BB909574 ( RCE08414 )

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[1][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
           RepID=B9S0J0_RICCO
          Length = 548

 Score =  108 bits (271), Expect = 2e-22
 Identities = 49/74 (66%), Positives = 66/74 (89%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +HVL++LN L P+ER+IIRLR+G EDG+++SLSEIG +FGLS+ER+ QLE+RALY+LK+C
Sbjct: 475 KHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQC 534

Query: 386 LVSQGLDAYADKLI 345
           L S GL+AYAD L+
Sbjct: 535 LASHGLEAYADLLV 548

[2][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
          Length = 535

 Score =  103 bits (257), Expect = 9e-21
 Identities = 49/73 (67%), Positives = 62/73 (84%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +H+  +LN L  KERRIIRLRFG EDG+++SLSEIG +FGLS+ER+ QLE+RALY+LK+C
Sbjct: 462 KHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQC 521

Query: 386 LVSQGLDAYADKL 348
           + S GLDAYAD L
Sbjct: 522 VGSHGLDAYADLL 534

[3][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
           Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
          Length = 487

 Score =  102 bits (254), Expect = 2e-20
 Identities = 50/73 (68%), Positives = 62/73 (84%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RALYRLK+ +
Sbjct: 415 HVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 474

Query: 383 VSQGLDAYADKLI 345
            S GL AYAD L+
Sbjct: 475 NSHGLHAYADLLV 487

[4][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
           RepID=Q9LD95_ARATH
          Length = 547

 Score =  102 bits (254), Expect = 2e-20
 Identities = 50/73 (68%), Positives = 62/73 (84%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RALYRLK+ +
Sbjct: 475 HVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 534

Query: 383 VSQGLDAYADKLI 345
            S GL AYAD L+
Sbjct: 535 NSHGLHAYADLLV 547

[5][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001983B83
          Length = 561

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 46/74 (62%), Positives = 59/74 (79%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +HV N+L+ L PKERRIIRLRFG  DG  R+LSEIG +FG S+ER+ QLE RAL++LK+C
Sbjct: 488 QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 547

Query: 386 LVSQGLDAYADKLI 345
           L S GL++Y D L+
Sbjct: 548 LSSHGLESYTDLLV 561

[6][TOP]
>UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PT61_VITVI
          Length = 284

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 46/74 (62%), Positives = 59/74 (79%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +HV N+L+ L PKERRIIRLRFG  DG  R+LSEIG +FG S+ER+ QLE RAL++LK+C
Sbjct: 211 QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 270

Query: 386 LVSQGLDAYADKLI 345
           L S GL++Y D L+
Sbjct: 271 LSSHGLESYTDLLV 284

[7][TOP]
>UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q84LK8_ORYSJ
          Length = 572

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 37/73 (50%), Positives = 49/73 (67%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + V + L  L P+E+ II  RFG  DGE ++L  IG++FGLS+ERI QL+NRAL +LK+ 
Sbjct: 499 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 558

Query: 386 LVSQGLDAYADKL 348
              QG D Y D L
Sbjct: 559 ASLQGFDVYFDLL 571

[8][TOP]
>UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=B8BC85_ORYSI
          Length = 537

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 37/73 (50%), Positives = 49/73 (67%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + V + L  L P+E+ II  RFG  DGE ++L  IG++FGLS+ERI QL+NRAL +LK+ 
Sbjct: 464 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 523

Query: 386 LVSQGLDAYADKL 348
              QG D Y D L
Sbjct: 524 ASLQGFDVYFDLL 536

[9][TOP]
>UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=A3BR19_ORYSJ
          Length = 497

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 37/73 (50%), Positives = 49/73 (67%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + V + L  L P+E+ II  RFG  DGE ++L  IG++FGLS+ERI QL+NRAL +LK+ 
Sbjct: 424 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 483

Query: 386 LVSQGLDAYADKL 348
              QG D Y D L
Sbjct: 484 ASLQGFDVYFDLL 496

[10][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/66 (48%), Positives = 48/66 (72%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VLN L P+E+R++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+ 
Sbjct: 296 VLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 355

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 356 LKDYLE 361

[11][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9L1K5_THERP
          Length = 340

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 29/70 (41%), Positives = 49/70 (70%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           R +  +L  L P+ER +++LR+G  DGE R+L+E+G++ G+SRER+ Q+EN AL +L++ 
Sbjct: 269 RDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRRI 328

Query: 386 LVSQGLDAYA 357
              +  + YA
Sbjct: 329 ARERLAEYYA 338

[12][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
           JW/NM-WN-LF RepID=B2A1Z3_NATTJ
          Length = 360

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 31/66 (46%), Positives = 50/66 (75%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L P+E++++RLRFG +DG+ R+L E+G+ FG++RERI Q+E +AL +L+  + S+ 
Sbjct: 295 VLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKR 354

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 355 LKDYLD 360

[13][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
           RepID=C0GBZ7_9FIRM
          Length = 372

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 30/67 (44%), Positives = 49/67 (73%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L P+E++++ LRFG EDG  R+L E+G++FG++RERI Q+E +AL +L+  + S+
Sbjct: 306 DVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSK 365

Query: 374 GLDAYAD 354
            L  Y +
Sbjct: 366 RLKDYLE 372

[14][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
          Length = 525

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL +LK+   +Q
Sbjct: 449 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQ 508

Query: 374 GLDAY 360
            L  Y
Sbjct: 509 VLQEY 513

[15][TOP]
>UniRef100_B1VYB1 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
           griseus NBRC 13350 RepID=B1VYB1_STRGG
          Length = 363

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/70 (45%), Positives = 48/70 (68%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G EDG  R+L EIG IFG++RERI Q+E++ L RL+   
Sbjct: 294 HLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDHA 353

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 354 FADQLRGYLD 363

[16][TOP]
>UniRef100_C5D2W5 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
           RepID=C5D2W5_GEOSW
          Length = 831

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 32/54 (59%), Positives = 41/54 (75%)
 Frame = -2

Query: 533 PKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           P++ +II  RFGF  GEE +L EIGE+FG+SRERI Q+EN+AL  LKKC   +G
Sbjct: 775 PRDWKIILYRFGFMTGEEMTLQEIGELFGVSRERIRQIENKALKHLKKCPALKG 828

[17][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
           20745 RepID=C4CIZ0_9CHLR
          Length = 390

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 34/69 (49%), Positives = 47/69 (68%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           + + L+KL  +ERRII LRFG EDG+ R+L E+G  FG++RERI Q+E +AL +L+    
Sbjct: 322 ISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPTY 381

Query: 380 SQGLDAYAD 354
           S  L  Y D
Sbjct: 382 SHRLRGYLD 390

[18][TOP]
>UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces
           roseosporus NRRL 15998 RepID=UPI0001AEF979
          Length = 363

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/71 (43%), Positives = 49/71 (69%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +H+  VL+ L  +ER++++LR+G +DG  R+L EIG IFG++RERI Q+E++ L RL+  
Sbjct: 293 QHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDH 352

Query: 386 LVSQGLDAYAD 354
             +  L  Y D
Sbjct: 353 AFADQLRGYLD 363

[19][TOP]
>UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440
           RepID=A4X4X9_SALTO
          Length = 332

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 33/70 (47%), Positives = 48/70 (68%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + +  VL  L  +E+ +IRLRFG +DG +R+L E+G  FGLSRERI Q+E   L++L+  
Sbjct: 262 QEMCGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLHKLRAP 321

Query: 386 LVSQGLDAYA 357
             +Q L+AYA
Sbjct: 322 ERAQRLEAYA 331

[20][TOP]
>UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GE88_9ACTO
          Length = 338

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 30/71 (42%), Positives = 50/71 (70%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           RH+ +VL+ L  +ER++++LR+G +DG  R+L EIG +FG++RERI Q+E + L +L+  
Sbjct: 268 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 327

