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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 324 bits (830), Expect = 3e-87
Identities = 149/191 (78%), Positives = 167/191 (87%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVN
Sbjct: 439 LKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVN 498
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VALMELYLHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLD
Sbjct: 499 VALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLD 558
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIK 540
HMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMGV GEHVPI+
Sbjct: 559 HMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQ 618
Query: 541 YGGGIGRLPTK 573
YG G+G LPTK
Sbjct: 619 YGSGVGGLPTK 629
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 324 bits (830), Expect = 3e-87
Identities = 149/191 (78%), Positives = 167/191 (87%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVN
Sbjct: 1879 LKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVN 1938
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VALMELYLHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLD
Sbjct: 1939 VALMELYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLD 1998
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIK 540
HMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMGV GEHVPI+
Sbjct: 1999 HMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQ 2058
Query: 541 YGGGIGRLPTK 573
YG G+G LPTK
Sbjct: 2059 YGSGVGGLPTK 2069
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 307 bits (786), Expect = 4e-82
Identities = 146/191 (76%), Positives = 163/191 (85%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVN
Sbjct: 439 LKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVN 498
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLD
Sbjct: 499 VALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLD 558
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIK 540
HMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK GV GE+VPI
Sbjct: 559 HMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIV 618
Query: 541 YGGGIGRLPTK 573
+G GIG LPTK
Sbjct: 619 FGEGIGGLPTK 629
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 307 bits (786), Expect = 4e-82
Identities = 146/191 (76%), Positives = 163/191 (85%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVN
Sbjct: 1881 LKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVN 1940
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VALMELYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLD
Sbjct: 1941 VALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLD 2000
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIK 540
HMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP E DFIVS +PLK GV GE+VPI
Sbjct: 2001 HMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIV 2060
Query: 541 YGGGIGRLPTK 573
+G GIG LPTK
Sbjct: 2061 FGEGIGGLPTK 2071
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 268 bits (684), Expect = 3e-70
Identities = 125/191 (65%), Positives = 155/191 (81%), Gaps = 1/191 (0%)
Frame = +1
Query: 1 LKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNV 177
LKRKF + + G + APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NV
Sbjct: 437 LKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINV 496
Query: 178 NVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVL 357
NV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +L
Sbjct: 497 NVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKIL 556
Query: 358 DHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPI 537
D ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PI
Sbjct: 557 DSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQGE-GVHIPI 615
Query: 538 KYGGGIGRLPT 570
K GGG+G LPT
Sbjct: 616 KIGGGVGGLPT 626
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 268 bits (684), Expect = 3e-70
Identities = 125/191 (65%), Positives = 155/191 (81%), Gaps = 1/191 (0%)
Frame = +1
Query: 1 LKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNV 177
LKRKF + + G + APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NV
Sbjct: 1863 LKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINV 1922
Query: 178 NVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVL 357
NV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +L
Sbjct: 1923 NVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKIL 1982
Query: 358 DHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPI 537
D ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PI
Sbjct: 1983 DSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQGE-GVHIPI 2041
Query: 538 KYGGGIGRLPT 570
K GGG+G LPT
Sbjct: 2042 KIGGGVGGLPT 2052
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 187 bits (476), Expect = 4e-46
Identities = 97/190 (51%), Positives = 124/190 (65%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Q VD + EL LNV
Sbjct: 447 LKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQ 505
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D
Sbjct: 506 VALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEID 565
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIK 540
G +F +FMH S+ GN+ HF L V GP YKP + +VST PLK G G VP++
Sbjct: 566 LDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVE 625
Query: 541 YGGGIGRLPT 570
G GIG LPT
Sbjct: 626 TGMGIGNLPT 635
