[UP]
[1][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 108 bits (271), Expect = 2e-22
Identities = 49/74 (66%), Positives = 66/74 (89%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+HVL++LN L P+ER+IIRLR+G EDG+++SLSEIG +FGLS+ER+ QLE+RALY+LK+C
Sbjct: 475 KHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQC 534
Query: 386 LVSQGLDAYADKLI 345
L S GL+AYAD L+
Sbjct: 535 LASHGLEAYADLLV 548
[2][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 103 bits (257), Expect = 9e-21
Identities = 49/73 (67%), Positives = 62/73 (84%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+H+ +LN L KERRIIRLRFG EDG+++SLSEIG +FGLS+ER+ QLE+RALY+LK+C
Sbjct: 462 KHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQC 521
Query: 386 LVSQGLDAYADKL 348
+ S GLDAYAD L
Sbjct: 522 VGSHGLDAYADLL 534
[3][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
Length = 487
Score = 102 bits (254), Expect = 2e-20
Identities = 50/73 (68%), Positives = 62/73 (84%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RALYRLK+ +
Sbjct: 415 HVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 474
Query: 383 VSQGLDAYADKLI 345
S GL AYAD L+
Sbjct: 475 NSHGLHAYADLLV 487
[4][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LD95_ARATH
Length = 547
Score = 102 bits (254), Expect = 2e-20
Identities = 50/73 (68%), Positives = 62/73 (84%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RALYRLK+ +
Sbjct: 475 HVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 534
Query: 383 VSQGLDAYADKLI 345
S GL AYAD L+
Sbjct: 535 NSHGLHAYADLLV 547
[5][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001983B83
Length = 561
Score = 96.3 bits (238), Expect = 1e-18
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RAL++LK+C
Sbjct: 488 QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 547
Query: 386 LVSQGLDAYADKLI 345
L S GL++Y D L+
Sbjct: 548 LSSHGLESYTDLLV 561
[6][TOP]
>UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PT61_VITVI
Length = 284
Score = 96.3 bits (238), Expect = 1e-18
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RAL++LK+C
Sbjct: 211 QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 270
Query: 386 LVSQGLDAYADKLI 345
L S GL++Y D L+
Sbjct: 271 LSSHGLESYTDLLV 284
[7][TOP]
>UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84LK8_ORYSJ
Length = 572
Score = 73.6 bits (179), Expect = 1e-11
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRAL +LK+
Sbjct: 499 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 558
Query: 386 LVSQGLDAYADKL 348
QG D Y D L
Sbjct: 559 ASLQGFDVYFDLL 571
[8][TOP]
>UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BC85_ORYSI
Length = 537
Score = 73.6 bits (179), Expect = 1e-11
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRAL +LK+
Sbjct: 464 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 523
Query: 386 LVSQGLDAYADKL 348
QG D Y D L
Sbjct: 524 ASLQGFDVYFDLL 536
[9][TOP]
>UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BR19_ORYSJ
Length = 497
Score = 73.6 bits (179), Expect = 1e-11
Identities = 37/73 (50%), Positives = 49/73 (67%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRAL +LK+
Sbjct: 424 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 483
Query: 386 LVSQGLDAYADKL 348
QG D Y D L
Sbjct: 484 ASLQGFDVYFDLL 496
[10][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 68.9 bits (167), Expect = 2e-10
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VLN L P+E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 296 VLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 355
Query: 371 LDAYAD 354
L Y +
Sbjct: 356 LKDYLE 361
[11][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L1K5_THERP
Length = 340
Score = 68.9 bits (167), Expect = 2e-10
Identities = 29/70 (41%), Positives = 49/70 (70%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
R + +L L P+ER +++LR+G DGE R+L+E+G++ G+SRER+ Q+EN AL +L++
Sbjct: 269 RDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRRI 328
Query: 386 LVSQGLDAYA 357
+ + YA
Sbjct: 329 ARERLAEYYA 338
[12][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
JW/NM-WN-LF RepID=B2A1Z3_NATTJ
Length = 360
Score = 68.6 bits (166), Expect = 3e-10
Identities = 31/66 (46%), Positives = 50/66 (75%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L P+E++++RLRFG +DG+ R+L E+G+ FG++RERI Q+E +AL +L+ + S+
Sbjct: 295 VLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKR 354
Query: 371 LDAYAD 354
L Y D
Sbjct: 355 LKDYLD 360
[13][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
RepID=C0GBZ7_9FIRM
Length = 372
Score = 68.6 bits (166), Expect = 3e-10
Identities = 30/67 (44%), Positives = 49/67 (73%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L P+E++++ LRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ + S+
Sbjct: 306 DVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSK 365
Query: 374 GLDAYAD 354
L Y +
Sbjct: 366 RLKDYLE 372
[14][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 68.6 bits (166), Expect = 3e-10
Identities = 32/65 (49%), Positives = 47/65 (72%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +LK+ +Q
Sbjct: 449 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQ 508
Query: 374 GLDAY 360
L Y
Sbjct: 509 VLQEY 513
[15][TOP]
>UniRef100_B1VYB1 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
griseus NBRC 13350 RepID=B1VYB1_STRGG
Length = 363
Score = 68.2 bits (165), Expect = 4e-10
Identities = 32/70 (45%), Positives = 48/70 (68%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G EDG R+L EIG IFG++RERI Q+E++ L RL+
Sbjct: 294 HLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDHA 353
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 354 FADQLRGYLD 363
[16][TOP]
>UniRef100_C5D2W5 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D2W5_GEOSW
Length = 831
Score = 67.8 bits (164), Expect = 5e-10
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = -2
Query: 533 PKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
P++ +II RFGF GEE +L EIGE+FG+SRERI Q+EN+AL LKKC +G
Sbjct: 775 PRDWKIILYRFGFMTGEEMTLQEIGELFGVSRERIRQIENKALKHLKKCPALKG 828
[17][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CIZ0_9CHLR
Length = 390
Score = 67.8 bits (164), Expect = 5e-10
Identities = 34/69 (49%), Positives = 47/69 (68%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+ + L+KL +ERRII LRFG EDG+ R+L E+G FG++RERI Q+E +AL +L+
Sbjct: 322 ISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPTY 381
Query: 380 SQGLDAYAD 354
S L Y D
Sbjct: 382 SHRLRGYLD 390
[18][TOP]
>UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces
roseosporus NRRL 15998 RepID=UPI0001AEF979
Length = 363
Score = 67.4 bits (163), Expect = 7e-10
Identities = 31/71 (43%), Positives = 49/71 (69%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L RL+
Sbjct: 293 QHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDH 352
Query: 386 LVSQGLDAYAD 354
+ L Y D
Sbjct: 353 AFADQLRGYLD 363
[19][TOP]
>UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440
RepID=A4X4X9_SALTO
Length = 332
Score = 67.4 bits (163), Expect = 7e-10
Identities = 33/70 (47%), Positives = 48/70 (68%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ + VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L++L+
Sbjct: 262 QEMCGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLHKLRAP 321
Query: 386 LVSQGLDAYA 357
+Q L+AYA
Sbjct: 322 ERAQRLEAYA 331
[20][TOP]
>UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74
RepID=B5GE88_9ACTO
Length = 338
Score = 67.4 bits (163), Expect = 7e-10
Identities = 30/71 (42%), Positives = 50/71 (70%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
RH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L+
Sbjct: 268 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 327
Query: 386 LVSQGLDAYAD 354
+ + L Y D
Sbjct: 328 VFADQLRGYLD 338
[21][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
RepID=Q0SRH3_CLOPS
Length = 366
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 358 SKKLKDYLD 366
[22][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 358 SKKLKDYLD 366
[23][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 67.0 bits (162), Expect = 9e-10
Identities = 30/66 (45%), Positives = 47/66 (71%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E +++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 323 VLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKK 382
Query: 371 LDAYAD 354
L Y +
Sbjct: 383 LKDYLE 388
[24][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
Eklund 17B RepID=B2TMC7_CLOBB
Length = 374
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 306 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 365
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 366 SKKLKDYLD 374
[25][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
8052 RepID=A6LRQ7_CLOB8
Length = 376
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 308 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 367
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 368 SKKLKDYLD 376
[26][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
RepID=A5N6R2_CLOK5
Length = 354
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 286 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 345
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 346 SKKLKDYLD 354
[27][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
RepID=A0Q1P4_CLONN
Length = 368
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 360 SKKLKDYLD 368
[28][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
RepID=Q0TNV3_CLOP1
Length = 366
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 358 SKKLKDYLD 366
[29][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
RepID=C6PTX7_9CLOT
Length = 361
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 293 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 352
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 353 SKKLKDYLD 361
[30][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
1873 RepID=C5VRR6_CLOBO
Length = 368
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 360 SKKLKDYLD 368
[31][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
RepID=B2V2K8_CLOBA
Length = 374
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 306 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 365
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 366 SKKLKDYLD 374
[32][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
RepID=C1IAB3_9CLOT
Length = 370
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 302 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 361
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 362 SKKLKDYLD 370
[33][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
RepID=B1QWY9_CLOBU
Length = 369
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 301 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 360
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 361 SKKLKDYLD 369
[34][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
RepID=A5I618_CLOBH
Length = 361
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 293 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 352
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 353 SKKLKDYLD 361
[35][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
Eklund RepID=B1BDC8_CLOBO
Length = 368
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 360 SKKLKDYLD 368
[36][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 67.0 bits (162), Expect = 9e-10
Identities = 31/69 (44%), Positives = 48/69 (69%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+L +LN L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 310 LLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 369
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 370 SKKLKDYLD 378
[37][TOP]
>UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp.