Query: 386 LVSQGLDAYAD 354
           + +  L  Y D
Sbjct: 328 VFADQLRGYLD 338

[21][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
           RepID=Q0SRH3_CLOPS
          Length = 366

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 358 SKKLKDYLD 366

[22][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q892T0_CLOTE
          Length = 366

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 358 SKKLKDYLD 366

[23][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67RX0_SYMTH
          Length = 388

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E +++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+ 
Sbjct: 323 VLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKK 382

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 383 LKDYLE 388

[24][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
           Eklund 17B RepID=B2TMC7_CLOBB
          Length = 374

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 306 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 365

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 366 SKKLKDYLD 374

[25][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
           8052 RepID=A6LRQ7_CLOB8
          Length = 376

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 308 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 367

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 368 SKKLKDYLD 376

[26][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
           RepID=A5N6R2_CLOK5
          Length = 354

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 286 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 345

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 346 SKKLKDYLD 354

[27][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
           RepID=A0Q1P4_CLONN
          Length = 368

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 360 SKKLKDYLD 368

[28][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
           RepID=Q0TNV3_CLOP1
          Length = 366

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 358 SKKLKDYLD 366

[29][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
           RepID=C6PTX7_9CLOT
          Length = 361

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 293 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 352

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 353 SKKLKDYLD 361

[30][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
           1873 RepID=C5VRR6_CLOBO
          Length = 368

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 360 SKKLKDYLD 368

[31][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
           RepID=B2V2K8_CLOBA
          Length = 374

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 306 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 365

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 366 SKKLKDYLD 374

[32][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1IAB3_9CLOT
          Length = 370

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 302 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 361

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 362 SKKLKDYLD 370

[33][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
           RepID=B1QWY9_CLOBU
          Length = 369

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 301 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 360

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 361 SKKLKDYLD 369

[34][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
           RepID=A5I618_CLOBH
          Length = 361

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 293 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 352

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 353 SKKLKDYLD 361

[35][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
           Eklund RepID=B1BDC8_CLOBO
          Length = 368

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 360 SKKLKDYLD 368

[36][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
           RepID=RPOD_CLOAB
          Length = 378

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/69 (44%), Positives = 48/69 (69%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +L +LN L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 310 LLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 369

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 370 SKKLKDYLD 378

[37][TOP]
>UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp.
           SPB78 RepID=UPI0001B55E40
          Length = 201

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/71 (42%), Positives = 49/71 (69%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           RH+ +VL+ L  +ER++++LR+G +DG  R+L EIG +FG++RERI Q+E + L +L+  
Sbjct: 131 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 190

Query: 386 LVSQGLDAYAD 354
             +  L  Y D
Sbjct: 191 AFADQLRGYLD 201

[38][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
           RepID=Q5YT68_NOCFA
          Length = 322

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/68 (47%), Positives = 49/68 (72%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V +VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E   + +L+K   
Sbjct: 254 VRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRKGER 313

Query: 380 SQGLDAYA 357
           +  L AYA
Sbjct: 314 ADRLRAYA 321

[39][TOP]
>UniRef100_O67437 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
           RepID=O67437_AQUAE
          Length = 310

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/66 (48%), Positives = 47/66 (71%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + + ++L+KL  KER++I LRFG +  E ++L EIGEI GLSRER+ QLE RAL +L+  
Sbjct: 240 KEIDDLLSKLTDKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRALRKLRSL 299

Query: 386 LVSQGL 369
            + + L
Sbjct: 300 AMKRHL 305

[40][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NG03_ROSCS
          Length = 541

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/69 (46%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V  VLN+L  +ERR+++LRFG EDG  R+L E+G+ FG++RERI Q+E +AL +L+   +
Sbjct: 473 VEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRL 532

Query: 380 SQGLDAYAD 354
            + L  Y +
Sbjct: 533 GKKLRDYLE 541

[41][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5UQ16_ROSS1
          Length = 541

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/69 (46%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V  VLN+L  +ERR+++LRFG EDG  R+L E+G+ FG++RERI Q+E +AL +L+   +
Sbjct: 473 VEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRL 532

Query: 380 SQGLDAYAD 354
            + L  Y +
Sbjct: 533 GKKLRDYLE 541

[42][TOP]
>UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B
           RepID=C5RE54_CLOCL
          Length = 363

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 31/69 (44%), Positives = 48/69 (69%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++NVL+ L P+E +++RLRFG +DG  R+L E+G  F ++RERI Q+E +AL +L+    
Sbjct: 295 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSR 354

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 355 SKKLKDYLD 363

[43][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RYI5_OSTLU
          Length = 344

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 29/55 (52%), Positives = 43/55 (78%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL +LK+
Sbjct: 263 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQ 317

[44][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
           DNA-directed RNA polymerase/ transcription factor n=1
           Tax=Vitis vinifera RepID=UPI000198388B
          Length = 578

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 31/64 (48%), Positives = 45/64 (70%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VLN L P+E+++IR R+G EDG  ++L EIGE+ G+SRERI Q+E+ A  +LK    ++ 
Sbjct: 512 VLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKH 571

Query: 371 LDAY 360
           L  Y
Sbjct: 572 LQQY 575

[45][TOP]
>UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC
           49989 RepID=C7GZY7_9FIRM
          Length = 447

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 31/69 (44%), Positives = 50/69 (72%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +L VLN L  +ER +++LRFG  DG++R+L E+G+ F ++RERI Q+E++A+ +LK   +
Sbjct: 379 LLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLKHPNM 438

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 439 SKKLRDYID 447

[46][TOP]
>UniRef100_C6W8L5 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
           RepID=C6W8L5_ACTMD
          Length = 349

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 28/66 (42%), Positives = 47/66 (71%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L P+E  ++R+R+GF DG   +L E+G ++G++RERI Q+E+R + +L+    S+G
Sbjct: 284 VLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVYGVTRERIRQIESRTMAKLQHPARSRG 343

Query: 371 LDAYAD 354
           L+ Y D
Sbjct: 344 LEGYLD 349

[47][TOP]
>UniRef100_A8UY45 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UY45_9AQUI
          Length = 309

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + + ++L+KL  KERR++ LRFG +  E ++L EIG+I G+SRER+ QLE RAL +L+  
Sbjct: 239 KEIYDLLDKLPEKERRVVELRFGLKGNEPKTLREIGDILGVSRERVRQLETRALRKLRSL 298

Query: 386 LVSQGL 369
            + + L
Sbjct: 299 AMKRHL 304

[48][TOP]
>UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
           M21/2 RepID=A8SFN0_9FIRM
          Length = 360

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 32/72 (44%), Positives = 49/72 (68%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           R +L+VL  L P+E R+I LRFG EDG  R+L E+G+ F ++RER+ Q+E +AL +L+  
Sbjct: 289 RELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKALRKLRHP 348

Query: 386 LVSQGLDAYADK 351
             ++ L  Y D+
Sbjct: 349 SRAKLLRDYLDE 360

[49][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
          Length = 595

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 28/55 (50%), Positives = 43/55 (78%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL +L++
Sbjct: 519 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 573

[50][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
           communis RepID=B9SDA3_RICCO
          Length = 569

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 32/64 (50%), Positives = 44/64 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VLN L P+E +++R RFG EDG  ++L EIGEI G+SRERI Q+E+ A  +LK    ++ 
Sbjct: 503 VLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQ 562

Query: 371 LDAY 360
           L  Y
Sbjct: 563 LKQY 566

[51][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PSL8_VITVI
          Length = 235

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 31/64 (48%), Positives = 45/64 (70%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VLN L P+E+++IR R+G EDG  ++L EIGE+ G+SRERI Q+E+ A  +LK    ++ 
Sbjct: 169 VLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKH 228

Query: 371 LDAY 360
           L  Y
Sbjct: 229 LQQY 232

[52][TOP]
>UniRef100_UPI0001AEE245 RNA polymerase sigma factor n=1 Tax=Streptomyces albus J1074
           RepID=UPI0001AEE245
          Length = 357

