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[1][TOP] >UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis RepID=B9S0J0_RICCO Length = 548 Score = 108 bits (271), Expect = 2e-22 Identities = 49/74 (66%), Positives = 66/74 (89%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +HVL++LN L P+ER+IIRLR+G EDG+++SLSEIG +FGLS+ER+ QLE+RALY+LK+C Sbjct: 475 KHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLESRALYKLKQC 534 Query: 386 LVSQGLDAYADKLI 345 L S GL+AYAD L+ Sbjct: 535 LASHGLEAYADLLV 548 [2][TOP] >UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR Length = 535 Score = 103 bits (257), Expect = 9e-21 Identities = 49/73 (67%), Positives = 62/73 (84%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +H+ +LN L KERRIIRLRFG EDG+++SLSEIG +FGLS+ER+ QLE+RALY+LK+C Sbjct: 462 KHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQC 521 Query: 386 LVSQGLDAYADKL 348 + S GLDAYAD L Sbjct: 522 VGSHGLDAYADLL 534 [3][TOP] >UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1 Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH Length = 487 Score = 102 bits (254), Expect = 2e-20 Identities = 50/73 (68%), Positives = 62/73 (84%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RALYRLK+ + Sbjct: 415 HVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 474 Query: 383 VSQGLDAYADKLI 345 S GL AYAD L+ Sbjct: 475 NSHGLHAYADLLV 487 [4][TOP] >UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LD95_ARATH Length = 547 Score = 102 bits (254), Expect = 2e-20 Identities = 50/73 (68%), Positives = 62/73 (84%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+RALYRLK+ + Sbjct: 475 HVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNM 534 Query: 383 VSQGLDAYADKLI 345 S GL AYAD L+ Sbjct: 535 NSHGLHAYADLLV 547 [5][TOP] >UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI0001983B83 Length = 561 Score = 96.3 bits (238), Expect = 1e-18 Identities = 46/74 (62%), Positives = 59/74 (79%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RAL++LK+C Sbjct: 488 QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 547 Query: 386 LVSQGLDAYADKLI 345 L S GL++Y D L+ Sbjct: 548 LSSHGLESYTDLLV 561 [6][TOP] >UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PT61_VITVI Length = 284 Score = 96.3 bits (238), Expect = 1e-18 Identities = 46/74 (62%), Positives = 59/74 (79%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +HV N+L+ L PKERRIIRLRFG DG R+LSEIG +FG S+ER+ QLE RAL++LK+C Sbjct: 211 QHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQC 270 Query: 386 LVSQGLDAYADKLI 345 L S GL++Y D L+ Sbjct: 271 LSSHGLESYTDLLV 284 [7][TOP] >UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q84LK8_ORYSJ Length = 572 Score = 73.6 bits (179), Expect = 1e-11 Identities = 37/73 (50%), Positives = 49/73 (67%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRAL +LK+ Sbjct: 499 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 558 Query: 386 LVSQGLDAYADKL 348 QG D Y D L Sbjct: 559 ASLQGFDVYFDLL 571 [8][TOP] >UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group RepID=B8BC85_ORYSI Length = 537 Score = 73.6 bits (179), Expect = 1e-11 Identities = 37/73 (50%), Positives = 49/73 (67%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRAL +LK+ Sbjct: 464 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 523 Query: 386 LVSQGLDAYADKL 348 QG D Y D L Sbjct: 524 ASLQGFDVYFDLL 536 [9][TOP] >UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=A3BR19_ORYSJ Length = 497 Score = 73.6 bits (179), Expect = 1e-11 Identities = 37/73 (50%), Positives = 49/73 (67%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + V + L L P+E+ II RFG DGE ++L IG++FGLS+ERI QL+NRAL +LK+ Sbjct: 424 QQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQNRALEKLKRS 483 Query: 386 LVSQGLDAYADKL 348 QG D Y D L Sbjct: 484 ASLQGFDVYFDLL 496 [10][TOP] >UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA Length = 361 Score = 68.9 bits (167), Expect = 2e-10 Identities = 32/66 (48%), Positives = 48/66 (72%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VLN L P+E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 296 VLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 355 Query: 371 LDAYAD 354 L Y + Sbjct: 356 LKDYLE 361 [11][TOP] >UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1K5_THERP Length = 340 Score = 68.9 bits (167), Expect = 2e-10 Identities = 29/70 (41%), Positives = 49/70 (70%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 R + +L L P+ER +++LR+G DGE R+L+E+G++ G+SRER+ Q+EN AL +L++ Sbjct: 269 RDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRRI 328 Query: 386 LVSQGLDAYA 357 + + YA Sbjct: 329 ARERLAEYYA 338 [12][TOP] >UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1Z3_NATTJ Length = 360 Score = 68.6 bits (166), Expect = 3e-10 Identities = 31/66 (46%), Positives = 50/66 (75%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L P+E++++RLRFG +DG+ R+L E+G+ FG++RERI Q+E +AL +L+ + S+ Sbjct: 295 VLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRKLRHPMRSKR 354 Query: 371 LDAYAD 354 L Y D Sbjct: 355 LKDYLD 360 [13][TOP] >UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GBZ7_9FIRM Length = 372 Score = 68.6 bits (166), Expect = 3e-10 Identities = 30/67 (44%), Positives = 49/67 (73%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L P+E++++ LRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ + S+ Sbjct: 306 DVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRKLRHPMRSK 365 Query: 374 GLDAYAD 354 L Y + Sbjct: 366 RLKDYLE 372 [14][TOP] >UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA Length = 525 Score = 68.6 bits (166), Expect = 3e-10 Identities = 32/65 (49%), Positives = 47/65 (72%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +LK+ +Q Sbjct: 449 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQ 508 Query: 374 GLDAY 360 L Y Sbjct: 509 VLQEY 513 [15][TOP] >UniRef100_B1VYB1 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VYB1_STRGG Length = 363 Score = 68.2 bits (165), Expect = 4e-10 Identities = 32/70 (45%), Positives = 48/70 (68%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G EDG R+L EIG IFG++RERI Q+E++ L RL+ Sbjct: 294 HLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDHA 353 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 354 FADQLRGYLD 363 [16][TOP] >UniRef100_C5D2W5 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70 RepID=C5D2W5_GEOSW Length = 831 Score = 67.8 bits (164), Expect = 5e-10 Identities = 32/54 (59%), Positives = 41/54 (75%) Frame = -2 Query: 533 PKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 P++ +II RFGF GEE +L EIGE+FG+SRERI Q+EN+AL LKKC +G Sbjct: 775 PRDWKIILYRFGFMTGEEMTLQEIGELFGVSRERIRQIENKALKHLKKCPALKG 828 [17][TOP] >UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=C4CIZ0_9CHLR Length = 390 Score = 67.8 bits (164), Expect = 5e-10 Identities = 34/69 (49%), Positives = 47/69 (68%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 + + L+KL +ERRII LRFG EDG+ R+L E+G FG++RERI Q+E +AL +L+ Sbjct: 322 ISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPTY 381 Query: 380 SQGLDAYAD 354 S L Y D Sbjct: 382 SHRLRGYLD 390 [18][TOP] >UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces roseosporus NRRL 15998 RepID=UPI0001AEF979 Length = 363 Score = 67.4 bits (163), Expect = 7e-10 Identities = 31/71 (43%), Positives = 49/71 (69%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L RL+ Sbjct: 293 QHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSRLRDH 352 Query: 386 LVSQGLDAYAD 354 + L Y D Sbjct: 353 AFADQLRGYLD 363 [19][TOP] >UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440 RepID=A4X4X9_SALTO Length = 332 Score = 67.4 bits (163), Expect = 7e-10 Identities = 33/70 (47%), Positives = 48/70 (68%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + + VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L++L+ Sbjct: 262 QEMCGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLHKLRAP 321 Query: 386 LVSQGLDAYA 357 +Q L+AYA Sbjct: 322 ERAQRLEAYA 331 [20][TOP] >UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74 RepID=B5GE88_9ACTO Length = 338 Score = 67.4 bits (163), Expect = 7e-10 Identities = 30/71 (42%), Positives = 50/71 (70%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 RH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L+ Sbjct: 268 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 327 Query: 386 LVSQGLDAYAD 354 + + L Y D Sbjct: 328 VFADQLRGYLD 338 [21][TOP] >UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens RepID=Q0SRH3_CLOPS Length = 366 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 358 SKKLKDYLD 366 [22][TOP] >UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani RepID=Q892T0_CLOTE Length = 366 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 358 SKKLKDYLD 366 [23][TOP] >UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum RepID=Q67RX0_SYMTH Length = 388 Score = 67.0 bits (162), Expect = 9e-10 Identities = 30/66 (45%), Positives = 47/66 (71%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E +++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 323 VLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKK 382 Query: 371 LDAYAD 354 L Y + Sbjct: 383 LKDYLE 388 [24][TOP] >UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMC7_CLOBB Length = 374 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 306 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 365 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 366 SKKLKDYLD 374 [25][TOP] >UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LRQ7_CLOB8 Length = 376 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 308 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 367 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 368 SKKLKDYLD 376 [26][TOP] >UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri RepID=A5N6R2_CLOK5 Length = 354 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 286 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 345 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 346 SKKLKDYLD 354 [27][TOP] >UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT RepID=A0Q1P4_CLONN Length = 368 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 360 SKKLKDYLD 368 [28][TOP] >UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens RepID=Q0TNV3_CLOP1 Length = 366 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 298 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 357 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 