BB909250 ( RCE08045 )

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[1][TOP]
>UniRef100_UPI00019836CE PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
            RepID=UPI00019836CE
          Length = 1383

 Score =  234 bits (598), Expect = 3e-60
 Identities = 119/171 (69%), Positives = 144/171 (84%)
 Frame = +1

Query: 67   FIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGV 246
            F   ISGI+ +QL+VFLD C+SRY+ K+IEAGT IGAIGAHSIGEPGTQMTLKTFHFAGV
Sbjct: 1004 FAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGV 1063

Query: 247  ASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIK 426
            ASMNVTLGVPRI EIINGA  I TPIITA LE ++N+  ARMVKGRIE+TTLGQVAKSIK
Sbjct: 1064 ASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIK 1123

Query: 427  VVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            +V TSR A + ++LD + I+ + L+IDSN V+ESIL+  ++KLK++ IK+L
Sbjct: 1124 IVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVL 1174

[2][TOP]
>UniRef100_A7NZA4 DNA-directed RNA polymerase n=1 Tax=Vitis vinifera RepID=A7NZA4_VITVI
          Length = 1370

 Score =  234 bits (598), Expect = 3e-60
 Identities = 119/171 (69%), Positives = 144/171 (84%)
 Frame = +1

Query: 67   FIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGV 246
            F   ISGI+ +QL+VFLD C+SRY+ K+IEAGT IGAIGAHSIGEPGTQMTLKTFHFAGV
Sbjct: 1004 FAKNISGITSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGV 1063

Query: 247  ASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIK 426
            ASMNVTLGVPRI EIINGA  I TPIITA LE ++N+  ARMVKGRIE+TTLGQVAKSIK
Sbjct: 1064 ASMNVTLGVPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIK 1123

Query: 427  VVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            +V TSR A + ++LD + I+ + L+IDSN V+ESIL+  ++KLK++ IK+L
Sbjct: 1124 IVLTSRLALIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVL 1174

[3][TOP]
>UniRef100_B9GIK9 DNA-directed RNA polymerase n=1 Tax=Populus trichocarpa
            RepID=B9GIK9_POPTR
          Length = 1394

 Score =  223 bits (567), Expect = 1e-56
 Identities = 118/193 (61%), Positives = 144/193 (74%)
 Frame = +1

Query: 1    ENTKLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAI 180
            EN K  E +T       KN      ++SGI+ +QLEVFL  CL RY +K+IE GT IGAI
Sbjct: 1004 ENIKNVEGLTGIS----KNTEKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAI 1059

Query: 181  GAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNIN 360
            GA SIGEPGTQMTLKTFHFAGVASMN+T GVPRI EIINGA  I TPIIT  LE + N+N
Sbjct: 1060 GAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITVELEHNSNVN 1119

Query: 361  IARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQT 540
             AR++KGRI+KT LGQVAKSIK+V TSRSA++ ++LD K I EA L++D+N V+E IL+T
Sbjct: 1120 AARIIKGRIQKTVLGQVAKSIKIVMTSRSASVKVTLDMKTIREAQLSLDANIVRELILET 1179

Query: 541  GKLKLKEKEIKIL 579
             K+K K + I +L
Sbjct: 1180 PKIKRKLQRINVL 1192

[4][TOP]
>UniRef100_B9T0Q9 DNA-directed RNA polymerase n=1 Tax=Ricinus communis
            RepID=B9T0Q9_RICCO
          Length = 1383

 Score =  221 bits (562), Expect = 4e-56
 Identities = 111/176 (63%), Positives = 140/176 (79%)
 Frame = +1

Query: 52   KNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTF 231
            K +     +I G+S RQ+EVF+  C++RY +K++E GT IGAIGA SIGEPGTQMTLKTF
Sbjct: 990  KIIERLAHKIFGVSERQIEVFVKTCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTF 1049

Query: 232  HFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQV 411
            HFAGVASMN+T GVPRI EIINGA  I TPIITA LE + N+  AR+ KGRI+KT LGQV
Sbjct: 1050 HFAGVASMNITQGVPRIKEIINGAKKISTPIITAELEQNTNVTAARIAKGRIQKTVLGQV 1109

Query: 412  AKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            AKSIK+V TSRSA++ I+LD K I+ A L++D+N VKE+IL+T ++KLK + IK+L
Sbjct: 1110 AKSIKIVMTSRSASVVITLDMKTIQNAQLSLDANIVKEAILRTPRIKLKPQHIKVL 1165

[5][TOP]
>UniRef100_UPI0001505876 NRPC1; DNA binding / DNA-directed RNA polymerase/ ribonucleoside
            binding / zinc ion binding n=1 Tax=Arabidopsis thaliana
            RepID=UPI0001505876
          Length = 1376

 Score =  207 bits (526), Expect = 6e-52
 Identities = 109/168 (64%), Positives = 134/168 (79%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            + SG++ +QLEVF+ IC+ RYR KKIEAGT IG IGA SIGEPGTQMTLKTFHFAGVASM
Sbjct: 993  KASGVTDKQLEVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASM 1052

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+T GVPRI EIIN + NI TP+I+A LE    +  AR VKGRIEKTTLGQVA+SI+V+ 
Sbjct: 1053 NITQGVPRINEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLM 1112

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            TS SA++ I LD KIIEEA L+I   +VK SIL+T ++KL + +I++L
Sbjct: 1113 TSTSASVRIILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVL 1160

[6][TOP]
>UniRef100_Q9LVH0 DNA-directed RNA polymerase n=1 Tax=Arabidopsis thaliana
            RepID=Q9LVH0_ARATH
          Length = 1383

 Score =  197 bits (501), Expect = 5e-49
 Identities = 104/159 (65%), Positives = 127/159 (79%)
 Frame = +1

Query: 103  LEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 282
            ++VF+ IC+ RYR KKIEAGT IG IGA SIGEPGTQMTLKTFHFAGVASMN+T GVPRI
Sbjct: 1009 MQVFVKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 1068

Query: 283  MEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFI 462
             EIIN + NI TP+I+A LE    +  AR VKGRIEKTTLGQVA+SI+V+ TS SA++ I
Sbjct: 1069 NEIINASKNISTPVISAELENPLELTSARWVKGRIEKTTLGQVAESIEVLMTSTSASVRI 1128

Query: 463  SLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
             LD KIIEEA L+I   +VK SIL+T ++KL + +I++L
Sbjct: 1129 ILDNKIIEEACLSITPWSVKNSILKTPRIKLNDNDIRVL 1167

[7][TOP]
>UniRef100_A9RSV5 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9RSV5_PHYPA
          Length = 1397

 Score =  197 bits (501), Expect = 5e-49
 Identities = 103/172 (59%), Positives = 130/172 (75%), Gaps = 5/172 (2%)
 Frame = +1

Query: 79   ISGISRRQLE-----VFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAG 243
            ISG++ RQLE     VFLD C+ RY  K++E G  +GA+GA SIGEPGTQMTLKTFHFAG
Sbjct: 1017 ISGLTSRQLEICLLQVFLDTCIKRYHMKRVEPGAAVGAVGAQSIGEPGTQMTLKTFHFAG 1076

Query: 244  VASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSI 423
            VASMN+TLGVPRI EIIN + NI TPIITA+L + ++   AR+VKGRIEKTTLG+VAKSI
Sbjct: 1077 VASMNITLGVPRIKEIINASKNISTPIITAVLVSGNDEKAARIVKGRIEKTTLGEVAKSI 1136

Query: 424  KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            K V  +  A + + LD K I+   L+I+S+TV  +I+QT K+KLK   I+I+
Sbjct: 1137 KTVLRASQAIISVKLDMKRIDALQLDINSDTVALAIVQTPKIKLKHVNIRIV 1188

[8][TOP]
>UniRef100_B9FFW1 DNA-directed RNA polymerase n=1 Tax=Oryza sativa Japonica Group
            RepID=B9FFW1_ORYSJ
          Length = 1321

 Score =  194 bits (492), Expect = 5e-48
 Identities = 102/179 (56%), Positives = 130/179 (72%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            +H     +    ISGIS +QL+VFLD CLSRY  KKIEAG  IGAIGA SIGEPGTQMTL
Sbjct: 930  RHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTL 989

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMNVTLGVPRI EIIN A  I TPIITA L ++ ++  AR+VKG +EK  L
Sbjct: 990  KTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVL 1049

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            G+VA++IK+V  S    L + LD + IE  ++ I +++V+ SIL   K+KLK + ++++
Sbjct: 1050 GEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVI 1108

[9][TOP]
>UniRef100_Q7X881 DNA-directed RNA polymerase n=3 Tax=Oryza sativa RepID=Q7X881_ORYSJ
          Length = 1383

 Score =  194 bits (492), Expect = 5e-48
 Identities = 102/179 (56%), Positives = 130/179 (72%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            +H     +    ISGIS +QL+VFLD CLSRY  KKIEAG  IGAIGA SIGEPGTQMTL
Sbjct: 992  RHSSFEESIAANISGISVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTL 1051

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMNVTLGVPRI EIIN A  I TPIITA L ++ ++  AR+VKG +EK  L
Sbjct: 1052 KTFHFAGVASMNVTLGVPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVL 1111

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            G+VA++IK+V  S    L + LD + IE  ++ I +++V+ SIL   K+KLK + ++++
Sbjct: 1112 GEVAEAIKIVLKSSQPNLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVI 1170

[10][TOP]
>UniRef100_C5YBD9 DNA-directed RNA polymerase n=1 Tax=Sorghum bicolor
            RepID=C5YBD9_SORBI
          Length = 1391

 Score =  192 bits (488), Expect = 2e-47
 Identities = 100/167 (59%), Positives = 127/167 (76%)
 Frame = +1

Query: 79   ISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            ISGIS +QL+VFLD CLSRY+ KKIEAG  IGAIGA SIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1011 ISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1070

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            VTLGVPRI EIIN A  I TPIITA L +  ++  AR+VKG +EK  LG+VA +I++V  
Sbjct: 1071 VTLGVPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLK 1130

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            S    L + LD ++IE  ++ I +++V+ SIL   K+KLK + ++++
Sbjct: 1131 SSQPNLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVI 1177

[11][TOP]
>UniRef100_Q86AQ5 DNA-directed RNA polymerase III subunit rpc1 n=1 Tax=Dictyostelium
            discoideum RepID=RPC1_DICDI
          Length = 1450

 Score =  188 bits (478), Expect = 2e-46
 Identities = 104/186 (55%), Positives = 126/186 (67%), Gaps = 6/186 (3%)
 Frame = +1

Query: 31   EDDPKHLKNLN------NFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHS 192
            E + K LK L       + + +I  I++ Q+E+FLDICL +Y   +IE GT +GAIGA S
Sbjct: 1051 EKESKRLKLLGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQS 1110

Query: 193  IGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARM 372
            IGEPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN A NI TPIITA L  D +I  AR+
Sbjct: 1111 IGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARI 1170

Query: 373  VKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            V GRIEKTTLG VA  IK V       L I +D+  ++   L I+S T+ +SI  T  LK
Sbjct: 1171 VAGRIEKTTLGHVATHIKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLK 1230

Query: 553  LKEKEI 570
            LK ++I
Sbjct: 1231 LKPEQI 1236

[12][TOP]
>UniRef100_C1E5P6 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1E5P6_9CHLO
          Length = 1479

 Score =  184 bits (468), Expect = 3e-45
 Identities = 92/162 (56%), Positives = 118/162 (72%)
 Frame = +1

Query: 85   GISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
            G+++ QL+ FL+ C+ +Y  K+IE G+ +GA+GA SIGEPGTQMTLKTFHFAGVASMNVT
Sbjct: 1014 GVTKAQLDEFLERCVRKYSAKRIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVT 1073

Query: 265  LGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSR 444
            LGVPRI EIIN A NI TPIITA LE DDN+  AR+VKGR+EKTTLG+V K I VV    
Sbjct: 1074 LGVPRIKEIINAAKNISTPIITATLECDDNVKAARVVKGRVEKTTLGEVCKFIDVVYNPS 1133

Query: 445  SAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEI 570
            +  + + LD  +I    L++   +V+ S++   KLKLK   +
Sbjct: 1134 ACYVEVCLDPAVISALQLDVTVESVRHSLITAPKLKLKANTV 1175

[13][TOP]
>UniRef100_C1MN08 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MN08_9CHLO
          Length = 1591

 Score =  182 bits (462), Expect = 2e-44
 Identities = 92/162 (56%), Positives = 117/162 (72%)
 Frame = +1

Query: 85   GISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
            G++  QL+ FL  C+ +Y  K+IE G+ +GA+GA SIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1163 GVTAAQLDEFLARCVQKYDAKRIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNIT 1222

Query: 265  LGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSR 444
            LGVPRI EIIN + NI TPIITA L  DD++  AR+VKGR+EKTTLG+V K I VV    
Sbjct: 1223 LGVPRIKEIINASKNISTPIITATLACDDDVKAARVVKGRVEKTTLGEVCKHIHVVFDPT 1282

Query: 445  SAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEI 570
            +  L ++LD  +I    L++   TVK ++L T KLKLK   +
Sbjct: 1283 ACYLEVALDPDVIRALQLDVTVATVKRALLSTTKLKLKPNRV 1324

[14][TOP]
>UniRef100_Q01DV6 DNA-directed RNA polymerase n=1 Tax=Ostreococcus tauri
            RepID=Q01DV6_OSTTA
          Length = 1406

 Score =  177 bits (448), Expect = 7e-43
 Identities = 87/163 (53%), Positives = 116/163 (71%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            IS  QL  FLD+C+ +Y  K+IE GT +GA+GA SIGEPGTQMTLKTFHFAGVASMN+TL
Sbjct: 1014 ISESQLNTFLDVCMQKYNAKRIEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNITL 1073

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN + +I TPII+A L +D ++  AR+VKGR+EKTTLG++     +V  S  
Sbjct: 1074 GVPRIKEIINASKSISTPIISASLMSDRDVKAARVVKGRVEKTTLGEICSDAGIVVRSHE 1133

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
              L + LD + I +  L++  +T + ++L   KLKLK + + I
Sbjct: 1134 VYLELVLDLEAINQLQLDVTIHTARTAVLAAPKLKLKPQHVLI 1176

[15][TOP]
>UniRef100_A4RTE2 DNA-directed RNA polymerase n=1 Tax=Ostreococcus lucimarinus CCE9901
            RepID=A4RTE2_OSTLU
          Length = 1395

 Score =  177 bits (448), Expect = 7e-43
 Identities = 89/163 (54%), Positives = 117/163 (71%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S RQ++ FLD C  +Y  K+IE GT +GAIGA SIGEPGTQMTLKTFHFAGVASMN+TL
Sbjct: 1015 MSDRQMKAFLDACARKYTEKRIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNITL 1074

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN + NI TPIITA L +D ++  AR+VKGR+EKTTLG++   I +V     
Sbjct: 1075 GVPRIKEIINASKNISTPIITASLMSDRDVKAARVVKGRVEKTTLGEICSEINIVVRPHD 1134

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
              L + LD + I +  L++  ++V+ ++L   KLKLK + + I
Sbjct: 1135 LYLELMLDMEAINQLQLDVTIHSVRLAVLGAPKLKLKPQHVLI 1177

[16][TOP]
>UniRef100_Q45NI8 RNA polymerase III largest subunit n=1 Tax=Medicago sativa
           RepID=Q45NI8_MEDSA
          Length = 147

 Score =  174 bits (442), Expect = 3e-42
 Identities = 89/104 (85%), Positives = 96/104 (92%)
 Frame = +1

Query: 1   ENTKLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAI 180
           +NT LT++I EDD  +LKN   F+P+ISGISRRQLEVFLDICLSRYR KKIEAGTPIGAI
Sbjct: 47  KNTTLTKSIGEDDSSNLKN---FLPKISGISRRQLEVFLDICLSRYRLKKIEAGTPIGAI 103

Query: 181 GAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNI 312
           GAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI+EIINGASNI
Sbjct: 104 GAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNI 147

[17][TOP]
>UniRef100_Q6CB20 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CB20_YARLI
          Length = 1483

 Score =  171 bits (432), Expect = 5e-41
 Identities = 86/169 (50%), Positives = 117/169 (69%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            + ++  IS R ++ FL  CL +Y+  ++E GT +GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1067 VNQVCRISHRMVDTFLQACLRKYQKAQVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1126