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 187 bits (476), Expect = 4e-46
Identities = 97/190 (51%), Positives = 124/190 (65%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Q VD + EL LNV
Sbjct: 1937 LKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQ 1995
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D
Sbjct: 1996 VALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEID 2055
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHVPIK 540
G +F +FMH S+ GN+ HF L V GP YKP + +VST PLK G G VP++
Sbjct: 2056 LDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVE 2115
Query: 541 YGGGIGRLPT 570
G GIG LPT
Sbjct: 2116 TGMGIGNLPT 2125
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 101 bits (251), Expect = 5e-20
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 6/198 (3%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F D G + APLD TAI+SSL+W+ DV+ L N
Sbjct: 1635 LKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ---------------DVMSALKDNAR 1679
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
AL+E++ H D EF +RSF+V+++P D TW FH +QQ G + + P + ++
Sbjct: 1680 SALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASME 1738
Query: 361 HMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--VLG 522
+ + K M ++ G + H + + V GP + + C++ F+VST PL G
Sbjct: 1739 LLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSG 1797
Query: 523 EHVPIKYGGGIGRLPTKN 576
H+P++ G G+GR+P+++
Sbjct: 1798 IHIPVECGDGLGRMPSQD 1815
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 94.0 bits (232), Expect = 8e-18
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR K + G+I APL+ +I SSL ++ S D++++LV NVN
Sbjct: 1891 LKRGIKKGNGGMIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVN 1935
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVL 357
AL+EL+LH D + F VR+F++ +LP + TW ++FH Q +G P ++
Sbjct: 1936 TALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLI 1995
Query: 358 DHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEH-VP 534
+ GV F F+ + H L + G Y +E+ ++S L G + H +
Sbjct: 1996 EISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNAHKLE 2055
Query: 535 IKYGGGIGRLPTK 573
+K G GIGRLP+K
Sbjct: 2056 LKCGDGIGRLPSK 2068
[11][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F++ G+I APL+ +I SSL ++ S D++++L+ NVN
Sbjct: 1890 LKRGFVRSSGGMINAPLEKLSIMSSLVYIR---------------SDGSDMLQKLLDNVN 1934
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVL 357
AL+ELYLH D F+ VR+F+ +LP + TW ESFH Q++G + P ++
Sbjct: 1935 TALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLI 1994
Query: 358 DHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGE-HVP 534
+ G F F + + H L + G Y E + ++S + G +
Sbjct: 1995 EISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLPGDRNVFKLD 2054
Query: 535 IKYGGGIGRLPTK 573
+ G GIGRLP+K
Sbjct: 2055 LPCGDGIGRLPSK 2067
[12][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 90.5 bits (223), Expect = 8e-17
Identities = 62/193 (32%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AIFSSLY++ P + + + L LN
Sbjct: 714 LKRGFKVQSDGRVLAPLDLQAIFSSLYYINP----------------QGNTLNSLFLNAQ 757
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLHND ++F VR+F+VT++ W C +FH Q + P L+
Sbjct: 758 VALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE 817
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 818 --VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFP 875
Query: 535 IKYGGGIGRLPTK 573
+ YG G+G+ T+
Sbjct: 876 VDYGEGVGQQATE 888
[13][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 90.1 bits (222), Expect = 1e-16
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F K + G+I APL+ +I SSL ++ S D++++LV NVN
Sbjct: 430 LKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVN 474
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVL 357
AL+ELYLH D + + VR F++ +LP + TW + FH Q +G P ++
Sbjct: 475 TALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLI 534
Query: 358 DHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-VLGEHVP 534
+ G F F+ + + H L + G Y EE+ ++S L G + +
Sbjct: 535 EVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLT 594
Query: 535 IKYGGGIGRLPTK 573
+K G GIGRLP+K
Sbjct: 595 LKCGDGIGRLPSK 607
[14][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 90.1 bits (222), Expect = 1e-16
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F K + G+I APL+ +I SSL ++ S D++++LV NVN
Sbjct: 1889 LKRGFKKGNGGLIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVN 1933
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVL 357
AL+ELYLH D + + VR F++ +LP + TW + FH Q +G P ++
Sbjct: 1934 TALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLI 1993
Query: 358 DHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-VLGEHVP 534
+ G F F+ + + H L + G Y EE+ ++S L G + +
Sbjct: 1994 EVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLT 2053
Query: 535 IKYGGGIGRLPTK 573
+K G GIGRLP+K
Sbjct: 2054 LKCGDGIGRLPSK 2066
[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 87.4 bits (215), Expect = 7e-16
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AI+SSLY++ P + ++++ L LN
Sbjct: 440 LKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQ 483
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 484 VALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 543
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 544 --VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFP 601