SPB78 RepID=UPI0001B55E40
Length = 201
Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/71 (42%), Positives = 49/71 (69%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
RH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L+
Sbjct: 131 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 190
Query: 386 LVSQGLDAYAD 354
+ L Y D
Sbjct: 191 AFADQLRGYLD 201
[38][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT68_NOCFA
Length = 322
Score = 66.6 bits (161), Expect = 1e-09
Identities = 32/68 (47%), Positives = 49/68 (72%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V +VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+K
Sbjct: 254 VRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRKGER 313
Query: 380 SQGLDAYA 357
+ L AYA
Sbjct: 314 ADRLRAYA 321
[39][TOP]
>UniRef100_O67437 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67437_AQUAE
Length = 310
Score = 66.6 bits (161), Expect = 1e-09
Identities = 32/66 (48%), Positives = 47/66 (71%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ + ++L+KL KER++I LRFG + E ++L EIGEI GLSRER+ QLE RAL +L+
Sbjct: 240 KEIDDLLSKLTDKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRALRKLRSL 299
Query: 386 LVSQGL 369
+ + L
Sbjct: 300 AMKRHL 305
[40][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NG03_ROSCS
Length = 541
Score = 66.6 bits (161), Expect = 1e-09
Identities = 32/69 (46%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L+ +
Sbjct: 473 VEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRL 532
Query: 380 SQGLDAYAD 354
+ L Y +
Sbjct: 533 GKKLRDYLE 541
[41][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UQ16_ROSS1
Length = 541
Score = 66.6 bits (161), Expect = 1e-09
Identities = 32/69 (46%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L+ +
Sbjct: 473 VEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRL 532
Query: 380 SQGLDAYAD 354
+ L Y +
Sbjct: 533 GKKLRDYLE 541
[42][TOP]
>UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B
RepID=C5RE54_CLOCL
Length = 363
Score = 66.6 bits (161), Expect = 1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++NVL+ L P+E +++RLRFG +DG R+L E+G F ++RERI Q+E +AL +L+
Sbjct: 295 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSR 354
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 355 SKKLKDYLD 363
[43][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 66.6 bits (161), Expect = 1e-09
Identities = 29/55 (52%), Positives = 43/55 (78%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +LK+
Sbjct: 263 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQ 317
[44][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 65.9 bits (159), Expect = 2e-09
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A +LK ++
Sbjct: 512 VLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKH 571
Query: 371 LDAY 360
L Y
Sbjct: 572 LQQY 575
[45][TOP]
>UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC
49989 RepID=C7GZY7_9FIRM
Length = 447
Score = 65.9 bits (159), Expect = 2e-09
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+L VLN L +ER +++LRFG DG++R+L E+G+ F ++RERI Q+E++A+ +LK +
Sbjct: 379 LLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLKHPNM 438
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 439 SKKLRDYID 447
[46][TOP]
>UniRef100_C6W8L5 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
RepID=C6W8L5_ACTMD
Length = 349
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/66 (42%), Positives = 47/66 (71%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R + +L+ S+G
Sbjct: 284 VLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVYGVTRERIRQIESRTMAKLQHPARSRG 343
Query: 371 LDAYAD 354
L+ Y D
Sbjct: 344 LEGYLD 349
[47][TOP]
>UniRef100_A8UY45 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
RepID=A8UY45_9AQUI
Length = 309
Score = 65.9 bits (159), Expect = 2e-09
Identities = 30/66 (45%), Positives = 47/66 (71%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ + ++L+KL KERR++ LRFG + E ++L EIG+I G+SRER+ QLE RAL +L+
Sbjct: 239 KEIYDLLDKLPEKERRVVELRFGLKGNEPKTLREIGDILGVSRERVRQLETRALRKLRSL 298
Query: 386 LVSQGL 369
+ + L
Sbjct: 299 AMKRHL 304
[48][TOP]
>UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
M21/2 RepID=A8SFN0_9FIRM
Length = 360
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/72 (44%), Positives = 49/72 (68%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
R +L+VL L P+E R+I LRFG EDG R+L E+G+ F ++RER+ Q+E +AL +L+
Sbjct: 289 RELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKALRKLRHP 348
Query: 386 LVSQGLDAYADK 351
++ L Y D+
Sbjct: 349 SRAKLLRDYLDE 360
[49][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 65.9 bits (159), Expect = 2e-09
Identities = 28/55 (50%), Positives = 43/55 (78%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +L++
Sbjct: 519 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 573
[50][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 65.9 bits (159), Expect = 2e-09
Identities = 32/64 (50%), Positives = 44/64 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VLN L P+E +++R RFG EDG ++L EIGEI G+SRERI Q+E+ A +LK ++
Sbjct: 503 VLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQ 562
Query: 371 LDAY 360
L Y
Sbjct: 563 LKQY 566
[51][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 65.9 bits (159), Expect = 2e-09
Identities = 31/64 (48%), Positives = 45/64 (70%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A +LK ++
Sbjct: 169 VLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKH 228
Query: 371 LDAY 360
L Y
Sbjct: 229 LQQY 232
[52][TOP]
>UniRef100_UPI0001AEE245 RNA polymerase sigma factor n=1 Tax=Streptomyces albus J1074
RepID=UPI0001AEE245
Length = 357
Score = 65.5 bits (158), Expect = 3e-09
Identities = 29/71 (40%), Positives = 50/71 (70%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL++
Sbjct: 287 QHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREH 346
Query: 386 LVSQGLDAYAD 354
+ L Y +
Sbjct: 347 TAAGQLRGYLE 357
[53][TOP]
>UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus
RepID=Q9R5W0_STRGR
Length = 357
Score = 65.5 bits (158), Expect = 3e-09
Identities = 29/71 (40%), Positives = 50/71 (70%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL++
Sbjct: 287 QHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREH 346
Query: 386 LVSQGLDAYAD 354
+ L Y +
Sbjct: 347 TAAGQLRGYLE 357
[54][TOP]
>UniRef100_Q8KUI1 RNA polymerase sigma factor n=1 Tax=Actinosynnema pretiosum subsp.
