ21_POPTR
Length = 172
Score = 58.2 bits (139), Expect = 4e-07
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -2
Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTN-SLKSKMGLHHAMCAFCGDVEETILHVMRDC 368
+W IW+ PER++ +W H RL+ N + K + +C C E LHV+R+C
Sbjct: 66 VWQLIWKRSGPERIKAFLWATAHDRLMINENRKRGFPTDNPLCHNCPTDVENTLHVLREC 125
Query: 367 PKAMAIWSSVLSVND 323
P A +W ++L D
Sbjct: 126 PLARMVWKTLLEQKD 140
[14][TOP]
>UniRef100_Q1SMZ7 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q1SMZ7_MEDTR
Length = 438
Score = 57.0 bits (136), Expect = 9e-07
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCP 365
W IW L+VPE+ + LIWL + T SL + + + CA CG+ +ET LH +RDC
Sbjct: 120 WSWIWNLQVPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCH 179
Query: 364 KAMAIWSSV 338
+ +IW +
Sbjct: 180 FSRSIWQKI 188
[15][TOP]
>UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase n=1
Tax=Arabidopsis thaliana RepID=Q9SJZ8_ARATH
Length = 321
Score = 56.6 bits (135), Expect = 1e-06
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = -2
Query: 514 PERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKAMAIWSSV 338
PERVR +WL+ + ++TN + + L +C C EETILHV+RDCP IWS +
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 337 L 335
+
Sbjct: 63 V 63
[16][TOP]
>UniRef100_B9SYG9 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9SYG9_RICCO
Length = 216
Score = 55.5 bits (132), Expect = 3e-06
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = -2
Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSL-KSKMGLHHAMCAFCGDVEETILHVMRDC 368
IW KIW+ K P+ VR+ +WL H+RL+T+SL ++ L +C C + EE LH +RD
Sbjct: 79 IWEKIWKWKGPQGVRSTLWLTSHERLVTSSLCVKRLILPSLVCPRCYEHEEDTLHAIRDS 138
Query: 367 PKAMAIW 347
+ +W
Sbjct: 139 VWQLWLW 145
[17][TOP]
>UniRef100_B8BBX0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BBX0_ORYSI
Length = 1300
Score = 55.5 bits (132), Expect = 3e-06
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCP 365
W ++W VP++VR IW L T K K L H +MC+ CG EE + H + CP
Sbjct: 963 WNQLWSCHVPQKVRIFIWRAASNSLATMVNKKKKRLEHCSMCSICGTEEEDVAHALCRCP 1022
Query: 364 KAMAIW 347
A +W
Sbjct: 1023 HAKYLW 1028
[18][TOP]
>UniRef100_B9T7L9 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9T7L9_RICCO
Length = 307
Score = 54.7 bits (130), Expect = 4e-06
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -2
Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDC 368
+W +W+ P+ +R +WL+ ++LLTN K L + CA C E +LH +RDC
Sbjct: 70 LWRYVWKWDSPQGIRMFLWLVVWEKLLTNVECHKRHLTNDTSCARCSAANEDVLHALRDC 129
Query: 367 PKAMAI 350
PK I
Sbjct: 130 PKVKRI 135
[19][TOP]
>UniRef100_C5Z057 Putative uncharacterized protein Sb09g003970 n=1 Tax=Sorghum
bicolor RepID=C5Z057_SORBI
Length = 938
Score = 54.3 bits (129), Expect = 6e-06
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359
++W+ K P +V+ WL H RL T + +++ GL A+C+ CG +ET H++ C +
Sbjct: 779 ELWQTKAPPKVKFFFWLALHGRLWTAARRARHGLQQSAVCSLCGQQDETSDHLLLACVYS 838
Query: 358 MAIWSSVLSV 329
+W +LS+
Sbjct: 839 REVWFRLLSI 848
[20][TOP]
>UniRef100_C5WRS4 Putative uncharacterized protein Sb01g042140 n=1 Tax=Sorghum
bicolor RepID=C5WRS4_SORBI
Length = 742
Score = 54.3 bits (129), Expect = 6e-06
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -2
Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359
++W+ K P +V+ WL H RL T + +++ GL A+C+ CG +ET H++ C +
Sbjct: 583 ELWQTKAPPKVKFFFWLALHGRLWTAARRARHGLQQTAVCSLCGQQDETSDHLLLACVYS 642
Query: 358 MAIWSSVLSV 329
+W +LS+
Sbjct: 643 REVWFRLLSI 652
[21][TOP]
>UniRef100_Q2QLW7 Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa
Japonica Group RepID=Q2QLW7_ORYSJ
Length = 1627
Score = 53.9 bits (128), Expect = 7e-06
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA--MCAFCGDVEETILHVMRDC 368
+ K+W++K P RV+ WL+ +LT K G C FC D E+I H+ DC
Sbjct: 1467 YKKMWKIKAPPRVKVFSWLVLRNSILTKDNLFKRGWRKGSIKCQFC-DKSESIQHLFLDC 1525
Query: 367 PKAMAIWSSV 338
P A IWS V
Sbjct: 1526 PMAHFIWSVV 1535
[22][TOP]
>UniRef100_B9RIB3 Putative uncharacterized protein n=1 Tax=Ricinus communis
RepID=B9RIB3_RICCO
Length = 152
Score = 53.9 bits (128), Expect = 7e-06
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILHV 380
W+ IW+LKVP +VR +W H N+L K+ L H +C+ CG EE + H+
Sbjct: 77 WISIWQLKVPPKVRAFMWKCAH-----NALAIKINLVHKHCGNNGLCSNCGMQEEALEHL 131
Query: 379 MRDCPKAMAIWSS 341
M C +A IW S
Sbjct: 132 MFFCDRAKLIWFS 144
[23][TOP]
>UniRef100_A2Q4Z8 RNA-directed DNA polymerase ; Ribonuclease H, putative n=1
Tax=Medicago truncatula RepID=A2Q4Z8_MEDTR
Length = 86
Score = 53.9 bits (128), Expect = 7e-06
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDCP 365
W+ IW+LK+PE+++ L+WL H + T SL + + A C+ C ET LH + DC
Sbjct: 13 WVWIWKLKLPEKIKFLVWLACHNSVPTISLLNHRNIAPTATCSRCNLHVETFLHCVHDCH 72
Query: 364 KAMAIW 347
+ IW
Sbjct: 73 NSKNIW 78
[24][TOP]
>UniRef100_B9HY61 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HY61_POPTR
Length = 171
Score = 53.5 bits (127), Expect = 1e-05
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -2
Query: 532 IWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHAMCAFC-GDVEETILHVMRDC 368
IWRLK+ +++ +IW I+H LLTNSL+ K L + +C EE ILH +RDC
Sbjct: 67 IWRLKILKKIWLMIWKIWHDCLLTNSLRFKRHLASSSTCYCYNKEEEDILHCLRDC 122
[25][TOP]
>UniRef100_A4PSD6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
n=1 Tax=Medicago truncatula RepID=A4PSD6_MEDTR
Length = 869
Score = 53.5 bits (127), Expect = 1e-05
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Frame = -2
Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILHV 380
W I + K+ E+ + LIWL H L T +L LHH A CA CG +E++ H
Sbjct: 551 WSWILKKKISEKYKFLIWLACHDSLPTAAL-----LHHRQIIASATCARCGVSDESVFHC 605
Query: 379 MRDCPKAMAIWSSV-------LSVNDRGIFC 308
+RDCP + IW + +V D I+C
Sbjct: 606 IRDCPFSKIIWHHIGFSEPYFFAVTDIEIWC 636