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 29/71 (40%), Positives = 50/71 (70%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +H+  VL  L  +ER++++LR+GF+DG  R+L EIG +FG++RER+ Q+E++ L RL++ 
Sbjct: 287 QHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREH 346

Query: 386 LVSQGLDAYAD 354
             +  L  Y +
Sbjct: 347 TAAGQLRGYLE 357

[53][TOP]
>UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus
           RepID=Q9R5W0_STRGR
          Length = 357

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 29/71 (40%), Positives = 50/71 (70%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +H+  VL  L  +ER++++LR+GF+DG  R+L EIG +FG++RER+ Q+E++ L RL++ 
Sbjct: 287 QHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREH 346

Query: 386 LVSQGLDAYAD 354
             +  L  Y +
Sbjct: 347 TAAGQLRGYLE 357

[54][TOP]
>UniRef100_Q8KUI1 RNA polymerase sigma factor n=1 Tax=Actinosynnema pretiosum subsp.
           auranticum RepID=Q8KUI1_ACTPA
          Length = 348

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 28/66 (42%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E  ++R+R+GF DG   +L E+G ++G++RERI Q+E+R + +L+    S+G
Sbjct: 283 VLETLTPREAGVVRMRYGFPDGVLHTLDEVGRVYGVTRERIRQIESRTMAKLQHPARSRG 342

Query: 371 LDAYAD 354
           L+ Y D
Sbjct: 343 LEGYLD 348

[55][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
           RepID=C1F1D9_ACIC5
          Length = 597

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E R+I++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+    S+ 
Sbjct: 527 VLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRK 586

Query: 371 LDAYAD 354
           L A+ D
Sbjct: 587 LRAFVD 592

[56][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
           prausnitzii A2-165 RepID=C7H3D6_9FIRM
          Length = 359

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 29/58 (50%), Positives = 43/58 (74%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           R + NVL  L P+E R++ LRFG EDG+ R+L E+G+ F ++RERI Q+E +AL +L+
Sbjct: 288 RELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALRKLR 345

[57][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
           RepID=C4RDH0_9ACTO
          Length = 334

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 33/65 (50%), Positives = 45/65 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E+ +IRLRFG +DG +R+L E+G  FGLSRERI Q+E   L +L+    +Q 
Sbjct: 269 VLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLRAPERAQR 328

Query: 371 LDAYA 357
           L+AYA
Sbjct: 329 LEAYA 333

[58][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
           acidaminovorans RepID=B0VJJ6_9BACT
          Length = 579

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           + V  VL  L P+E R+IRLRFG +DG  R+L E+G IF ++RERI Q+E++AL +L+
Sbjct: 504 KQVDEVLKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLR 561

[59][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MUC7_9CHLO
          Length = 587

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 28/55 (50%), Positives = 43/55 (78%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL +L++
Sbjct: 504 NVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 558

[60][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
           RepID=Q3Z904_DEHE1
          Length = 520

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+ERR+++LRFG EDG  R+L E+G+ F ++RERI Q+E +AL +L+    S+ 
Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 515 LKDYLE 520

[61][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
           wolfei str. Goettingen RepID=Q0AWU4_SYNWW
          Length = 358

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 30/70 (42%), Positives = 48/70 (68%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  +LN L  +E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+   
Sbjct: 289 HLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 348

Query: 383 VSQGLDAYAD 354
            S+ L  Y +
Sbjct: 349 RSKKLKDYIE 358

[62][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
           RepID=B8I6N1_CLOCE
          Length = 359

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 30/69 (43%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 291 LIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 350

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 351 SKKLKDYLD 359

[63][TOP]
>UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA
          Length = 360

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = -2

Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369
           LN+L  +ER+I++LR+G  DG+ R+L E+G  FG++RER  Q+E  AL RL+   V Q L
Sbjct: 296 LNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRL 355

Query: 368 DAYAD 354
            +Y D
Sbjct: 356 HSYLD 360

[64][TOP]
>UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205
           RepID=A8M7Z0_SALAI
          Length = 328

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 34/70 (48%), Positives = 46/70 (65%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + V  VL  L  +E+ +IRLRFG +DG +R+L E+G  FGLSRERI Q+E   L +L+  
Sbjct: 258 QEVRGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLRAP 317

Query: 386 LVSQGLDAYA 357
             +Q L AYA
Sbjct: 318 ERAQRLAAYA 327

[65][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
           RepID=A5FRQ7_DEHSB
          Length = 520

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+ERR+++LRFG EDG  R+L E+G+ F ++RERI Q+E +AL +L+    S+ 
Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 515 LKDYLE 520

[66][TOP]
>UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
           RepID=P71106_CHLAU
          Length = 346

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = -2

Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369
           LN+L  +ER+I++LR+G  DG+ R+L E+G  FG++RER  Q+E  AL RL+   V Q L
Sbjct: 282 LNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRL 341

Query: 368 DAYAD 354
            +Y D
Sbjct: 342 HSYLD 346

[67][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
           20544 RepID=C9KNX0_9FIRM
          Length = 373

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 30/67 (44%), Positives = 48/67 (71%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+
Sbjct: 307 DVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSR 366

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 367 KLKDFLD 373

[68][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
           RepID=A8CRQ1_9CHLR
          Length = 520

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+ERR+++LRFG EDG  R+L E+G+ F ++RERI Q+E +AL +L+    S+ 
Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 515 LKDYLE 520

[69][TOP]
>UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1
           Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA
          Length = 404

 Score = 65.1 bits (157), Expect = 4e-09
 Identities = 26/57 (45%), Positives = 45/57 (78%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           +  ++N L P+E+ ++R+R+G +DGE R+L EIG IF ++RER+ Q+E RAL++L++
Sbjct: 324 ISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHKLRQ 380

[70][TOP]
>UniRef100_UPI0001B56202 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C
           RepID=UPI0001B56202
          Length = 381

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 312 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 371

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 372 FADQLRGYLD 381

[71][TOP]
>UniRef100_UPI0001B51C3A RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes
           DSM 40736 RepID=UPI0001B51C3A
          Length = 438

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 369 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 428

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 429 FADQLRGYLD 438

[72][TOP]
>UniRef100_UPI0001B4B283 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC
           53653 RepID=UPI0001B4B283
          Length = 444

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 375 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 434

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 435 FADQLRGYLD 444

[73][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001694293
          Length = 367

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG EDG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 301 HVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 361 RLKDFLD 367

[74][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
           RepID=Q10UV2_TRIEI
          Length = 386

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           +VLN L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 320 SVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373

[75][TOP]
>UniRef100_A8L6K9 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec
           RepID=A8L6K9_FRASN
          Length = 423

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           NVL  L P+ER ++RLRFG  DG++ +L+E+G   GL+RERI Q+E   L  L+K  V+ 
Sbjct: 357 NVLGALNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 416

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 417 RLREFLD 423

[76][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
           27405 RepID=A3DDV0_CLOTH
          Length = 358

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/69 (43%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 290 LVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 349

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 350 SKKLKDYLD 358

[77][TOP]
>UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22
           RepID=C9ZAW9_STRSC
          Length = 387

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 318 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 377

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 378 FADQLRGYLD 387

[78][TOP]
>UniRef100_C9N712 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Streptomyces flavogriseus ATCC 33331
           RepID=C9N712_9ACTO
          Length = 358

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 48/70 (68%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G +DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 289 HLEVVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLDKLRGHA 348

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 349 FADQLRGYLD 358

[79][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
          Length = 358

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/69 (43%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 290 LVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 349

Query: 380 SQGLDAYAD 354
           S+ L  Y D
Sbjct: 350 SKKLKDYLD 358

[80][TOP]
>UniRef100_B5HVY1 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
           RepID=B5HVY1_9ACTO
          Length = 374

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 305 HLEAVLSTLGERERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 364