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPIIT +L  +  +  AR+VKGRIEKT LG +A  I+ 
Sbjct: 1127 SMNVTLGVPRIKEIINASKAISTPIITTVLNNETELQAARIVKGRIEKTLLGDIAHYIQD 1186

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
              +   A++ + +D   I+   L ID + ++E+I++  KLKLK  ++ I
Sbjct: 1187 EYSYAKASVRVRIDFNTIDHLLLEIDMDQIREAIIKAPKLKLKPGQVSI 1235

[18][TOP]
>UniRef100_A5E7R0 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E7R0_LODEL
          Length = 1450

 Score =  168 bits (425), Expect = 3e-40
 Identities = 88/172 (51%), Positives = 119/172 (69%)
 Frame = +1

Query: 64   NFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAG 243
            N I ++  IS++ +++FL  CL +Y   K+EAGT +GAIGA SIGEPGTQMTLKTFHFAG
Sbjct: 1048 NAIDQLMKISKKTVKIFLTQCLYKYSRAKVEAGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1107

Query: 244  VASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSI 423
            VASMNVTLGVPRI EIIN +  I TPII A+L  +D+   AR+ KGRIEKT+L  V+  I
Sbjct: 1108 VASMNVTLGVPRIKEIINASKTISTPIINAVLVNEDDEIAARVAKGRIEKTSLKDVSIYI 1167

Query: 424  KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            + V     A L I +D   IE+  L +D + + E+I +  KLK+ + ++ ++
Sbjct: 1168 EDVYKDNLAFLSIKVDLDSIEKLQLELDISNIAEAICKAPKLKISQSDVSVM 1219

[19][TOP]
>UniRef100_A9VCM2 DNA-directed RNA polymerase n=1 Tax=Monosiga brevicollis
            RepID=A9VCM2_MONBE
          Length = 1414

 Score =  167 bits (422), Expect = 7e-40
 Identities = 87/187 (46%), Positives = 119/187 (63%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIG 198
            E   EDDP     +NN +     ++R  + +F++  L ++R   +E GT +GAIGA SIG
Sbjct: 1007 EAPAEDDPAKRHLVNNLM----SVTREDMRIFVEKALFKFRRTVVEPGTAVGAIGAQSIG 1062

Query: 199  EPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVK 378
            EPGTQMTLKTFHFAGVA+MNVTLGVPRI EIIN A NI TP+ITA LE D   + AR VK
Sbjct: 1063 EPGTQMTLKTFHFAGVAAMNVTLGVPRIKEIINAAKNISTPVITAKLENDREESFARQVK 1122

Query: 379  GRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
             R+E  TLG+VA    VV       + + L+ K+I+  +L +  NT+ +SI  +   K+K
Sbjct: 1123 ARLETLTLGEVADHFDVVCNEDGGYVRVKLNLKVIQRKHLEVTMNTIIDSIAASRLTKIK 1182

Query: 559  EKEIKIL 579
             + + ++
Sbjct: 1183 HEHLSVM 1189

[20][TOP]
>UniRef100_UPI00017927B1 PREDICTED: similar to AGAP004703-PA n=1 Tax=Acyrthosiphon pisum
            RepID=UPI00017927B1
          Length = 1355

 Score =  166 bits (421), Expect = 9e-40
 Identities = 91/175 (52%), Positives = 114/175 (65%)
 Frame = +1

Query: 52   KNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTF 231
            K LN  + +I  I+  QL  F   CL++Y    IE GTP+GAI A SIGEPGTQMTLKTF
Sbjct: 947  KWLNLEVSKIQRITSTQLIKFYVTCLTKYMAAVIEPGTPVGAIAAQSIGEPGTQMTLKTF 1006

Query: 232  HFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQV 411
            HFAGVASMN+T GVPRI EIIN + NI TPIITA LE D +   AR+VK RIE+TTL +V
Sbjct: 1007 HFAGVASMNITQGVPRIKEIINSSKNISTPIITAYLENDKDKEFARIVKARIEQTTLTEV 1066

Query: 412  AKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
               I VV  S    L I +D   I+   L +   T+++SIL T ++ +K  ++ I
Sbjct: 1067 CSFIDVVLDSAECYLLIHIDMNRIKLLQLEVTIETIRDSILSTPRIGIKANQVNI 1121

[21][TOP]
>UniRef100_C4Y380 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y380_CLAL4
          Length = 1491

 Score =  165 bits (418), Expect = 2e-39
 Identities = 90/186 (48%), Positives = 121/186 (65%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIG 198
            + + ++DP  +  +N  +     IS+  +E FL  CL +Y   ++E GT +GAIGAHSIG
Sbjct: 1071 DMVLDEDPVSINAINQLMK----ISQTCVEEFLKQCLYKYLRARVEPGTAVGAIGAHSIG 1126

Query: 199  EPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVK 378
            EPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN A  I TPII  +L  D++   AR+VK
Sbjct: 1127 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVISTPIINTVLVNDEDEVAARVVK 1186

Query: 379  GRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
            GRIEKT L  VA  ++ V  +  A L I +D K IE+  L +  + ++++I    KLK+ 
Sbjct: 1187 GRIEKTLLRDVAFFVEDVYKNDMAYLSIKIDLKTIEKLQLELTMDNIRQAIANAPKLKIL 1246

Query: 559  EKEIKI 576
              E+ +
Sbjct: 1247 NSEVSV 1252

[22][TOP]
>UniRef100_UPI000151B46E DNA-directed RNA polymerase III largest subunit n=1 Tax=Pichia
            guilliermondii ATCC 6260 RepID=UPI000151B46E
          Length = 1379

 Score =  163 bits (412), Expect = 1e-38
 Identities = 91/183 (49%), Positives = 118/183 (64%)
 Frame = +1

Query: 28   TEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPG 207
            ++DDP  L  +N    ++S IS + +  FLD C+ +Y   K+E GT +GAIGA SIGEPG
Sbjct: 963  SKDDPVQLNAVN----QLSKISLKAINKFLDQCIYKYSRAKVEPGTAVGAIGAQSIGEPG 1018

Query: 208  TQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRI 387
            TQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII  +L  DD+   AR+VKGRI
Sbjct: 1019 TQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINGVLVNDDDEIAARVVKGRI 1078

Query: 388  EKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKE 567
            EKT L  VA  I+ V     A L + +D   IE+  L +   ++  +I+   KLK+   +
Sbjct: 1079 EKTLLEDVAFFIEDVYKDNLAYLSVKIDLDTIEKLQLELTIESIAHAIVTAPKLKIVASD 1138

Query: 568  IKI 576
            + I
Sbjct: 1139 VSI 1141

[23][TOP]
>UniRef100_A5DM42 DNA-directed RNA polymerase n=1 Tax=Pichia guilliermondii
            RepID=A5DM42_PICGU
          Length = 1379

 Score =  163 bits (412), Expect = 1e-38
 Identities = 91/183 (49%), Positives = 118/183 (64%)
 Frame = +1

Query: 28   TEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPG 207
            ++DDP  L  +N    ++S IS + +  FLD C+ +Y   K+E GT +GAIGA SIGEPG
Sbjct: 963  SKDDPVQLNAVN----QLSKISLKAINKFLDQCIYKYSRAKVEPGTAVGAIGAQSIGEPG 1018

Query: 208  TQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRI 387
            TQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII  +L  DD+   AR+VKGRI
Sbjct: 1019 TQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINGVLVNDDDEIAARVVKGRI 1078

Query: 388  EKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKE 567
            EKT L  VA  I+ V     A L + +D   IE+  L +   ++  +I+   KLK+   +
Sbjct: 1079 EKTLLEDVAFFIEDVYKDNLAYLSVKIDLDTIEKLQLELTIESIAHAIVTAPKLKIVASD 1138

Query: 568  IKI 576
            + I
Sbjct: 1139 VSI 1141

[24][TOP]
>UniRef100_UPI0001923A96 PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC1,
           partial n=1 Tax=Hydra magnipapillata RepID=UPI0001923A96
          Length = 730

 Score =  162 bits (411), Expect = 1e-38
 Identities = 85/151 (56%), Positives = 106/151 (70%)
 Frame = +1

Query: 124 CLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGA 303
           C  RY   + E GT +GA+ A SIGEPGTQMTLKTFHFAGVA+MN+TLGVPRI EIIN +
Sbjct: 448 CAKRYLHARCEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVATMNITLGVPRIKEIINAS 507

Query: 304 SNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
             I TPIITA LE DD+I  AR VKGR+EKTTLG+V + I+ V T  +  L I +D + I
Sbjct: 508 KKISTPIITAPLEVDDDIEYARSVKGRVEKTTLGEVCEYIEEVFTPDACYLLIKIDSQRI 567

Query: 484 EEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
               L ID+N +K ++  + KLKLK + + I
Sbjct: 568 NLLKLEIDANAIKYALCISPKLKLKPQFVSI 598

[25][TOP]
>UniRef100_A7SJ34 DNA-directed RNA polymerase n=1 Tax=Nematostella vectensis
            RepID=A7SJ34_NEMVE
          Length = 1398

 Score =  160 bits (405), Expect = 7e-38
 Identities = 82/177 (46%), Positives = 119/177 (67%)
 Frame = +1

Query: 46   HLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLK 225
            H    N  +  ++  +  QL++FL +C  +Y   ++E G+ +GAI A SIGEPGTQMTLK
Sbjct: 991  HSITSNKIVDYVNRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGTQMTLK 1050

Query: 226  TFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLG 405
            TFHFAGVASMN+TLGVPRI EIIN +  I TPII+A L+ D +  +AR VKGRIE+T LG
Sbjct: 1051 TFHFAGVASMNITLGVPRIKEIINASRKISTPIISAQLQDDRDQELARAVKGRIERTLLG 1110

Query: 406  QVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            +V + I+ V    +  L I LD + I    L +D++T++ +I  + KL+L + ++++
Sbjct: 1111 EVTEYIEEVFLPDNCYLLIKLDTERIRLLKLEVDADTIQAAICSSRKLRLNQSQVRV 1167

[26][TOP]
>UniRef100_Q756K2 DNA-directed RNA polymerase n=1 Tax=Eremothecium gossypii
            RepID=Q756K2_ASHGO
          Length = 1459

 Score =  160 bits (404), Expect = 9e-38
 Identities = 86/170 (50%), Positives = 111/170 (65%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            + ++  IS + +  FLDI +S+YR  K+E GT +GAIGAHSIGEPGTQMTLKTFHFAGVA
Sbjct: 1055 VNQLCKISSKLVRTFLDIAISKYRKAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGVA 1114

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPII A L  DD+   AR+VKGR+EKT L  V   I+ 
Sbjct: 1115 SMNVTLGVPRIKEIINASKVISTPIINATLVNDDDERAARVVKGRVEKTLLSDVIFYIQD 1174

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            V     + L + +D   IE+  L +    +  +I    KLK+   ++ I+
Sbjct: 1175 VYRDNMSFLQVKVDLATIEKLQLELTVEDIAIAITSAPKLKISTGDVSIV 1224

[27][TOP]
>UniRef100_B9WF61 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WF61_CANDC
          Length = 1448

 Score =  160 bits (404), Expect = 9e-38
 Identities = 86/172 (50%), Positives = 114/172 (66%)
 Frame = +1

Query: 61   NNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFA 240
            +N I ++S IS   ++ FL+ CL +Y   ++E GT +GAIGA SIGEPGTQMTLKTFHFA
Sbjct: 1045 SNAIDQLSKISSNAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1104

Query: 241  GVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKS 420
            GVASMNVTLGVPRI EIIN +  I TPII A+L  DD+   AR+ KGRIEKT L  VA  
Sbjct: 1105 GVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDDDEIAARVAKGRIEKTLLEDVAFY 1164

Query: 421  IKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            I+ V     A L I +D + I++  L ++   +  +I    KLK+ + ++ +
Sbjct: 1165 IEDVYKDNLAYLSIKVDLETIDKLQLELNLENIAVAIANAPKLKISQSDVSV 1216

[28][TOP]
>UniRef100_UPI00003BE6A5 hypothetical protein DEHA0G13849g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BE6A5
          Length = 1457

 Score =  159 bits (402), Expect = 1e-37
 Identities = 85/169 (50%), Positives = 112/169 (66%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            I ++S +S   +  FL+ C+ +Y   K+E GT +GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1048 INQLSKVSANSINKFLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1107

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPII ++L  DD+   AR+VKGR+EKT L  VA  I+ 
Sbjct: 1108 SMNVTLGVPRIKEIINASKVISTPIINSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIED 1167

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            V  +  A L I +D   IE+  L ++  ++  SI    KLK+   ++ +
Sbjct: 1168 VYKNNMAYLSIKIDLNTIEKLQLELNIESIAHSIANAPKLKILAGDVSV 1216

[29][TOP]
>UniRef100_Q5A164 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5A164_CANAL
          Length = 1448

 Score =  159 bits (402), Expect = 1e-37
 Identities = 87/186 (46%), Positives = 121/186 (65%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIG 198
            E + ++D   +K ++    ++S IS + ++ FL+ CL +Y   ++E GT +GAIGA SIG
Sbjct: 1035 EIVMDEDAVKVKAID----QLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIG 1090

Query: 199  EPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVK 378
            EPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII A+L  DD+   AR+ K
Sbjct: 1091 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDDDEIAARVAK 1150

Query: 379  GRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
            GRIEKT L  VA  I+ V     A L I +D + I++  L ++   +  +I    KLK+ 
Sbjct: 1151 GRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIA 1210

Query: 559  EKEIKI 576
            + ++ +
Sbjct: 1211 QSDVSV 1216

[30][TOP]
>UniRef100_Q5A0Z3 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5A0Z3_CANAL
          Length = 1448

 Score =  159 bits (402), Expect = 1e-37
 Identities = 87/186 (46%), Positives = 121/186 (65%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIG 198
            E + ++D   +K ++    ++S IS + ++ FL+ CL +Y   ++E GT +GAIGA SIG
Sbjct: 1035 EIVMDEDAVKVKAID----QLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIG 1090

Query: 199  EPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVK 378
            EPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII A+L  DD+   AR+ K
Sbjct: 1091 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDDDEIAARVAK 1150

Query: 379  GRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
            GRIEKT L  VA  I+ V     A L I +D + I++  L ++   +  +I    KLK+ 
Sbjct: 1151 GRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIA 1210

Query: 559  EKEIKI 576
            + ++ +
Sbjct: 1211 QSDVSV 1216

[31][TOP]
>UniRef100_C4YGE6 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YGE6_CANAL
          Length = 1448

 Score =  159 bits (402), Expect = 1e-37
 Identities = 87/186 (46%), Positives = 121/186 (65%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIG 198
            E + ++D   +K ++    ++S IS + ++ FL+ CL +Y   ++E GT +GAIGA SIG
Sbjct: 1035 EIVMDEDTVKVKAID----QLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIG 1090

Query: 199  EPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVK 378
            EPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII A+L  DD+   AR+ K
Sbjct: 1091 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDDDEIAARVAK 1150

Query: 379  GRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
            GRIEKT L  VA  I+ V     A L I +D + I++  L ++   +  +I    KLK+ 
Sbjct: 1151 GRIEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIA 1210

Query: 559  EKEIKI 576
            + ++ +
Sbjct: 1211 QSDVSV 1216

[32][TOP]
>UniRef100_Q6BI69 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Debaryomyces
            hansenii RepID=RPC1_DEBHA
          Length = 1457

 Score =  159 bits (402), Expect = 1e-37
 Identities = 85/169 (50%), Positives = 112/169 (66%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            I ++S +S   +  FL+ C+ +Y   K+E GT +GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1048 INQLSKVSANSINKFLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1107

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPII ++L  DD+   AR+VKGR+EKT L  VA  I+ 
Sbjct: 1108 SMNVTLGVPRIKEIINASKVISTPIINSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIED 1167

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            V  +  A L I +D   IE+  L ++  ++  SI    KLK+   ++ +
Sbjct: 1168 VYKNNMAYLSIKIDLNTIEKLQLELNIESIAHSIANAPKLKILAGDVSV 1216

[33][TOP]
>UniRef100_UPI000186E437 DNA-directed RNA polymerase III largest subunit, putative n=1
            Tax=Pediculus humanus corporis RepID=UPI000186E437
          Length = 1364

 Score =  159 bits (401), Expect = 2e-37
 Identities = 85/171 (49%), Positives = 115/171 (67%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            ++L ++   I +I  ++  Q+  F  IC  +Y   K+EAGT +GA+ A SIGEPGTQMTL
Sbjct: 992  RNLSDIPKAIIQIERLTVSQIVEFFQICRKKYLRAKVEAGTAVGALAAQSIGEPGTQMTL 1051