358 SKKLKDYLD 366 [29][TOP] >UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PTX7_9CLOT Length = 361 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 293 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 352 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 353 SKKLKDYLD 361 [30][TOP] >UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRR6_CLOBO Length = 368 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 360 SKKLKDYLD 368 [31][TOP] >UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E RepID=B2V2K8_CLOBA Length = 374 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 306 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 365 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 366 SKKLKDYLD 374 [32][TOP] >UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IAB3_9CLOT Length = 370 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 302 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 361 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 362 SKKLKDYLD 370 [33][TOP] >UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum RepID=B1QWY9_CLOBU Length = 369 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 301 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 360 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 361 SKKLKDYLD 369 [34][TOP] >UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum RepID=A5I618_CLOBH Length = 361 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 293 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 352 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 353 SKKLKDYLD 361 [35][TOP] >UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BDC8_CLOBO Length = 368 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 300 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 359 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 360 SKKLKDYLD 368 [36][TOP] >UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum RepID=RPOD_CLOAB Length = 378 Score = 67.0 bits (162), Expect = 9e-10 Identities = 31/69 (44%), Positives = 48/69 (69%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +L +LN L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 310 LLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 369 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 370 SKKLKDYLD 378 [37][TOP] >UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B55E40 Length = 201 Score = 66.6 bits (161), Expect = 1e-09 Identities = 30/71 (42%), Positives = 49/71 (69%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 RH+ +VL+ L +ER++++LR+G +DG R+L EIG +FG++RERI Q+E + L +L+ Sbjct: 131 RHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAKTLAKLRSH 190 Query: 386 LVSQGLDAYAD 354 + L Y D Sbjct: 191 AFADQLRGYLD 201 [38][TOP] >UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YT68_NOCFA Length = 322 Score = 66.6 bits (161), Expect = 1e-09 Identities = 32/68 (47%), Positives = 49/68 (72%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V +VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+K Sbjct: 254 VRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRKGER 313 Query: 380 SQGLDAYA 357 + L AYA Sbjct: 314 ADRLRAYA 321 [39][TOP] >UniRef100_O67437 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus RepID=O67437_AQUAE Length = 310 Score = 66.6 bits (161), Expect = 1e-09 Identities = 32/66 (48%), Positives = 47/66 (71%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + + ++L+KL KER++I LRFG + E ++L EIGEI GLSRER+ QLE RAL +L+ Sbjct: 240 KEIDDLLSKLTDKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRALRKLRSL 299 Query: 386 LVSQGL 369 + + L Sbjct: 300 AMKRHL 305 [40][TOP] >UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NG03_ROSCS Length = 541 Score = 66.6 bits (161), Expect = 1e-09 Identities = 32/69 (46%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L+ + Sbjct: 473 VEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRL 532 Query: 380 SQGLDAYAD 354 + L Y + Sbjct: 533 GKKLRDYLE 541 [41][TOP] >UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UQ16_ROSS1 Length = 541 Score = 66.6 bits (161), Expect = 1e-09 Identities = 32/69 (46%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V VLN+L +ERR+++LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L+ + Sbjct: 473 VEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVKALRKLRHPRL 532 Query: 380 SQGLDAYAD 354 + L Y + Sbjct: 533 GKKLRDYLE 541 [42][TOP] >UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B RepID=C5RE54_CLOCL Length = 363 Score = 66.6 bits (161), Expect = 1e-09 Identities = 31/69 (44%), Positives = 48/69 (69%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++NVL+ L P+E +++RLRFG +DG R+L E+G F ++RERI Q+E +AL +L+ Sbjct: 295 LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSR 354 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 355 SKKLKDYLD 363 [43][TOP] >UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RYI5_OSTLU Length = 344 Score = 66.6 bits (161), Expect = 1e-09 Identities = 29/55 (52%), Positives = 43/55 (78%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +LK+ Sbjct: 263 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALRKLKQ 317 [44][TOP] >UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor n=1 Tax=Vitis vinifera RepID=UPI000198388B Length = 578 Score = 65.9 bits (159), Expect = 2e-09 Identities = 31/64 (48%), Positives = 45/64 (70%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A +LK ++ Sbjct: 512 VLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKH 571 Query: 371 LDAY 360 L Y Sbjct: 572 LQQY 575 [45][TOP] >UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZY7_9FIRM Length = 447 Score = 65.9 bits (159), Expect = 2e-09 Identities = 31/69 (44%), Positives = 50/69 (72%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +L VLN L +ER +++LRFG DG++R+L E+G+ F ++RERI Q+E++A+ +LK + Sbjct: 379 LLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKLKHPNM 438 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 439 SKKLRDYID 447 [46][TOP] >UniRef100_C6W8L5 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W8L5_ACTMD Length = 349 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/66 (42%), Positives = 47/66 (71%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R + +L+ S+G Sbjct: 284 VLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVYGVTRERIRQIESRTMAKLQHPARSRG 343 Query: 371 LDAYAD 354 L+ Y D Sbjct: 344 LEGYLD 349 [47][TOP] >UniRef100_A8UY45 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY45_9AQUI Length = 309 Score = 65.9 bits (159), Expect = 2e-09 Identities = 30/66 (45%), Positives = 47/66 (71%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + + ++L+KL KERR++ LRFG + E ++L EIG+I G+SRER+ QLE RAL +L+ Sbjct: 239 KEIYDLLDKLPEKERRVVELRFGLKGNEPKTLREIGDILGVSRERVRQLETRALRKLRSL 298 Query: 386 LVSQGL 369 + + L Sbjct: 299 AMKRHL 304 [48][TOP] >UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SFN0_9FIRM Length = 360 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/72 (44%), Positives = 49/72 (68%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 R +L+VL L P+E R+I LRFG EDG R+L E+G+ F ++RER+ Q+E +AL +L+ Sbjct: 289 RELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKALRKLRHP 348 Query: 386 LVSQGLDAYADK 351 ++ L Y D+ Sbjct: 349 SRAKLLRDYLDE 360 [49][TOP] >UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO Length = 595 Score = 65.9 bits (159), Expect = 2e-09 Identities = 28/55 (50%), Positives = 43/55 (78%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +L++ Sbjct: 519 NVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 573 [50][TOP] >UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus communis RepID=B9SDA3_RICCO Length = 569 Score = 65.9 bits (159), Expect = 2e-09 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VLN L P+E +++R RFG EDG ++L EIGEI G+SRERI Q+E+ A +LK ++ Sbjct: 503 VLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQ 562 Query: 371 LDAY 360 L Y Sbjct: 563 LKQY 566 [51][TOP] >UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7PSL8_VITVI Length = 235 Score = 65.9 bits (159), Expect = 2e-09 Identities = 31/64 (48%), Positives = 45/64 (70%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VLN L P+E+++IR R+G EDG ++L EIGE+ G+SRERI Q+E+ A +LK ++ Sbjct: 169 VLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKH 228 Query: 371 LDAY 360 L Y Sbjct: 229 LQQY 232 [52][TOP] >UniRef100_UPI0001AEE245 RNA polymerase sigma factor n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AEE245 Length = 357 Score = 65.5 bits (158), Expect = 3e-09 Identities = 29/71 (40%), Positives = 50/71 (70%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL++ Sbjct: 287 QHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREH 346 Query: 386 LVSQGLDAYAD 354 + L Y + Sbjct: 347 TAAGQLRGYLE 357 [53][TOP] >UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus RepID=Q9R5W0_STRGR Length = 357 Score = 65.5 bits (158), Expect = 3e-09 Identities = 29/71 (40%), Positives = 50/71 (70%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +H+ VL L +ER++++LR+GF+DG R+L EIG +FG++RER+ Q+E++ L RL++ Sbjct: 287 QHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESKTLRRLREH 346 Query: 386 LVSQGLDAYAD 354 + L Y + Sbjct: 347 TAAGQLRGYLE 357 [54][TOP] >UniRef100_Q8KUI1 RNA polymerase sigma factor n=1 Tax=Actinosynnema pretiosum subsp. auranticum RepID=Q8KUI1_ACTPA Length = 348 Score = 65.5 bits (158), Expect = 3e-09 Identities = 28/66 (42%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E ++R+R+GF DG +L E+G ++G++RERI Q+E+R + +L+ S+G Sbjct: 283 VLETLTPREAGVVRMRYGFPDGVLHTLDEVGRVYGVTRERIRQIESRTMAKLQHPARSRG 342 Query: 371 LDAYAD 354 L+ Y D Sbjct: 343 LEGYLD 348 [55][TOP] >UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum RepID=C1F1D9_ACIC5 Length = 597 Score = 65.5 bits (158), Expect = 3e-09 Identities = 31/66 (46%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E R+I++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+ S+ Sbjct: 527 VLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEAKALRKLRHPSRSRK 586 Query: 371 LDAYAD 354 L A+ D Sbjct: 587 LRAFVD 592 [56][TOP] >UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H3D6_9FIRM Length = 359 Score = 65.5 bits (158), Expect = 3e-09 Identities = 29/58 (50%), Positives = 43/58 (74%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 R + NVL L P+E R++ LRFG EDG+ R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 288 RELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALRKLR 345 [57][TOP] >UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RDH0_9ACTO Length = 334 Score = 65.5 bits (158), Expect = 3e-09 Identities = 33/65 (50%), Positives = 45/65 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+ +Q Sbjct: 269 VLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLRAPERAQR 328 Query: 371 LDAYA 357 L+AYA Sbjct: 329 LEAYA 333 [58][TOP] >UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJJ6_9BACT Length = 579 Score = 65.5 bits (158), Expect = 3e-09 Identities = 30/58 (51%), Positives = 43/58 (74%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 + V VL L P+E R+IRLRFG +DG R+L E+G IF ++RERI Q+E++AL +L+ Sbjct: 504 KQVDEVLKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLR 561 [59][TOP] >UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MUC7_9CHLO Length = 587 Score = 65.5 bits (158), Expect = 3e-09 Identities = 28/55 (50%), Positives = 43/55 (78%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 NVLN L P+ER ++RLR+G +DG ++L EIG +F ++RERI Q+E +AL +L++ Sbjct: 504 NVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRKLRQ 558 [60][TOP] >UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195 RepID=Q3Z904_DEHE1 Length = 520 Score = 65.1 bits (157), Expect = 4e-09 Identities = 31/66 (46%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+ Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514 Query: 371 LDAYAD 354 L Y + Sbjct: 515 LKDYLE 520 [61][TOP] >UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWU4_SYNWW Length = 358 Score = 65.1 bits (157), Expect = 4e-09 Identities = 30/70 (42%), Positives = 48/70 (68%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ +LN L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ Sbjct: 289 HLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPS 348 Query: 383 VSQGLDAYAD 354 S+ L Y + Sbjct: 349 RSKKLKDYIE 358 [62][TOP] >UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I6N1_CLOCE Length = 359 Score = 65.1 bits (157), Expect = 4e-09 Identities = 30/69 (43%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 291 LIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 350 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 351 SKKLKDYLD 359 [63][TOP] >UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA Length = 360 Score = 65.1 bits (157), Expect = 4e-09 Identities = 31/65 (47%), Positives = 45/65 (69%) Frame = -2 Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369 LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL RL+ V Q L Sbjct: 296 LNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRL 355 Query: 368 DAYAD 354 +Y D Sbjct: 356 HSYLD 360 [64][TOP] >UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205 RepID=A8M7Z0_SALAI Length = 328 Score = 65.1 bits (157), Expect = 4e-09 Identities = 34/70 (48%), Positives = 46/70 (65%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + V VL L +E+ +IRLRFG +DG +R+L E+G FGLSRERI Q+E L +L+ Sbjct: 258 QEVRGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLRAP 317 Query: 386 LVSQGLDAYA 357 +Q L AYA Sbjct: 318 ERAQRLAAYA 327 [65][TOP] >UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides RepID=A5FRQ7_DEHSB Length = 520 Score = 65.1 bits (157), Expect = 4e-09 Identities = 31/66 (46%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+ Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514 Query: 371 LDAYAD 354 L Y + Sbjct: 515 LKDYLE 520 [66][TOP] >UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus RepID=P71106_CHLAU Length = 346 Score = 65.1 bits (157), Expect = 4e-09 Identities = 31/65 (47%), Positives = 45/65 (69%) Frame = -2 Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369 LN+L +ER+I++LR+G DG+ R+L E+G FG++RER Q+E AL RL+ V Q L Sbjct: 282 LNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERTRQIEAEALRRLRHPSVGQRL 341 Query: 368 DAYAD 354 +Y D Sbjct: 342 HSYLD 346 [67][TOP] >UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNX0_9FIRM Length = 373 Score = 65.1 bits (157), Expect = 4e-09 Identities = 30/67 (44%), Positives = 48/67 (71%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 307 DVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSR 366 Query: 374 GLDAYAD 354 L + D Sbjct: 367 KLKDFLD 373 [68][TOP] >UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS RepID=A8CRQ1_9CHLR Length = 520 Score = 65.1 bits (157), Expect = 4e-09 Identities = 31/66 (46%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+ERR+++LRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+ Sbjct: 455 VLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRK 514 Query: 371 LDAYAD 354 L Y + Sbjct: 515 LKDYLE 520 [69][TOP] >UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1 Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA Length = 404 Score = 65.1 bits (157), Expect = 4e-09 Identities = 26/57 (45%), Positives = 45/57 (78%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 + ++N L P+E+ ++R+R+G +DGE R+L EIG IF ++RER+ Q+E RAL++L++ Sbjct: 324 ISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHKLRQ 380 [70][TOP] >UniRef100_UPI0001B56202 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C RepID=UPI0001B56202 Length = 381 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 312 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 371 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 372 FADQLRGYLD 381 [71][TOP] >UniRef100_UPI0001B51C3A RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B51C3A Length = 438 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 369 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 428 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 429 FADQLRGYLD 438 [72][TOP] >UniRef100_UPI0001B4B283 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4B283 Length = 444 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 375 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 434 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 435 FADQLRGYLD 444 [73][TOP] >UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694293 Length = 367 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/67 (44%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 301 HVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360 Query: 374 GLDAYAD 354 L + D Sbjct: 361 RLKDFLD 367 [74][TOP] >UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10UV2_TRIEI Length = 386 Score = 64.7 bits (156), Expect = 5e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 +VLN L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 320 SVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 373 [75][TOP] >UniRef100_A8L6K9 RNA polymerase sigma factor n=1 Tax=Frankia sp. EAN1pec RepID=A8L6K9_FRASN Length = 423 Score = 64.7 bits (156), Expect = 5e-09 Identities = 31/67 (46%), Positives = 44/67 (65%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+ Sbjct: 357 NVLGALNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 416 Query: 374 GLDAYAD 354 L + D Sbjct: 417 RLREFLD 423 [76][TOP] >UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC 27405 RepID=A3DDV0_CLOTH Length = 358 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/69 (43%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 290 LVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 349 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 350 SKKLKDYLD 358 [77][TOP] >UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZAW9_STRSC Length = 387 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 318 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 377 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 378 FADQLRGYLD 387 [78][TOP] >UniRef100_C9N712 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9N712_9ACTO Length = 358 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 48/70 (68%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G +DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 289 HLEVVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLDKLRGHA 348 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 349 FADQLRGYLD 358 [79][TOP] >UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM Length = 358 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/69 (43%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 290 LVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 349 Query: 380 SQGLDAYAD 354 S+ L Y D Sbjct: 350 SKKLKDYLD 358 [80][TOP] >UniRef100_B5HVY1 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HVY1_9ACTO Length = 374 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 305 HLEAVLSTLGERERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 364 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 365 FADQLRGYLD 374 [81][TOP] >UniRef100_B5GQH3 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GQH3_STRCL Length = 385 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 316 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 375 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 376 FADQLRGYLD 385 [82][TOP] >UniRef100_B4V476 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1 RepID=B4V476_9ACTO Length = 362 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 293 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 352 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 353 FADQLRGYLD 362 [83][TOP] >UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE Length = 541 Score = 64.7 bits (156), Expect = 5e-09 Identities = 29/64 (45%), Positives = 45/64 (70%) Frame = -2 Query: 539 LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAY 360 L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+AL +L+ + +QG Y Sbjct: 477 LSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFHVY 536 Query: 359 ADKL 348 D L Sbjct: 537 FDLL 540 [84][TOP] >UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FJ30_MAIZE Length = 541 Score = 64.7 bits (156), Expect = 5e-09 Identities = 29/64 (45%), Positives = 45/64 (70%) Frame = -2 Query: 539 LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAY 360 L P+E+ II RFG DG+ ++L IG+++GLS+ERI Q++N+AL +L+ + +QG Y Sbjct: 477 LSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQNKALDKLRNSISAQGFHVY 536 Query: 359 ADKL 348 D L Sbjct: 537 FDLL 540 [85][TOP] >UniRef100_P27785 RNA polymerase sigma factor rpoD n=1 Tax=Streptomyces aureofaciens RepID=RPOD_STRAU Length = 317 Score = 64.7 bits (156), Expect = 5e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 248 HLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 