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 365 FADQLRGYLD 374

[81][TOP]
>UniRef100_B5GQH3 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC
           27064 RepID=B5GQH3_STRCL
          Length = 385

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 316 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 375

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 376 FADQLRGYLD 385

[82][TOP]
>UniRef100_B4V476 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
           RepID=B4V476_9ACTO
          Length = 362

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 293 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 352

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 353 FADQLRGYLD 362

[83][TOP]
>UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE
          Length = 541

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 29/64 (45%), Positives = 45/64 (70%)
 Frame = -2

Query: 539 LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAY 360
           L P+E+ II  RFG  DG+ ++L  IG+++GLS+ERI Q++N+AL +L+  + +QG   Y
Sbjct: 477 LSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFHVY 536

Query: 359 ADKL 348
            D L
Sbjct: 537 FDLL 540

[84][TOP]
>UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FJ30_MAIZE
          Length = 541

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 29/64 (45%), Positives = 45/64 (70%)
 Frame = -2

Query: 539 LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAY 360
           L P+E+ II  RFG  DG+ ++L  IG+++GLS+ERI Q++N+AL +L+  + +QG   Y
Sbjct: 477 LSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFHVY 536

Query: 359 ADKL 348
            D L
Sbjct: 537 FDLL 540

[85][TOP]
>UniRef100_P27785 RNA polymerase sigma factor rpoD n=1 Tax=Streptomyces aureofaciens
           RepID=RPOD_STRAU
          Length = 317

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 248 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 307

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 308 FADQLRGYLD 317

[86][TOP]
>UniRef100_UPI0001B4E713 RNA polymerase principal sigma factor n=1 Tax=Streptomyces lividans
           TK24 RepID=UPI0001B4E713
          Length = 365

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 29/71 (40%), Positives = 48/71 (67%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +H+  VL+ L  +ER++++LR+G  DG  R+L EIG +FG++RERI Q+E++ L +L+  
Sbjct: 295 QHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 354

Query: 386 LVSQGLDAYAD 354
             +  L  Y D
Sbjct: 355 AYADQLRGYLD 365

[87][TOP]
>UniRef100_UPI0001B4E11E RNA polymerase principal sigma factor n=1 Tax=Streptomyces
           viridochromogenes DSM 40736 RepID=UPI0001B4E11E
          Length = 332

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 31/66 (46%), Positives = 45/66 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LKK   S 
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 326

Query: 374 GLDAYA 357
           G DA A
Sbjct: 327 GFDAAA 332

[88][TOP]
>UniRef100_UPI0001AF1456 RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC
           14672 RepID=UPI0001AF1456
          Length = 430

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 361 HLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 420

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 421 FADQLRGYLD 430

[89][TOP]
>UniRef100_Q82BM5 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
           RepID=Q82BM5_STRAW
          Length = 389

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/70 (42%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L+   
Sbjct: 320 HLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 379

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 380 FADQLRGYLD 389

[90][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+ 
Sbjct: 302 VLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 361

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 362 LKDYLE 367

[91][TOP]
>UniRef100_Q0RDY7 RNA polymerase sigma factor n=1 Tax=Frankia alni ACN14a
           RepID=Q0RDY7_FRAAA
          Length = 373

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           NVL  L P+ER ++RLRFG  DG++ +L+E+G   GL+RERI Q+E   L  L+K  V+ 
Sbjct: 307 NVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 366

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 367 RLREFLD 373

[92][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
          Length = 432

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/68 (44%), Positives = 47/68 (69%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG EDG  R+L E+G +FG++RERI Q+E +AL +L+    S+
Sbjct: 362 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421

Query: 374 GLDAYADK 351
            L  + D+
Sbjct: 422 QLKDFMDE 429

[93][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9KZ85_THERP
          Length = 369

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 32/65 (49%), Positives = 46/65 (70%)
 Frame = -2

Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369
           L++L  +ERRII LR+G EDG+ R+L E+G  FG++RERI Q+E +AL +L+    S+ L
Sbjct: 305 LSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPSCSRFL 364

Query: 368 DAYAD 354
             Y D
Sbjct: 365 RGYLD 369

[94][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+ 
Sbjct: 307 VLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 366

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 367 LKDYLE 372

[95][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KDV7_CYAP7
          Length = 376

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 310 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363

[96][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WS32_CYAA5
          Length = 416

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[97][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JGK3_MICAN
          Length = 416

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[98][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
           23779 RepID=A9B4B0_HERA2
          Length = 400

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/56 (50%), Positives = 45/56 (80%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           V  VL++L  +E+R+++LRFG EDG +R+L E+G+ FG++RERI Q+E +AL +L+
Sbjct: 332 VAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLR 387

[99][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
           RepID=A1UF13_MYCSK
          Length = 319

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 31/70 (44%), Positives = 50/70 (71%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           RHVL  L++   +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E   + +L+  
Sbjct: 252 RHVLATLDE---REQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308

Query: 386 LVSQGLDAYA 357
             +  L +YA
Sbjct: 309 ERADRLRSYA 318

[100][TOP]
>UniRef100_Q8GGT8 RNA polymerase sigma factor n=1 Tax=Frankia sp. ACN14a
           RepID=Q8GGT8_9ACTO
          Length = 385

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           NVL  L P+ER ++RLRFG  DG++ +L+E+G   GL+RERI Q+E   L  L+K  V+ 
Sbjct: 319 NVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 378

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 379 RLREFLD 385

[101][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C7J7_CROWT
          Length = 414

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 348 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 401

[102][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
           RepID=C7QR23_CYAP0
          Length = 379

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 313 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366

[103][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
          Length = 432

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/68 (44%), Positives = 47/68 (69%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG EDG  R+L E+G +FG++RERI Q+E +AL +L+    S+
Sbjct: 362 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421

Query: 374 GLDAYADK 351
            L  + D+
Sbjct: 422 QLKDFMDE 429

[104][TOP]
>UniRef100_B5HKY0 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
           RepID=B5HKY0_9ACTO
          Length = 332

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 31/66 (46%), Positives = 45/66 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LKK   S 
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 326

Query: 374 GLDAYA 357
           G DA A
Sbjct: 327 GFDAAA 332

[105][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AUJ5_9CHRO
          Length = 377

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 311 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 364

[106][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
           RepID=B1PVV9_MICAE
          Length = 416

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[107][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YBI5_MICAE
          Length = 416

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[108][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3ISY9_9CHRO
          Length = 416

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[109][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q98RZ3_GUITH
          Length = 460

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 25/55 (45%), Positives = 44/55 (80%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           NV+N L P+ER ++R+R+G +DG  ++L EIG+IF ++RER+ Q+E +A+ +L++
Sbjct: 359 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 413

[110][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q8S9D0_GUITH
          Length = 490

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 25/55 (45%), Positives = 44/55 (80%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           NV+N L P+ER ++R+R+G +DG  ++L EIG+IF ++RER+ Q+E +A+ +L++
Sbjct: 376 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430

[111][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
           RepID=A9RXT3_PHYPA
          Length = 579

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+ER ++RLRFG +DG  ++L EIG+IF ++RERI Q+E +A+ +L++   +  
Sbjct: 508 VLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSI 567

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 568 LREYLD 573

[112][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
          Length = 485

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 25/55 (45%), Positives = 44/55 (80%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           NV+N L P+ER ++R+R+G +DG  ++L EIG+IF ++RER+ Q+E +A+ +L++
Sbjct: 376 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430

[113][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
           RepID=RPOD_SYNY3
          Length = 425

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 359 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412

[114][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
           RepID=RPOD_MICAE
          Length = 416

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 28/54 (51%), Positives = 43/54 (79%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403

[115][TOP]
>UniRef100_P18182 RNA polymerase principal sigma factor hrdA n=1 Tax=Streptomyces
           coelicolor RepID=HRDA_STRCO
          Length = 396