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMN+T GVPRI EIIN +  I TPIITA LE D +   AR VKGRIEKTTL
Sbjct: 1052 KTFHFAGVASMNITQGVPRIKEIINASKKISTPIITAYLENDSDAEFARRVKGRIEKTTL 1111

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKL 555
            G++++ I+ V       + + LD   I+   L +D+N++K + L T +LK+
Sbjct: 1112 GEISEYIEEVFLPDDFFIIVKLDVDRIKLLKLEVDANSIKYT-LCTARLKV 1161

[34][TOP]
>UniRef100_UPI0000D57400 PREDICTED: similar to AGAP004703-PA n=1 Tax=Tribolium castaneum
            RepID=UPI0000D57400
          Length = 1390

 Score =  159 bits (401), Expect = 2e-37
 Identities = 90/169 (53%), Positives = 111/169 (65%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            +  I  ++  QL  FL IC S+Y    IE GT +GA+ A SIGEPGTQMTLKTFHFAGVA
Sbjct: 1003 VKEIERLTCSQLVTFLQICGSKYTRSIIEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVA 1062

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMN+T GVPRI EIIN + +I TPIITA L    +I  AR VK RIE+TTLG+VA  I  
Sbjct: 1063 SMNITQGVPRIKEIINASKDISTPIITASLTNPRDIGFAREVKARIERTTLGEVATFIDE 1122

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            + T     L I L+   I+   L I++ TV+ SI  T KLKLK  E+++
Sbjct: 1123 IYTQYDCFLLIQLNYDRIKLLKLEINAETVRYSIC-TSKLKLKPNEVRV 1170

[35][TOP]
>UniRef100_Q5KFV9 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q5KFV9_CRYNE
          Length = 1466

 Score =  159 bits (401), Expect = 2e-37
 Identities = 89/184 (48%), Positives = 116/184 (63%)
 Frame = +1

Query: 25   ITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEP 204
            +  DDP   + L N     + ++  QL  FL+ C  RY   KIE G+ +GA+GA SIGEP
Sbjct: 1053 LNSDDPAVQRVLEN----ANKVTEAQLSSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEP 1108

Query: 205  GTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGR 384
            GTQMTLKTFHFAGVASMNVTLGVPRI EIIN A  I TPII A L   ++   AR+VKGR
Sbjct: 1109 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVISTPIIAAELAIPESETAARIVKGR 1168

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            IEKT LG +A  I+   T+ +A + + +D   +    L I   ++K ++++  KLK+ E 
Sbjct: 1169 IEKTVLGDIAAVIEESWTNANAYIEVHIDMDAVRRLQLEISLESIKWALVRANKLKIPEG 1228

Query: 565  EIKI 576
             I I
Sbjct: 1229 SIHI 1232

[36][TOP]
>UniRef100_Q55QA7 DNA-directed RNA polymerase n=1 Tax=Filobasidiella neoformans
            RepID=Q55QA7_CRYNE
          Length = 1466

 Score =  159 bits (401), Expect = 2e-37
 Identities = 89/184 (48%), Positives = 116/184 (63%)
 Frame = +1

Query: 25   ITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEP 204
            +  DDP   + L N     + ++  QL  FL+ C  RY   KIE G+ +GA+GA SIGEP
Sbjct: 1053 LNSDDPAVQRVLEN----ANKVTEAQLSSFLENCRIRYLRAKIEPGSTVGAVGAQSIGEP 1108

Query: 205  GTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGR 384
            GTQMTLKTFHFAGVASMNVTLGVPRI EIIN A  I TPII A L   ++   AR+VKGR
Sbjct: 1109 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKVISTPIIAAELAIPESETAARIVKGR 1168

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            IEKT LG +A  I+   T+ +A + + +D   +    L I   ++K ++++  KLK+ E 
Sbjct: 1169 IEKTVLGDIAAVIEESWTNANAYIEVHIDMDAVRRLQLEISLESIKWALVRANKLKIPEG 1228

Query: 565  EIKI 576
             I I
Sbjct: 1229 SIHI 1232

[37][TOP]
>UniRef100_A7TNS6 DNA-directed RNA polymerase n=1 Tax=Vanderwaltozyma polyspora DSM
            70294 RepID=A7TNS6_VANPO
          Length = 1460

 Score =  158 bits (399), Expect = 3e-37
 Identities = 81/170 (47%), Positives = 116/170 (68%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            + ++  I+ + +E FL+I +S+YR  ++E GT +GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1056 VEKLCKITEKTVEKFLEIAMSKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1115

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPII A+L  D++   AR+VKGRIEKT L  VA  ++ 
Sbjct: 1116 SMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDKRAARVVKGRIEKTLLSDVAYYVQD 1175

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            V     + L + +D   I++  L +    +  ++ +  KLK++  +++I+
Sbjct: 1176 VYKDNLSFLEVKIDLSTIDKLQLELTIEDIAVALTRAPKLKIQTTDVQIV 1225

[38][TOP]
>UniRef100_A4IHM8 DNA-directed RNA polymerase n=1 Tax=Xenopus (Silurana) tropicalis
            RepID=A4IHM8_XENTR
          Length = 1390

 Score =  157 bits (398), Expect = 4e-37
 Identities = 84/167 (50%), Positives = 116/167 (69%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1001 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1060

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN + NI TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1061 NITLGVPRIKEIINASKNISTPIITAHLDIDDDADFARLVKGRIEKTLLGEISEYIEEVF 1120

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  L + L  + I    L +++ TV+ SI  + KL++K  +I +
Sbjct: 1121 LPDDCFLLVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDIAV 1166

[39][TOP]
>UniRef100_C4R7G6 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R7G6_PICPG
          Length = 1460

 Score =  157 bits (398), Expect = 4e-37
 Identities = 86/186 (46%), Positives = 122/186 (65%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIG 198
            E+  ++ P H  +++  I ++  I+   +  FL++  ++Y   K+E GT +GAIGA SIG
Sbjct: 1036 ESFVDESPDH--SVSILINQLYRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGAQSIG 1093

Query: 199  EPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVK 378
            EPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII A+L  +D+   AR+VK
Sbjct: 1094 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTPIINAVLVNEDDERAARVVK 1153

Query: 379  GRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
            GRIEKT L  V   I+ V     A L + +D + IE   L ++ + ++ +I++  KLKL 
Sbjct: 1154 GRIEKTILQDVVYYIQDVYKENQAYLQVKVDLETIERLQLELNIDEIRLAIVKAPKLKLA 1213

Query: 559  EKEIKI 576
             +++ I
Sbjct: 1214 LEDVII 1219

[40][TOP]
>UniRef100_UPI00015A5DDB PREDICTED: im:7139382 n=1 Tax=Danio rerio RepID=UPI00015A5DDB
          Length = 1390

 Score =  157 bits (396), Expect = 7e-37
 Identities = 86/180 (47%), Positives = 120/180 (66%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            +PK L  L+   P        QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQM
Sbjct: 996  EPKVLYQLDRITPT-------QLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVASMN+TLGVPRI EIIN + NI TPII+A L+T+D+ + AR+VKGRIEKT
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIISANLDTNDDPDFARLVKGRIEKT 1108

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
             LG++++ I+ V       + + L    I    L +++ TV+ SI  T KL++K  ++++
Sbjct: 1109 LLGEISEYIEEVFLPDDTFILVKLSLDRIRLLRLEVNAETVRYSIC-TSKLRVKPGDVQV 1167

[41][TOP]
>UniRef100_UPI00015B5AFA PREDICTED: hypothetical protein n=1 Tax=Nasonia vitripennis
            RepID=UPI00015B5AFA
          Length = 1372

 Score =  156 bits (395), Expect = 1e-36
 Identities = 89/180 (49%), Positives = 114/180 (63%), Gaps = 2/180 (1%)
 Frame = +1

Query: 43   KHLKNLNN--FIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            +H+K+ +N      I  ++  QL  F+  C  +Y   KIE GT +GA+ A SIGEPGTQM
Sbjct: 973  QHIKSNDNQPVYKYIERLTVSQLAEFIHTCKEKYMKAKIEPGTAVGALAAQSIGEPGTQM 1032

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVASMN+T GVPRI EIIN    I TPIITA LE D +   AR VKGRIEKT
Sbjct: 1033 TLKTFHFAGVASMNITQGVPRIKEIINANPKISTPIITAALENDTDPEFARRVKGRIEKT 1092

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            TLG++ + I+ V       L + +D   ++   L +D N+++ S L T KLKL  K + I
Sbjct: 1093 TLGEITEYIEEVYLPDDCFLLLKIDIDRVKLLKLEVDVNSIRYS-LCTSKLKLNPKNVVI 1151

[42][TOP]
>UniRef100_UPI0000DA3EBF PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            A, 155kDa n=1 Tax=Rattus norvegicus RepID=UPI0000DA3EBF
          Length = 1390

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/167 (49%), Positives = 116/167 (69%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+R Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1167

[43][TOP]
>UniRef100_UPI0000DA3DE9 PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            A, 155kDa n=2 Tax=Rattus norvegicus RepID=UPI0000DA3DE9
          Length = 1362

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/167 (49%), Positives = 116/167 (69%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+R Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1167

[44][TOP]
>UniRef100_Q5RK26 Polr3a protein (Fragment) n=1 Tax=Rattus norvegicus
           RepID=Q5RK26_RAT
          Length = 491

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/167 (49%), Positives = 116/167 (69%)
 Frame = +1

Query: 76  RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
           ++  I+R Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 103 QLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 162

Query: 256 NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
           N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 163 NITLGVPRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVF 222

Query: 436 TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                 + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 223 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 268

[45][TOP]
>UniRef100_C7GMM0 Rpo31p n=1 Tax=Saccharomyces cerevisiae JAY291 RepID=C7GMM0_YEAS2
          Length = 1460

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/175 (46%), Positives = 115/175 (65%)
 Frame = +1

Query: 55   NLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFH 234
            N+   + ++  IS + +  FL+I L +YR  ++E GT IGAIGA SIGEPGTQMTLKTFH
Sbjct: 1051 NVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFH 1110

Query: 235  FAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVA 414
            FAGVASMNVTLGVPRI EIIN +  I TPII A+L  D++   AR+VKGR+EKT L  VA
Sbjct: 1111 FAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVA 1170

Query: 415  KSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              ++ V     + + + +D   I++  L +    +  +I +  KLK++  ++ I+
Sbjct: 1171 FYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNII 1225

[46][TOP]
>UniRef100_B3LJF9 DNA-directed RNA polymerase n=3 Tax=Saccharomyces cerevisiae
            RepID=B3LJF9_YEAS1
          Length = 1460

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/175 (46%), Positives = 115/175 (65%)
 Frame = +1

Query: 55   NLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFH 234
            N+   + ++  IS + +  FL+I L +YR  ++E GT IGAIGA SIGEPGTQMTLKTFH
Sbjct: 1051 NVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFH 1110

Query: 235  FAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVA 414
            FAGVASMNVTLGVPRI EIIN +  I TPII A+L  D++   AR+VKGR+EKT L  VA
Sbjct: 1111 FAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVA 1170

Query: 415  KSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              ++ V     + + + +D   I++  L +    +  +I +  KLK++  ++ I+
Sbjct: 1171 FYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNII 1225

[47][TOP]
>UniRef100_P04051 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Saccharomyces
            cerevisiae RepID=RPC1_YEAST
          Length = 1460

 Score =  156 bits (395), Expect = 1e-36
 Identities = 82/175 (46%), Positives = 115/175 (65%)
 Frame = +1

Query: 55   NLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFH 234
            N+   + ++  IS + +  FL+I L +YR  ++E GT IGAIGA SIGEPGTQMTLKTFH
Sbjct: 1051 NVKTSVSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFH 1110

Query: 235  FAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVA 414
            FAGVASMNVTLGVPRI EIIN +  I TPII A+L  D++   AR+VKGR+EKT L  VA
Sbjct: 1111 FAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVA 1170

Query: 415  KSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              ++ V     + + + +D   I++  L +    +  +I +  KLK++  ++ I+
Sbjct: 1171 FYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNII 1225

[48][TOP]
>UniRef100_UPI00016E6B79 UPI00016E6B79 related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E6B79
          Length = 1390

 Score =  156 bits (394), Expect = 1e-36
 Identities = 86/180 (47%), Positives = 119/180 (66%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            +PK L  L+   P        QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQM
Sbjct: 996  EPKVLYQLDRITPT-------QLERFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1048

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVASMN+TLGVPRI EIIN + NI TPIITA L+ +D+ + AR+VKGRIEKT
Sbjct: 1049 TLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKT 1108

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
             LG++++ I+ V       + + L  + I    L +++ TV+ SI  + KL++K  +I +
Sbjct: 1109 LLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDIAV 1167

[49][TOP]
>UniRef100_A3GEY3 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GEY3_PICST
          Length = 1448

 Score =  156 bits (394), Expect = 1e-36
 Identities = 85/171 (49%), Positives = 112/171 (65%)
 Frame = +1

Query: 64   NFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAG 243
            N + ++  IS + +E FL+  L +Y   K+E GT +GAIGA SIGEPGTQMTLKTFHFAG
Sbjct: 1047 NAVDQLLKISSKTIEKFLEQSLYKYSKAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1106

Query: 244  VASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSI 423
            VASMNVTLGVPRI EIIN +  I TPII ++L  DD+   AR+VKGR+EKT L  VA  I
Sbjct: 1107 VASMNVTLGVPRIKEIINASKTISTPIINSVLVNDDDEIAARVVKGRVEKTLLKDVAFFI 1166

Query: 424  KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            + V  +  A L I +D   IE+  L +  + +  +I    KLK+   ++ +
Sbjct: 1167 EDVYKNEMAYLSIKIDMSTIEKLQLELTIDDIVTAIHNAPKLKISPGDVSV 1217

[50][TOP]
>UniRef100_Q4P157 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P157_USTMA
          Length = 1400

 Score =  155 bits (392), Expect = 2e-36
 Identities = 82/156 (52%), Positives = 108/156 (69%)
 Frame = +1

Query: 112  FLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEI 291
            FL+ C  +Y   KIE G+ +GA+GA SIGEPGTQMTLKTFHFAGVASMNVTLGVPRI EI
Sbjct: 1033 FLEQCYIKYMKAKIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEI 1092

Query: 292  INGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLD 471
            IN A  I TPII A L ++ +   AR+VKGRIEKT LG +A  I+    ++   L + +D
Sbjct: 1093 INAAKVINTPIIEAKLVSEKSERAARIVKGRIEKTYLGDIASVIEEAWAAQYTYLGVHID 1152

Query: 472  EKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
             + I++  L I  N +K +I+   KLK+KE+ + ++
Sbjct: 1153 MEAIQKLQLEITLNDIKWAIVNAPKLKIKEERVMVV 1188

[51][TOP]
>UniRef100_A8PGH2 DNA-directed RNA polymerase n=1 Tax=Coprinopsis cinerea okayama7#130
            RepID=A8PGH2_COPC7
          Length = 1403

 Score =  155 bits (392), Expect = 2e-36
 Identities = 83/164 (50%), Positives = 109/164 (66%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++   L +FLDIC  RY   +IE G+ +GA+GA SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1023 VTESHLRIFLDICWERYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1082

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A  I TPII+  L T D+   AR+VKGR+EKT LG V   ++       
Sbjct: 1083 GVPRIKEIINAAKAISTPIISCKLVTPDSEPSARIVKGRLEKTLLGDVVSVLEEAWAPDY 1142

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              + I +D   I++  L +  + +K +I+   KLK+K++ I I+
Sbjct: 1143 TYIGIIVDVDAIQKLQLELTLDDIKWAIVAAKKLKIKQESITII 1186

[52][TOP]
>UniRef100_Q6CMC7 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
            RepID=Q6CMC7_KLULA
          Length = 1457

 Score =  155 bits (391), Expect = 3e-36
 Identities = 82/164 (50%), Positives = 110/164 (67%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            IS+  ++ FL I +S+Y   ++E GT +GAIGA SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1060 ISKILVQKFLSIAISKYHRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1119

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TPII A+L  D++   AR+VKGR+EKT L  V+  ++ +     
Sbjct: 1120 GVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVSFYVQDIYRDNM 1179

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            A L I +D + IE+  L +    +  +I +  KLK+   +I I+
Sbjct: 1180 AFLQIKIDSETIEKLQLELTLEDIVVAIAKAPKLKIGTNDISII 1223