307 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 308 FADQLRGYLD 317 [86][TOP] >UniRef100_UPI0001B4E713 RNA polymerase principal sigma factor n=1 Tax=Streptomyces lividans TK24 RepID=UPI0001B4E713 Length = 365 Score = 64.3 bits (155), Expect = 6e-09 Identities = 29/71 (40%), Positives = 48/71 (67%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L+ Sbjct: 295 QHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 354 Query: 386 LVSQGLDAYAD 354 + L Y D Sbjct: 355 AYADQLRGYLD 365 [87][TOP] >UniRef100_UPI0001B4E11E RNA polymerase principal sigma factor n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4E11E Length = 332 Score = 64.3 bits (155), Expect = 6e-09 Identities = 31/66 (46%), Positives = 45/66 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK S Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 326 Query: 374 GLDAYA 357 G DA A Sbjct: 327 GFDAAA 332 [88][TOP] >UniRef100_UPI0001AF1456 RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF1456 Length = 430 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 361 HLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 420 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 421 FADQLRGYLD 430 [89][TOP] >UniRef100_Q82BM5 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis RepID=Q82BM5_STRAW Length = 389 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/70 (42%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG IFG++RERI Q+E++ L +L+ Sbjct: 320 HLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHA 379 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 380 FADQLRGYLD 389 [90][TOP] >UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24T06_DESHY Length = 367 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 302 VLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 361 Query: 371 LDAYAD 354 L Y + Sbjct: 362 LKDYLE 367 [91][TOP] >UniRef100_Q0RDY7 RNA polymerase sigma factor n=1 Tax=Frankia alni ACN14a RepID=Q0RDY7_FRAAA Length = 373 Score = 64.3 bits (155), Expect = 6e-09 Identities = 31/67 (46%), Positives = 44/67 (65%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+ Sbjct: 307 NVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 366 Query: 374 GLDAYAD 354 L + D Sbjct: 367 RLREFLD 373 [92][TOP] >UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM Length = 432 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/68 (44%), Positives = 47/68 (69%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +L+ S+ Sbjct: 362 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421 Query: 374 GLDAYADK 351 L + D+ Sbjct: 422 QLKDFMDE 429 [93][TOP] >UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZ85_THERP Length = 369 Score = 64.3 bits (155), Expect = 6e-09 Identities = 32/65 (49%), Positives = 46/65 (70%) Frame = -2 Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGL 369 L++L +ERRII LR+G EDG+ R+L E+G FG++RERI Q+E +AL +L+ S+ L Sbjct: 305 LSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPSCSRFL 364 Query: 368 DAYAD 354 Y D Sbjct: 365 RGYLD 369 [94][TOP] >UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FTY1_DESHD Length = 372 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 307 VLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 366 Query: 371 LDAYAD 354 L Y + Sbjct: 367 LKDYLE 372 [95][TOP] >UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDV7_CYAP7 Length = 376 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 310 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 363 [96][TOP] >UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WS32_CYAA5 Length = 416 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 [97][TOP] >UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843 RepID=B0JGK3_MICAN Length = 416 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 [98][TOP] >UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4B0_HERA2 Length = 400 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/56 (50%), Positives = 45/56 (80%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 V VL++L +E+R+++LRFG EDG +R+L E+G+ FG++RERI Q+E +AL +L+ Sbjct: 332 VAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKALRKLR 387 [99][TOP] >UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium RepID=A1UF13_MYCSK Length = 319 Score = 64.3 bits (155), Expect = 6e-09 Identities = 31/70 (44%), Positives = 50/70 (71%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 RHVL L++ +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+ Sbjct: 252 RHVLATLDE---REQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNG 308 Query: 386 LVSQGLDAYA 357 + L +YA Sbjct: 309 ERADRLRSYA 318 [100][TOP] >UniRef100_Q8GGT8 RNA polymerase sigma factor n=1 Tax=Frankia sp. ACN14a RepID=Q8GGT8_9ACTO Length = 385 Score = 64.3 bits (155), Expect = 6e-09 Identities = 31/67 (46%), Positives = 44/67 (65%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+ Sbjct: 319 NVLGGLNPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 378 Query: 374 GLDAYAD 354 L + D Sbjct: 379 RLREFLD 385 [101][TOP] >UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501 RepID=Q4C7J7_CROWT Length = 414 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 348 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 401 [102][TOP] >UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece RepID=C7QR23_CYAP0 Length = 379 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 313 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 366 [103][TOP] >UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC Length = 432 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/68 (44%), Positives = 47/68 (69%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +L+ S+ Sbjct: 362 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421 Query: 374 GLDAYADK 351 L + D+ Sbjct: 422 QLKDFMDE 429 [104][TOP] >UniRef100_B5HKY0 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HKY0_9ACTO Length = 332 Score = 64.3 bits (155), Expect = 6e-09 Identities = 31/66 (46%), Positives = 45/66 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK S Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 326 Query: 374 GLDAYA 357 G DA A Sbjct: 327 GFDAAA 332 [105][TOP] >UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AUJ5_9CHRO Length = 377 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 311 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 364 [106][TOP] >UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820 RepID=B1PVV9_MICAE Length = 416 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 [107][TOP] >UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806 RepID=A8YBI5_MICAE Length = 416 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 [108][TOP] >UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110 RepID=A3ISY9_9CHRO Length = 416 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 [109][TOP] >UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q98RZ3_GUITH Length = 460 Score = 64.3 bits (155), Expect = 6e-09 Identities = 25/55 (45%), Positives = 44/55 (80%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A+ +L++ Sbjct: 359 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 413 [110][TOP] >UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta RepID=Q8S9D0_GUITH Length = 490 Score = 64.3 bits (155), Expect = 6e-09 Identities = 25/55 (45%), Positives = 44/55 (80%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A+ +L++ Sbjct: 376 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430 [111][TOP] >UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens RepID=A9RXT3_PHYPA Length = 579 Score = 64.3 bits (155), Expect = 6e-09 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+ER ++RLRFG +DG ++L EIG+IF ++RERI Q+E +A+ +L++ + Sbjct: 508 VLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSI 567 Query: 371 LDAYAD 354 L Y D Sbjct: 568 LREYLD 573 [112][TOP] >UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP Length = 485 Score = 64.3 bits (155), Expect = 6e-09 Identities = 25/55 (45%), Positives = 44/55 (80%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 NV+N L P+ER ++R+R+G +DG ++L EIG+IF ++RER+ Q+E +A+ +L++ Sbjct: 376 NVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430 [113][TOP] >UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803 RepID=RPOD_SYNY3 Length = 425 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 359 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 412 [114][TOP] >UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa RepID=RPOD_MICAE Length = 416 Score = 64.3 bits (155), Expect = 6e-09 Identities = 28/54 (51%), Positives = 43/54 (79%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 350 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 403 [115][TOP] >UniRef100_P18182 RNA polymerase principal sigma factor hrdA n=1 Tax=Streptomyces coelicolor RepID=HRDA_STRCO Length = 396 Score = 64.3 bits (155), Expect = 6e-09 Identities = 29/71 (40%), Positives = 48/71 (67%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L+ Sbjct: 326 QHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDH 385 Query: 386 LVSQGLDAYAD 354 + L Y D Sbjct: 386 AYADQLRGYLD 396 [116][TOP] >UniRef100_UPI0001B5772B RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces sp. C RepID=UPI0001B5772B Length = 325 Score = 63.9 bits (154), Expect = 8e-09 Identities = 31/66 (46%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 ++L KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+ Sbjct: 260 DLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT 319 Query: 374 GLDAYA 357 G DA A Sbjct: 320 GFDAVA 325 [117][TOP] >UniRef100_Q2J784 RNA polymerase sigma factor n=1 Tax=Frankia sp. CcI3 RepID=Q2J784_FRASC Length = 422 Score = 63.9 bits (154), Expect = 8e-09 Identities = 31/67 (46%), Positives = 44/67 (65%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 NVL L P+ER ++RLRFG DG++ +L+E+G GL+RERI Q+E L L+K V+ Sbjct: 356 NVLGGLSPREREVMRLRFGLADGKQHTLAEVGNRLGLTRERIRQIERDTLRELRKPAVAG 415 Query: 374 GLDAYAD 354 L + D Sbjct: 416 RLREFLD 422 [118][TOP] >UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G4K7_CHLAD Length = 345 Score = 63.9 bits (154), Expect = 8e-09 Identities = 32/71 (45%), Positives = 44/71 (61%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 R + LN+L +ERRII LR+G DG R+L E+G + G++RER Q+E AL RL+ Sbjct: 275 RDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEALRRLRSP 334 Query: 386 LVSQGLDAYAD 354 + Q L Y D Sbjct: 