 Score = 64.3 bits (155), Expect = 6e-09
 Identities = 29/71 (40%), Positives = 48/71 (67%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +H+  VL+ L  +ER++++LR+G  DG  R+L EIG +FG++RERI Q+E++ L +L+  
Sbjct: 326 QHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 385

Query: 386 LVSQGLDAYAD 354
             +  L  Y D
Sbjct: 386 AYADQLRGYLD 396

[116][TOP]
>UniRef100_UPI0001B5772B RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces sp.
           C RepID=UPI0001B5772B
          Length = 325

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           ++L KL  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LK+     
Sbjct: 260 DLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT 319

Query: 374 GLDAYA 357
           G DA A
Sbjct: 320 GFDAVA 325

[117][TOP]
>UniRef100_Q2J784 RNA polymerase sigma factor n=1 Tax=Frankia sp. CcI3
           RepID=Q2J784_FRASC
          Length = 422

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           NVL  L P+ER ++RLRFG  DG++ +L+E+G   GL+RERI Q+E   L  L+K  V+ 
Sbjct: 356 NVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 415

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 416 RLREFLD 422

[118][TOP]
>UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
           RepID=B8G4K7_CHLAD
          Length = 345

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 32/71 (45%), Positives = 44/71 (61%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           R +   LN+L  +ERRII LR+G  DG  R+L E+G + G++RER  Q+E  AL RL+  
Sbjct: 275 RDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEALRRLRSP 334

Query: 386 LVSQGLDAYAD 354
            + Q L  Y D
Sbjct: 335 EIGQHLRDYLD 345

[119][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=B2IZW2_NOSP7
          Length = 332

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 28/59 (47%), Positives = 45/59 (76%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           +++ N+L+KL P++R+I+  RFG  DG E SL+EIG+  G+SRER+ Q+E +AL  L++
Sbjct: 263 QNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRR 321

[120][TOP]
>UniRef100_Q59815 RNA polymerase sigma factor n=1 Tax=Streptomyces aureofaciens
           RepID=Q59815_STRAU
          Length = 325

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           ++L KL  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LK+     
Sbjct: 260 DLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT 319

Query: 374 GLDAYA 357
           G DA A
Sbjct: 320 GFDAVA 325

[121][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = -2

Query: 566 RHVLN-VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           R  LN VL  L P+E++++RLRFG +DG  R+L E+G+ FG++RERI Q+E + L +L+ 
Sbjct: 298 REQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 357

Query: 389 CLVSQGLDAYAD 354
              S+ L  Y +
Sbjct: 358 PSRSKKLKDYLE 369

[122][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
           RepID=C8P839_9LACO
          Length = 380

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367

[123][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
           101-4-CHN RepID=C7XU09_9LACO
          Length = 381

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 315 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 368

[124][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
           ATCC 33313 RepID=C5RBJ7_WEIPA
          Length = 378

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG EDG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 312 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 371

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 372 QLRDFLD 378

[125][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
           RepID=C2EX53_LACRE
          Length = 380

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367

[126][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
           49540 RepID=C2ESB4_9LACO
          Length = 380

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367

[127][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
           RepID=A5VJI3_LACRD
          Length = 380

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367

[128][TOP]
>UniRef100_B4VDF5 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
           RepID=B4VDF5_9ACTO
          Length = 325

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           ++L KL  +   II++R+G +DG ER+L+E+G+  GL+RERI Q+E  AL  LKK     
Sbjct: 260 DLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDT 319

Query: 374 GLDAYA 357
           G DA A
Sbjct: 320 GFDAVA 325

[129][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
           RepID=B3XRX4_LACRE
          Length = 380

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 42/54 (77%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367

[130][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 27/53 (50%), Positives = 41/53 (77%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           VL  L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+
Sbjct: 303 VLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLR 355

[131][TOP]
>UniRef100_UPI0001B4B7AF RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus
           Tu4000 RepID=UPI0001B4B7AF
          Length = 412

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/70 (41%), Positives = 47/70 (67%)
 Frame = -2

Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384
           H+  VL+ L  +ER++++LR+G  DG  R+L EIG +FG++RERI Q+E++ L +L+   
Sbjct: 343 HLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHA 402

Query: 383 VSQGLDAYAD 354
            +  L  Y D
Sbjct: 403 FADQLRGYLD 412

[132][TOP]
>UniRef100_UPI0000DAED90 hypothetical protein Wendoof_01000264 n=1 Tax=Wolbachia
           endosymbiont of Drosophila willistoni TSC#14030-0811.24
           RepID=UPI0000DAED90
          Length = 502

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 436 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 490

[133][TOP]
>UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8R970_THETN
          Length = 372

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 304 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 363

Query: 380 SQGLDAYAD 354
           S+ L  + D
Sbjct: 364 SKKLKDFLD 372

[134][TOP]
>UniRef100_Q73FM9 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
           Drosophila melanogaster RepID=Q73FM9_WOLPM
          Length = 642

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 576 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 630

[135][TOP]
>UniRef100_C0R506 RNA polymerase sigma factor n=2 Tax=Wolbachia RepID=C0R506_WOLWR
          Length = 650

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 584 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 638

[136][TOP]
>UniRef100_B3CMQ1 RNA polymerase sigma factor n=2 Tax=Wolbachia endosymbiont of Culex
           quinquefasciatus RepID=B3CMQ1_WOLPP
          Length = 633

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 567 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 621

[137][TOP]
>UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20
           RepID=B1MYH4_LEUCK
          Length = 432

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 30/67 (44%), Positives = 45/67 (67%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG EDG  R+L E+G +FG++RERI Q+E +AL +L+    S+
Sbjct: 362 SVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 422 QLKDFMD 428

[138][TOP]
>UniRef100_Q4ECZ2 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
           Drosophila ananassae RepID=Q4ECZ2_9RICK
          Length = 270

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 204 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 258

[139][TOP]
>UniRef100_Q4E857 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
           Drosophila simulans RepID=Q4E857_9RICK
          Length = 183

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 117 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 171

[140][TOP]
>UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii
           subsp. mathranii str. A3 RepID=C6Q7U2_9THEO
          Length = 357

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348

Query: 380 SQGLDAYAD 354
           S+ L  + D
Sbjct: 349 SKKLKDFLD 357

[141][TOP]
>UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
           RepID=C6PMA8_9THEO
          Length = 357

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348

Query: 380 SQGLDAYAD 354
           S+ L  + D
Sbjct: 349 SKKLKDFLD 357

[142][TOP]
>UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS
          Length = 357

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 289 LIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348

Query: 380 SQGLDAYAD 354
           S+ L  + D
Sbjct: 349 SKKLKDFLD 357

[143][TOP]
>UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter
           RepID=B0K6Y0_THEPX
          Length = 357

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348

Query: 380 SQGLDAYAD 354
           S+ L  + D
Sbjct: 349 SKKLKDFLD 357

[144][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
           20162 RepID=C2APA0_TSUPA
          Length = 330

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 30/68 (44%), Positives = 48/68 (70%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V +VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E   + +L+    
Sbjct: 262 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGER 321

Query: 380 SQGLDAYA 357
           +  L AYA
Sbjct: 322 ADRLRAYA 329

[145][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
           RepID=B2GBZ9_LACF3
          Length = 380

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 41/54 (75%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL+ L  +E  ++RLRFG +DG  R+L E+G +FG++RERI Q+E +AL +L+
Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLR 367

[146][TOP]
>UniRef100_C0F9L6 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of
           Muscidifurax uniraptor RepID=C0F9L6_9RICK
          Length = 669

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           NVL  L PKE RI+R+RFG  +DG+E +L E+G+IF ++RERI Q+E +AL +LK
Sbjct: 603 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 657

[147][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
           RepID=A7VZA6_9CLOT
          Length = 365

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L P+E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +AL +L+    S+ 
Sbjct: 300 VLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKK 359

Query: 371 LDAYAD 354
           L  + D
Sbjct: 360 LKDFLD 365

[148][TOP]
>UniRef100_A7B7L9 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
           RepID=A7B7L9_RUMGN
          Length = 297