auranticum RepID=Q8KUI1_ACTPA
Length = 348
Score = 65.5 bits (158), Expect = 3e-09
Identities = 28/66 (42%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R + +L+ S+G
Sbjct: 283 VLETLTPREAGVVRMRYGFPDGVLHTLDEVGRVYGVTRERIRQIESRTMAKLQHPARSRG 342
Query: 371 LDAYAD 354
L+ Y D
Sbjct: 343 LEGYLD 348
[55][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
RepID=C1F1D9_ACIC5
Length = 597
Score = 65.5 bits (158), Expect = 3e-09
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E R+I++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+ S+
Sbjct: 527 VLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRK 586
Query: 371 LDAYAD 354
L A+ D
Sbjct: 587 LRAFVD 592
[56][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H3D6_9FIRM
Length = 359
Score = 65.5 bits (158), Expect = 3e-09
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
R + NVL L P+E R++ LRFG EDG+ R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 288 RELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALRKLR 345
[57][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
RepID=C4RDH0_9ACTO
Length = 334
Score = 65.5 bits (158), Expect = 3e-09
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+ +Q
Sbjct: 269 VLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLRAPERAQR 328
Query: 371 LDAYA 357
L+AYA
Sbjct: 329 LEAYA 333
[58][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
acidaminovorans RepID=B0VJJ6_9BACT
Length = 579
Score = 65.5 bits (158), Expect = 3e-09
Identities = 30/58 (51%), Positives = 43/58 (74%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
+ V VL L P+E R+IRLRFG +DG R+L E+G IF ++RERI Q+E++AL +L+
Sbjct: 504 KQVDEVLKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLR 561
[59][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 65.5 bits (158), Expect = 3e-09
Identities = 28/55 (50%), Positives = 43/55 (78%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +L++
Sbjct: 504 NVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 558
[60][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
RepID=Q3Z904_DEHE1
Length = 520
Score = 65.1 bits (157), Expect = 4e-09
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+
Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514
Query: 371 LDAYAD 354
L Y +
Sbjct: 515 LKDYLE 520
[61][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 65.1 bits (157), Expect = 4e-09
Identities = 30/70 (42%), Positives = 48/70 (68%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ +LN L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+
Sbjct: 289 HLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 348
Query: 383 VSQGLDAYAD 354
S+ L Y +
Sbjct: 349 RSKKLKDYIE 358
[62][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 65.1 bits (157), Expect = 4e-09
Identities = 30/69 (43%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 291 LIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 350
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 351 SKKLKDYLD 359
[63][TOP]
>UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA
Length = 360
Score = 65.1 bits (157), Expect = 4e-09
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = -2
Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369
LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL RL+ V Q L
Sbjct: 296 LNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRL 355
Query: 368 DAYAD 354
+Y D
Sbjct: 356 HSYLD 360
[64][TOP]
>UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205
RepID=A8M7Z0_SALAI
Length = 328
Score = 65.1 bits (157), Expect = 4e-09
Identities = 34/70 (48%), Positives = 46/70 (65%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ V VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+
Sbjct: 258 QEVRGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLRAP 317
Query: 386 LVSQGLDAYA 357
+Q L AYA
Sbjct: 318 ERAQRLAAYA 327
[65][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
RepID=A5FRQ7_DEHSB
Length = 520
Score = 65.1 bits (157), Expect = 4e-09
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+
Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514
Query: 371 LDAYAD 354
L Y +
Sbjct: 515 LKDYLE 520
[66][TOP]
>UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P71106_CHLAU
Length = 346
Score = 65.1 bits (157), Expect = 4e-09
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = -2
Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369
LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL RL+ V Q L
Sbjct: 282 LNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRL 341
Query: 368 DAYAD 354
+Y D
Sbjct: 342 HSYLD 346
[67][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
20544 RepID=C9KNX0_9FIRM
Length = 373
Score = 65.1 bits (157), Expect = 4e-09
Identities = 30/67 (44%), Positives = 48/67 (71%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 307 DVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSR 366
Query: 374 GLDAYAD 354
L + D
Sbjct: 367 KLKDFLD 373
[68][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
RepID=A8CRQ1_9CHLR
Length = 520
Score = 65.1 bits (157), Expect = 4e-09
Identities = 31/66 (46%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+
Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514
Query: 371 LDAYAD 354
L Y +
Sbjct: 515 LKDYLE 520
[69][TOP]
>UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1
Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA
Length = 404
Score = 65.1 bits (157), Expect = 4e-09
Identities = 26/57 (45%), Positives = 45/57 (78%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
+ ++N L P+E+ ++R+R+G +DGE R+L EIG IF ++RER+ Q+E RAL++L++
Sbjct: 324 ISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHKLRQ 380
[70][TOP]
>UniRef100_UPI0001B56202 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C
RepID=UPI0001B56202
Length = 381
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 312 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 371
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 372 FADQLRGYLD 381
[71][TOP]
>UniRef100_UPI0001B51C3A RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes
DSM 40736 RepID=UPI0001B51C3A
Length = 438
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 369 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 428
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 429 FADQLRGYLD 438
[72][TOP]
>UniRef100_UPI0001B4B283 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC
53653 RepID=UPI0001B4B283
Length = 444
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 375 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 434
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 435 FADQLRGYLD 444
[73][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/67 (44%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 301 HVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360
Query: 374 GLDAYAD 354
L + D
Sbjct: 361 RLKDFLD 367
[74][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 64.7 bits (156), Expect = 5e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
+VLN L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 320 SVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373
[75][TOP]
>UniRef100_A8L6K9 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec
RepID=A8L6K9_FRASN
Length = 423
Score = 64.7 bits (156), Expect = 5e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+
Sbjct: 357 NVLGALNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 416
Query: 374 GLDAYAD 354
L + D
Sbjct: 417 RLREFLD 423
[76][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/69 (43%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 290 LVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 349
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 350 SKKLKDYLD 358
[77][TOP]
>UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22
RepID=C9ZAW9_STRSC
Length = 387
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 318 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 377
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 378 FADQLRGYLD 387
[78][TOP]
>UniRef100_C9N712 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Streptomyces flavogriseus ATCC 33331
RepID=C9N712_9ACTO
Length = 358
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 48/70 (68%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 289 HLEVVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLDKLRGHA 348
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 349 FADQLRGYLD 358
[79][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/69 (43%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 290 LVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 349
Query: 380 SQGLDAYAD 354
S+ L Y D
Sbjct: 350 SKKLKDYLD 358
[80][TOP]
>UniRef100_B5HVY1 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
RepID=B5HVY1_9ACTO
Length = 374
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 305 HLEAVLSTLGERERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 364
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 365 FADQLRGYLD 374
[81][TOP]
>UniRef100_B5GQH3 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC
27064 RepID=B5GQH3_STRCL
Length = 385
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 316 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 375
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 376 FADQLRGYLD 385
[82][TOP]
>UniRef100_B4V476 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
RepID=B4V476_9ACTO
Length = 362
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 293 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 352
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 353 FADQLRGYLD 362
[83][TOP]
>UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE
Length = 541
Score = 64.7 bits (156), Expect = 5e-09
Identities = 29/64 (45%), Positives = 45/64 (70%)
Frame = -2
Query: 539 LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAY 360
L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+AL +L+ + +QG Y
Sbjct: 477 LSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFHVY 536
Query: 359 ADKL 348
D L
Sbjct: 537 FDLL 540
[84][TOP]
>UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FJ30_MAIZE
Length = 541
Score = 64.7 bits (156), Expect = 5e-09
Identities = 29/64 (45%), Positives = 45/64 (70%)
Frame = -2
Query: 539 LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAY 360
L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+AL +L+ + +QG Y
Sbjct: 477 LSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFHVY 536
Query: 359 ADKL 348
D L
Sbjct: 537 FDLL 540
[85][TOP]
>UniRef100_P27785 RNA polymerase sigma factor rpoD n=1 Tax=Streptomyces aureofaciens
RepID=RPOD_STRAU
Length = 317
Score = 64.7 bits (156), Expect = 5e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 248 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 307
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 308 FADQLRGYLD 317
[86][TOP]
>UniRef100_UPI0001B4E713 RNA polymerase principal sigma factor n=1 Tax=Streptomyces lividans
TK24 RepID=UPI0001B4E713
Length = 365
Score = 64.3 bits (155), Expect = 6e-09
Identities = 29/71 (40%), Positives = 48/71 (67%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L+
Sbjct: 295 QHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 354
Query: 386 LVSQGLDAYAD 354
+ L Y D
Sbjct: 355 AYADQLRGYLD 365
[87][TOP]
>UniRef100_UPI0001B4E11E RNA polymerase principal sigma factor n=1 Tax=Streptomyces
viridochromogenes DSM 40736 RepID=UPI0001B4E11E
Length = 332
Score = 64.3 bits (155), Expect = 6e-09
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK S
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 326
Query: 374 GLDAYA 357
G DA A
Sbjct: 327 GFDAAA 332
[88][TOP]
>UniRef100_UPI0001AF1456 RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC
14672 RepID=UPI0001AF1456
Length = 430
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 361 HLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 420
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 421 FADQLRGYLD 430
[89][TOP]
>UniRef100_Q82BM5 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
RepID=Q82BM5_STRAW
Length = 389
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/70 (42%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+
Sbjct: 320 HLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 379
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 380 FADQLRGYLD 389
[90][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 302 VLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 361
Query: 371 LDAYAD 354
L Y +
Sbjct: 362 LKDYLE 367
[91][TOP]
>UniRef100_Q0RDY7 RNA polymerase sigma factor n=1 Tax=Frankia alni ACN14a
RepID=Q0RDY7_FRAAA
Length = 373
Score = 64.3 bits (155), Expect = 6e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+
Sbjct: 307 NVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 366
Query: 374 GLDAYAD 354
L + D
Sbjct: 367 RLREFLD 373
[92][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
Length = 432
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +L+ S+
Sbjct: 362 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421
Query: 374 GLDAYADK 351
L + D+
Sbjct: 422 QLKDFMDE 429
[93][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9KZ85_THERP
Length = 369
Score = 64.3 bits (155), Expect = 6e-09
Identities = 32/65 (49%), Positives = 46/65 (70%)
Frame = -2
Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369
L++L +ERRII LR+G EDG+ R+L E+G FG++RERI Q+E +AL +L+ S+ L
Sbjct: 305 LSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPSCSRFL 364
Query: 368 DAYAD 354
Y D
Sbjct: 365 RGYLD 369
[94][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 307 VLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 366
Query: 371 LDAYAD 354
L Y +
Sbjct: 367 LKDYLE 372
[95][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 310 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363
[96][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
[97][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
[98][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/56 (50%), Positives = 45/56 (80%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
V VL++L +E+R+++LRFG EDG +R+L E+G+ FG++RERI Q+E +AL +L+
Sbjct: 332 VAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLR 387
[99][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 64.3 bits (155), Expect = 6e-09
Identities = 31/70 (44%), Positives = 50/70 (71%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
RHVL L++ +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+
Sbjct: 252 RHVLATLDE---REQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308
Query: 386 LVSQGLDAYA 357
+ L +YA
Sbjct: 309 ERADRLRSYA 318
[100][TOP]
>UniRef100_Q8GGT8 RNA polymerase sigma factor n=1 Tax=Frankia sp. ACN14a
RepID=Q8GGT8_9ACTO
Length = 385
Score = 64.3 bits (155), Expect = 6e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+
Sbjct: 319 NVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 378
Query: 374 GLDAYAD 354
L + D
Sbjct: 379 RLREFLD 385
[101][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 348 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 401
[102][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 313 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366
[103][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
Length = 432
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/68 (44%), Positives = 47/68 (69%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +L+ S+
Sbjct: 362 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421
Query: 374 GLDAYADK 351
L + D+
Sbjct: 422 QLKDFMDE 429
[104][TOP]
>UniRef100_B5HKY0 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
RepID=B5HKY0_9ACTO
Length = 332
Score = 64.3 bits (155), Expect = 6e-09
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK S
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 326
Query: 374 GLDAYA 357
G DA A
Sbjct: 327 GFDAAA 332
[105][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 311 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 364
[106][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
[107][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
[108][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
[109][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 64.3 bits (155), Expect = 6e-09
Identities = 25/55 (45%), Positives = 44/55 (80%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A+ +L++
Sbjct: 359 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 413
[110][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 64.3 bits (155), Expect = 6e-09
Identities = 25/55 (45%), Positives = 44/55 (80%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A+ +L++
Sbjct: 376 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430
[111][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 64.3 bits (155), Expect = 6e-09
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+ER ++RLRFG +DG ++L EIG+IF ++RERI Q+E +A+ +L++ +
Sbjct: 508 VLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSI 567
Query: 371 LDAYAD 354
L Y D
Sbjct: 568 LREYLD 573
[112][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 64.3 bits (155), Expect = 6e-09
Identities = 25/55 (45%), Positives = 44/55 (80%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A+ +L++
Sbjct: 376 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430
[113][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 359 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412
[114][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 64.3 bits (155), Expect = 6e-09
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403
[115][TOP]
>UniRef100_P18182 RNA polymerase principal sigma factor hrdA n=1 Tax=Streptomyces
coelicolor RepID=HRDA_STRCO
Length = 396
Score = 64.3 bits (155), Expect = 6e-09
Identities = 29/71 (40%), Positives = 48/71 (67%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L+
Sbjct: 326 QHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 385
Query: 386 LVSQGLDAYAD 354
+ L Y D
Sbjct: 386 AYADQLRGYLD 396
[116][TOP]
>UniRef100_UPI0001B5772B RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces sp.