335 EIGQHLRDYLD 345 [119][TOP] >UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IZW2_NOSP7 Length = 332 Score = 63.9 bits (154), Expect = 8e-09 Identities = 28/59 (47%), Positives = 45/59 (76%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 +++ N+L+KL P++R+I+ RFG DG E SL+EIG+ G+SRER+ Q+E +AL L++ Sbjct: 263 QNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVRQIEQQALGSLRR 321 [120][TOP] >UniRef100_Q59815 RNA polymerase sigma factor n=1 Tax=Streptomyces aureofaciens RepID=Q59815_STRAU Length = 325 Score = 63.9 bits (154), Expect = 8e-09 Identities = 31/66 (46%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 ++L KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+ Sbjct: 260 DLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDT 319 Query: 374 GLDAYA 357 G DA A Sbjct: 320 GFDAVA 325 [121][TOP] >UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex degensii KC4 RepID=C9R939_9THEO Length = 369 Score = 63.9 bits (154), Expect = 8e-09 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Frame = -2 Query: 566 RHVLN-VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 R LN VL L P+E++++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L+ Sbjct: 298 REQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRH 357 Query: 389 CLVSQGLDAYAD 354 S+ L Y + Sbjct: 358 PSRSKKLKDYLE 369 [122][TOP] >UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P839_9LACO Length = 380 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/54 (50%), Positives = 42/54 (77%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367 [123][TOP] >UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XU09_9LACO Length = 381 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/54 (50%), Positives = 42/54 (77%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 315 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 368 [124][TOP] >UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBJ7_WEIPA Length = 378 Score = 63.9 bits (154), Expect = 8e-09 Identities = 30/67 (44%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 312 SVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 371 Query: 374 GLDAYAD 354 L + D Sbjct: 372 QLRDFLD 378 [125][TOP] >UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri RepID=C2EX53_LACRE Length = 380 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/54 (50%), Positives = 42/54 (77%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367 [126][TOP] >UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2ESB4_9LACO Length = 380 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/54 (50%), Positives = 42/54 (77%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367 [127][TOP] >UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri RepID=A5VJI3_LACRD Length = 380 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/54 (50%), Positives = 42/54 (77%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367 [128][TOP] >UniRef100_B4VDF5 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1 RepID=B4VDF5_9ACTO Length = 325 Score = 63.9 bits (154), Expect = 8e-09 Identities = 31/66 (46%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 ++L KL + II++R+G +DG ER+L+E+G+ GL+RERI Q+E AL LKK Sbjct: 260 DLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDT 319 Query: 374 GLDAYA 357 G DA A Sbjct: 320 GFDAVA 325 [129][TOP] >UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23 RepID=B3XRX4_LACRE Length = 380 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/54 (50%), Positives = 42/54 (77%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR 367 [130][TOP] >UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPB3_9FIRM Length = 368 Score = 63.9 bits (154), Expect = 8e-09 Identities = 27/53 (50%), Positives = 41/53 (77%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 VL L P+E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ Sbjct: 303 VLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLR 355 [131][TOP] >UniRef100_UPI0001B4B7AF RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4B7AF Length = 412 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/70 (41%), Positives = 47/70 (67%) Frame = -2 Query: 563 HVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCL 384 H+ VL+ L +ER++++LR+G DG R+L EIG +FG++RERI Q+E++ L +L+ Sbjct: 343 HLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRLFGVTRERIRQIESKTLNKLRDHA 402 Query: 383 VSQGLDAYAD 354 + L Y D Sbjct: 403 FADQLRGYLD 412 [132][TOP] >UniRef100_UPI0000DAED90 hypothetical protein Wendoof_01000264 n=1 Tax=Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24 RepID=UPI0000DAED90 Length = 502 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 436 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 490 [133][TOP] >UniRef100_Q8R970 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R970_THETN Length = 372 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 304 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 363 Query: 380 SQGLDAYAD 354 S+ L + D Sbjct: 364 SKKLKDFLD 372 [134][TOP] >UniRef100_Q73FM9 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of Drosophila melanogaster RepID=Q73FM9_WOLPM Length = 642 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 576 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 630 [135][TOP] >UniRef100_C0R506 RNA polymerase sigma factor n=2 Tax=Wolbachia RepID=C0R506_WOLWR Length = 650 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 584 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 638 [136][TOP] >UniRef100_B3CMQ1 RNA polymerase sigma factor n=2 Tax=Wolbachia endosymbiont of Culex quinquefasciatus RepID=B3CMQ1_WOLPP Length = 633 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 567 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 621 [137][TOP] >UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20 RepID=B1MYH4_LEUCK Length = 432 Score = 63.5 bits (153), Expect = 1e-08 Identities = 30/67 (44%), Positives = 45/67 (67%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG EDG R+L E+G +FG++RERI Q+E +AL +L+ S+ Sbjct: 362 SVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSK 421 Query: 374 GLDAYAD 354 L + D Sbjct: 422 QLKDFMD 428 [138][TOP] >UniRef100_Q4ECZ2 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of Drosophila ananassae RepID=Q4ECZ2_9RICK Length = 270 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 204 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 258 [139][TOP] >UniRef100_Q4E857 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of Drosophila simulans RepID=Q4E857_9RICK Length = 183 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 117 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 171 [140][TOP] >UniRef100_C6Q7U2 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter mathranii subsp. mathranii str. A3 RepID=C6Q7U2_9THEO Length = 357 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348 Query: 380 SQGLDAYAD 354 S+ L + D Sbjct: 349 SKKLKDFLD 357 [141][TOP] >UniRef100_C6PMA8 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9 RepID=C6PMA8_9THEO Length = 357 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348 Query: 380 SQGLDAYAD 354 S+ L + D Sbjct: 349 SKKLKDFLD 357 [142][TOP] >UniRef100_C6P8V1 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P8V1_CLOTS Length = 357 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 289 LIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348 Query: 380 SQGLDAYAD 354 S+ L + D Sbjct: 349 SKKLKDFLD 357 [143][TOP] >UniRef100_B0K6Y0 RNA polymerase sigma factor n=6 Tax=Thermoanaerobacter RepID=B0K6Y0_THEPX Length = 357 Score = 63.5 bits (153), Expect = 1e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 +++VL+ L P+E +++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 289 LMDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR 348 Query: 380 SQGLDAYAD 354 S+ L + D Sbjct: 349 SKKLKDFLD 357 [144][TOP] >UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2APA0_TSUPA Length = 330 Score = 63.5 bits (153), Expect = 1e-08 Identities = 30/68 (44%), Positives = 48/68 (70%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L+ Sbjct: 262 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGER 321 Query: 380 SQGLDAYA 357 + L AYA Sbjct: 322 ADRLRAYA 329 [145][TOP] >UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum RepID=B2GBZ9_LACF3 Length = 380 Score = 63.5 bits (153), Expect = 1e-08 Identities = 27/54 (50%), Positives = 41/54 (75%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL+ L +E ++RLRFG +DG R+L E+G +FG++RERI Q+E +AL +L+ Sbjct: 314 NVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLR 367 [146][TOP] >UniRef100_C0F9L6 RNA polymerase sigma factor n=1 Tax=Wolbachia endosymbiont of Muscidifurax uniraptor RepID=C0F9L6_9RICK Length = 669 Score = 63.5 bits (153), Expect = 1e-08 Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGF-EDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 NVL L PKE RI+R+RFG +DG+E +L E+G+IF ++RERI Q+E +AL +LK Sbjct: 603 NVLATLTPKEERILRMRFGLGKDGKEHTLEEVGKIFNVTRERIRQIEAKALRKLK 657 [147][TOP] >UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753 RepID=A7VZA6_9CLOT Length = 365 Score = 63.5 bits (153), Expect = 1e-08 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+ Sbjct: 300 VLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKK 359 Query: 371 LDAYAD 354 L + D Sbjct: 360 LKDFLD 365 [148][TOP] >UniRef100_A7B7L9 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B7L9_RUMGN Length = 297 Score = 63.5 bits (153), Expect = 1e-08 Identities = 30/57 (52%), Positives = 43/57 (75%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 V +L+ L KE++I+RLR+G EDG +L E G+I G++RERI QLE+RAL +L+K Sbjct: 235 VQEMLSTLTEKEQKILRLRYGLEDGNVHTLEETGQILGVTRERIRQLESRALEKLRK 291 [149][TOP] >UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764 Length = 316 Score = 63.2 bits (152), Expect = 1e-08 Identities = 27/53 (50%), Positives = 41/53 (77%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 VL+ L +E ++RLRFG EDG R+L E+G++FG++RERI Q+E +AL +L+ Sbjct: 251 VLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLR 303 [150][TOP] >UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPY6_OCEIH Length = 380 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 314 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 373 Query: 374 GLDAYAD 354 L + D Sbjct: 374 RLKDFLD 380 [151][TOP] >UniRef100_Q82H52 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis RepID=Q82H52_STRAW