 Score = 63.5 bits (153), Expect = 1e-08
 Identities = 30/57 (52%), Positives = 43/57 (75%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           V  +L+ L  KE++I+RLR+G EDG   +L E G+I G++RERI QLE+RAL +L+K
Sbjct: 235 VQEMLSTLTEKEQKILRLRYGLEDGNVHTLEETGQILGVTRERIRQLESRALEKLRK 291

[149][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
          Length = 316

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 41/53 (77%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           VL+ L  +E  ++RLRFG EDG  R+L E+G++FG++RERI Q+E +AL +L+
Sbjct: 251 VLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLR 303

[150][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8EPY6_OCEIH
          Length = 380

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 314 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 374 RLKDFLD 380

[151][TOP]
>UniRef100_Q82H52 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
           RepID=Q82H52_STRAW
          Length = 331

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L  +   II++R+G +DG ER+L+E+G+  GL+RERI Q+E  AL  LKK   S 
Sbjct: 266 DLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 325

Query: 374 GLDAYA 357
           G DA A
Sbjct: 326 GFDAAA 331

[152][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NHG5_GLOVI
          Length = 400

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           VLN L P+ER ++RLR+G +DG  ++L EIG++F ++RERI Q+E +AL +L+
Sbjct: 335 VLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 387

[153][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WHD0_BACSK
          Length = 373

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 307 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 367 RLKDFLD 373

[154][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L6R1_STAHJ
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[155][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[156][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           VL  L  +E++++RLRFG +DG  R+L E+G+IFG++RERI Q+E +AL +L+
Sbjct: 305 VLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357

[157][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 298 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 357

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 358 RLKDFLD 364

[158][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9E6V2_MACCJ
          Length = 366

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 300 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 359

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 360 RLKDFMD 366

[159][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
           carnosus TM300 RepID=B9DNN2_STACT
          Length = 369

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 303 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 362

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 363 RLKDFMD 369

[160][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
           RepID=B8E0E4_DICTD
          Length = 413

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/71 (40%), Positives = 49/71 (69%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + +  +LN+L  +ER I++LRFG ED + R+L E+G++F ++RERI Q+E +AL RL+  
Sbjct: 342 KDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHP 401

Query: 386 LVSQGLDAYAD 354
             S+ +  Y +
Sbjct: 402 SRSKKIKDYLE 412

[161][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
           H-6-12 RepID=B5YES0_DICT6
          Length = 413

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/71 (40%), Positives = 49/71 (69%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           + +  +LN+L  +ER I++LRFG ED + R+L E+G++F ++RERI Q+E +AL RL+  
Sbjct: 342 KDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHP 401

Query: 386 LVSQGLDAYAD 354
             S+ +  Y +
Sbjct: 402 SRSKKIKDYLE 412

[162][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
           255-15 RepID=B1YL80_EXIS2
          Length = 361

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 295 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 354

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 355 RLKDFLD 361

[163][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I1U1_DESAP
          Length = 360

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 30/67 (44%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E+R++RLRFG +DG  R+L E+G+ FG++RERI Q+E + L +L+    S+
Sbjct: 294 DVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLRHPSRSK 353

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 354 KLKDYLD 360

[164][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NGG2_ROSCS
          Length = 405

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           + L KL  +ERRII+LR+G  DG  R+L E+G  FG++RERI Q+E R L +L+     +
Sbjct: 339 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 398

Query: 374 GLDAYAD 354
           GL  Y +
Sbjct: 399 GLRGYLE 405

[165][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++ VL+ L P+E++++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 304 LIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSR 363

Query: 380 SQGLDAYAD 354
           S+ L  Y +
Sbjct: 364 SKKLKDYLE 372

[166][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5V244_ROSS1
          Length = 401

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 31/67 (46%), Positives = 44/67 (65%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           + L KL  +ERRII+LR+G  DG  R+L E+G  FG++RERI Q+E R L +L+     +
Sbjct: 335 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 394

Query: 374 GLDAYAD 354
           GL  Y +
Sbjct: 395 GLRGYLE 401

[167][TOP]
>UniRef100_Q8VM94 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians
           RepID=Q8VM94_RHOFA
          Length = 323

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 28/65 (43%), Positives = 48/65 (73%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E   + +L++   ++ 
Sbjct: 258 VLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQGDRAEK 317

Query: 371 LDAYA 357
           L +YA
Sbjct: 318 LRSYA 322

[168][TOP]
>UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis
           RepID=P77870_HELMO
          Length = 333

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+ 
Sbjct: 268 VLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 327

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 328 LKDYVD 333

[169][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
           RepID=O08332_STAAU
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[170][TOP]
>UniRef100_C9YWE0 Sigma factor HrdD n=1 Tax=Streptomyces scabiei 87.22
           RepID=C9YWE0_STRSC
          Length = 332

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LKK     
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326

Query: 374 GLDAYA 357
           G DA A
Sbjct: 327 GFDAVA 332

[171][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           A9299 RepID=C8M7C3_STAAU
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[172][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus A6300 RepID=C8LTM9_STAAU
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[173][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus 68-397 RepID=C8ACF1_STAAU
          Length = 342

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 276 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 335

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 336 RLKDFMD 342

[174][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
           aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[175][TOP]
>UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
           prausnitzii A2-165 RepID=C7H329_9FIRM
          Length = 461

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL--K 393
           + +   L  L P+E ++IRLRFG +DG  R+L E+G  FG++RER+ Q+E +A+ +L  +
Sbjct: 391 QQINQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSR 450

Query: 392 KCL 384
           KCL
Sbjct: 451 KCL 453

[176][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           W23144 RepID=C5QXG6_STAEP
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[177][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
           M23864:W1 RepID=C5QSV2_STAEP
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[178][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
           RepID=C4WCC7_STAWA
          Length = 367

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 301 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 361 RLKDFMD 367

[179][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
           RepID=C2M0X4_STAHO
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[180][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
           RepID=B9CVA9_STACP
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[181][TOP]
>UniRef100_A8VUB1 RNA polymerase sigma factor n=1 Tax=Bacillus selenitireducens MLS10
           RepID=A8VUB1_9BACI
          Length = 73

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 7   DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 66

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 67  RLKDFLD 73

[182][TOP]
>UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZN70_NODSP
          Length = 327

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 28/55 (50%), Positives = 43/55 (78%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           N+L +L P++R+++ LRFG EDG E SL+++GE   LSRER+ QLE++AL  L++
Sbjct: 262 NLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316

[183][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
           RepID=RPOD_STAEQ
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[184][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
           subsp. aureus N315 RepID=RPOD_STAAN
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[185][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
           RepID=RPOD_STAA8
          Length = 368

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+
Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 362 RLKDFMD 368

[186][TOP]
>UniRef100_P18249 RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces
           coelicolor RepID=HRDD_STRCO
          Length = 332

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 29/66 (43%), Positives = 45/66 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L P+   II++R+G +DG ER+L+E+G+  GL+RERI Q+E  AL  LKK     
Sbjct: 267 DLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326

Query: 374 GLDAYA 357
           G +A A
Sbjct: 327 GFEAAA 332

[187][TOP]
>UniRef100_UPI0001B51744 RNA polymerase principal sigma factor n=1 Tax=Streptomyces
           griseoflavus Tu4000 RepID=UPI0001B51744
          Length = 332

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LKK     
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326

Query: 374 GLDAYA 357
           G DA A
Sbjct: 327 GFDAAA 332

[188][TOP]
>UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN
           605 RepID=UPI0001B44D01
          Length = 377

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 311 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 370

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 371 VLRDYLD 377

[189][TOP]
>UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC
           12478 RepID=UPI0001AF41EF
          Length = 518

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 452 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 511

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 512 VLRDYLD 518

[190][TOP]
>UniRef100_UPI0001AF13A7 RNA polymerase principal sigma factor n=1 Tax=Streptomyces
           ghanaensis ATCC 14672 RepID=UPI0001AF13A7
          Length = 332