[53][TOP]
>UniRef100_UPI00017B08B5 UPI00017B08B5 related cluster n=1 Tax=Tetraodon nigroviridis
            RepID=UPI00017B08B5
          Length = 1391

 Score =  154 bits (390), Expect = 4e-36
 Identities = 85/174 (48%), Positives = 116/174 (66%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            +PK L  L+   P        QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQM
Sbjct: 998  EPKVLYQLDRITPT-------QLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1050

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVASMN+TLGVPRI EIIN + NI TPIITA L+ +D+ + AR+VKGRIEKT
Sbjct: 1051 TLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKT 1110

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
             LG++++ I+ V       + + L  + I    L +++ TV+ SI  + KL++K
Sbjct: 1111 LLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVK 1163

[54][TOP]
>UniRef100_A8Q6K6 DNA-directed RNA polymerase n=1 Tax=Malassezia globosa CBS 7966
            RepID=A8Q6K6_MALGO
          Length = 1376

 Score =  154 bits (390), Expect = 4e-36
 Identities = 81/164 (49%), Positives = 110/164 (67%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S   +  F+++C  +Y   KIE G+ +GA+GA SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1003 VSEATILEFINLCWDKYMRAKIEPGSAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1062

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A  I TPII A L ++ +   AR+VKGRIEKT LG VA  I+   +   
Sbjct: 1063 GVPRIKEIINAAKVINTPIIAATLVSEKSEQAARIVKGRIEKTYLGDVASVIEEAWSGTY 1122

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              + I +D   I++  L +  + +K +I+   ++K+KE+ I +L
Sbjct: 1123 TYIGIDIDTAAIQKLQLEVTLDDIKRAIVAMPRMKIKEERIIVL 1166

[55][TOP]
>UniRef100_Q5CWY0 DNA-directed RNA polymerase n=2 Tax=Cryptosporidium parvum
            RepID=Q5CWY0_CRYPV
          Length = 1871

 Score =  154 bits (389), Expect = 5e-36
 Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            I+ RQL  F+    S+Y     E G  +GAI A SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1437 ITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1496

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A+ I TPII A LE D + N A++VKG I KT L +V   I+ + +   
Sbjct: 1497 GVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPNG 1556

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTG---KLKLKEKEIKIL 579
              + I+L+E+ I+  YL+I++ TV++SI+  G   K+KLK ++I++L
Sbjct: 1557 VFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVL 1603

[56][TOP]
>UniRef100_Q5CK97 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium hominis
            RepID=Q5CK97_CRYHO
          Length = 1869

 Score =  154 bits (389), Expect = 5e-36
 Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            I+ RQL  F+    S+Y     E G  +GAI A SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1435 ITIRQLYEFIKASWSKYMKAITEPGEAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1494

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A+ I TPII A LE D + N A++VKG I KT L +V   I+ + +   
Sbjct: 1495 GVPRIKEIINAATKILTPIIEAKLENDSDFNYAQIVKGSIVKTLLNEVVSDIEELYSPNG 1554

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTG---KLKLKEKEIKIL 579
              + I+L+E+ I+  YL+I++ TV++SI+  G   K+KLK ++I++L
Sbjct: 1555 VFININLNEETIKGHYLDINAYTVRDSIVSHGPISKIKLKLEDIQVL 1601

[57][TOP]
>UniRef100_C5DJG5 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
            RepID=C5DJG5_LACTC
          Length = 1460

 Score =  154 bits (389), Expect = 5e-36
 Identities = 82/170 (48%), Positives = 112/170 (65%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            + ++  IS + +  FL+I + +Y   K+E GT +GA+GAHSIGEPGTQMTLKTFHFAGVA
Sbjct: 1055 VDQLCKISSKLVLKFLEIAIFKYHKAKVEPGTAVGAVGAHSIGEPGTQMTLKTFHFAGVA 1114

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPII A+L  +++   AR+VKGRIEKT L  VA  I+ 
Sbjct: 1115 SMNVTLGVPRIKEIINASKVISTPIINAVLVNNNDERAARVVKGRIEKTLLSDVAFYIQD 1174

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            V     + L + +D   IE+  L +    +  +I +  KLK+   ++ I+
Sbjct: 1175 VYKDNMSFLQVKVDLGTIEKLQLELTVEDIAVAITRAAKLKIAASDVSIM 1224

[58][TOP]
>UniRef100_UPI000155D900 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
            n=1 Tax=Equus caballus RepID=UPI000155D900
          Length = 1390

 Score =  154 bits (388), Expect = 6e-36
 Identities = 81/167 (48%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDRDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1167

[59][TOP]
>UniRef100_UPI0001554E8D PREDICTED: similar to Polymerase (RNA) III (DNA directed) polypeptide
            A, 155kDa n=1 Tax=Ornithorhynchus anatinus
            RepID=UPI0001554E8D
          Length = 1382

 Score =  154 bits (388), Expect = 6e-36
 Identities = 81/167 (48%), Positives = 116/167 (69%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 994  QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1053

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L++DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1054 NITLGVPRIKEIINASKAISTPIITAQLDSDDDSDFARLVKGRIEKTLLGEISEYIEEVF 1113

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  + KL++K  ++ +
Sbjct: 1114 LPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAV 1159

[60][TOP]
>UniRef100_UPI0000F2AF25 PREDICTED: similar to Proteasome (prosome, macropain) subunit, alpha
            type, 2 n=1 Tax=Monodelphis domestica RepID=UPI0000F2AF25
          Length = 1390

 Score =  154 bits (388), Expect = 6e-36
 Identities = 81/167 (48%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDQDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1167

[61][TOP]
>UniRef100_B2RXC6 DNA-directed RNA polymerase n=1 Tax=Mus musculus RepID=B2RXC6_MOUSE
          Length = 1390

 Score =  154 bits (388), Expect = 6e-36
 Identities = 81/167 (48%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1167

[62][TOP]
>UniRef100_B0DK21 DNA-directed RNA polymerase n=1 Tax=Laccaria bicolor S238N-H82
            RepID=B0DK21_LACBS
          Length = 1397

 Score =  154 bits (388), Expect = 6e-36
 Identities = 81/166 (48%), Positives = 110/166 (66%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNV 261
            S ++  QL  FLD+C  +Y   +IE G+ +GA+GA SIGEPGTQMTLKTFHFAGVASMNV
Sbjct: 1016 SKVTESQLRKFLDLCWVKYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNV 1075

Query: 262  TLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            TLGVPRI EIIN A  I TPII+  L T D+   AR+VK R+EKT LG +A  ++     
Sbjct: 1076 TLGVPRIKEIINAAKAISTPIISCKLVTSDSEASARIVKARLEKTLLGDIASVLEEAWAP 1135

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
                + I +D   I++  L +  + +K +I+   KLK+K++ I ++
Sbjct: 1136 EYTYIGIIVDVNAIQKLQLELTLDDIKWAIVNAKKLKIKQESITVM 1181

[63][TOP]
>UniRef100_UPI0000E22532 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
            n=1 Tax=Pan troglodytes RepID=UPI0000E22532
          Length = 1349

 Score =  153 bits (387), Expect = 8e-36
 Identities = 81/167 (48%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 961  QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1020

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1021 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1080

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1081 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1126

[64][TOP]
>UniRef100_O14802 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Homo sapiens
            RepID=RPC1_HUMAN
          Length = 1390

 Score =  153 bits (387), Expect = 8e-36
 Identities = 81/167 (48%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1167

[65][TOP]
>UniRef100_Q6FKG9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FKG9_CANGA
          Length = 1459

 Score =  153 bits (386), Expect = 1e-35
 Identities = 82/170 (48%), Positives = 112/170 (65%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            I ++  I+   ++ FL+I +S+Y   K+E GT +GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1055 ITQLYRITEDAVQKFLEIAISKYHRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1114

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            SMNVTLGVPRI EIIN +  I TPII A+L  +++   AR+VKGRIEKT L  V   I+ 
Sbjct: 1115 SMNVTLGVPRIKEIINASKVISTPIINAVLVNNNDERAARVVKGRIEKTLLSDVCYYIQD 1174

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            V     A L + +D   I++  L +    +  +I +  KLK++  ++ +L
Sbjct: 1175 VYKENMAYLQVKVDLNTIDKLQLELTIEDIAIAITRAPKLKIQTSDVTVL 1224

[66][TOP]
>UniRef100_UPI00017EFF90 PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            A, 155kDa n=1 Tax=Sus scrofa RepID=UPI00017EFF90
          Length = 1390

 Score =  152 bits (385), Expect = 1e-35
 Identities = 81/167 (48%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + I L  + I    L +++ TV+ SI  + KL++K  ++ +
Sbjct: 1122 LPDDCFILIKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAV 1167

[67][TOP]
>UniRef100_Q8TCW3 DNA-directed RNA polymerase (Fragment) n=1 Tax=Homo sapiens
           RepID=Q8TCW3_HUMAN
          Length = 435

 Score =  152 bits (385), Expect = 1e-35
 Identities = 81/165 (49%), Positives = 114/165 (69%)
 Frame = +1

Query: 76  RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
           ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 271 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 330

Query: 256 NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
           N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 331 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 390

Query: 436 TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEI 570
                 + + L  + I    L +++ TV+ SI  T KL++K  ++
Sbjct: 391 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDV 434

[68][TOP]
>UniRef100_UPI000194E725 PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
           155kDa, partial n=1 Tax=Taeniopygia guttata
           RepID=UPI000194E725
          Length = 346

 Score =  152 bits (384), Expect = 2e-35
 Identities = 81/167 (48%), Positives = 114/167 (68%)
 Frame = +1

Query: 76  RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
           ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 73  QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 132

Query: 256 NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
           N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 133 NITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVF 192

Query: 436 TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                 + + L  + I    L +++ TV+ SI    KL++K  ++ +
Sbjct: 193 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-VSKLRVKPGDVAV 238

[69][TOP]
>UniRef100_UPI000194C79C PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa
            n=1 Tax=Taeniopygia guttata RepID=UPI000194C79C
          Length = 1390

 Score =  152 bits (384), Expect = 2e-35
 Identities = 81/167 (48%), Positives = 114/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI    KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-VSKLRVKPGDVAV 1167

[70][TOP]
>UniRef100_UPI00004BFD05 PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            A, 155kDa n=1 Tax=Canis lupus familiaris
            RepID=UPI00004BFD05
          Length = 1390

 Score =  152 bits (384), Expect = 2e-35
 Identities = 80/167 (47%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  + KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAV 1167

[71][TOP]
>UniRef100_UPI0000EB3E23 DNA-directed RNA polymerase III subunit RPC1 (EC 2.7.7.6) (RNA
            polymerase III subunit C1) (DNA-directed RNA polymerase
            III subunit A) (DNA-directed RNA polymerase III largest
            subunit) (RPC155) (C160). n=1 Tax=Canis lupus familiaris
            RepID=UPI0000EB3E23
          Length = 1393

 Score =  152 bits (384), Expect = 2e-35
 Identities = 80/167 (47%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1005 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1064

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1065 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1124

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  + KL++K  ++ +
Sbjct: 1125 LPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAV 1170

[72][TOP]
>UniRef100_UPI0000612BF9 UPI0000612BF9 related cluster n=1 Tax=Bos taurus RepID=UPI0000612BF9
          Length = 1392

 Score =  152 bits (384), Expect = 2e-35
 Identities = 80/167 (47%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1004 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1063

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1064 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1123

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  + KL++K  ++ +
Sbjct: 1124 LPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAV 1169

[73][TOP]
>UniRef100_A4IF62 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Bos taurus
            RepID=RPC1_BOVIN
          Length = 1390

 Score =  152 bits (384), Expect = 2e-35
 Identities = 80/167 (47%), Positives = 115/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  + KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSICMS-KLRVKPGDVAV 1167

[74][TOP]
>UniRef100_UPI00003AE23E polymerase (RNA) III (DNA directed) polypeptide A, 155kDa n=1
            Tax=Gallus gallus RepID=UPI00003AE23E
          Length = 1390

 Score =  152 bits (383), Expect = 2e-35
 Identities = 81/167 (48%), Positives = 114/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI    KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-ISKLRVKPGDVAV 1167

[75][TOP]
>UniRef100_Q16SE0 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti RepID=Q16SE0_AEDAE
          Length = 1298

 Score =  152 bits (383), Expect = 2e-35
 Identities = 84/178 (47%), Positives = 113/178 (63%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            K  ++ +     +   +R QLE FL    ++Y     E GT +GA+ A SIGEPGTQMTL
Sbjct: 906  KRYRHCSKVSLEVERTTRGQLEAFLTQVRNKYNKAITEPGTAVGALAAQSIGEPGTQMTL 965

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMN+T GVPRI+EIIN    I TPIITA +E + ++  AR VK RIEKTTL
Sbjct: 966  KTFHFAGVASMNITQGVPRIVEIINATKAISTPIITAEIEDNTSMEFARKVKARIEKTTL 1025

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            G+++  I+    S    L I LD   I    L +++ T++ SI  T KLKLK++ +++
Sbjct: 1026 GEISSYIEEAYKSDDCFLLIKLDLDRIRVLGLEVNAETIRYSIC-TSKLKLKQENVEV 1082

[76][TOP]
>UniRef100_Q16PD2 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti RepID=Q16PD2_AEDAE
          Length = 1298

 Score =  152 bits (383), Expect = 2e-35
 Identities = 84/178 (47%), Positives = 113/178 (63%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            K  ++ +     +   +R QLE FL    ++Y     E GT +GA+ A SIGEPGTQMTL
Sbjct: 906  KRYRHCSKVSLEVERTTRGQLEAFLTQVRNKYNKAITEPGTAVGALAAQSIGEPGTQMTL 965

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMN+T GVPRI+EIIN    I TPIITA +E + ++  AR VK RIEKTTL
Sbjct: 966  KTFHFAGVASMNITQGVPRIVEIINATKAISTPIITAEIEDNTSMEFARKVKARIEKTTL 1025

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            G+++  I+    S    L I LD   I    L +++ T++ SI  T KLKLK++ +++
Sbjct: 1026 GEISSYIEEAYKSDDCFLLIKLDLDRIRVLGLEVNAETIRYSIC-TSKLKLKQENVEV 1082

[77][TOP]
>UniRef100_A2DEX5 DNA-directed RNA polymerase n=1 Tax=Trichomonas vaginalis G3
            RepID=A2DEX5_TRIVA
          Length = 1657

 Score =  152 bits (383), Expect = 2e-35
 Identities = 82/170 (48%), Positives = 112/170 (65%)
 Frame = +1

Query: 55   NLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFH 234
            +++++I      ++  LE F+  C+ R      E G  +GA+   SIGEP TQMTL++FH
Sbjct: 968  SMDSYIRATIPFTKSFLEEFVKFCMHRCEKSMAEPGMTVGAVAGQSIGEPATQMTLRSFH 1027

Query: 235  FAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVA 414
            FAGVASMNVTLGVPRI E++N  S IKTPIITA L +  +   AR+VKG I++ TLGQV 
Sbjct: 1028 FAGVASMNVTLGVPRIEEVMNAVSEIKTPIITANLLSQRDEIAARIVKGIIDRVTLGQVC 1087

Query: 415  KSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            K I+     +S  + I LD +II EA LNI S TV+ SI+ T K+ +K++
Sbjct: 1088 KHIEYNQNEKSCYIDIELDAEIIREAKLNITSETVRRSIVNTPKIGVKDE 1137

[78][TOP]
>UniRef100_Q5ZL98 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Gallus gallus
            RepID=RPC1_CHICK
          Length = 1390

 Score =  152 bits (383), Expect = 2e-35
 Identities = 81/167 (48%), Positives = 114/167 (68%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1002 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1062 NITLGVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI    KL++K  ++ +
Sbjct: 1122 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-ISKLRVKPGDVAV 1167

[79][TOP]
>UniRef100_B7G2E6 DNA-directed RNA polymerase n=1 Tax=Phaeodactylum tricornutum CCAP
            1055/1 RepID=B7G2E6_PHATR
          Length = 1281

 Score =  151 bits (382), Expect = 3e-35
 Identities = 85/166 (51%), Positives = 110/166 (66%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNV 261
            S ++  QLE+ L   L +     +E G  +GAIGA SI EPGTQMTLKTFHF+G++SMNV
Sbjct: 940  SRMTETQLELLLTEALDKCMLAYVEPGEAVGAIGAQSISEPGTQMTLKTFHFSGISSMNV 999