C RepID=UPI0001B5772B
Length = 325
Score = 63.9 bits (154), Expect = 8e-09
Identities = 31/66 (46%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
++L KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+
Sbjct: 260 DLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT 319
Query: 374 GLDAYA 357
G DA A
Sbjct: 320 GFDAVA 325
[117][TOP]
>UniRef100_Q2J784 RNA polymerase sigma factor n=1 Tax=Frankia sp. CcI3
RepID=Q2J784_FRASC
Length = 422
Score = 63.9 bits (154), Expect = 8e-09
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+
Sbjct: 356 NVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 415
Query: 374 GLDAYAD 354
L + D
Sbjct: 416 RLREFLD 422
[118][TOP]
>UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G4K7_CHLAD
Length = 345
Score = 63.9 bits (154), Expect = 8e-09
Identities = 32/71 (45%), Positives = 44/71 (61%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
R + LN+L +ERRII LR+G DG R+L E+G + G++RER Q+E AL RL+
Sbjct: 275 RDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEALRRLRSP 334
Query: 386 LVSQGLDAYAD 354
+ Q L Y D
Sbjct: 335 EIGQHLRDYLD 345
[119][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZW2_NOSP7
Length = 332
Score = 63.9 bits (154), Expect = 8e-09
Identities = 28/59 (47%), Positives = 45/59 (76%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
+++ N+L+KL P++R+I+ RFG DG E SL+EIG+ G+SRER+ Q+E +AL L++
Sbjct: 263 QNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRR 321
[120][TOP]
>UniRef100_Q59815 RNA polymerase sigma factor n=1 Tax=Streptomyces aureofaciens
RepID=Q59815_STRAU
Length = 325
Score = 63.9 bits (154), Expect = 8e-09
Identities = 31/66 (46%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
++L KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+
Sbjct: 260 DLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT 319
Query: 374 GLDAYA 357
G DA A
Sbjct: 320 GFDAVA 325
[121][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 63.9 bits (154), Expect = 8e-09
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Frame = -2
Query: 566 RHVLN-VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
R LN VL L P+E++++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L+
Sbjct: 298 REQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 357
Query: 389 CLVSQGLDAYAD 354
S+ L Y +
Sbjct: 358 PSRSKKLKDYLE 369
[122][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367
[123][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 315 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 368
[124][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 63.9 bits (154), Expect = 8e-09
Identities = 30/67 (44%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 312 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 371
Query: 374 GLDAYAD 354
L + D
Sbjct: 372 QLRDFLD 378
[125][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367
[126][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367
[127][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
RepID=A5VJI3_LACRD
Length = 380
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367
[128][TOP]
>UniRef100_B4VDF5 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
RepID=B4VDF5_9ACTO
Length = 325
Score = 63.9 bits (154), Expect = 8e-09
Identities = 31/66 (46%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
++L KL + II++R+G +DG ER+L+E+G+ GL+RERI Q+E AL LKK
Sbjct: 260 DLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDT 319
Query: 374 GLDAYA 357
G DA A
Sbjct: 320 GFDAVA 325
[129][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
RepID=B3XRX4_LACRE
Length = 380
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367
[130][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 63.9 bits (154), Expect = 8e-09
Identities = 27/53 (50%), Positives = 41/53 (77%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+
Sbjct: 303 VLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLR 355
[131][TOP]
>UniRef100_UPI0001B4B7AF RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus
Tu4000 RepID=UPI0001B4B7AF
Length = 412
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/70 (41%), Positives = 47/70 (67%)
Frame = -2
Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L+
Sbjct: 343 HLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHA 402
Query: 383 VSQGLDAYAD 354
+ L Y D
Sbjct: 403 FADQLRGYLD 412
[132][TOP]
>UniRef100_UPI0000DAED90 hypothetical protein Wendoof_01000264 n=1 Tax=Wolbachia
endosymbiont of Drosophila willistoni TSC#14030-0811.24
RepID=UPI0000DAED90
Length = 502
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 436 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 490
[133][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
tengcongensis RepID=Q8R970_THETN
Length = 372
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 304 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 363
Query: 380 SQGLDAYAD 354
S+ L + D
Sbjct: 364 SKKLKDFLD 372
[134][TOP]
>UniRef100_Q73FM9 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
Drosophila melanogaster RepID=Q73FM9_WOLPM
Length = 642
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 576 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 630
[135][TOP]
>UniRef100_C0R506 RNA polymerase sigma factor n=2 Tax=Wolbachia RepID=C0R506_WOLWR
Length = 650
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 584 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 638
[136][TOP]
>UniRef100_B3CMQ1 RNA polymerase sigma factor n=2 Tax=Wolbachia endosymbiont of Culex
quinquefasciatus RepID=B3CMQ1_WOLPP
Length = 633
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 567 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 621
[137][TOP]
>UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20
RepID=B1MYH4_LEUCK
Length = 432
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/67 (44%), Positives = 45/67 (67%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +L+ S+
Sbjct: 362 SVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421
Query: 374 GLDAYAD 354
L + D
Sbjct: 422 QLKDFMD 428
[138][TOP]
>UniRef100_Q4ECZ2 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
Drosophila ananassae RepID=Q4ECZ2_9RICK
Length = 270
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 204 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 258
[139][TOP]
>UniRef100_Q4E857 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
Drosophila simulans RepID=Q4E857_9RICK
Length = 183
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 117 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 171
[140][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
Length = 357
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348
Query: 380 SQGLDAYAD 354
S+ L + D
Sbjct: 349 SKKLKDFLD 357
[141][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PMA8_9THEO
Length = 357
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348
Query: 380 SQGLDAYAD 354
S+ L + D
Sbjct: 349 SKKLKDFLD 357
[142][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
Length = 357
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 289 LIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348
Query: 380 SQGLDAYAD 354
S+ L + D
Sbjct: 349 SKKLKDFLD 357
[143][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
RepID=B0K6Y0_THEPX
Length = 357
Score = 63.5 bits (153), Expect = 1e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
+++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348
Query: 380 SQGLDAYAD 354
S+ L + D
Sbjct: 349 SKKLKDFLD 357
[144][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APA0_TSUPA
Length = 330
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L+
Sbjct: 262 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGER 321
Query: 380 SQGLDAYA 357
+ L AYA
Sbjct: 322 ADRLRAYA 329
[145][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
RepID=B2GBZ9_LACF3
Length = 380
Score = 63.5 bits (153), Expect = 1e-08
Identities = 27/54 (50%), Positives = 41/54 (75%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL+ L +E ++RLRFG +DG R+L E+G +FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLR 367
[146][TOP]
>UniRef100_C0F9L6 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
Muscidifurax uniraptor RepID=C0F9L6_9RICK
Length = 669
Score = 63.5 bits (153), Expect = 1e-08
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 603 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 657
[147][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
RepID=A7VZA6_9CLOT
Length = 365
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+
Sbjct: 300 VLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKK 359
Query: 371 LDAYAD 354
L + D
Sbjct: 360 LKDFLD 365
[148][TOP]
>UniRef100_A7B7L9 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7B7L9_RUMGN
Length = 297
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/57 (52%), Positives = 43/57 (75%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
V +L+ L KE++I+RLR+G EDG +L E G+I G++RERI QLE+RAL +L+K
Sbjct: 235 VQEMLSTLTEKEQKILRLRYGLEDGNVHTLEETGQILGVTRERIRQLESRALEKLRK 291
[149][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 63.2 bits (152), Expect = 1e-08
Identities = 27/53 (50%), Positives = 41/53 (77%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 251 VLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLR 303