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LKK     
Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326

Query: 374 GLDAYA 357
           G DA A
Sbjct: 327 GFDAAA 332

[191][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
           DSM 15176 RepID=UPI0001966A7F
          Length = 364

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/67 (44%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L P+E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +AL +L+    S+
Sbjct: 298 DVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSK 357

Query: 374 GLDAYAD 354
            L  + D
Sbjct: 358 KLRDFLD 364

[192][TOP]
>UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17
           RepID=UPI000190610E
          Length = 530

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 464 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 523

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 524 VLRDYLD 530

[193][TOP]
>UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
           02_1987 RepID=UPI00019014BB
          Length = 197

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 131 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 190

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 191 VLRDYLD 197

[194][TOP]
>UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
           RepID=Q0S1K1_RHOSR
          Length = 323

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 50/68 (73%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V +VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E   + +L++   
Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314

Query: 380 SQGLDAYA 357
           ++ L +YA
Sbjct: 315 AERLRSYA 322

[195][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
           25745 RepID=Q03F68_PEDPA
          Length = 379

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S+ 
Sbjct: 314 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 373

Query: 371 LDAYAD 354
           L  + D
Sbjct: 374 LKDFLD 379

[196][TOP]
>UniRef100_Q02AB6 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus
           Ellin6076 RepID=Q02AB6_SOLUE
          Length = 563

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E +II++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+    S  
Sbjct: 492 VLKTLTPREEKIIKMRFGLEDGSEHTLEEVGQNFAVTRERIRQIEAKALRKLRHPSRSHR 551

Query: 371 LDAYAD 354
           L A+ +
Sbjct: 552 LRAFLE 557

[197][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
           RepID=B8CXH1_HALOH
          Length = 358

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/67 (44%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E+R++ LRFG EDG  R+L E+G+ FG++RERI Q+E +AL +L+    S+
Sbjct: 292 DVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSK 351

Query: 374 GLDAYAD 354
            L  Y +
Sbjct: 352 KLKDYLE 358

[198][TOP]
>UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=B2J7M4_NOSP7
          Length = 327

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 28/55 (50%), Positives = 42/55 (76%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390
           N+L +L P++R ++ LRFG EDG E SL+++GE   LSRER+ QLE++AL  L++
Sbjct: 262 NLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316

[199][TOP]
>UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
           RepID=B2HLZ7_MYCMM
          Length = 501

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 495 VLRDYLD 501

[200][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
           Ice1 RepID=B0TG57_HELMI
          Length = 371

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+ 
Sbjct: 306 VLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 365

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 366 LKDYLD 371

[201][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
           RepID=A8MG96_ALKOO
          Length = 372

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/69 (42%), Positives = 49/69 (71%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           ++ VL+ L P+E++++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L+    
Sbjct: 304 LVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSR 363

Query: 380 SQGLDAYAD 354
           S+ L  Y +
Sbjct: 364 SKKLKDYLE 372

[202][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
           SI RepID=A5D3U6_PELTS
          Length = 363

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E+R++RLRFG +DG  R+L E+G+ FG++RERI Q+E + L +L+    S+ 
Sbjct: 298 VLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKK 357

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 358 LKDYLD 363

[203][TOP]
>UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
           RepID=A0PT58_MYCUA
          Length = 501

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 495 VLRDYLD 501

[204][TOP]
>UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis
           RepID=Q60158_MYCBO
          Length = 528

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 522 VLRDYLD 528

[205][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
           35185 RepID=C9LTA9_9FIRM
          Length = 375

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E R++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L+    S+ 
Sbjct: 310 VLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRK 369

Query: 371 LDAYAD 354
           L  + D
Sbjct: 370 LKDFLD 375

[206][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
           ATCC 19414 RepID=C8NZE6_ERYRH
          Length = 459

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 31/67 (46%), Positives = 45/67 (67%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +AL +LK    S+ 
Sbjct: 392 VLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKR 451

Query: 371 LDAYADK 351
           L  + DK
Sbjct: 452 LRDFVDK 458

[207][TOP]
>UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4FZZ1_ABIDE
          Length = 372

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E R+I+LRFG EDG  R+L E+G+ F ++RERI Q+E++AL +L++   S+ 
Sbjct: 307 VLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQPSRSRK 366

Query: 371 LDAYAD 354
           L  Y +
Sbjct: 367 LKDYLE 372

[208][TOP]
>UniRef100_C2APF0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
           20162 RepID=C2APF0_TSUPA
          Length = 483

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 417 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 476

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 477 VLRDYLD 483

[209][TOP]
>UniRef100_C1ZIG8 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
           3776 RepID=C1ZIG8_PLALI
          Length = 290

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 28/64 (43%), Positives = 45/64 (70%)
 Frame = -2

Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387
           +HV  +L  +  +E +I+RLRFG +D E ++L EIGE  GL+RER+ Q+E+ AL R+ K 
Sbjct: 227 KHVYAMLETMDEREAKILRLRFGLDDSEPKTLKEIGEEMGLTRERVRQIESEALKRIAKR 286

Query: 386 LVSQ 375
           ++ +
Sbjct: 287 ILGE 290

[210][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
           17241 RepID=B0PFC0_9FIRM
          Length = 361

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+E +++RLRFG EDG  R+L E+G  F ++RERI Q+E +AL +L+    S+ 
Sbjct: 296 VLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKK 355

Query: 371 LDAYAD 354
           L  + D
Sbjct: 356 LKDFLD 361

[211][TOP]
>UniRef100_A8S616 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
           M21/2 RepID=A8S616_9FIRM
          Length = 457

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
 Frame = -2

Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL--KKCL 384
           L  L P+E ++IRLRFG +DG  R+L E+G  FG++RER+ Q+E +A+ +L  +KCL
Sbjct: 393 LKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSRKCL 449

[212][TOP]
>UniRef100_A2VL47 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis C
           RepID=A2VL47_MYCTU
          Length = 528

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 522 VLRDYLD 528

[213][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LQB0_PICSI
          Length = 495

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 47/66 (71%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E++++RLR+G +DG  +SL E+GE F LSRER+ Q+E +A+ +L++   +Q 
Sbjct: 429 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 488

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 489 LKHYLD 494

[214][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LLW6_PICSI
          Length = 592

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 47/66 (71%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E++++RLR+G +DG  +SL E+GE F LSRER+ Q+E +A+ +L++   +Q 
Sbjct: 526 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 585

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 586 LKHYLD 591

[215][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RTR4_PHYPA
          Length = 591

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 46/66 (69%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+ER ++RLRFG +DG+ R+L EIG +F ++RERI Q+E +A+ +L++   +  
Sbjct: 522 VLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGV 581

Query: 371 LDAYAD 354
           L  Y D
Sbjct: 582 LREYLD 587

[216][TOP]
>UniRef100_P0A603 RNA polymerase sigma factor rpoD n=7 Tax=Mycobacterium tuberculosis
           complex RepID=RPOD_MYCBO
          Length = 528

 Score = 62.8 bits (151), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 47/67 (70%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 522 VLRDYLD 528

[217][TOP]
>UniRef100_UPI0001B58588 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4
           RepID=UPI0001B58588
          Length = 476

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 410 SVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 469

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 470 VLRDYLD 476

[218][TOP]
>UniRef100_UPI0001B45B4B RNA polymerase sigma factor n=1 Tax=Mycobacterium intracellulare
           ATCC 13950 RepID=UPI0001B45B4B
          Length = 488

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 422 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 481

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 482 VLRDYLD 488

[219][TOP]
>UniRef100_UPI0001AEFC8C RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces
           roseosporus NRRL 11379 RepID=UPI0001AEFC8C
          Length = 308

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ KL  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LK+     
Sbjct: 243 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 302