Query: 262  TLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            TLGVPR+ EIIN A  I TPIITA LE D+N   AR+VK  IEKTTLG+V+K +K V   
Sbjct: 1000 TLGVPRLKEIINAAKLISTPIITAKLECDNNKVAARIVKAVIEKTTLGEVSKYMKEVYAP 1059

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
             S  + + LD   IE+  LN+D ++V+ SIL   K   K   +++L
Sbjct: 1060 GSCYISVELDMDAIEQLKLNVDVHSVRRSILYGTKGIAKNAGMQML 1105

[80][TOP]
>UniRef100_B4L5G1 DNA-directed RNA polymerase n=1 Tax=Drosophila mojavensis
            RepID=B4L5G1_DROMO
          Length = 1382

 Score =  151 bits (382), Expect = 3e-35
 Identities = 87/186 (46%), Positives = 120/186 (64%)
 Frame = +1

Query: 13   LTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHS 192
            +T+ I++   K+     +   +I  ISR QL  FL     RY     E GT +GAI A S
Sbjct: 974  VTKRISKLQEKYGAEHKDLCKQIECISREQLLEFLRRINDRYNRAVTEPGTAVGAIAAQS 1033

Query: 193  IGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARM 372
            IGEPGTQMTLKTFHFAGVASMN+T GVPRI+EIIN    I TPIITA L  + ++  AR 
Sbjct: 1034 IGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELRNNTSMEFARQ 1093

Query: 373  VKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            VK RIEKTTLG+++  +++V   +S  L I +D   I+   L+ID +++  SIL++ +L+
Sbjct: 1094 VKARIEKTTLGELSSFVELVCGPQSCHLVIGIDTARIKVLGLHIDLDSIMCSILKS-RLR 1152

Query: 553  LKEKEI 570
            +K  ++
Sbjct: 1153 IKANQL 1158

[81][TOP]
>UniRef100_UPI0001A2B922 UPI0001A2B922 related cluster n=1 Tax=Danio rerio
           RepID=UPI0001A2B922
          Length = 438

 Score =  151 bits (381), Expect = 4e-35
 Identities = 86/182 (47%), Positives = 123/182 (67%), Gaps = 3/182 (1%)
 Frame = +1

Query: 37  DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
           +PK L  L+   P        QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQM
Sbjct: 265 EPKVLYQLDRITPT-------QLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 317

Query: 217 TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
           TLKTFHFAGVASMN+TLGVPRI EIIN + NI TPII+A L+T+D+ + AR+VKGRIEKT
Sbjct: 318 TLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIISANLDTNDDPDFARLVKGRIEKT 377

Query: 397 TLGQVAKSIKVVATSRSAALFI--SLDE-KIIEEAYLNIDSNTVKESILQTGKLKLKEKE 567
            LG++++ I+ V       + +  SLD  +++    + +++ TV+ SI  T KL++K  +
Sbjct: 378 LLGEISEYIEEVFLPDDTFILVKLSLDRIRLLCFCCVQVNAETVRYSIC-TSKLRVKPGD 436

Query: 568 IK 573
           ++
Sbjct: 437 VQ 438

[82][TOP]
>UniRef100_Q7PMU6 DNA-directed RNA polymerase n=1 Tax=Anopheles gambiae
            RepID=Q7PMU6_ANOGA
          Length = 1379

 Score =  151 bits (381), Expect = 4e-35
 Identities = 83/159 (52%), Positives = 107/159 (67%)
 Frame = +1

Query: 100  QLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 279
            QLE FL    ++Y     E GT +GA+ A SIGEPGTQMTLKTFHFAGVASMN+T GVPR
Sbjct: 1006 QLEEFLLQVRNKYNKAVTEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1065

Query: 280  IMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALF 459
            I+EIIN    I TPIITA +E + N+  AR VK RIEKTTLG+++  I+ V       L 
Sbjct: 1066 IVEIINATKAISTPIITAEIENNTNMEFARKVKARIEKTTLGEISSYIEEVYKMNECFLL 1125

Query: 460  ISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            I LD   I    L ++++T++ SI  T KLKLK++ +++
Sbjct: 1126 IKLDLGRIRVLGLEVNADTIRYSIC-TSKLKLKQENVEV 1163

[83][TOP]
>UniRef100_C5DY31 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
            RepID=C5DY31_ZYGRC
          Length = 1458

 Score =  151 bits (381), Expect = 4e-35
 Identities = 83/193 (43%), Positives = 120/193 (62%)
 Frame = +1

Query: 1    ENTKLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAI 180
            ++  L E + ED       + + + ++  I+ + +  FL + + +YR  K+E GT +GAI
Sbjct: 1038 QSVDLDENVPED-------IRHSVDQVYRITDKMVREFLRVAILKYRRAKVEPGTAVGAI 1090

Query: 181  GAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNIN 360
            GA SIGEPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII A+L  + +  
Sbjct: 1091 GAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVLVNESDER 1150

Query: 361  IARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQT 540
             AR+VKGRIEKT L  VA  I+ V     + L + +D   I++  L +    +  ++ + 
Sbjct: 1151 AARVVKGRIEKTLLSDVAFYIQDVYRDNLSYLQVRVDLSTIDKLQLELTIEDIAVAMTRA 1210

Query: 541  GKLKLKEKEIKIL 579
             KLK++  ++ I+
Sbjct: 1211 PKLKIQASDVHIV 1223

[84][TOP]
>UniRef100_B8C4M1 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8C4M1_THAPS
          Length = 1422

 Score =  150 bits (379), Expect = 7e-35
 Identities = 83/146 (56%), Positives = 101/146 (69%)
 Frame = +1

Query: 100  QLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 279
            Q+  FL   LS+Y    +E G  +GAIGA SI EPGTQMTLKTFHFAGV+SMNVTLGVPR
Sbjct: 1033 QVNEFLKTALSKYTKAMVEPGEAVGAIGAQSISEPGTQMTLKTFHFAGVSSMNVTLGVPR 1092

Query: 280  IMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALF 459
            + EIIN + NI TPIITA L  DDN   AR+VK  IEKTTLG+++  +K V +S    L 
Sbjct: 1093 LKEIINASKNISTPIITAKLVQDDNKVGARIVKAGIEKTTLGEISIYVKEVYSSGDCYLS 1152

Query: 460  ISLDEKIIEEAYLNIDSNTVKESILQ 537
            I LD   I +  LNID+ +V+  IL+
Sbjct: 1153 ILLDMDAIRQLRLNIDAVSVRRCILK 1178

[85][TOP]
>UniRef100_B9PZ91 DNA-directed RNA polymerase n=1 Tax=Toxoplasma gondii GT1
            RepID=B9PZ91_TOXGO
          Length = 1747

 Score =  149 bits (377), Expect = 1e-34
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++ R +  FL     +Y     EAG  +GA+GA SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1356 VTVRHILEFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1415

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A  I+TPII   L  D++ N A MVK RIEKT L +    IK V     
Sbjct: 1416 GVPRIKEIINAAQKIQTPIIVVPLVNDEDYNYAVMVKNRIEKTLLSECCSYIKEVYAPDG 1475

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQ---TGKLKLKEKEIKIL 579
            A L + LD+  I + +L+I++NTVK++IL+     K+++ +  ++I+
Sbjct: 1476 AWLVVKLDQHTIRKLFLDINANTVKDAILRQTAVNKVRITKNSVEII 1522

[86][TOP]
>UniRef100_B6KRB8 DNA-directed RNA polymerase n=2 Tax=Toxoplasma gondii
            RepID=B6KRB8_TOXGO
          Length = 1746

 Score =  149 bits (377), Expect = 1e-34
 Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++ R +  FL     +Y     EAG  +GA+GA SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1355 VTVRHILEFLRCSWRKYVKAISEAGEAVGAMGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1414

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A  I+TPII   L  D++ N A MVK RIEKT L +    IK V     
Sbjct: 1415 GVPRIKEIINAAQKIQTPIIVVPLVNDEDYNYAVMVKNRIEKTLLSECCSYIKEVYAPDG 1474

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQ---TGKLKLKEKEIKIL 579
            A L + LD+  I + +L+I++NTVK++IL+     K+++ +  ++I+
Sbjct: 1475 AWLVVKLDQHTIRKLFLDINANTVKDAILRQTAVNKVRITKNSVEII 1521

[87][TOP]
>UniRef100_B6AIF4 DNA-directed RNA polymerase n=1 Tax=Cryptosporidium muris RN66
            RepID=B6AIF4_9CRYT
          Length = 1803

 Score =  149 bits (377), Expect = 1e-34
 Identities = 86/167 (51%), Positives = 112/167 (67%), Gaps = 3/167 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            I+ R L  F+ +C  +Y    ++ G  +GAI A SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1386 ITVRHLYEFISLCWLKYMKAIVQPGDAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNVTL 1445

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A+ I TPII A L+   +   A+MVKG+I K  L +V   I+ V + + 
Sbjct: 1446 GVPRIKEIINAATKILTPIIQAPLKNPWDYKCAQMVKGKIVKYLLREVCTHIEEVYSPQG 1505

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTG---KLKLKEKEIKIL 579
              L I L EK I+  YL+I++ TV++SI   G   KL+LKE +I+I+
Sbjct: 1506 VCLNIYLCEKTIQNLYLDINAYTVRDSIYSHGQICKLRLKEGDIQII 1552

[88][TOP]
>UniRef100_B4JN80 DNA-directed RNA polymerase n=1 Tax=Drosophila grimshawi
            RepID=B4JN80_DROGR
          Length = 1303

 Score =  149 bits (376), Expect = 2e-34
 Identities = 84/165 (50%), Positives = 111/165 (67%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            +I  IS+ QL  FL     RY     E GT +GAI A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 916  QIESISQEQLLEFLRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASM 975

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+T GVPRI+EIIN   +I TPIITA L  + ++  AR VK RIEKTTLG+++  +++V 
Sbjct: 976  NITQGVPRIVEIINATKSISTPIITAELRNNKSMEFARQVKARIEKTTLGELSSYVELVC 1035

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEI 570
               S  L I++D   I+   L ID +T+  SIL++ +L++K  ++
Sbjct: 1036 GPYSCHLVINIDAARIKVLGLYIDLDTIIASILKS-RLRIKPGQV 1079

[89][TOP]
>UniRef100_B3MLS5 DNA-directed RNA polymerase n=1 Tax=Drosophila ananassae
            RepID=B3MLS5_DROAN
          Length = 1301

 Score =  149 bits (375), Expect = 2e-34
 Identities = 89/200 (44%), Positives = 121/200 (60%), Gaps = 14/200 (7%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLN--------------NFIPRISGISRRQLEVFLDICLSRYRFKKIE 156
            E   ED  KHLK ++              N   +I  ++  QL  FL     RY     E
Sbjct: 882  EDFKEDVRKHLKTVSKRISLLQEKYDPYGNLCNQIECLTTEQLLEFLRRINDRYNRAVTE 941

Query: 157  AGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAI 336
             GT +GAI A SIGEPGTQMTLKTFHFAGVASMN+T GVPRI+EIIN    I TPIITA 
Sbjct: 942  PGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAE 1001

Query: 337  LETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNT 516
            L+ + ++  AR VK RIEKTTLG+++  ++VV       L I +D   I+   L+I+ +T
Sbjct: 1002 LQDNLSMEFARQVKARIEKTTLGELSSYVEVVCGPHCCYLAIGIDMSRIKLLGLHINLDT 1061

Query: 517  VKESILQTGKLKLKEKEIKI 576
            +  SIL++ +++LK  ++++
Sbjct: 1062 IVASILKS-RMRLKPAQVEV 1080

[90][TOP]
>UniRef100_A7EYX3 DNA-directed RNA polymerase n=1 Tax=Sclerotinia sclerotiorum 1980
            UF-70 RepID=A7EYX3_SCLS1
          Length = 1459

 Score =  149 bits (375), Expect = 2e-34
 Identities = 70/170 (41%), Positives = 114/170 (67%)
 Frame = +1

Query: 67   FIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGV 246
            ++ +++ +S+  L+ F ++CL +Y   K+E G  +GA+GA SIGEPGTQMTLKTFHFAGV
Sbjct: 1053 YVNQVAKVSKTTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV 1112

Query: 247  ASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIK 426
            A MN+T GVPRI EIIN +  I TP +   L  D ++++AR+VK R+EKT L +V    +
Sbjct: 1113 AGMNLTAGVPRIKEIINASKTIATPFVKCPLLNDKDLDVARLVKARMEKTYLHEVLHFAE 1172

Query: 427  VVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
             + ++RSA + +++D + +    + +    +  +IL+  KLK+K +++ +
Sbjct: 1173 DMWSARSAVICLAVDTEYLVNRQIEVTVENIATTILKNKKLKVKSEDLNV 1222

[91][TOP]
>UniRef100_B4MT76 DNA-directed RNA polymerase n=1 Tax=Drosophila willistoni
            RepID=B4MT76_DROWI
          Length = 1381

 Score =  148 bits (374), Expect = 3e-34
 Identities = 82/167 (49%), Positives = 112/167 (67%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            +I  +S  QL  +L     RY     E GT +GAI A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 994  QIEAVSGEQLLEYLRRINERYNRAVSEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASM 1053

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+T GVPRI+EIIN    I TPIITA L  + ++  AR VK RIEKTTLG+++  ++VV 
Sbjct: 1054 NITQGVPRIVEIINATKTISTPIITAELRNNTSMEYARQVKARIEKTTLGELSSYVEVVC 1113

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
             + S  L I +D   I+   L+I+ +T+  SIL++ +L++K  ++++
Sbjct: 1114 RAFSCHLVIGIDMARIKVLGLHINLDTIVASILKS-RLRIKPNQVEV 1159

[92][TOP]
>UniRef100_A7AP17 DNA-directed RNA polymerase n=1 Tax=Babesia bovis RepID=A7AP17_BABBO
          Length = 1541

 Score =  148 bits (374), Expect = 3e-34
 Identities = 86/167 (51%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S RQ+  F+  C   Y+      G  IGA+GA SIGEPGTQMTLKTFHFAGVASMNVTL
Sbjct: 1174 LSVRQIFEFVRCCWKDYQRAICVPGEAIGALGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1233

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +S I+TPII   L  + +   A MVK RIEKTTLGQV   IK +     
Sbjct: 1234 GVPRIKEIINASSTIQTPIIEVPLINNKDFEYALMVKARIEKTTLGQVCSDIKEIFGPTG 1293

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTG---KLKLKEKEIKIL 579
            A L ++L+E +I++  L ID+  V+E IL      K KL +  I ++
Sbjct: 1294 AQLRVTLNENLIKKLLLQIDAFKVREIILDNSVMTKFKLGKHAISVV 1340

[93][TOP]
>UniRef100_C7YT68 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI
            77-13-4 RepID=C7YT68_NECH7
          Length = 1449

 Score =  148 bits (374), Expect = 3e-34
 Identities = 72/167 (43%), Positives = 108/167 (64%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            R + ++   L +F+ +CL +Y+   +E G  +GA+GAHSIGEPGTQMTLKTFHFAGVA M
Sbjct: 1042 RTAKVTLSTLRLFIKMCLDKYKKAHVEPGHAVGAVGAHSIGEPGTQMTLKTFHFAGVAGM 1101

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            ++T GVPRI EIIN +  I TP+IT  LE ++ I  AR+VKGRIEKT +  V + ++   
Sbjct: 1102 SITQGVPRIKEIINASKTISTPVITCPLENNEQIEAARVVKGRIEKTYISDVLRFVEDEW 1161

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
             +    + + +D   + + +L I    + E+I +  KLK++  ++ I
Sbjct: 1162 RTNEGNVVLQIDSTALSDMHLGIGPYDIAEAICKQRKLKVQRDDLSI 1208

[94][TOP]
>UniRef100_B3L8U1 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
            RepID=B3L8U1_PLAKH
          Length = 1970

 Score =  148 bits (373), Expect = 3e-34
 Identities = 80/165 (48%), Positives = 115/165 (69%), Gaps = 2/165 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEA-GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
            ++ +QL +F+   +S+Y FK I + G  +G+I A SIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1424 VNLKQLYLFIFFNVSKY-FKYISSPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNIT 1482

Query: 265  LGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSR 444
            LGVPRI EIIN +SNI+TPI+   L+  DN N A M+K ++EKTT+  +   IK   TSR
Sbjct: 1483 LGVPRIKEIINASSNIQTPILNIPLQVKDNYNFALMMKSKLEKTTIRDICLYIKEDYTSR 1542