[150][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 314 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373
Query: 374 GLDAYAD 354
L + D
Sbjct: 374 RLKDFLD 380
[151][TOP]
>UniRef100_Q82H52 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
RepID=Q82H52_STRAW
Length = 331
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L + II++R+G +DG ER+L+E+G+ GL+RERI Q+E AL LKK S
Sbjct: 266 DLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 325
Query: 374 GLDAYA 357
G DA A
Sbjct: 326 GFDAAA 331
[152][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 63.2 bits (152), Expect = 1e-08
Identities = 27/53 (50%), Positives = 42/53 (79%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
VLN L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +AL +L+
Sbjct: 335 VLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 387
[153][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 307 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366
Query: 374 GLDAYAD 354
L + D
Sbjct: 367 RLKDFLD 373
[154][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[155][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[156][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 63.2 bits (152), Expect = 1e-08
Identities = 27/53 (50%), Positives = 42/53 (79%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
VL L +E++++RLRFG +DG R+L E+G+IFG++RERI Q+E +AL +L+
Sbjct: 305 VLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357
[157][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 298 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 357
Query: 374 GLDAYAD 354
L + D
Sbjct: 358 RLKDFLD 364
[158][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 300 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 359
Query: 374 GLDAYAD 354
L + D
Sbjct: 360 RLKDFMD 366
[159][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 303 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 362
Query: 374 GLDAYAD 354
L + D
Sbjct: 363 RLKDFMD 369
[160][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
RepID=B8E0E4_DICTD
Length = 413
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/71 (40%), Positives = 49/71 (69%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ + +LN+L +ER I++LRFG ED + R+L E+G++F ++RERI Q+E +AL RL+
Sbjct: 342 KDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHP 401
Query: 386 LVSQGLDAYAD 354
S+ + Y +
Sbjct: 402 SRSKKIKDYLE 412
[161][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
H-6-12 RepID=B5YES0_DICT6
Length = 413
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/71 (40%), Positives = 49/71 (69%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+ + +LN+L +ER I++LRFG ED + R+L E+G++F ++RERI Q+E +AL RL+
Sbjct: 342 KDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHP 401
Query: 386 LVSQGLDAYAD 354
S+ + Y +
Sbjct: 402 SRSKKIKDYLE 412
[162][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 295 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 354
Query: 374 GLDAYAD 354
L + D
Sbjct: 355 RLKDFLD 361
[163][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L+ S+
Sbjct: 294 DVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLRHPSRSK 353
Query: 374 GLDAYAD 354
L Y D
Sbjct: 354 KLKDYLD 360
[164][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NGG2_ROSCS
Length = 405
Score = 63.2 bits (152), Expect = 1e-08
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+ L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L +L+ +
Sbjct: 339 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 398
Query: 374 GLDAYAD 354
GL Y +
Sbjct: 399 GLRGYLE 405
[165][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 304 LIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSR 363
Query: 380 SQGLDAYAD 354
S+ L Y +
Sbjct: 364 SKKLKDYLE 372
[166][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5V244_ROSS1
Length = 401
Score = 63.2 bits (152), Expect = 1e-08
Identities = 31/67 (46%), Positives = 44/67 (65%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+ L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L +L+ +
Sbjct: 335 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 394
Query: 374 GLDAYAD 354
GL Y +
Sbjct: 395 GLRGYLE 401
[167][TOP]
>UniRef100_Q8VM94 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians
RepID=Q8VM94_RHOFA
Length = 323
Score = 63.2 bits (152), Expect = 1e-08
Identities = 28/65 (43%), Positives = 48/65 (73%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L++ ++
Sbjct: 258 VLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQGDRAEK 317
Query: 371 LDAYA 357
L +YA
Sbjct: 318 LRSYA 322
[168][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
RepID=P77870_HELMO
Length = 333
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 268 VLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 327
Query: 371 LDAYAD 354
L Y D
Sbjct: 328 LKDYVD 333
[169][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[170][TOP]
>UniRef100_C9YWE0 Sigma factor HrdD n=1 Tax=Streptomyces scabiei 87.22
RepID=C9YWE0_STRSC
Length = 332
Score = 63.2 bits (152), Expect = 1e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326
Query: 374 GLDAYA 357
G DA A
Sbjct: 327 GFDAVA 332
[171][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[172][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[173][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 276 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 335
Query: 374 GLDAYAD 354
L + D
Sbjct: 336 RLKDFMD 342
[174][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[175][TOP]
>UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
prausnitzii A2-165 RepID=C7H329_9FIRM
Length = 461
Score = 63.2 bits (152), Expect = 1e-08
Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL--K 393
+ + L L P+E ++IRLRFG +DG R+L E+G FG++RER+ Q+E +A+ +L +
Sbjct: 391 QQINQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSR 450
Query: 392 KCL 384
KCL
Sbjct: 451 KCL 453
[176][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[177][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[178][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 301 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360
Query: 374 GLDAYAD 354
L + D
Sbjct: 361 RLKDFMD 367
[179][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[180][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[181][TOP]
>UniRef100_A8VUB1 RNA polymerase sigma factor n=1 Tax=Bacillus selenitireducens MLS10
RepID=A8VUB1_9BACI
Length = 73
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 7 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 66
Query: 374 GLDAYAD 354
L + D
Sbjct: 67 RLKDFLD 73
[182][TOP]
>UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZN70_NODSP
Length = 327
Score = 63.2 bits (152), Expect = 1e-08
Identities = 28/55 (50%), Positives = 43/55 (78%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
N+L +L P++R+++ LRFG EDG E SL+++GE LSRER+ QLE++AL L++
Sbjct: 262 NLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316
[183][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[184][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[185][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361
Query: 374 GLDAYAD 354
L + D
Sbjct: 362 RLKDFMD 368
[186][TOP]
>UniRef100_P18249 RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces
coelicolor RepID=HRDD_STRCO
Length = 332
Score = 63.2 bits (152), Expect = 1e-08
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L P+ II++R+G +DG ER+L+E+G+ GL+RERI Q+E AL LKK
Sbjct: 267 DLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326
Query: 374 GLDAYA 357
G +A A
Sbjct: 327 GFEAAA 332
[187][TOP]
>UniRef100_UPI0001B51744 RNA polymerase principal sigma factor n=1 Tax=Streptomyces
griseoflavus Tu4000 RepID=UPI0001B51744
Length = 332
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326
Query: 374 GLDAYA 357
G DA A
Sbjct: 327 GFDAAA 332
[188][TOP]
>UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN
605 RepID=UPI0001B44D01
Length = 377
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 311 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 370
Query: 374 GLDAYAD 354
L Y D
Sbjct: 371 VLRDYLD 377
[189][TOP]
>UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC
12478 RepID=UPI0001AF41EF
Length = 518
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 452 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 511
Query: 374 GLDAYAD 354
L Y D
Sbjct: 512 VLRDYLD 518
[190][TOP]
>UniRef100_UPI0001AF13A7 RNA polymerase principal sigma factor n=1 Tax=Streptomyces
ghanaensis ATCC 14672 RepID=UPI0001AF13A7
Length = 332
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326
Query: 374 GLDAYA 357
G DA A
Sbjct: 327 GFDAAA 332
[191][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/67 (44%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+
Sbjct: 298 DVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSK 357
Query: 374 GLDAYAD 354
L + D
Sbjct: 358 KLRDFLD 364
[192][TOP]
>UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17
RepID=UPI000190610E
Length = 530
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 464 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 523
Query: 374 GLDAYAD 354
L Y D
Sbjct: 524 VLRDYLD 530
