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[1][TOP] >UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O82276_ARATH Length = 1231 Score = 67.8 bits (164), Expect = 5e-10 Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDCPKA 359 +IW+L PERVR IWL+ ++TN + + L +A+C+ C EETILHV+RDCP Sbjct: 905 RIWKLITPERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAM 964 Query: 358 MAIWSSVL 335 IW +L Sbjct: 965 EPIWRRLL 972 [2][TOP] >UniRef100_O80790 Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O80790_ARATH Length = 970 Score = 66.6 bits (161), Expect = 1e-09 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359 +IW+L PERVR IWL+ H ++TN + + L A C+ C +E+ILHV+RDCP Sbjct: 646 QIWKLVAPERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAM 705 Query: 358 MAIWSSVL 335 IW +L Sbjct: 706 TPIWQRLL 713 [3][TOP] >UniRef100_Q2HVE2 RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=Q2HVE2_MEDTR Length = 729 Score = 65.1 bits (157), Expect = 3e-09 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365 W +W K P R++T IWL H R+LTN +SK G+ C C +ET++HV+RDC Sbjct: 464 WKTLWNWKGPHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCV 523 Query: 364 KAMAIWSSVLSVN 326 + +W ++ N Sbjct: 524 HSTQVWLRLIPHN 536 [4][TOP] >UniRef100_B9RYT8 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9RYT8_RICCO Length = 210 Score = 64.7 bits (156), Expect = 4e-09 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Frame = -2 Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMG-LHHAMCAFCGDVEETILHVMRDC 368 +W +IW+ + P++V + +WL+ H +L TN L S+ + A+C C EE LH +RDC Sbjct: 92 VWDRIWKWQGPQKVHSTLWLLAHDKLSTNKLCSQRAIIPLAICMHCNQSEEDSLHAIRDC 151 Query: 367 PKAMAIWSSVLSV-NDRGIF 311 P A IW ++ N G F Sbjct: 152 PFAKIIWQKLVKPDNQNGFF 171 [5][TOP] >UniRef100_Q9FG26 Non-LTR retroelement reverse transcriptase-like n=1 Tax=Arabidopsis thaliana RepID=Q9FG26_ARATH Length = 676 Score = 64.3 bits (155), Expect = 5e-09 Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359 ++WR+ VPER R +WL+ ++ +LTN+ + + + + +C C E+++HV+RDCP Sbjct: 346 RVWRVMVPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAM 405 Query: 358 MAIWSSVLSVNDRGIF 311 M IW V+ V ++ F Sbjct: 406 MGIWMRVVPVMEQRRF 421 [6][TOP] >UniRef100_B2BXY8 Non-LTR retrotransposon transposase n=1 Tax=Arabidopsis cebennensis RepID=B2BXY8_9BRAS Length = 799 Score = 64.3 bits (155), Expect = 5e-09 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359 ++W++ PERV+ +WL H+ ++TN + + L +C C +ETI+H++RDCP Sbjct: 469 RVWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAM 528 Query: 358 MAIWSSVLSVNDRGIF 311 IW+ ++ RG F Sbjct: 529 YGIWTRIIPRRKRGTF 544 [7][TOP] >UniRef100_Q2HRR4 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HRR4_MEDTR Length = 302 Score = 60.8 bits (146), Expect = 6e-08 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365 W +W + P R++T +WL+ H R+LTN +S+ G A CG+ +ET+LHV+RDC Sbjct: 78 WKMLWEWRGPHRIQTFMWLVAHGRILTNYRRSRWGTGVSATWPCCGNADETVLHVLRDCR 137 Query: 364 KA 359 A Sbjct: 138 PA 139 [8][TOP] >UniRef100_Q2HUN6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HUN6_MEDTR Length = 1296 Score = 60.5 bits (145), Expect = 8e-08 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 6/91 (6%) Frame = -2 Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILH 383 +W IW+L PE+ + LIWL H T SL LHH A C+ CG+ +E+ LH Sbjct: 976 VWSWIWQLTAPEKYKLLIWLACHNAAPTLSL-----LHHRKMAPAATCSRCGENDESFLH 1030 Query: 382 VMRDCPKAMAIWSSVLSVNDRGIFCVGELQN 290 +RDC + AIW L F V +Q+ Sbjct: 1031 CVRDCKHSAAIWHK-LGFVTAAFFSVSSVQD 1060 [9][TOP] >UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=Q9XE45_ARATH Length = 732 Score = 59.3 bits (142), Expect = 2e-07 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKA 359 ++W + PERVR +WL+ + ++TN + + L +C C +E+I+HV+RDCP Sbjct: 567 RVWSVTAPERVRLFLWLVAQQAIMTNQERHRRHLSTTTICQVCKGAKESIIHVLRDCPAM 626 Query: 358 MAIWSSVLS 332 IW ++S Sbjct: 627 EGIWLRLIS 635 [10][TOP] >UniRef100_B9T6V7 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T6V7_RICCO Length = 139 Score = 59.3 bits (142), Expect = 2e-07 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%) Frame = -2 Query: 520 KVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCPKAMAIWS 344 K PERV+ +WL FH +LLTN + + + + CA C E I H++RDCP +MA+W Sbjct: 24 KGPERVQYFLWLCFHDKLLTNHERVRWRMSDQSSCAQCTGDVEAIHHILRDCPSSMAVWL 83 Query: 343 SVL 335 +L Sbjct: 84 KIL 86 [11][TOP] >UniRef100_P0C2F6 Putative ribonuclease H protein At1g65750 n=1 Tax=Arabidopsis thaliana RepID=RNHX1_ARATH Length = 620 Score = 58.9 bits (141), Expect = 2e-07 Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Frame = -2 Query: 532 IWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKAM 356 +W+++VPERV+T +WL+ ++ ++T + + L + +C C E++LHV+RDCP + Sbjct: 291 LWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQL 350 Query: 355 AIWSSVL 335 IW V+ Sbjct: 351 GIWVRVV 357 [12][TOP] >UniRef100_Q1SN20 Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=Q1SN20_MEDTR Length = 282 Score = 58.5 bits (140), Expect = 3e-07 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLH-HAMCAFCGDVEETILHVMRDCP 365 W +W K P R++T IWL + R+LTN +SK G+ C C +ETI+HV+RDC Sbjct: 57 WKTLWNWKGPHRIQTFIWLAANGRILTNYRRSKWGVGISPTCPCCAREDETIIHVLRDCV 116 Query: 364 KA 359 A Sbjct: 117 HA 118 [13][TOP] >UniRef100_B9HJ21 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HJ21_POPTR Length = 172 Score = 58.2 bits (139), Expect = 4e-07 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -2 Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTN-SLKSKMGLHHAMCAFCGDVEETILHVMRDC 368 +W IW+ PER++ +W H RL+ N + K + +C C E LHV+R+C Sbjct: 66 VWQLIWKRSGPERIKAFLWATAHDRLMINENRKRGFPTDNPLCHNCPTDVENTLHVLREC 125 Query: 367 PKAMAIWSSVLSVND 323 P A +W ++L D Sbjct: 126 PLARMVWKTLLEQKD 140 [14][TOP] >UniRef100_Q1SMZ7 Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q1SMZ7_MEDTR Length = 438 Score = 57.0 bits (136), Expect = 9e-07 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCP 365 W IW L+VPE+ + LIWL + T SL + + + CA CG+ +ET LH +RDC Sbjct: 120 WSWIWNLQVPEKYKFLIWLACQNVVPTLSLLHRRNIAPSPTCARCGEEDETFLHCVRDCH 179 Query: 364 KAMAIWSSV 338 + +IW + Sbjct: 180 FSRSIWQKI 188 [15][TOP] >UniRef100_Q9SJZ8 Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=Q9SJZ8_ARATH Length = 321 Score = 56.6 bits (135), Expect = 1e-06 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Frame = -2 Query: 514 PERVRTLIWLIFHKRLLTNSLKSKMGLHHA-MCAFCGDVEETILHVMRDCPKAMAIWSSV 338 PERVR +WL+ + ++TN + + L +C C EETILHV+RDCP IWS + Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62 Query: 337 L 335 + Sbjct: 63 V 63 [16][TOP] >UniRef100_B9SYG9 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9SYG9_RICCO Length = 216 Score = 55.5 bits (132), Expect = 3e-06 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = -2 Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSL-KSKMGLHHAMCAFCGDVEETILHVMRDC 368 IW KIW+ K P+ VR+ +WL H+RL+T+SL ++ L +C C + EE LH +RD Sbjct: 79 IWEKIWKWKGPQGVRSTLWLTSHERLVTSSLCVKRLILPSLVCPRCYEHEEDTLHAIRDS 138 Query: 367 PKAMAIW 347 + +W Sbjct: 139 VWQLWLW 145 [17][TOP] >UniRef100_B8BBX0 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=B8BBX0_ORYSI Length = 1300 Score = 55.5 bits (132), Expect = 3e-06 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCP 365 W ++W VP++VR IW L T K K L H +MC+ CG EE + H + CP Sbjct: 963 WNQLWSCHVPQKVRIFIWRAASNSLATMVNKKKKRLEHCSMCSICGTEEEDVAHALCRCP 1022 Query: 364 KAMAIW 347 A +W Sbjct: 1023 HAKYLW 1028 [18][TOP] >UniRef100_B9T7L9 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9T7L9_RICCO Length = 307 Score = 54.7 bits (130), Expect = 4e-06 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = -2 Query: 544 IWMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDC 368 +W +W+ P+ +R +WL+ ++LLTN K L + CA C E +LH +RDC Sbjct: 70 LWRYVWKWDSPQGIRMFLWLVVWEKLLTNVECHKRHLTNDTSCARCSAANEDVLHALRDC 129 Query: 367 PKAMAI 350 PK I Sbjct: 130 PKVKRI 135 [19][TOP] >UniRef100_C5Z057 Putative uncharacterized protein Sb09g003970 n=1 Tax=Sorghum bicolor RepID=C5Z057_SORBI Length = 938 Score = 54.3 bits (129), Expect = 6e-06 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359 ++W+ K P +V+ WL H RL T + +++ GL A+C+ CG +ET H++ C + Sbjct: 779 ELWQTKAPPKVKFFFWLALHGRLWTAARRARHGLQQSAVCSLCGQQDETSDHLLLACVYS 838 Query: 358 MAIWSSVLSV 329 +W +LS+ Sbjct: 839 REVWFRLLSI 848 [20][TOP] >UniRef100_C5WRS4 Putative uncharacterized protein Sb01g042140 n=1 Tax=Sorghum bicolor RepID=C5WRS4_SORBI Length = 742 Score = 54.3 bits (129), Expect = 6e-06 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -2 Query: 535 KIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH-AMCAFCGDVEETILHVMRDCPKA 359 ++W+ K P +V+ WL H RL T + +++ GL A+C+ CG +ET H++ C + Sbjct: 583 ELWQTKAPPKVKFFFWLALHGRLWTAARRARHGLQQTAVCSLCGQQDETSDHLLLACVYS 642 Query: 358 MAIWSSVLSV 329 +W +LS+ Sbjct: 643 REVWFRLLSI 652 [21][TOP] >UniRef100_Q2QLW7 Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLW7_ORYSJ Length = 1627 Score = 53.9 bits (128), Expect = 7e-06 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHA--MCAFCGDVEETILHVMRDC 368 + K+W++K P RV+ WL+ +LT K G C FC D E+I H+ DC Sbjct: 1467 YKKMWKIKAPPRVKVFSWLVLRNSILTKDNLFKRGWRKGSIKCQFC-DKSESIQHLFLDC 1525 Query: 367 PKAMAIWSSV 338 P A IWS V Sbjct: 1526 PMAHFIWSVV 1535 [22][TOP] >UniRef100_B9RIB3 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9RIB3_RICCO Length = 152 Score = 53.9 bits (128), Expect = 7e-06 Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 6/73 (8%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILHV 380 W+ IW+LKVP +VR +W H N+L K+ L H +C+ CG EE + H+ Sbjct: 77 WISIWQLKVPPKVRAFMWKCAH-----NALAIKINLVHKHCGNNGLCSNCGMQEEALEHL 131 Query: 379 MRDCPKAMAIWSS 341 M C +A IW S Sbjct: 132 MFFCDRAKLIWFS 144 [23][TOP] >UniRef100_A2Q4Z8 RNA-directed DNA polymerase ; Ribonuclease H, putative n=1 Tax=Medicago truncatula RepID=A2Q4Z8_MEDTR Length = 86 Score = 53.9 bits (128), Expect = 7e-06 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGL-HHAMCAFCGDVEETILHVMRDCP 365 W+ IW+LK+PE+++ L+WL H + T SL + + A C+ C ET LH + DC Sbjct: 13 WVWIWKLKLPEKIKFLVWLACHNSVPTISLLNHRNIAPTATCSRCNLHVETFLHCVHDCH 72 Query: 364 KAMAIW 347 + IW Sbjct: 73 NSKNIW 78 [24][TOP] >UniRef100_B9HY61 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HY61_POPTR Length = 171 Score = 53.5 bits (127), Expect = 1e-05 Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Frame = -2 Query: 532 IWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHHAMCAFC-GDVEETILHVMRDC 368 IWRLK+ +++ +IW I+H LLTNSL+ K L + +C EE ILH +RDC Sbjct: 67 IWRLKILKKIWLMIWKIWHDCLLTNSLRFKRHLASSSTCYCYNKEEEDILHCLRDC 122 [25][TOP] >UniRef100_A4PSD6 RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=1 Tax=Medicago truncatula RepID=A4PSD6_MEDTR Length = 869 Score = 53.5 bits (127), Expect = 1e-05 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 13/91 (14%) Frame = -2 Query: 541 WMKIWRLKVPERVRTLIWLIFHKRLLTNSLKSKMGLHH------AMCAFCGDVEETILHV 380 W I + K+ E+ + LIWL H L T +L LHH A CA CG +E++ H Sbjct: 551 WSWILKKKISEKYKFLIWLACHDSLPTAAL-----LHHRQIIASATCARCGVSDESVFHC 605 Query: 379 MRDCPKAMAIWSSV-------LSVNDRGIFC 308 +RDCP + IW + +V D I+C Sbjct: 606 IRDCPFSKIIWHHIGFSEPYFFAVTDIEIWC 636