Length = 331 Score = 63.2 bits (152), Expect = 1e-08 Identities = 30/66 (45%), Positives = 45/66 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L + II++R+G +DG ER+L+E+G+ GL+RERI Q+E AL LKK S Sbjct: 266 DLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARST 325 Query: 374 GLDAYA 357 G DA A Sbjct: 326 GFDAAA 331 [152][TOP] >UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus RepID=Q7NHG5_GLOVI Length = 400 Score = 63.2 bits (152), Expect = 1e-08 Identities = 27/53 (50%), Positives = 42/53 (79%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 VLN L P+ER ++RLR+G +DG ++L EIG++F ++RERI Q+E +AL +L+ Sbjct: 335 VLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLR 387 [153][TOP] >UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WHD0_BACSK Length = 373 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 307 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 366 Query: 374 GLDAYAD 354 L + D Sbjct: 367 RLKDFLD 373 [154][TOP] >UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus JCSC1435 RepID=Q4L6R1_STAHJ Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [155][TOP] >UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1 Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [156][TOP] >UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ Length = 370 Score = 63.2 bits (152), Expect = 1e-08 Identities = 27/53 (50%), Positives = 42/53 (79%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 VL L +E++++RLRFG +DG R+L E+G+IFG++RERI Q+E +AL +L+ Sbjct: 305 VLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLR 357 [157][TOP] >UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z9_EXISA Length = 364 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 298 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 357 Query: 374 GLDAYAD 354 L + D Sbjct: 358 RLKDFLD 364 [158][TOP] >UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E6V2_MACCJ Length = 366 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 300 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 359 Query: 374 GLDAYAD 354 L + D Sbjct: 360 RLKDFMD 366 [159][TOP] >UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DNN2_STACT Length = 369 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 303 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 362 Query: 374 GLDAYAD 354 L + D Sbjct: 363 RLKDFMD 369 [160][TOP] >UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0E4_DICTD Length = 413 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/71 (40%), Positives = 49/71 (69%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + + +LN+L +ER I++LRFG ED + R+L E+G++F ++RERI Q+E +AL RL+ Sbjct: 342 KDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHP 401 Query: 386 LVSQGLDAYAD 354 S+ + Y + Sbjct: 402 SRSKKIKDYLE 412 [161][TOP] >UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YES0_DICT6 Length = 413 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/71 (40%), Positives = 49/71 (69%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 + + +LN+L +ER I++LRFG ED + R+L E+G++F ++RERI Q+E +AL RL+ Sbjct: 342 KDIEELLNELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRRLRHP 401 Query: 386 LVSQGLDAYAD 354 S+ + Y + Sbjct: 402 SRSKKIKDYLE 412 [162][TOP] >UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL80_EXIS2 Length = 361 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 295 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 354 Query: 374 GLDAYAD 354 L + D Sbjct: 355 RLKDFLD 361 [163][TOP] >UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I1U1_DESAP Length = 360 Score = 63.2 bits (152), Expect = 1e-08 Identities = 30/67 (44%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L+ S+ Sbjct: 294 DVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKLRHPSRSK 353 Query: 374 GLDAYAD 354 L Y D Sbjct: 354 KLKDYLD 360 [164][TOP] >UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NGG2_ROSCS Length = 405 Score = 63.2 bits (152), Expect = 1e-08 Identities = 31/67 (46%), Positives = 44/67 (65%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 + L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L +L+ + Sbjct: 339 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 398 Query: 374 GLDAYAD 354 GL Y + Sbjct: 399 GLRGYLE 405 [165][TOP] >UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSG9_ALKMQ Length = 372 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 304 LIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSR 363 Query: 380 SQGLDAYAD 354 S+ L Y + Sbjct: 364 SKKLKDYLE 372 [166][TOP] >UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1 RepID=A5V244_ROSS1 Length = 401 Score = 63.2 bits (152), Expect = 1e-08 Identities = 31/67 (46%), Positives = 44/67 (65%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 + L KL +ERRII+LR+G DG R+L E+G FG++RERI Q+E R L +L+ + Sbjct: 335 SALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEARVLRKLRHPHYGR 394 Query: 374 GLDAYAD 354 GL Y + Sbjct: 395 GLRGYLE 401 [167][TOP] >UniRef100_Q8VM94 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians RepID=Q8VM94_RHOFA Length = 323 Score = 63.2 bits (152), Expect = 1e-08 Identities = 28/65 (43%), Positives = 48/65 (73%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L++ ++ Sbjct: 258 VLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQGDRAEK 317 Query: 371 LDAYA 357 L +YA Sbjct: 318 LRSYA 322 [168][TOP] >UniRef100_P77870 RNA polymerase sigma factor n=1 Tax=Heliobacillus mobilis RepID=P77870_HELMO Length = 333 Score = 63.2 bits (152), Expect = 1e-08 Identities = 30/66 (45%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 268 VLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 327 Query: 371 LDAYAD 354 L Y D Sbjct: 328 LKDYVD 333 [169][TOP] >UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus RepID=O08332_STAAU Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [170][TOP] >UniRef100_C9YWE0 Sigma factor HrdD n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YWE0_STRSC Length = 332 Score = 63.2 bits (152), Expect = 1e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326 Query: 374 GLDAYA 357 G DA A Sbjct: 327 GFDAVA 332 [171][TOP] >UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus A9299 RepID=C8M7C3_STAAU Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [172][TOP] >UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus aureus A6300 RepID=C8LTM9_STAAU Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [173][TOP] >UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus subsp. aureus 68-397 RepID=C8ACF1_STAAU Length = 342 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 276 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 335 Query: 374 GLDAYAD 354 L + D Sbjct: 336 RLKDFMD 342 [174][TOP] >UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [175][TOP] >UniRef100_C7H329 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H329_9FIRM Length = 461 Score = 63.2 bits (152), Expect = 1e-08 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL--K 393 + + L L P+E ++IRLRFG +DG R+L E+G FG++RER+ Q+E +A+ +L + Sbjct: 391 QQINQALKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSR 450 Query: 392 KCL 384 KCL Sbjct: 451 KCL 453 [176][TOP] >UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis W23144 RepID=C5QXG6_STAEP Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [177][TOP] >UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis M23864:W1 RepID=C5QSV2_STAEP Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [178][TOP] >UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603 RepID=C4WCC7_STAWA Length = 367 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 301 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 360 Query: 374 GLDAYAD 354 L + D Sbjct: 361 RLKDFMD 367 [179][TOP] >UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119 RepID=C2M0X4_STAHO Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [180][TOP] >UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14 RepID=B9CVA9_STACP Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [181][TOP] >UniRef100_A8VUB1 RNA polymerase sigma factor n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUB1_9BACI Length = 73 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 7 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 66 Query: 374 GLDAYAD 354 L + D Sbjct: 67 RLKDFLD 73 [182][TOP] >UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZN70_NODSP Length = 327 Score = 63.2 bits (152), Expect = 1e-08 Identities = 28/55 (50%), Positives = 43/55 (78%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 N+L +L P++R+++ LRFG EDG E SL+++GE LSRER+ QLE++AL L++ Sbjct: 262 NLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316 [183][TOP] >UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis RepID=RPOD_STAEQ Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [184][TOP] >UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus subsp. aureus N315 RepID=RPOD_STAAN Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [185][TOP] >UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus RepID=RPOD_STAA8 Length = 368 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 302 DVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSK 361 Query: 374 GLDAYAD 354 L + D Sbjct: 362 RLKDFMD 368 [186][TOP] >UniRef100_P18249 RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces coelicolor RepID=HRDD_STRCO Length = 332 Score = 63.2 bits (152), Expect = 1e-08 Identities = 29/66 (43%), Positives = 45/66 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L P+ II++R+G +DG ER+L+E+G+ GL+RERI Q+E AL LKK Sbjct: 267 DLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326 Query: 374 GLDAYA 357 G +A A Sbjct: 327 GFEAAA 332 [187][TOP] >UniRef100_UPI0001B51744 RNA polymerase principal sigma factor n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B51744 Length = 332 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326 Query: 374 GLDAYA 357 G DA A Sbjct: 327 GFDAAA 332 [188][TOP] >UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN 605 RepID=UPI0001B44D01 Length = 377 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 311 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 370 Query: 374 GLDAYAD 354 L Y D Sbjct: 371 VLRDYLD 377 [189][TOP] >UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF41EF Length = 518 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 452 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 511 Query: 374 GLDAYAD 354 