[193][TOP]
>UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
02_1987 RepID=UPI00019014BB
Length = 197
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 131 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 190
Query: 374 GLDAYAD 354
L Y D
Sbjct: 191 VLRDYLD 197
[194][TOP]
>UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
RepID=Q0S1K1_RHOSR
Length = 323
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/68 (42%), Positives = 50/68 (73%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L++
Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314
Query: 380 SQGLDAYA 357
++ L +YA
Sbjct: 315 AERLRSYA 322
[195][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/66 (43%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+
Sbjct: 314 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 373
Query: 371 LDAYAD 354
L + D
Sbjct: 374 LKDFLD 379
[196][TOP]
>UniRef100_Q02AB6 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus
Ellin6076 RepID=Q02AB6_SOLUE
Length = 563
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E +II++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+ S
Sbjct: 492 VLKTLTPREEKIIKMRFGLEDGSEHTLEEVGQNFAVTRERIRQIEAKALRKLRHPSRSHR 551
Query: 371 LDAYAD 354
L A+ +
Sbjct: 552 LRAFLE 557
[197][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
RepID=B8CXH1_HALOH
Length = 358
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/67 (44%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E+R++ LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 292 DVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSK 351
Query: 374 GLDAYAD 354
L Y +
Sbjct: 352 KLKDYLE 358
[198][TOP]
>UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J7M4_NOSP7
Length = 327
Score = 62.8 bits (151), Expect = 2e-08
Identities = 28/55 (50%), Positives = 42/55 (76%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
N+L +L P++R ++ LRFG EDG E SL+++GE LSRER+ QLE++AL L++
Sbjct: 262 NLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316
[199][TOP]
>UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLZ7_MYCMM
Length = 501
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494
Query: 374 GLDAYAD 354
L Y D
Sbjct: 495 VLRDYLD 501
[200][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 306 VLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 365
Query: 371 LDAYAD 354
L Y D
Sbjct: 366 LKDYLD 371
[201][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/69 (42%), Positives = 49/69 (71%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 304 LVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSR 363
Query: 380 SQGLDAYAD 354
S+ L Y +
Sbjct: 364 SKKLKDYLE 372
[202][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L+ S+
Sbjct: 298 VLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKK 357
Query: 371 LDAYAD 354
L Y D
Sbjct: 358 LKDYLD 363
[203][TOP]
>UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
RepID=A0PT58_MYCUA
Length = 501
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494
Query: 374 GLDAYAD 354
L Y D
Sbjct: 495 VLRDYLD 501
[204][TOP]
>UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis
RepID=Q60158_MYCBO
Length = 528
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521
Query: 374 GLDAYAD 354
L Y D
Sbjct: 522 VLRDYLD 528
[205][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E R++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+
Sbjct: 310 VLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRK 369
Query: 371 LDAYAD 354
L + D
Sbjct: 370 LKDFLD 375
[206][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 62.8 bits (151), Expect = 2e-08
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +LK S+
Sbjct: 392 VLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKR 451
Query: 371 LDAYADK 351
L + DK
Sbjct: 452 LRDFVDK 458
[207][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
49176 RepID=C4FZZ1_ABIDE
Length = 372
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 47/66 (71%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E R+I+LRFG EDG R+L E+G+ F ++RERI Q+E++AL +L++ S+
Sbjct: 307 VLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQPSRSRK 366
Query: 371 LDAYAD 354
L Y +
Sbjct: 367 LKDYLE 372
[208][TOP]
>UniRef100_C2APF0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APF0_TSUPA
Length = 483
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 417 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 476
Query: 374 GLDAYAD 354
L Y D
Sbjct: 477 VLRDYLD 483
[209][TOP]
>UniRef100_C1ZIG8 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
3776 RepID=C1ZIG8_PLALI
Length = 290
Score = 62.8 bits (151), Expect = 2e-08
Identities = 28/64 (43%), Positives = 45/64 (70%)
Frame = -2
Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
+HV +L + +E +I+RLRFG +D E ++L EIGE GL+RER+ Q+E+ AL R+ K
Sbjct: 227 KHVYAMLETMDEREAKILRLRFGLDDSEPKTLKEIGEEMGLTRERVRQIESEALKRIAKR 286
Query: 386 LVSQ 375
++ +
Sbjct: 287 ILGE 290
[210][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
17241 RepID=B0PFC0_9FIRM
Length = 361
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+E +++RLRFG EDG R+L E+G F ++RERI Q+E +AL +L+ S+
Sbjct: 296 VLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKK 355
Query: 371 LDAYAD 354
L + D
Sbjct: 356 LKDFLD 361
[211][TOP]
>UniRef100_A8S616 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
M21/2 RepID=A8S616_9FIRM
Length = 457
Score = 62.8 bits (151), Expect = 2e-08
Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Frame = -2
Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL--KKCL 384
L L P+E ++IRLRFG +DG R+L E+G FG++RER+ Q+E +A+ +L +KCL
Sbjct: 393 LKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSRKCL 449
[212][TOP]
>UniRef100_A2VL47 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis C
RepID=A2VL47_MYCTU
Length = 528
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521
Query: 374 GLDAYAD 354
L Y D
Sbjct: 522 VLRDYLD 528
[213][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/66 (43%), Positives = 47/66 (71%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A+ +L++ +Q
Sbjct: 429 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 488
Query: 371 LDAYAD 354
L Y D
Sbjct: 489 LKHYLD 494
[214][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/66 (43%), Positives = 47/66 (71%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A+ +L++ +Q
Sbjct: 526 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 585
Query: 371 LDAYAD 354
L Y D
Sbjct: 586 LKHYLD 591
[215][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 62.8 bits (151), Expect = 2e-08
Identities = 30/66 (45%), Positives = 46/66 (69%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+ER ++RLRFG +DG+ R+L EIG +F ++RERI Q+E +A+ +L++ +
Sbjct: 522 VLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGV 581
Query: 371 LDAYAD 354
L Y D
Sbjct: 582 LREYLD 587
[216][TOP]
>UniRef100_P0A603 RNA polymerase sigma factor rpoD n=7 Tax=Mycobacterium tuberculosis
complex RepID=RPOD_MYCBO
Length = 528
Score = 62.8 bits (151), Expect = 2e-08
Identities = 29/67 (43%), Positives = 47/67 (70%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521
Query: 374 GLDAYAD 354
L Y D
Sbjct: 522 VLRDYLD 528
[217][TOP]
>UniRef100_UPI0001B58588 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4
RepID=UPI0001B58588
Length = 476
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 410 SVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 469
Query: 374 GLDAYAD 354
L Y D
Sbjct: 470 VLRDYLD 476
[218][TOP]
>UniRef100_UPI0001B45B4B RNA polymerase sigma factor n=1 Tax=Mycobacterium intracellulare
ATCC 13950 RepID=UPI0001B45B4B
Length = 488
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 422 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 481
Query: 374 GLDAYAD 354
L Y D
Sbjct: 482 VLRDYLD 488
[219][TOP]
>UniRef100_UPI0001AEFC8C RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces
roseosporus NRRL 11379 RepID=UPI0001AEFC8C
Length = 308
Score = 62.4 bits (150), Expect = 2e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+
Sbjct: 243 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 302
Query: 374 GLDAYA 357
G DA A
Sbjct: 303 GFDAAA 308
[220][TOP]
>UniRef100_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C4C50
Length = 521
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L P+ER +I LRFG +DG ++L E+ + +G++RERI Q+E R L +L++ S
Sbjct: 452 VLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQPTRSCR 511
Query: 371 LDAYAD 354
L+ +AD
Sbjct: 512 LEEFAD 517
[221][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 62.4 bits (150), Expect = 2e-08
Identities = 27/53 (50%), Positives = 42/53 (79%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 324 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376
[222][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NKZ2_GLOVI
Length = 350
Score = 62.4 bits (150), Expect = 2e-08
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
++L L P+ER ++RLR+G DG R+L E+G+ FGL+RERI Q+E RAL +L+
Sbjct: 279 SLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARALRKLR 332
[223][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 366
Query: 371 LDAYAD 354
L + D
Sbjct: 367 LKDFLD 372
[224][TOP]
>UniRef100_Q73W40 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium subsp.