Query: 535 IKYGGGIGRLPTK 573
+ YG G G+ T+
Sbjct: 602 VDYGEGTGQQATE 614
[16][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 87.4 bits (215), Expect = 7e-16
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AI+SSLY++ P + ++++ L LN
Sbjct: 714 LKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQ 757
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 758 VALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 817
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 818 --VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFP 875
Query: 535 IKYGGGIGRLPTK 573
+ YG G G+ T+
Sbjct: 876 VDYGEGTGQQATE 888
[17][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 87.4 bits (215), Expect = 7e-16
Identities = 60/193 (31%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AI+SSLY++ P + ++++ L LN
Sbjct: 1926 LKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQ 1969
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 1970 VALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 2029
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 2030 --VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFP 2087
Query: 535 IKYGGGIGRLPTK 573
+ YG G G+ T+
Sbjct: 2088 VDYGEGTGQQATE 2100
[18][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 86.7 bits (213), Expect = 1e-15
Identities = 60/193 (31%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AI+SSLY++ P + +++ L LN
Sbjct: 714 LKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQ 757
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 758 VALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 817
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 818 --VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFP 875
Query: 535 IKYGGGIGRLPTK 573
+ YG G G+ T+
Sbjct: 876 VDYGEGTGQQATE 888
[19][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 86.7 bits (213), Expect = 1e-15
Identities = 60/193 (31%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AI+SSLY++ P + +++ L LN
Sbjct: 714 LKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQ 757
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 758 VALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 817
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 818 --VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFP 875
Query: 535 IKYGGGIGRLPTK 573
+ YG G G+ T+
Sbjct: 876 VDYGEGTGQQATE 888
[20][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 86.3 bits (212), Expect = 2e-15
Identities = 60/193 (31%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR F G + APLD+ AI+SSLY++ P + +++ L LN
Sbjct: 440 LKRGFRVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQ 483
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
VAL ELYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 484 VALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE 543
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGVLGEHVP 534
V KF+ L V GP ++ + D +VS LK G + P
Sbjct: 544 --VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFP 601
Query: 535 IKYGGGIGRLPTK 573
+ YG G G+ T+
Sbjct: 602 VDYGEGTGQQATE 614
[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 77.4 bits (189), Expect = 7e-13
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 3/193 (1%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR FL D+G + LD T I+SSL +L S + D I L NV
Sbjct: 1938 LKRSFLVSDSGQVMPALDRTCIYSSLLYLR---------------SADCDPIPLLHQNVQ 1982
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPAS 351
AL ELY D +EF +R+F++ RLP+ + + W C ++ TG +PA
Sbjct: 1983 NALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAG 2042
Query: 352 VLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGVLGEHV 531
VLD + K FM + N + + VCGP + + + L G G +
Sbjct: 2043 VLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQI 2102
Query: 532 PIKYGGGIGRLPT 570
+ G +PT
Sbjct: 2103 KPVHAATQGAMPT 2115
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 73.9 bits (180), Expect = 8e-12
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR+F KL+ G + APLD+ ++++SL +T H L NV+
Sbjct: 431 LKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVH 475
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
AL+ELYLH + F +R F+ R +W +FH Q +G+ P + D
Sbjct: 476 NALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD 533
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGVLGE 525
VD + + +A F T + + +CGP + E F+VST PL+ G
Sbjct: 534 --VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGS 591
Query: 526 --HVPIKYG-GGIGRLPTKN 576
H I+Y G+GRLP+++
Sbjct: 592 GIHRAIEYPCNGVGRLPSQD 611
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 73.9 bits (180), Expect = 8e-12
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 8/200 (4%)
Frame = +1
Query: 1 LKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVN 180
LKR+F KL+ G + APLD+ ++++SL +T H L NV+
Sbjct: 1818 LKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVH 1862
Query: 181 VALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 360
AL+ELYLH + F +R F+ R +W +FH Q +G+ P + D
Sbjct: 1863 NALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD 1920
Query: 361 HMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGVLGE 525
VD + + +A F T + + +CGP + E F+VST PL+ G
Sbjct: 1921 --VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSADRGS 1978
Query: 526 --HVPIKYG-GGIGRLPTKN 576
H I+Y G+GRLP+++
Sbjct: 1979 GIHRAIEYPCNGVGRLPSQD 1998