Query: 374 GLDAYA 357
           G DA A
Sbjct: 303 GFDAAA 308

[220][TOP]
>UniRef100_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata
           obscuriglobus UQM 2246 RepID=UPI00016C4C50
          Length = 521

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L P+ER +I LRFG +DG  ++L E+ + +G++RERI Q+E R L +L++   S  
Sbjct: 452 VLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQPTRSCR 511

Query: 371 LDAYAD 354
           L+ +AD
Sbjct: 512 LEEFAD 517

[221][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=Q9L4T2_NOSP7
          Length = 389

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 27/53 (50%), Positives = 42/53 (79%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +AL +L+
Sbjct: 324 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376

[222][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NKZ2_GLOVI
          Length = 350

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 28/54 (51%), Positives = 41/54 (75%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           ++L  L P+ER ++RLR+G  DG  R+L E+G+ FGL+RERI Q+E RAL +L+
Sbjct: 279 SLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARALRKLR 332

[223][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
           RepID=Q74IZ4_LACJO
          Length = 372

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S  
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 366

Query: 371 LDAYAD 354
           L  + D
Sbjct: 367 LKDFLD 372

[224][TOP]
>UniRef100_Q73W40 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium subsp.
           paratuberculosis RepID=Q73W40_MYCPA
          Length = 509

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 443 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 502

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 503 VLRDYLD 509

[225][TOP]
>UniRef100_Q5YT84 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
           RepID=Q5YT84_NOCFA
          Length = 454

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 388 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 447

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 448 VLRDYLD 454

[226][TOP]
>UniRef100_Q2JLG8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
           JA-2-3B'a(2-13) RepID=Q2JLG8_SYNJB
          Length = 320

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 26/53 (49%), Positives = 43/53 (81%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           +L +L P+E+ I++LR+G +DG   +LSEIG++FGLSRER+ Q++ RA+ +L+
Sbjct: 253 MLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLR 305

[227][TOP]
>UniRef100_Q0S1J1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
           RepID=Q0S1J1_RHOSR
          Length = 457

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 391 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 450

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 451 VLRDYLD 457

[228][TOP]
>UniRef100_C0ZYT9 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis PR4
           RepID=C0ZYT9_RHOE4
          Length = 452

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 386 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 445

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 446 VLRDYLD 452

[229][TOP]
>UniRef100_B8ZQV8 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
           RepID=B8ZQV8_MYCLB
          Length = 574

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 508 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 567

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 568 VLRDYLD 574

[230][TOP]
>UniRef100_B1VTL5 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
           griseus NBRC 13350 RepID=B1VTL5_STRGG
          Length = 333

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ KL  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LK+     
Sbjct: 268 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 327

Query: 374 GLDAYA 357
           G DA A
Sbjct: 328 GFDAAA 333

[231][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
           19977 RepID=B1MCY5_MYCA9
          Length = 323

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 49/68 (72%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V +VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E   + +L+    
Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDR 314

Query: 380 SQGLDAYA 357
           ++ L +YA
Sbjct: 315 AERLRSYA 322

[232][TOP]
>UniRef100_B1MCW6 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
           19977 RepID=B1MCW6_MYCA9
          Length = 467

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 401 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 460

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 461 VLRDYLD 467

[233][TOP]
>UniRef100_A4TCR0 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
           RepID=A4TCR0_MYCGI
          Length = 488

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 422 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 481

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 482 VLRDYLD 488

[234][TOP]
>UniRef100_A3PYI3 RNA polymerase sigma factor n=1 Tax=Mycobacterium sp. JLS
           RepID=A3PYI3_MYCSJ
          Length = 480

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 414 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 473

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 474 VLRDYLD 480

[235][TOP]
>UniRef100_A1UF21 RNA polymerase sigma factor n=2 Tax=Mycobacterium
           RepID=A1UF21_MYCSK
          Length = 480

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 414 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 473

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 474 VLRDYLD 480

[236][TOP]
>UniRef100_A1T7X4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
           RepID=A1T7X4_MYCVP
          Length = 478

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 412 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 471

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 472 VLRDYLD 478

[237][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
           RepID=A1T7W4_MYCVP
          Length = 329

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/65 (44%), Positives = 46/65 (70%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E   + +L+    +  
Sbjct: 264 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 323

Query: 371 LDAYA 357
           L +YA
Sbjct: 324 LRSYA 328

[238][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
           MC2 155 RepID=A0QVZ5_MYCS2
          Length = 319

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/65 (44%), Positives = 46/65 (70%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E   + +L+    +  
Sbjct: 254 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 313

Query: 371 LDAYA 357
           L +YA
Sbjct: 314 LRSYA 318

[239][TOP]
>UniRef100_A0QIN4 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium 104
           RepID=A0QIN4_MYCA1
          Length = 496

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 430 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 489

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 490 VLRDYLD 496

[240][TOP]
>UniRef100_Q9S5K3 RNA polymerase sigma factor n=1 Tax=Mycobacterium leprae
           RepID=Q9S5K3_MYCLE
          Length = 576

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 510 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 569

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 570 VLRDYLD 576

[241][TOP]
>UniRef100_Q8VM92 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians
           RepID=Q8VM92_RHOFA
          Length = 474

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 408 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 467

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 468 VLRDYLD 474

[242][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
           PSU-1 RepID=Q6J2R2_OENOB
          Length = 465

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 27/53 (50%), Positives = 40/53 (75%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393
           VL  L  +E  ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL +L+
Sbjct: 399 VLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLR 451

[243][TOP]
>UniRef100_A0QW02 RNA polymerase sigma factor n=2 Tax=Mycobacterium smegmatis
           RepID=A0QW02_MYCS2
          Length = 466

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 400 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 459

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 460 VLRDYLD 466

[244][TOP]
>UniRef100_C9N6U7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Streptomyces flavogriseus ATCC 33331
           RepID=C9N6U7_9ACTO
          Length = 333

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +++ KL  +   II++R+G EDG ER+L+E+G+  GL+RERI Q+E  AL  LK+     
Sbjct: 268 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 327

Query: 374 GLDAYA 357
           G DA A
Sbjct: 328 GFDAAA 333

[245][TOP]
>UniRef100_C7MYK8 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Saccharomonospora
           viridis DSM 43017 RepID=C7MYK8_SACVD
          Length = 439

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 373 SVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 432

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 433 VLRDYLD 439

[246][TOP]
>UniRef100_C1B3C8 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus
           RepID=C1B3C8_RHOOB
          Length = 323

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 49/68 (72%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V  VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E   + +L++   
Sbjct: 255 VRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314

Query: 380 SQGLDAYA 357
           ++ L +YA
Sbjct: 315 AERLRSYA 322

[247][TOP]
>UniRef100_C1B466 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus
           RepID=C1B466_RHOOB
          Length = 457

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 391 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 450

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 451 VLRDYLD 457

[248][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
           RepID=C4VL08_9LACO
          Length = 364

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/66 (43%), Positives = 45/66 (68%)
 Frame = -2

Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372
           VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +L+    S  
Sbjct: 299 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 358

Query: 371 LDAYAD 354
           L  + D
Sbjct: 359 LKDFLD 364

[249][TOP]
>UniRef100_C3JLL5 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis SK121
           RepID=C3JLL5_RHOER
          Length = 430

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 46/67 (68%)
 Frame = -2

Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375
           +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++ + +L+    SQ
Sbjct: 364 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 423

Query: 374 GLDAYAD 354
            L  Y D
Sbjct: 424 VLRDYLD 430

[250][TOP]
>UniRef100_C0ZYS7 RNA polymerase sigma factor n=2 Tax=Rhodococcus erythropolis
           RepID=C0ZYS7_RHOE4
          Length = 323

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 29/68 (42%), Positives = 49/68 (72%)
 Frame = -2

Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381
           V +VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E   + +L+    
Sbjct: 255 VRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRVGDR 314

Query: 380 SQGLDAYA 357
           ++ L +YA
Sbjct: 315 AEKLRSYA 322