paratuberculosis RepID=Q73W40_MYCPA
Length = 509
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 443 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 502
Query: 374 GLDAYAD 354
L Y D
Sbjct: 503 VLRDYLD 509
[225][TOP]
>UniRef100_Q5YT84 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT84_NOCFA
Length = 454
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 388 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 447
Query: 374 GLDAYAD 354
L Y D
Sbjct: 448 VLRDYLD 454
[226][TOP]
>UniRef100_Q2JLG8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JLG8_SYNJB
Length = 320
Score = 62.4 bits (150), Expect = 2e-08
Identities = 26/53 (49%), Positives = 43/53 (81%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
+L +L P+E+ I++LR+G +DG +LSEIG++FGLSRER+ Q++ RA+ +L+
Sbjct: 253 MLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLR 305
[227][TOP]
>UniRef100_Q0S1J1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
RepID=Q0S1J1_RHOSR
Length = 457
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 391 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 450
Query: 374 GLDAYAD 354
L Y D
Sbjct: 451 VLRDYLD 457
[228][TOP]
>UniRef100_C0ZYT9 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis PR4
RepID=C0ZYT9_RHOE4
Length = 452
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 386 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 445
Query: 374 GLDAYAD 354
L Y D
Sbjct: 446 VLRDYLD 452
[229][TOP]
>UniRef100_B8ZQV8 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV8_MYCLB
Length = 574
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 508 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 567
Query: 374 GLDAYAD 354
L Y D
Sbjct: 568 VLRDYLD 574
[230][TOP]
>UniRef100_B1VTL5 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
griseus NBRC 13350 RepID=B1VTL5_STRGG
Length = 333
Score = 62.4 bits (150), Expect = 2e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+
Sbjct: 268 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 327
Query: 374 GLDAYA 357
G DA A
Sbjct: 328 GFDAAA 333
[231][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCY5_MYCA9
Length = 323
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/68 (42%), Positives = 49/68 (72%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L+
Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDR 314
Query: 380 SQGLDAYA 357
++ L +YA
Sbjct: 315 AERLRSYA 322
[232][TOP]
>UniRef100_B1MCW6 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCW6_MYCA9
Length = 467
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 401 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 460
Query: 374 GLDAYAD 354
L Y D
Sbjct: 461 VLRDYLD 467
[233][TOP]
>UniRef100_A4TCR0 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCR0_MYCGI
Length = 488
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 422 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 481
Query: 374 GLDAYAD 354
L Y D
Sbjct: 482 VLRDYLD 488
[234][TOP]
>UniRef100_A3PYI3 RNA polymerase sigma factor n=1 Tax=Mycobacterium sp. JLS
RepID=A3PYI3_MYCSJ
Length = 480
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 414 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 473
Query: 374 GLDAYAD 354
L Y D
Sbjct: 474 VLRDYLD 480
[235][TOP]
>UniRef100_A1UF21 RNA polymerase sigma factor n=2 Tax=Mycobacterium
RepID=A1UF21_MYCSK
Length = 480
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 414 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 473
Query: 374 GLDAYAD 354
L Y D
Sbjct: 474 VLRDYLD 480
[236][TOP]
>UniRef100_A1T7X4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7X4_MYCVP
Length = 478
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 412 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 471
Query: 374 GLDAYAD 354
L Y D
Sbjct: 472 VLRDYLD 478
[237][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+ +
Sbjct: 264 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 323
Query: 371 LDAYA 357
L +YA
Sbjct: 324 LRSYA 328
[238][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/65 (44%), Positives = 46/65 (70%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+ +
Sbjct: 254 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 313
Query: 371 LDAYA 357
L +YA
Sbjct: 314 LRSYA 318
[239][TOP]
>UniRef100_A0QIN4 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium 104
RepID=A0QIN4_MYCA1
Length = 496
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 430 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 489
Query: 374 GLDAYAD 354
L Y D
Sbjct: 490 VLRDYLD 496
[240][TOP]
>UniRef100_Q9S5K3 RNA polymerase sigma factor n=1 Tax=Mycobacterium leprae
RepID=Q9S5K3_MYCLE
Length = 576
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 510 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 569
Query: 374 GLDAYAD 354
L Y D
Sbjct: 570 VLRDYLD 576
[241][TOP]
>UniRef100_Q8VM92 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians
RepID=Q8VM92_RHOFA
Length = 474
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 408 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 467
Query: 374 GLDAYAD 354
L Y D
Sbjct: 468 VLRDYLD 474
[242][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 62.4 bits (150), Expect = 2e-08
Identities = 27/53 (50%), Positives = 40/53 (75%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
VL L +E ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL +L+
Sbjct: 399 VLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLR 451
[243][TOP]
>UniRef100_A0QW02 RNA polymerase sigma factor n=2 Tax=Mycobacterium smegmatis
RepID=A0QW02_MYCS2
Length = 466
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 400 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 459
Query: 374 GLDAYAD 354
L Y D
Sbjct: 460 VLRDYLD 466
[244][TOP]
>UniRef100_C9N6U7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Streptomyces flavogriseus ATCC 33331
RepID=C9N6U7_9ACTO
Length = 333
Score = 62.4 bits (150), Expect = 2e-08
Identities = 30/66 (45%), Positives = 44/66 (66%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+++ KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+
Sbjct: 268 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 327
Query: 374 GLDAYA 357
G DA A
Sbjct: 328 GFDAAA 333
[245][TOP]
>UniRef100_C7MYK8 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Saccharomonospora
viridis DSM 43017 RepID=C7MYK8_SACVD
Length = 439
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 373 SVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 432
Query: 374 GLDAYAD 354
L Y D
Sbjct: 433 VLRDYLD 439
[246][TOP]
>UniRef100_C1B3C8 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus
RepID=C1B3C8_RHOOB
Length = 323
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/68 (42%), Positives = 49/68 (72%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L++
Sbjct: 255 VRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314
Query: 380 SQGLDAYA 357
++ L +YA
Sbjct: 315 AERLRSYA 322
[247][TOP]
>UniRef100_C1B466 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus
RepID=C1B466_RHOOB
Length = 457
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 391 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 450
Query: 374 GLDAYAD 354
L Y D
Sbjct: 451 VLRDYLD 457
[248][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/66 (43%), Positives = 45/66 (68%)
Frame = -2
Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S
Sbjct: 299 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 358
Query: 371 LDAYAD 354
L + D
Sbjct: 359 LKDFLD 364
[249][TOP]
>UniRef100_C3JLL5 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis SK121
RepID=C3JLL5_RHOER
Length = 430
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/67 (43%), Positives = 46/67 (68%)
Frame = -2
Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
+VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ
Sbjct: 364 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 423
Query: 374 GLDAYAD 354
L Y D
Sbjct: 424 VLRDYLD 430
[250][TOP]
>UniRef100_C0ZYS7 RNA polymerase sigma factor n=2 Tax=Rhodococcus erythropolis
RepID=C0ZYS7_RHOE4
Length = 323
Score = 62.4 bits (150), Expect = 2e-08
Identities = 29/68 (42%), Positives = 49/68 (72%)
Frame = -2
Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L+
Sbjct: 255 VRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRVGDR 314
Query: 380 SQGLDAYA 357
++ L +YA
Sbjct: 315 AEKLRSYA 322