L Y D Sbjct: 512 VLRDYLD 518 [190][TOP] >UniRef100_UPI0001AF13A7 RNA polymerase principal sigma factor n=1 Tax=Streptomyces ghanaensis ATCC 14672 RepID=UPI0001AF13A7 Length = 332 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ +L + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LKK Sbjct: 267 DLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKLARDT 326 Query: 374 GLDAYA 357 G DA A Sbjct: 327 GFDAAA 332 [191][TOP] >UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=UPI0001966A7F Length = 364 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/67 (44%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L P+E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +L+ S+ Sbjct: 298 DVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSK 357 Query: 374 GLDAYAD 354 L + D Sbjct: 358 KLRDFLD 364 [192][TOP] >UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17 RepID=UPI000190610E Length = 530 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 464 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 523 Query: 374 GLDAYAD 354 L Y D Sbjct: 524 VLRDYLD 530 [193][TOP] >UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis 02_1987 RepID=UPI00019014BB Length = 197 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 131 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 190 Query: 374 GLDAYAD 354 L Y D Sbjct: 191 VLRDYLD 197 [194][TOP] >UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S1K1_RHOSR Length = 323 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/68 (42%), Positives = 50/68 (73%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L++ Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314 Query: 380 SQGLDAYA 357 ++ L +YA Sbjct: 315 AERLRSYA 322 [195][TOP] >UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03F68_PEDPA Length = 379 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/66 (43%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S+ Sbjct: 314 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 373 Query: 371 LDAYAD 354 L + D Sbjct: 374 LKDFLD 379 [196][TOP] >UniRef100_Q02AB6 RNA polymerase sigma factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02AB6_SOLUE Length = 563 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E +II++RFG EDG E +L E+G+ F ++RERI Q+E +AL +L+ S Sbjct: 492 VLKTLTPREEKIIKMRFGLEDGSEHTLEEVGQNFAVTRERIRQIEAKALRKLRHPSRSHR 551 Query: 371 LDAYAD 354 L A+ + Sbjct: 552 LRAFLE 557 [197][TOP] >UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXH1_HALOH Length = 358 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/67 (44%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E+R++ LRFG EDG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 292 DVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSK 351 Query: 374 GLDAYAD 354 L Y + Sbjct: 352 KLKDYLE 358 [198][TOP] >UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7M4_NOSP7 Length = 327 Score = 62.8 bits (151), Expect = 2e-08 Identities = 28/55 (50%), Positives = 42/55 (76%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKK 390 N+L +L P++R ++ LRFG EDG E SL+++GE LSRER+ QLE++AL L++ Sbjct: 262 NLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRR 316 [199][TOP] >UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M RepID=B2HLZ7_MYCMM Length = 501 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494 Query: 374 GLDAYAD 354 L Y D Sbjct: 495 VLRDYLD 501 [200][TOP] >UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TG57_HELMI Length = 371 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E +++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 306 VLETLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 365 Query: 371 LDAYAD 354 L Y D Sbjct: 366 LKDYLD 371 [201][TOP] >UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MG96_ALKOO Length = 372 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/69 (42%), Positives = 49/69 (71%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 ++ VL+ L P+E++++RLRFG +DG R+L E+G+ F ++RERI Q+E +AL +L+ Sbjct: 304 LVEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKLRHPSR 363 Query: 380 SQGLDAYAD 354 S+ L Y + Sbjct: 364 SKKLKDYLE 372 [202][TOP] >UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D3U6_PELTS Length = 363 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E+R++RLRFG +DG R+L E+G+ FG++RERI Q+E + L +L+ S+ Sbjct: 298 VLKTLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKK 357 Query: 371 LDAYAD 354 L Y D Sbjct: 358 LKDYLD 363 [203][TOP] >UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PT58_MYCUA Length = 501 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 435 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 494 Query: 374 GLDAYAD 354 L Y D Sbjct: 495 VLRDYLD 501 [204][TOP] >UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis RepID=Q60158_MYCBO Length = 528 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521 Query: 374 GLDAYAD 354 L Y D Sbjct: 522 VLRDYLD 528 [205][TOP] >UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LTA9_9FIRM Length = 375 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E R++RLRFG +DG R+L E+G+ FG++RERI Q+E +AL +L+ S+ Sbjct: 310 VLDTLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRK 369 Query: 371 LDAYAD 354 L + D Sbjct: 370 LKDFLD 375 [206][TOP] >UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZE6_ERYRH Length = 459 Score = 62.8 bits (151), Expect = 2e-08 Identities = 31/67 (46%), Positives = 45/67 (67%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E +++RLRFG EDG R+L E+G+ F ++RERI Q+E +AL +LK S+ Sbjct: 392 VLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLKHPTRSKR 451 Query: 371 LDAYADK 351 L + DK Sbjct: 452 LRDFVDK 458 [207][TOP] >UniRef100_C4FZZ1 RNA polymerase sigma factor n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FZZ1_ABIDE Length = 372 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 47/66 (71%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E R+I+LRFG EDG R+L E+G+ F ++RERI Q+E++AL +L++ S+ Sbjct: 307 VLDSLTEREARVIKLRFGLEDGRTRTLEEVGKEFNVTRERIRQIESKALRKLRQPSRSRK 366 Query: 371 LDAYAD 354 L Y + Sbjct: 367 LKDYLE 372 [208][TOP] >UniRef100_C2APF0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2APF0_TSUPA Length = 483 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 417 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 476 Query: 374 GLDAYAD 354 L Y D Sbjct: 477 VLRDYLD 483 [209][TOP] >UniRef100_C1ZIG8 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZIG8_PLALI Length = 290 Score = 62.8 bits (151), Expect = 2e-08 Identities = 28/64 (43%), Positives = 45/64 (70%) Frame = -2 Query: 566 RHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKC 387 +HV +L + +E +I+RLRFG +D E ++L EIGE GL+RER+ Q+E+ AL R+ K Sbjct: 227 KHVYAMLETMDEREAKILRLRFGLDDSEPKTLKEIGEEMGLTRERVRQIESEALKRIAKR 286 Query: 386 LVSQ 375 ++ + Sbjct: 287 ILGE 290 [210][TOP] >UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFC0_9FIRM Length = 361 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+E +++RLRFG EDG R+L E+G F ++RERI Q+E +AL +L+ S+ Sbjct: 296 VLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKK 355 Query: 371 LDAYAD 354 L + D Sbjct: 356 LKDFLD 361 [211][TOP] >UniRef100_A8S616 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S616_9FIRM Length = 457 Score = 62.8 bits (151), Expect = 2e-08 Identities = 28/57 (49%), Positives = 42/57 (73%), Gaps = 2/57 (3%) Frame = -2 Query: 548 LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL--KKCL 384 L L P+E ++IRLRFG +DG R+L E+G FG++RER+ Q+E +A+ +L +KCL Sbjct: 393 LKSLTPREEKVIRLRFGLDDGRPRTLEEVGRDFGVTRERVRQIEAKAIRKLHSRKCL 449 [212][TOP] >UniRef100_A2VL47 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis C RepID=A2VL47_MYCTU Length = 528 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521 Query: 374 GLDAYAD 354 L Y D Sbjct: 522 VLRDYLD 528 [213][TOP] >UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LQB0_PICSI Length = 495 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/66 (43%), Positives = 47/66 (71%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A+ +L++ +Q Sbjct: 429 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 488 Query: 371 LDAYAD 354 L Y D Sbjct: 489 LKHYLD 494 [214][TOP] >UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis RepID=B8LLW6_PICSI Length = 592 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/66 (43%), Positives = 47/66 (71%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E++++RLR+G +DG +SL E+GE F LSRER+ Q+E +A+ +L++ +Q Sbjct: 526 VLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQH 585 Query: 371 LDAYAD 354 L Y D Sbjct: 586 LKHYLD 591 [215][TOP] >UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTR4_PHYPA Length = 591 Score = 62.8 bits (151), Expect = 2e-08 Identities = 30/66 (45%), Positives = 46/66 (69%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+ER ++RLRFG +DG+ R+L EIG +F ++RERI Q+E +A+ +L++ + Sbjct: 522 VLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGV 581 Query: 371 LDAYAD 354 L Y D Sbjct: 582 LREYLD 587 [216][TOP] >UniRef100_P0A603 RNA polymerase sigma factor rpoD n=7 Tax=Mycobacterium tuberculosis complex RepID=RPOD_MYCBO Length = 528 Score = 62.8 bits (151), Expect = 2e-08 Identities = 29/67 (43%), Positives = 47/67 (70%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL+ L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 462 SVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521 Query: 374 GLDAYAD 354 L Y D Sbjct: 522 VLRDYLD 528 [217][TOP] >UniRef100_UPI0001B58588 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B58588 Length = 476 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 410 SVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 469 Query: 374 GLDAYAD 354 L Y D Sbjct: 470 VLRDYLD 476 [218][TOP] >UniRef100_UPI0001B45B4B RNA polymerase sigma factor n=1 Tax=Mycobacterium intracellulare ATCC 13950 RepID=UPI0001B45B4B Length = 488 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 422 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 481 Query: 374 GLDAYAD 354 L Y D Sbjct: 482 VLRDYLD 488 [219][TOP] >UniRef100_UPI0001AEFC8C RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces roseosporus NRRL 11379 RepID=UPI0001AEFC8C Length = 308 Score = 62.4 bits (150), Expect = 2e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+ Sbjct: 243 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 302 Query: 374 GLDAYA 357 G DA A Sbjct: 303 GFDAAA 308 [220][TOP] >UniRef100_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C50 Length = 521 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/66 (43%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L P+ER +I LRFG +DG ++L E+ + +G++RERI Q+E R L +L++ S Sbjct: 452 VLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARGLLKLRQPTRSCR 511 Query: 371 LDAYAD 354 L+ +AD Sbjct: 512 LEEFAD 517 [221][TOP] >UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102 RepID=Q9L4T2_NOSP7 Length = 389 Score = 62.4 bits (150), Expect = 2e-08 Identities = 27/53 (50%), Positives = 42/53 (79%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 VL+ L P+ER ++RLR+G +DG ++L EIG+IF ++RERI Q+E +AL +L+ Sbjct: 324 VLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLR 376 [222][TOP] >UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus RepID=Q7NKZ2_GLOVI Length = 350 Score = 62.4 bits (150), Expect = 2e-08 Identities = 28/54 (51%), Positives = 41/54 (75%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 ++L L P+ER ++RLR+G DG R+L E+G+ FGL+RERI Q+E RAL +L+ Sbjct: 279 SLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARALRKLR 332 [223][TOP] >UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii RepID=Q74IZ4_LACJO Length = 372 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/66 (43%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 366 Query: 371 LDAYAD 354 L + D Sbjct: 367 LKDFLD 372 [224][TOP] >UniRef100_Q73W40 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium subsp. paratuberculosis RepID=Q73W40_MYCPA Length = 509 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 443 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 502 Query: 374 GLDAYAD 354 L Y D Sbjct: 503 VLRDYLD 509 [225][TOP] >UniRef100_Q5YT84 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica RepID=Q5YT84_NOCFA Length = 454 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 388 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 447 Query: 374 GLDAYAD 354 L Y D Sbjct: 448 VLRDYLD 454 [226][TOP] >UniRef100_Q2JLG8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-2-3B'a(2-13) RepID=Q2JLG8_SYNJB Length = 320 Score = 62.4 bits (150), Expect = 2e-08 Identities = 26/53 (49%), Positives = 43/53 (81%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 +L +L P+E+ I++LR+G +DG +LSEIG++FGLSRER+ Q++ RA+ +L+ Sbjct: 253 MLEQLSPREQEILKLRYGLKDGHLHTLSEIGQLFGLSRERVRQIQARAMRKLR 305 [227][TOP] >UniRef100_Q0S1J1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0S1J1_RHOSR Length = 457 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 391 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 450 Query: 374 GLDAYAD 354 L Y D Sbjct: 451 VLRDYLD 457 [228][TOP] >UniRef100_C0ZYT9 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis PR4 RepID=C0ZYT9_RHOE4 Length = 452 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 386 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 445 Query: 374 GLDAYAD 354 L Y D Sbjct: 446 VLRDYLD 452 [229][TOP] >UniRef100_B8ZQV8 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae RepID=B8ZQV8_MYCLB Length = 574 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 508 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 567 Query: 374 GLDAYAD 354 L Y D Sbjct: 568 VLRDYLD 574 [230][TOP] >UniRef100_B1VTL5 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp. griseus NBRC 13350 RepID=B1VTL5_STRGG Length = 333 Score = 62.4 bits (150), Expect = 2e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+ Sbjct: 268 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 327 Query: 374 GLDAYA 357 G DA A Sbjct: 328 GFDAAA 333 [231][TOP] >UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MCY5_MYCA9 Length = 323 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/68 (42%), Positives = 49/68 (72%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L+ Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQIEREVMAKLRHGDR 314 Query: 380 SQGLDAYA 357 ++ L +YA Sbjct: 315 AERLRSYA 322 [232][TOP] >UniRef100_B1MCW6 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MCW6_MYCA9 Length = 467 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 401 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 460 Query: 374 GLDAYAD 354 L Y D Sbjct: 461 VLRDYLD 467 [233][TOP] >UniRef100_A4TCR0 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4TCR0_MYCGI Length = 488 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 422 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 481 Query: 374 GLDAYAD 354 L Y D Sbjct: 482 VLRDYLD 488 [234][TOP] >UniRef100_A3PYI3 RNA polymerase sigma factor n=1 Tax=Mycobacterium sp. JLS RepID=A3PYI3_MYCSJ Length = 480 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 414 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 473 Query: 374 GLDAYAD 354 L Y D Sbjct: 474 VLRDYLD 480 [235][TOP] >UniRef100_A1UF21 RNA polymerase sigma factor n=2 Tax=Mycobacterium RepID=A1UF21_MYCSK Length = 480 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 414 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 473 Query: 374 GLDAYAD 354 L Y D Sbjct: 474 VLRDYLD 480 [236][TOP] >UniRef100_A1T7X4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T7X4_MYCVP Length = 478 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 412 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 471 Query: 374 GLDAYAD 354 L Y D Sbjct: 472 VLRDYLD 478 [237][TOP] >UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1 RepID=A1T7W4_MYCVP Length = 329 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/65 (44%), Positives = 46/65 (70%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+ + Sbjct: 264 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 323 Query: 371 LDAYA 357 L +YA Sbjct: 324 LRSYA 328 [238][TOP] >UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QVZ5_MYCS2 Length = 319 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/65 (44%), Positives = 46/65 (70%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL L +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q+E + +L+ + Sbjct: 254 VLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADR 313 Query: 371 LDAYA 357 L +YA Sbjct: 314 LRSYA 318 [239][TOP] >UniRef100_A0QIN4 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium 104 RepID=A0QIN4_MYCA1 Length = 496 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 430 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 489 Query: 374 GLDAYAD 354 L Y D Sbjct: 490 VLRDYLD 496 [240][TOP] >UniRef100_Q9S5K3 RNA polymerase sigma factor n=1 Tax=Mycobacterium leprae RepID=Q9S5K3_MYCLE Length = 576 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 510 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 569 Query: 374 GLDAYAD 354 L Y D Sbjct: 570 VLRDYLD 576 [241][TOP] >UniRef100_Q8VM92 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians RepID=Q8VM92_RHOFA Length = 474 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 408 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 467 Query: 374 GLDAYAD 354 L Y D Sbjct: 468 VLRDYLD 474 [242][TOP] >UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni PSU-1 RepID=Q6J2R2_OENOB Length = 465 Score = 62.4 bits (150), Expect = 2e-08 Identities = 27/53 (50%), Positives = 40/53 (75%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 393 VL L +E ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +AL +L+ Sbjct: 399 VLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAKALRKLR 451 [243][TOP] >UniRef100_A0QW02 RNA polymerase sigma factor n=2 Tax=Mycobacterium smegmatis RepID=A0QW02_MYCS2 Length = 466 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 400 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 459 Query: 374 GLDAYAD 354 L Y D Sbjct: 460 VLRDYLD 466 [244][TOP] >UniRef100_C9N6U7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9N6U7_9ACTO Length = 333 Score = 62.4 bits (150), Expect = 2e-08 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +++ KL + II++R+G EDG ER+L+E+G+ GL+RERI Q+E AL LK+ Sbjct: 268 DLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMAHDT 327 Query: 374 GLDAYA 357 G DA A Sbjct: 328 GFDAAA 333 [245][TOP] >UniRef100_C7MYK8 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MYK8_SACVD Length = 439 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 373 SVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 432 Query: 374 GLDAYAD 354 L Y D Sbjct: 433 VLRDYLD 439 [246][TOP] >UniRef100_C1B3C8 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus RepID=C1B3C8_RHOOB Length = 323 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/68 (42%), Positives = 49/68 (72%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L++ Sbjct: 255 VRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314 Query: 380 SQGLDAYA 357 ++ L +YA Sbjct: 315 AERLRSYA 322 [247][TOP] >UniRef100_C1B466 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus RepID=C1B466_RHOOB Length = 457 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 391 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 450 Query: 374 GLDAYAD 354 L Y D Sbjct: 451 VLRDYLD 457 [248][TOP] >UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii RepID=C4VL08_9LACO Length = 364 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/66 (43%), Positives = 45/66 (68%) Frame = -2 Query: 551 VLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 372 VL+ L +E ++RLRFG +DG R+L E+G++FG++RERI Q+E +AL +L+ S Sbjct: 299 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 358 Query: 371 LDAYAD 354 L + D Sbjct: 359 LKDFLD 364 [249][TOP] >UniRef100_C3JLL5 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JLL5_RHOER Length = 430 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/67 (43%), Positives = 46/67 (68%) Frame = -2 Query: 554 NVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQ 375 +VL L +E ++RLRFG DG+ R+L EIG+++G++RERI Q+E++ + +L+ SQ Sbjct: 364 SVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 423 Query: 374 GLDAYAD 354 L Y D Sbjct: 424 VLRDYLD 430 [250][TOP] >UniRef100_C0ZYS7 RNA polymerase sigma factor n=2 Tax=Rhodococcus erythropolis RepID=C0ZYS7_RHOE4 Length = 323 Score = 62.4 bits (150), Expect = 2e-08 Identities = 29/68 (42%), Positives = 49/68 (72%) Frame = -2 Query: 560 VLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLV 381 V +VL L +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q+E + +L+ Sbjct: 255 VRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRVGDR 314 Query: 380 SQGLDAYA 357 ++ L +YA Sbjct: 315 AEKLRSYA 322