Query: 445  SAALFISLDEKIIEEAYLNIDSNTVKESILQTGKL-KLKEKEIKI 576
               L +  +E++I   +LNI++ T+K+ I++   + K+K  +I +
Sbjct: 1543 GIFLSVKFNEQLIHNLFLNINAYTIKDIIMRQSHINKIKINKIVV 1587

[95][TOP]
>UniRef100_B0EG66 DNA-directed RNA polymerase n=1 Tax=Entamoeba dispar SAW760
            RepID=B0EG66_ENTDI
          Length = 1379

 Score =  148 bits (373), Expect = 3e-34
 Identities = 78/166 (46%), Positives = 108/166 (65%)
 Frame = +1

Query: 79   ISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            + GI+ + L+ F+ IC  +      EAGTP+GA+   S+GEP TQM LKTFHFAGVASMN
Sbjct: 1006 LCGITIQTLKEFISICQKKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFHFAGVASMN 1065

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            + LGVPRI EIIN +  I+TPI+TA L    ++  AR+VKGRIE T L ++AKSIK+V  
Sbjct: 1066 IALGVPRIKEIINASKKIQTPIVTAKLVNSQDLTSARIVKGRIEATRLKEIAKSIKIVFK 1125

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
               A + + LD + I++  L      V++ +L    LKLK+ ++ I
Sbjct: 1126 PAEAYISVKLDFETIKQLELECTIEKVQDVLLNYRGLKLKDNQVII 1171

[96][TOP]
>UniRef100_UPI000023CDC4 hypothetical protein FG09860.1 n=1 Tax=Gibberella zeae PH-1
            RepID=UPI000023CDC4
          Length = 2443

 Score =  147 bits (372), Expect = 4e-34
 Identities = 71/167 (42%), Positives = 109/167 (65%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            R + ++   L++F+ +CL +Y+   +E G  +GA+GAHSIGEPGTQMTLKTFHFAGVA M
Sbjct: 2035 RTAKVTLSTLQLFIKLCLEKYKKAHVEPGHAVGAVGAHSIGEPGTQMTLKTFHFAGVAGM 2094

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            ++T GVPRI EIIN +  I TP+IT  LE ++ I  AR+VKGRIEKT +  + + ++   
Sbjct: 2095 SITQGVPRIKEIINASKAISTPVITCPLENNEQIEAARVVKGRIEKTYISDILRFVEDEW 2154

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
             +    + + +D   + + +L I    + E+I +  KLK++  ++ I
Sbjct: 2155 RTTEGNVVLQIDPTALSDMHLGIGPYDIAEAICKQRKLKVQRDDLSI 2201

[97][TOP]
>UniRef100_Q8IE49 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
            RepID=Q8IE49_PLAF7
          Length = 2356

 Score =  147 bits (372), Expect = 4e-34
 Identities = 81/170 (47%), Positives = 117/170 (68%), Gaps = 4/170 (2%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEA-GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            S I+ +QL +F+   + +Y FK I   G  +G+I A SIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1765 SFINLKQLYLFIFFNIYKY-FKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMN 1823

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            VTLGVPRI EIIN +++I+TPI+   LE +DN N A M+K ++EKTT+  +   IK   T
Sbjct: 1824 VTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYT 1883

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQ---TGKLKLKEKEIKIL 579
            SR   L +  +E++I++ +LNI++  +K+ IL+     K+K+ +  I ++
Sbjct: 1884 SRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVI 1933

[98][TOP]
>UniRef100_C4M626 DNA-directed RNA polymerase n=1 Tax=Entamoeba histolytica HM-1:IMSS
            RepID=C4M626_ENTHI
          Length = 1379

 Score =  147 bits (372), Expect = 4e-34
 Identities = 79/174 (45%), Positives = 110/174 (63%)
 Frame = +1

Query: 55   NLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFH 234
            N  N    + GI+ + L+ F+ IC  +      EAGTP+GA+   S+GEP TQM LKTFH
Sbjct: 998  NQENAQHGLCGITIQTLKDFISICHEKGLRSVCEAGTPVGALAGQSMGEPSTQMVLKTFH 1057

Query: 235  FAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVA 414
            FAGVASMN+ LGVPRI EIIN +  I+TPI+TA L    ++  AR+VKGRIE T L ++A
Sbjct: 1058 FAGVASMNIALGVPRIKEIINASKKIQTPIVTAKLVNSQDVTSARIVKGRIEATRLKEIA 1117

Query: 415  KSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            KS+K+V     A + + LD + I++  L      V++ +L    LKLK+ ++ I
Sbjct: 1118 KSVKIVFKPAEAYISVKLDFETIKQLELECTIEKVQDVLLNYRGLKLKDNQVII 1171

[99][TOP]
>UniRef100_C5MI79 DNA-directed RNA polymerase (Fragment) n=1 Tax=Candida tropicalis
            MYA-3404 RepID=C5MI79_CANTT
          Length = 1159

 Score =  147 bits (372), Expect = 4e-34
 Identities = 81/153 (52%), Positives = 104/153 (67%)
 Frame = +1

Query: 31   EDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGT 210
            ++DP  + ++N  +     IS++ +E FL+ CL +Y   K+E GT +GAIGA SIGEPGT
Sbjct: 1011 DEDPAVVNSVNQILK----ISQKTIEKFLEQCLYKYSRAKVEPGTAVGAIGAQSIGEPGT 1066

Query: 211  QMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIE 390
            QMTLKTFHFAGVASMNVTLGVPRI EIIN +  I TPII ++L  D++   AR+ KGRIE
Sbjct: 1067 QMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINSVLVNDEDEIAARVAKGRIE 1126

Query: 391  KTTLGQVAKSIKVVATSRSAALFISLDEKIIEE 489
            KT L  VA  I+ V       L I +D + I+E
Sbjct: 1127 KTLLEDVAFYIEDVYKDNLCYLSIKIDLETIDE 1159

[100][TOP]
>UniRef100_P27625 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Plasmodium
            falciparum RepID=RPC1_PLAFA
          Length = 2339

 Score =  147 bits (372), Expect = 4e-34
 Identities = 81/170 (47%), Positives = 117/170 (68%), Gaps = 4/170 (2%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEA-GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            S I+ +QL +F+   + +Y FK I   G  +G+I A SIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1754 SFINLKQLYLFIFFNIYKY-FKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMN 1812

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            VTLGVPRI EIIN +++I+TPI+   LE +DN N A M+K ++EKTT+  +   IK   T
Sbjct: 1813 VTLGVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYT 1872

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQ---TGKLKLKEKEIKIL 579
            SR   L +  +E++I++ +LNI++  +K+ IL+     K+K+ +  I ++
Sbjct: 1873 SRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVI 1922

[101][TOP]
>UniRef100_UPI00016E6B7A UPI00016E6B7A related cluster n=1 Tax=Takifugu rubripes
            RepID=UPI00016E6B7A
          Length = 1320

 Score =  147 bits (371), Expect = 6e-34
 Identities = 86/186 (46%), Positives = 117/186 (62%), Gaps = 5/186 (2%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            +PK L  L+   P        QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQM
Sbjct: 952  EPKVLYQLDRITPT-------QLERFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1004

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVASMN+TLGVPRI EIIN + NI TPIITA L+ +D+ + AR+VKGRIEKT
Sbjct: 1005 TLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKT 1064

Query: 397  TLGQVAKSIKVVATSRSAALFISLD-EKI----IEEAYLNIDSNTVKESILQTGKLKLKE 561
             LG++++ I+ V       + + L  E+I    +EEA + +      +S +      LKE
Sbjct: 1065 LLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEEAVVCVSPRENSKSSMYYVLQSLKE 1124

Query: 562  KEIKIL 579
               K++
Sbjct: 1125 DLPKVV 1130

[102][TOP]
>UniRef100_Q4S3H6 DNA-directed RNA polymerase (Fragment) n=1 Tax=Tetraodon nigroviridis
            RepID=Q4S3H6_TETNG
          Length = 1319

 Score =  145 bits (367), Expect = 2e-33
 Identities = 84/185 (45%), Positives = 115/185 (62%), Gaps = 4/185 (2%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            +PK L  L+   P        QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQM
Sbjct: 952  EPKVLYQLDRITPT-------QLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQM 1004

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVASMN+TLGVPRI EIIN + NI TPIITA L+ +D+ + AR+VKGRIEKT
Sbjct: 1005 TLKTFHFAGVASMNITLGVPRIKEIINASKNISTPIITAHLDVEDDADFARLVKGRIEKT 1064

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIE----EAYLNIDSNTVKESILQTGKLKLKEK 564
             LG++++ I+ V       + + L  + I     EA + +      +S +      LKE+
Sbjct: 1065 LLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEAVVCVSPRENSKSSMYYVLQSLKEE 1124

Query: 565  EIKIL 579
              K++
Sbjct: 1125 LPKVV 1129

[103][TOP]
>UniRef100_B0WFY1 DNA-directed RNA polymerase n=1 Tax=Culex quinquefasciatus
            RepID=B0WFY1_CULQU
          Length = 1303

 Score =  145 bits (367), Expect = 2e-33
 Identities = 81/159 (50%), Positives = 105/159 (66%)
 Frame = +1

Query: 100  QLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 279
            QL+ FL     +Y     E GT +GA+ A SIGEPGTQMTLKTFHFAGVASMN+T GVPR
Sbjct: 930  QLKKFLMQVRDKYNKAITEPGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 989

Query: 280  IMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALF 459
            I+EIIN    I TPIITA +  + ++  AR VK RIEKTTLG+++  I+ V  S    L 
Sbjct: 990  IVEIINATKAISTPIITAEIADNTSMEFARKVKARIEKTTLGEISSYIEEVYKSDDCFLL 1049

Query: 460  ISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            I LD   I    L +++ T++ SI  T KLKLK++ +++
Sbjct: 1050 IKLDLDRIRVLGLEVNAETIRYSIC-TSKLKLKQENVEV 1087

[104][TOP]
>UniRef100_B5DTL9 GA22253 (Fragment) n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=B5DTL9_DROPS
          Length = 419

 Score =  144 bits (364), Expect = 4e-33
 Identities = 83/175 (47%), Positives = 112/175 (64%)
 Frame = +1

Query: 52  KNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTF 231
           +   N   +I  I+  QL  F+     RY     E GT +GAI A SIGEPGTQMTLKTF
Sbjct: 24  REYGNLCHQIECITAEQLLEFVRRINDRYNRAVSEPGTAVGAIAAQSIGEPGTQMTLKTF 83

Query: 232 HFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQV 411
           HFAGVASMN+T GVPRI+EIIN    I TPIITA L+ + ++  AR VK RIEKTTLG++
Sbjct: 84  HFAGVASMNITQGVPRIVEIINATKTISTPIITAELQENSSMEYARHVKSRIEKTTLGEL 143

Query: 412 AKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
           +  I+VV    S  L + +D   I+   L+I+  T+   IL++ +++LK  +++I
Sbjct: 144 SSFIEVVCGPYSCHLAMGIDMSRIKVLGLHINLETIVACILKS-RMRLKPAQVEI 197

[105][TOP]
>UniRef100_B4IKC6 DNA-directed RNA polymerase n=1 Tax=Drosophila sechellia
            RepID=B4IKC6_DROSE
          Length = 1369

 Score =  144 bits (364), Expect = 4e-33
 Identities = 83/179 (46%), Positives = 114/179 (63%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            K  +   N   +I  ++  QL  F+     RY     E GT +GAI A SIGEPGTQMTL
Sbjct: 969  KRYEKCINLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTL 1028

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMN+T GVPRI+EIIN    I TPIITA LE   ++  AR VK RIEKTTL
Sbjct: 1029 KTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTL 1088

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
             +++  ++VV    S  L I +D   I+   L+ID +T+  SIL++ ++++K  +++++
Sbjct: 1089 AELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVV 1146

[106][TOP]
>UniRef100_Q2GTS6 DNA-directed RNA polymerase n=1 Tax=Chaetomium globosum
            RepID=Q2GTS6_CHAGB
          Length = 1290

 Score =  144 bits (363), Expect = 5e-33
 Identities = 72/163 (44%), Positives = 105/163 (64%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            + R++ +S R L  F+ +CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA
Sbjct: 981  VNRVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVA 1040

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
             M++T GVPRI EIIN +  I TP+I+  LE   +I  AR+VKGRIEKT +  +   +  
Sbjct: 1041 GMSITQGVPRIKEIINASKTISTPVISCELENRVDIKAARVVKGRIEKTYVSDIISFVDD 1100

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
                  A + + +D + + +  L I    + ++I++  KLKLK
Sbjct: 1101 EWLPDVAKIVLQVDLQALSDMQLGISMKDIADAIVRAKKLKLK 1143

[107][TOP]
>UniRef100_B4PX62 DNA-directed RNA polymerase n=1 Tax=Drosophila yakuba
            RepID=B4PX62_DROYA
          Length = 1383

 Score =  143 bits (361), Expect = 8e-33
 Identities = 83/177 (46%), Positives = 112/177 (63%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            K  +   N   +I  ++  QL  F+     RY     E GT +GAI A SIGEPGTQMTL
Sbjct: 983  KRYEKYINLCHQIECLTAEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTL 1042

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMN+T GVPRI+EIIN    I TPIITA LE   ++  AR VK RIEKTTL
Sbjct: 1043 KTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTL 1102

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIK 573
             +++  ++VV    S  L I +D   I+   L+ID +T+  SIL++ ++++K  +++
Sbjct: 1103 AELSSYVEVVCGPYSCYLAIGIDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVE 1158

[108][TOP]
>UniRef100_B3NXK5 DNA-directed RNA polymerase n=1 Tax=Drosophila erecta
            RepID=B3NXK5_DROER
          Length = 1383

 Score =  143 bits (361), Expect = 8e-33
 Identities = 83/177 (46%), Positives = 112/177 (63%)
 Frame = +1

Query: 43   KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
            K  +   N   +I  ++  QL  F+     RY     E GT +GAI A SIGEPGTQMTL
Sbjct: 983  KRYEKYINLCHQIECLTAEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTL 1042

Query: 223  KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
            KTFHFAGVASMN+T GVPRI+EIIN    I TPIITA LE   ++  AR VK RIEKTTL
Sbjct: 1043 KTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTL 1102

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIK 573
             +++  ++VV    S  L I +D   I+   L+ID +T+  SIL++ ++++K  +++
Sbjct: 1103 AELSSYVEVVCGPYSCYLAIGIDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVE 1158

[109][TOP]
>UniRef100_Q7RXJ6 DNA-directed RNA polymerase n=1 Tax=Neurospora crassa
            RepID=Q7RXJ6_NEUCR
          Length = 1474

 Score =  143 bits (361), Expect = 8e-33
 Identities = 74/174 (42%), Positives = 110/174 (63%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            DP+  +     + R++ +S   L  F+++CLS++   K+E G  +GA+GA SIGEPGTQM
Sbjct: 1007 DPEEEEIQQAHVDRVAKVSEATLRKFMNLCLSKFDKAKVEPGHAVGAVGAQSIGEPGTQM 1066

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVA M++T GVPRI EII  +  I TP+I+  LE + +I  AR+VKG+IEKT
Sbjct: 1067 TLKTFHFAGVAGMSITQGVPRIKEIIGASKLISTPVISCELENNRDIKAARIVKGKIEKT 1126

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
             +  V   ++ V     A + + +D + + +  L I    +  +I++  KLKLK
Sbjct: 1127 YISDVITYVEDVWLPDVAKIVLKIDMQALSDMQLGIGLREIMVAIVKAKKLKLK 1180

[110][TOP]
>UniRef100_A2QU24 DNA-directed RNA polymerase n=1 Tax=Aspergillus niger CBS 513.88
            RepID=A2QU24_ASPNC
          Length = 1450

 Score =  143 bits (361), Expect = 8e-33
 Identities = 75/183 (40%), Positives = 110/183 (60%)
 Frame = +1

Query: 25   ITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEP 204
            I  +D +  K LN+       ++ R L  F+  CL +Y+  ++EAG  +GA+GA SIGEP
Sbjct: 1026 IDPNDERSQKGLNH----TGKLTERTLRTFISSCLMKYKKAQVEAGHAVGAVGAQSIGEP 1081

Query: 205  GTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGR 384
            GTQMTLKTFHFAGVA M++T GVPRI EIIN +  I TP++   L T DNI  AR+VKGR
Sbjct: 1082 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVTKDNIIAARIVKGR 1141

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            IEKT L  +   ++   T + A + + ++ K I++  L +    +  +I    + K  + 
Sbjct: 1142 IEKTYLRDIIHYVRETWTGKEAYITVKINWKTIQDLALELKIENILSAIKNHKRFKADDL 1201

Query: 565  EIK 573
            + +
Sbjct: 1202 KFR 1204

[111][TOP]
>UniRef100_B4R5H7 DNA-directed RNA polymerase n=1 Tax=Drosophila simulans
           RepID=B4R5H7_DROSI
          Length = 723

 Score =  143 bits (360), Expect = 1e-32
 Identities = 83/177 (46%), Positives = 112/177 (63%)
 Frame = +1

Query: 43  KHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTL 222
           K  +   N   +I  ++  QL  F+     RY     E GT +GAI A SIGEPGTQMTL
Sbjct: 323 KRYEKCINLCHQIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTL 382

Query: 223 KTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTL 402
           KTFHFAGVASMN+T GVPRI+EIIN    I TPIITA LE   ++  AR VK RIEKTTL
Sbjct: 383 KTFHFAGVASMNITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTL 442

Query: 403 GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIK 573
            +++  ++VV    S  L I +D   I+   L+ID +T+  SIL++ ++++K  +++
Sbjct: 443 AELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVE 498

[112][TOP]
>UniRef100_A9UN86 DNA-directed RNA polymerase (Fragment) n=1 Tax=Drosophila
            melanogaster RepID=A9UN86_DROME
          Length = 1410

 Score =  143 bits (360), Expect = 1e-32
 Identities = 81/168 (48%), Positives = 111/168 (66%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            +I  ++  QL  F+     RY     E GT +GAI A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1021 QIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASM 1080

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+T GVPRI+EIIN    I TPIITA LE   ++  AR VK RIEKTTL +++  ++VV 
Sbjct: 1081 NITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVC 1140

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
               S  L I +D   I+   L+ID +T+  SIL++ ++++K  +++++
Sbjct: 1141 GPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVV 1187

[113][TOP]
>UniRef100_A8JUY3 DNA-directed RNA polymerase n=1 Tax=Drosophila melanogaster
            RepID=A8JUY3_DROME
          Length = 1376

 Score =  143 bits (360), Expect = 1e-32
 Identities = 81/168 (48%), Positives = 111/168 (66%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            +I  ++  QL  F+     RY     E GT +GAI A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 987  QIECLTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASM 1046

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+T GVPRI+EIIN    I TPIITA LE   ++  AR VK RIEKTTL +++  ++VV 
Sbjct: 1047 NITQGVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVC 1106

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
               S  L I +D   I+   L+ID +T+  SIL++ ++++K  +++++
Sbjct: 1107 GPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKS-RMRVKPTQVEVV 1153

[114][TOP]
>UniRef100_B8MLB5 DNA-directed RNA polymerase n=1 Tax=Talaromyces stipitatus ATCC 10500
            RepID=B8MLB5_TALSN
          Length = 1441

 Score =  143 bits (360), Expect = 1e-32
 Identities = 74/170 (43%), Positives = 103/170 (60%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            +  +  +S R L  F+  CLS+Y   KIE G  +GA+GA SIGEPGTQMTLKTFHFAGV 
Sbjct: 1036 LDHVGKLSERSLRYFIKSCLSKYEKAKIEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVG 1095

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            ++ +T GVPRI EIIN +  I TP+IT  L   D ++ AR+ KGRIEKT L  +   I+ 
Sbjct: 1096 NLALTQGVPRIKEIINASKEISTPVITCHLAVPDKVHAARIAKGRIEKTFLRDIIHYIRE 1155

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              + +   + + L+   IE   L +    +KE+I+   + K K+  I +L
Sbjct: 1156 SWSDKEGYITVKLNWDTIENLQLELSLPQIKEAIINHRRFKGKDLSIDVL 1205

[115][TOP]
>UniRef100_Q7RQQ6 DNA-directed RNA polymerase n=1 Tax=Plasmodium yoelii yoelii
            RepID=Q7RQQ6_PLAYO
          Length = 2020

 Score =  142 bits (359), Expect = 1e-32
 Identities = 82/167 (49%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEA-GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            S I+ +QL +F+   +S+Y FK I + G  +G+I A SIGEPGTQMTLKTFHFAGVASMN
Sbjct: 1450 SFINLKQLYIFIYFNISKY-FKYISSPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMN 1508

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            VTLGVPRI EIIN +S I+TPI+   L   DN N A M+K ++EKT++  + + IK    
Sbjct: 1509 VTLGVPRIKEIINASSIIQTPILNIPLRIKDNYNFALMMKSKLEKTSIRDICEYIKENYC 1568

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESIL-QTGKLKLKEKEIKI 576
            S+   + I  +E +I++ +LNI++ T+++ IL QT   K+K  +I I
Sbjct: 1569 SKGIYISIKFNEDLIQKLFLNINAYTIRDIILKQTHISKIKINKIYI 1615

[116][TOP]
>UniRef100_B7PVV6 DNA-directed RNA polymerase n=1 Tax=Ixodes scapularis
            RepID=B7PVV6_IXOSC
          Length = 1394

 Score =  142 bits (359), Expect = 1e-32
 Identities = 79/168 (47%), Positives = 107/168 (63%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  ++  QL  F   C  +Y    +E  T +GA+ A SIGEP TQMTLKTFHFAGVASM
Sbjct: 1002 QLDRLTASQLRSFFATCREKYFRAVMEPATAVGAVCAQSIGEPATQMTLKTFHFAGVASM 1061

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+T GVPRI EIIN + NI TPIITA L  + +   AR VKGRIEKTTLG+V++ ++ V 
Sbjct: 1062 NITQGVPRIKEIINASKNISTPIITAALAVNQDAEYARRVKGRIEKTTLGEVSEYLEEVF 1121

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
                  + I LD   I    L ++++TV  SI  T KL++K + + ++
Sbjct: 1122 LPDECFVLIKLDLDRIRLLQLEVNADTVCYSI-ATSKLRIKGQNLSVV 1168

[117][TOP]
>UniRef100_A5K7T9 DNA-directed RNA polymerase n=1 Tax=Plasmodium vivax
            RepID=A5K7T9_PLAVI
          Length = 1946

 Score =  142 bits (359), Expect = 1e-32
 Identities = 78/165 (47%), Positives = 114/165 (69%), Gaps = 2/165 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEA-GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
            ++ +QL +F+   +S+Y FK I A G  +G+I A SIGEPGTQMTLKTFHFAGVASMNVT
Sbjct: 1427 VNLKQLYLFIFFNVSKY-FKYISAPGDAVGSISAQSIGEPGTQMTLKTFHFAGVASMNVT 1485

Query: 265  LGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSR 444
            LGVPRI EIIN +S I+TPI+   L+  D+ N A M+K ++EKTT+  +   IK   T+R
Sbjct: 1486 LGVPRIKEIINASSTIQTPILNIPLQVKDSYNFALMMKSKLEKTTVRDICLYIKEDYTAR 1545

Query: 445  SAALFISLDEKIIEEAYLNIDSNTVKESILQTGKL-KLKEKEIKI 576
               L +  +E++I   +LNI++ T+++ I++   + K+K  +I +
Sbjct: 1546 GIFLSVKFNEQLIHNLFLNINAYTIRDIIMRQSHISKIKINKILV 1590

[118][TOP]
>UniRef100_A6SCV1 DNA-directed RNA polymerase n=1 Tax=Botryotinia fuckeliana B05.10
            RepID=A6SCV1_BOTFB
          Length = 1468

 Score =  142 bits (359), Expect = 1e-32
 Identities = 67/171 (39%), Positives = 111/171 (64%)
 Frame = +1

Query: 64   NFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAG 243
            +++ +++ +S   L+ F ++CL +Y   K+E G  +GA+GA SIGEPGTQMTLKTFHFAG
Sbjct: 1049 DYVNQVAKVSETTLKKFCELCLEKYSRAKVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAG 1108

Query: 244  VASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSI 423
            VA MN+T GVPRI EIIN +  I TP +   L     + +AR+VK R+EKT L +V    
Sbjct: 1109 VAGMNLTAGVPRIKEIINASKTIATPFVKCPLLNSKELEVARLVKARMEKTYLHEVLHFA 1168

Query: 424  KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            + + +++SA + +++D + +    + +    +  +IL+  KLK++ +++ +
Sbjct: 1169 EDMWSAKSAIICLAVDTEYLVNRQIEVTVENIAHTILKNKKLKVRSEDLHV 1219

[119][TOP]
>UniRef100_Q0CS43 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0CS43_ASPTN
          Length = 1450

 Score =  142 bits (357), Expect = 2e-32
 Identities = 74/183 (40%), Positives = 110/183 (60%)
 Frame = +1

Query: 25   ITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEP 204
            I  +D +  K LN+       ++   L  F++ CL +Y+  ++E G  +GA+GA SIGEP
Sbjct: 1026 IDPNDERSQKGLNH----TGKLTETTLRTFINACLMKYKKAQVEPGHAVGAVGAQSIGEP 1081

Query: 205  GTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGR 384
            GTQMTLKTFHFAGVA M++T GVPRI EIIN +  I TP++   L T DNI  AR+VKGR
Sbjct: 1082 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVVACELVTKDNIIAARIVKGR 1141

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            IEKT L  +   ++   T + A + + ++ K I++  L +  N +  +I    + K  + 
Sbjct: 1142 IEKTYLRDIIHYVRETWTGKEAFITVKINWKTIQDLALELKINNILAAIKNHKRFKADDL 1201

Query: 565  EIK 573
            + +
Sbjct: 1202 KFR 1204

[120][TOP]
>UniRef100_B6K857 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6K857_SCHJY
          Length = 1406

 Score =  142 bits (357), Expect = 2e-32
 Identities = 81/194 (41%), Positives = 115/194 (59%), Gaps = 8/194 (4%)
 Frame = +1

Query: 19   ETITEDDPKHLKNLNNFIP--------RISGISRRQLEVFLDICLSRYRFKKIEAGTPIG 174
            E  +EDD    +N ++F P         +  +S++QL  FL  C  +Y   K+E GT +G
Sbjct: 990  ERPSEDDFDDFEN-DDFAPLAARKSVDNVLRVSKKQLYTFLQFCWEKYMKAKVEPGTAVG 1048

Query: 175  AIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDN 354
            A+GAHSIGEPGTQMTLKTFHFAGVA+   TLGVPRI EIIN A  I TPII   L  D +
Sbjct: 1049 AVGAHSIGEPGTQMTLKTFHFAGVAA-QTTLGVPRIKEIINAAKTISTPIIYGALVNDQD 1107

Query: 355  INIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESIL 534
            +  AR+VKGRIEKT L  V  S++ +    +  + + ++   I +  L++    +  +I 
Sbjct: 1108 VRSARVVKGRIEKTYLKDVISSLEEIFGPTNTYISVHVNFDTIRKLQLDLTLADIASAIW 1167

Query: 535  QTGKLKLKEKEIKI 576
               KLK+  +++ +
Sbjct: 1168 TAPKLKIPMQQVTV 1181

[121][TOP]
>UniRef100_UPI00018665E5 hypothetical protein BRAFLDRAFT_127993 n=1 Tax=Branchiostoma floridae
            RepID=UPI00018665E5
          Length = 1391

 Score =  141 bits (356), Expect = 3e-32
 Identities = 85/179 (47%), Positives = 110/179 (61%), Gaps = 12/179 (6%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  QL+ FL +   +Y   KIE GT +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1003 QLERITPTQLKQFLIMVRDKYLRAKIEPGTAVGAVCAQSIGEPGTQMTLKTFHFAGVASM 1062

Query: 256  NV------------TLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTT 399
            N+            TLGVPRI EIIN + NI TPIITA LE D +   AR VKGRIEK+ 
Sbjct: 1063 NILLTYLLNHVAHITLGVPRIKEIINASKNISTPIITAQLEDDTSAEFARRVKGRIEKSL 1122

Query: 400  LGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            LG+V + ++ V       L I L    I+   L + ++T++ SI  T KL++K   I +
Sbjct: 1123 LGEVTEYMEEVYLPDDCFLLIKLHMDRIKLLKLEVSADTIRYSIC-TSKLRIKPANIVV 1180

[122][TOP]
>UniRef100_Q4N1T2 DNA-directed RNA polymerase n=1 Tax=Theileria parva
            RepID=Q4N1T2_THEPA
          Length = 1617

 Score =  141 bits (356), Expect = 3e-32
 Identities = 75/157 (47%), Positives = 105/157 (66%)
 Frame = +1

Query: 79   ISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            ++ IS  Q+  F+      Y+    E G  IGA+G+ SIGEP TQMTLKTFHFAGVASMN
Sbjct: 1252 VNRISLEQMFEFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMN 1311

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            VTLGVPRI EIIN  S I TPII   LE + + + A  VK +IEKTTLGQ+  +IK + T
Sbjct: 1312 VTLGVPRIQEIINATSLIATPIIEVPLEDNTDYDFALKVKSKIEKTTLGQICLNIKQLYT 1371

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKL 549
             + + L  +L+  +IE+ ++ ++++ V++ I+ +G L
Sbjct: 1372 PQMSKLLFTLNRDLIEQLHIQVNADKVRDIIIDSGCL 1408

[123][TOP]
>UniRef100_A4QVL1 DNA-directed RNA polymerase n=1 Tax=Magnaporthe grisea
            RepID=A4QVL1_MAGGR
          Length = 970

 Score =  141 bits (356), Expect = 3e-32
 Identities = 76/183 (41%), Positives = 113/183 (61%)
 Frame = +1

Query: 28   TEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPG 207
            T DD K        + R++ IS   L  FL +C  ++   K E G  +GA+GA SIGEPG
Sbjct: 552  TADDSKADMQRVAQVNRVAKISHTTLIKFLKLCQEKHERAKTEPGHAVGAVGAQSIGEPG 611

Query: 208  TQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRI 387
            TQMTLKTFHFAGVA M++T GVPRI EIIN +  I TP+IT  L+ +  I  AR+VKGRI
Sbjct: 612  TQMTLKTFHFAGVAGMSITQGVPRIKEIINASKLISTPVITCPLQNNKQIEAARVVKGRI 671

Query: 388  EKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKE 567
            EKT +  V + I+    + + ++ + +D   +++ +L I    + E+I +  KLK++  +
Sbjct: 672  EKTYVSDVLRFIEDEWKADTGSVVLQIDMGALQDMHLGIGLPEIAEAICKYKKLKIEPDD 731

Query: 568  IKI 576
            +++
Sbjct: 732  LRL 734

[124][TOP]
>UniRef100_A8PJK8 DNA-directed RNA polymerase n=1 Tax=Brugia malayi RepID=A8PJK8_BRUMA
          Length = 1404

 Score =  140 bits (354), Expect = 5e-32
 Identities = 80/177 (45%), Positives = 107/177 (60%)
 Frame = +1

Query: 34   DDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQ 213
            +D K+ K       R   +SR Q   F+ +CL ++R    E GT +GA+ A SIGEP TQ
Sbjct: 1003 NDCKNQKFFRETEIRSHCLSRAQAVAFIKLCLRKFRRAICEPGTAVGAVAATSIGEPSTQ 1062

Query: 214  MTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEK 393
            MTLKTFHFAGVASMN+T GVPRI EIING   I TP+ITA L  + +  +AR VK RIEK
Sbjct: 1063 MTLKTFHFAGVASMNITQGVPRIKEIINGVKLISTPLITAALTNEKDEKLARRVKARIEK 1122

Query: 394  TTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            TTLG++   I+ V       + + ++ K +    L I  +++ +SI  T KL +  K
Sbjct: 1123 TTLGEICDYIEEVYLPDDCFILLKINAKRVRLLQLEITMSSIAQSIC-TSKLPVPVK 1178

[125][TOP]
>UniRef100_B0XZZ0 DNA-directed RNA polymerase n=2 Tax=Aspergillus fumigatus
            RepID=B0XZZ0_ASPFC
          Length = 1453

 Score =  139 bits (350), Expect = 2e-31
 Identities = 73/183 (39%), Positives = 109/183 (59%)
 Frame = +1

Query: 25   ITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEP 204
            I   D +  K LN+       ++ + L  F+  CL +Y+  ++E G  +GA+GA SIGEP
Sbjct: 1026 IDPSDERSQKGLNH----TGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEP 1081

Query: 205  GTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGR 384
            GTQMTLKTFHFAGVA M++T GVPRI EIIN +  I TP+I+  L T DN+  AR+VKGR
Sbjct: 1082 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCDLVTKDNVIAARIVKGR 1141

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            IEKT L  +   ++   T + A L + ++ + I+   L +    + ++I    + K  + 
Sbjct: 1142 IEKTYLRDIIHYVREAWTGKEAYLTVKINWETIQNLALELKIRNIVDAIKNHKRFKADDL 1201

Query: 565  EIK 573
            + +
Sbjct: 1202 KFR 1204

[126][TOP]
>UniRef100_A1D5Y9 DNA-directed RNA polymerase n=1 Tax=Neosartorya fischeri NRRL 181
            RepID=A1D5Y9_NEOFI
          Length = 1453

 Score =  139 bits (350), Expect = 2e-31
 Identities = 73/183 (39%), Positives = 109/183 (59%)
 Frame = +1

Query: 25   ITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEP 204
            I   D +  K LN+       ++ + L  F+  CL +Y+  ++E G  +GA+GA SIGEP
Sbjct: 1026 IDPSDERSQKGLNH----TGKLTEKTLRTFITSCLMKYKKAQVEPGHAVGAVGAQSIGEP 1081

Query: 205  GTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGR 384
            GTQMTLKTFHFAGVA M++T GVPRI EIIN +  I TP+I+  L T DN+  AR+VKGR
Sbjct: 1082 GTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCDLVTKDNVIAARIVKGR 1141

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            IEKT L  +   ++   T + A L + ++ + I+   L +    + ++I    + K  + 
Sbjct: 1142 IEKTYLRDIIHYVREAWTGKEAYLTVKINWETIQNLALELKIRNIVDAIKNHKRFKADDL 1201

Query: 565  EIK 573
            + +
Sbjct: 1202 KFR 1204

[127][TOP]
>UniRef100_O94666 DNA-directed RNA polymerase III subunit rpc1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPC1_SCHPO
          Length = 1405

 Score =  139 bits (350), Expect = 2e-31
 Identities = 80/169 (47%), Positives = 104/169 (61%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            +  I  ++ +QL  F+D C  +Y   K+E GT +GAIGA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1014 VENIIRVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1073

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            +   TLGVPRI EIIN A  I TPIIT  L  D +   AR+VKGRIEKT L  V   I+ 
Sbjct: 1074 A-QTTLGVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEE 1132

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
            V    +  L I ++   I +  L+I    +  +I  T KLK+  +++ +
Sbjct: 1133 VYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTV 1181

[128][TOP]
>UniRef100_Q4U940 DNA-directed RNA polymerase n=1 Tax=Theileria annulata
            RepID=Q4U940_THEAN
          Length = 1648

 Score =  138 bits (348), Expect = 3e-31
 Identities = 75/145 (51%), Positives = 96/145 (66%)
 Frame = +1

Query: 79   ISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            ++ IS  Q+  F+      Y+    E G  IGA+G+ SIGEP TQMTLKTFHFAGVASMN
Sbjct: 1269 VNRISLEQMFEFIRYSWKDYQKSLCEPGEAIGALGSQSIGEPATQMTLKTFHFAGVASMN 1328

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            VTLGVPRI EIIN  S I TPII   LE   +   A  VK +IEKTTLGQ+  +IK + T
Sbjct: 1329 VTLGVPRIQEIINATSLIATPIIEVPLEDKTSYEFALKVKSKIEKTTLGQICLNIKQLYT 1388

Query: 439  SRSAALFISLDEKIIEEAYLNIDSN 513
             +++ L  +L+  +IE+ +L I+SN
Sbjct: 1389 PQNSKLLFTLNRNLIEQLHLEINSN 1413

[129][TOP]
>UniRef100_B2ADZ3 DNA-directed RNA polymerase n=1 Tax=Podospora anserina
            RepID=B2ADZ3_PODAN
          Length = 1521

 Score =  138 bits (348), Expect = 3e-31
 Identities = 70/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S   L  F+++CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1093 VSEASLRKFIELCLEKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1152

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT +LE   +++ AR VK RIEKT +  +   +  V     
Sbjct: 1153 GVPRIKEIINASKTISTPVITCVLENTKDVSAARAVKHRIEKTYIKDILDYVDDVWLQDV 1212

Query: 448  AALFISLDEKIIEE-AYLNIDSNTVKESILQTGKLKLK 558
            A + + L++  +E    + I +  + ++I++  KLKLK
Sbjct: 1213 AKIVLRLEKDGLENLEQIGITTTDIADAIVKAKKLKLK 1250

[130][TOP]
>UniRef100_Q2U3T5 DNA-directed RNA polymerase n=1 Tax=Aspergillus oryzae
            RepID=Q2U3T5_ASPOR
          Length = 1447

 Score =  138 bits (347), Expect = 4e-31
 Identities = 67/155 (43%), Positives = 99/155 (63%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++ + L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1043 LTEKTLRTFISACLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1102

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+++  L T DN+  AR+VKGRIEKT L  +   ++   T + 
Sbjct: 1103 GVPRIKEIINASKEISTPVVSCELVTKDNVIAARIVKGRIEKTYLRDITHYVRETWTGKE 1162

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + + ++ K I++  L +    +  +I    + K
Sbjct: 1163 AYITVKINWKTIQDLALELKIQDILAAIKNHRRFK 1197

[131][TOP]
>UniRef100_B8NTG3 DNA-directed RNA polymerase n=1 Tax=Aspergillus flavus NRRL3357
            RepID=B8NTG3_ASPFN
          Length = 1436

 Score =  138 bits (347), Expect = 4e-31
 Identities = 67/155 (43%), Positives = 99/155 (63%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++ + L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1043 LTEKTLRTFISACLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1102

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+++  L T DN+  AR+VKGRIEKT L  +   ++   T + 
Sbjct: 1103 GVPRIKEIINASKEISTPVVSCELVTKDNVIAARIVKGRIEKTYLRDITHYVRETWTGKE 1162

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + + ++ K I++  L +    +  +I    + K
Sbjct: 1163 AYITVKINWKTIQDLALELKIQDILAAIKNHRRFK 1197

[132][TOP]
>UniRef100_Q0V3B7 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
            RepID=Q0V3B7_PHANO
          Length = 1473

 Score =  136 bits (343), Expect = 1e-30
 Identities = 70/166 (42%), Positives = 106/166 (63%)
 Frame = +1

Query: 79   ISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            I+ IS+  L+ F+D+CL++Y   +++ G  +GAIGA SIGEPGTQMTLKTFHFAGVA M+
Sbjct: 1073 IAKISQTALDTFIDLCLTKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMS 1132

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            +T GVPRI EIIN +S I TP+IT +L    + + AR+VK R+EKT L  +   ++ V  
Sbjct: 1133 ITQGVPRIKEIINASSTISTPVITCVLSNKISESAARIVKARVEKTYLRDIINYVEDVWH 1192

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
               A + + +D   +   +++I  + +  +I +   LK  +   K+
Sbjct: 1193 PTGAYVAMRIDWDTVNALFVDITPHEIVNAINKHKPLKWGKAGTKV 1238

[133][TOP]
>UniRef100_C9SQ00 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Verticillium
            albo-atrum VaMs.102 RepID=C9SQ00_9PEZI
          Length = 1456

 Score =  136 bits (343), Expect = 1e-30
 Identities = 69/170 (40%), Positives = 106/170 (62%)
 Frame = +1

Query: 67   FIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGV 246
            +  R++ +S   L++F+ +CL +Y+   +E G  +GA+GA SIGEPGTQMTLKTFHFAGV
Sbjct: 1048 YADRVAKVSENTLKLFIKLCLEKYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGV 1107

Query: 247  ASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIK 426
            A M++T GVPRI EIIN +  I TP+I   L  +  +  AR+VK RIEKT +  +   I+
Sbjct: 1108 AGMSITQGVPRIKEIINASKLISTPVIKCPLVQNKEMRAARIVKARIEKTYVSDILSYIE 1167

Query: 427  VVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                + +  + + +D   + +  L I  + V E+I +  KLK++  ++ I
Sbjct: 1168 DEWMANAGNVVLQIDMDALSDMQLGIGIHDVAEAICRHRKLKVQRGDLHI 1217

[134][TOP]
>UniRef100_B2VYJ3 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2VYJ3_PYRTR
          Length = 1471

 Score =  136 bits (343), Expect = 1e-30
 Identities = 72/158 (45%), Positives = 102/158 (64%)
 Frame = +1

Query: 79   ISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMN 258
            I+ ISR  L+ F+ +C S+Y   +++ G  +GAIGA SIGEPGTQMTLKTFHFAGVA M+
Sbjct: 1072 IAKISRSALDTFIALCWSKYHRSRVQPGHAVGAIGAQSIGEPGTQMTLKTFHFAGVAGMS 1131

Query: 259  VTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            +T GVPRI EIIN +S I TP+I   LE   +  +AR VK RIEKT L  V + ++ V  
Sbjct: 1132 ITQGVPRIKEIINASSTISTPVIDCELENKVSERVAREVKARIEKTYLRDVIRYVEDVWY 1191

Query: 439  SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
               A + + +D   I++ ++++  + +K +I     LK
Sbjct: 1192 PEGAYVAMRIDWDTIQKLFIDVKPHEIKAAISAHKPLK 1229

[135][TOP]
>UniRef100_C8VPJ2 Putative uncharacterized protein n=2 Tax=Emericella nidulans
            RepID=C8VPJ2_EMENI
          Length = 1445

 Score =  135 bits (340), Expect = 2e-30
 Identities = 72/179 (40%), Positives = 108/179 (60%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            D + +K LN+       ++ R L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQM
Sbjct: 1030 DERTIKGLNH----TGKLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQM 1085

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVA M++T GVPRI EIIN +  I TP+I+  L    NI  ARM KGRIEKT
Sbjct: 1086 TLKTFHFAGVAGMSITQGVPRIKEIINASKEISTPVISCELVEKRNIVAARMAKGRIEKT 1145

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIK 573
             L  +   ++   T + A L + ++   I    L++    ++++I    + K ++ +++
Sbjct: 1146 FLRDIIHYVRETWTGKEAYLTVKINWDTISALELDLTVGKIRQAIENHRRFKSEDLKLR 1204

[136][TOP]
>UniRef100_A1CLD8 DNA-directed RNA polymerase n=1 Tax=Aspergillus clavatus
            RepID=A1CLD8_ASPCL
          Length = 1449

 Score =  135 bits (339), Expect = 3e-30
 Identities = 71/179 (39%), Positives = 108/179 (60%)
 Frame = +1

Query: 37   DPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQM 216
            D +  K LN+       ++ + L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQM
Sbjct: 1030 DERSQKGLNH----TGKLTEKTLRTFIAACLLKYKRAQVEPGHAVGAVGAQSIGEPGTQM 1085

Query: 217  TLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKT 396
            TLKTFHFAGVA M++T GVPRI EIIN +  I TP+I+  L T DN+  AR+VKGRIEKT
Sbjct: 1086 TLKTFHFAGVAGMSITQGVPRIKEIINASKAISTPVISCDLVTKDNVIAARIVKGRIEKT 1145

Query: 397  TLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIK 573
             L  +   ++   T + A + + ++ + I+   L +  + +  +I    + K  + + +
Sbjct: 1146 FLRDIIHYVRETWTGKEAYITVKINWETIQNLALELKIHHIVAAIKNHKRFKADDLKFR 1204

[137][TOP]
>UniRef100_C5LQF1 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5LQF1_9ALVE
          Length = 1133

 Score =  132 bits (331), Expect = 3e-29
 Identities = 72/154 (46%), Positives = 94/154 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++  QL  F+  C  +YR   +E G  +GA  A SIGEP TQMTLKTFHFAGVASMNVTL
Sbjct: 719  LTEAQLRSFMTTCARKYRRALMEPGEAVGATSAQSIGEPATQMTLKTFHFAGVASMNVTL 778

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A +I TPII+  LE D     A MVK +I++T LG + + IK V     
Sbjct: 779  GVPRIKEIINAAKHISTPIISCKLEQDRVEAAAFMVKSKIQRTLLGDICEYIKQVYEPSG 838

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKL 549
              L + L  + +    L++  + +KE++   G L
Sbjct: 839  VYLIVKLCGETLRRMQLDLTMDELKEALCAKGAL 872

[138][TOP]
>UniRef100_C5KZ53 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5KZ53_9ALVE
          Length = 1719

 Score =  132 bits (331), Expect = 3e-29
 Identities = 72/154 (46%), Positives = 94/154 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++  QL  F+  C  +YR   +E G  +GA  A SIGEP TQMTLKTFHFAGVASMNVTL
Sbjct: 990  LTEAQLRSFMTTCARKYRRALMEPGEAVGATSAQSIGEPATQMTLKTFHFAGVASMNVTL 1049

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN A +I TPII+  LE D     A MVK +I++T LG + + IK V     
Sbjct: 1050 GVPRIKEIINAAKHISTPIISCKLEQDRVEAAAFMVKSKIQRTLLGDICEYIKQVYEPSG 1109

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKL 549
              L + L  + +    L++  + +KE++   G L
Sbjct: 1110 VYLIVKLCGETLRRMQLDLTMDELKEALCAKGAL 1143

[139][TOP]
>UniRef100_Q1DVM7 DNA-directed RNA polymerase n=1 Tax=Coccidioides immitis
            RepID=Q1DVM7_COCIM
          Length = 1430

 Score =  132 bits (331), Expect = 3e-29
 Identities = 67/148 (45%), Positives = 95/148 (64%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S + L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1041 LSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1100

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TPIIT  L   +++  A++VKGR+EKT +  +   I+   TS  
Sbjct: 1101 GVPRIKEIINASKEISTPIITCELVNKEDVRAAQIVKGRVEKTFIKDIIYYIEEAWTSSV 1160

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESI 531
            A + I +D   I+   L +    +  +I
Sbjct: 1161 AYINIKIDFSTIQALQLELTLRDILNAI 1188

[140][TOP]
>UniRef100_B6QI35 DNA-directed RNA polymerase n=1 Tax=Penicillium marneffei ATCC 18224
            RepID=B6QI35_PENMQ
          Length = 1439

 Score =  132 bits (331), Expect = 3e-29
 Identities = 69/170 (40%), Positives = 98/170 (57%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            +  +  +S   L  F+  CL +Y   KIE G  +GA+GA SIGEPGTQMTLKTFHFAGV 
Sbjct: 1035 LDHVGKLSEGSLRYFIKSCLFKYEKAKIEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVG 1094

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
            ++ +T GVPRI EIIN +  I TP+IT  L     ++ AR+ KGRIEKT L  +   I+ 
Sbjct: 1095 NLALTQGVPRIKEIINASKEISTPVITCHLAIPHELHAARIAKGRIEKTFLRDIIHYIRE 1154

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
              T +   + + L+   IE   L +    +K++I    + K  +  + +L
Sbjct: 1155 SWTDKEGYITVKLNWDTIENLQLELSLRQIKDAITSHRRFKGSDLTVDVL 1204

[141][TOP]
>UniRef100_B6H2R1 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H2R1_PENCW
          Length = 1448

 Score =  132 bits (331), Expect = 3e-29
 Identities = 72/155 (46%), Positives = 96/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++   L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1043 LTETTLRAFITACLLKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1102

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP++   L    +   AR+VKGRIEKT L  V  SI  V +   
Sbjct: 1103 GVPRIKEIINASREISTPVVACELVNRGSTIAARIVKGRIEKTFLQDVIHSITEVWSPDD 1162

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A L + L+ K IE+  L I +  + E+I    + K
Sbjct: 1163 AYLKVVLNWKTIEDLALEITTPQIVEAIKTNKRFK 1197

[142][TOP]
>UniRef100_Q18566 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis elegans
            RepID=Q18566_CAEEL
          Length = 1400

 Score =  130 bits (328), Expect = 6e-29
 Identities = 78/179 (43%), Positives = 105/179 (58%), Gaps = 3/179 (1%)
 Frame = +1

Query: 4    NTKLTETITEDDPKHLKNLNNFIPRI---SGISRRQLEVFLDICLSRYRFKKIEAGTPIG 174
            N +  +  T++  K  KNL  +   +   S +++ QL  F+++C  +      E GT +G
Sbjct: 988  NHETADLKTKESCKICKNLEAYKTSLLANSCLTKTQLCSFIELCYYKVARAITEPGTAVG 1047

Query: 175  AIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDN 354
            AI A SIGEP TQMTLKTFHFAGVASMN+T GVPRI EIIN    I TPIITA L    +
Sbjct: 1048 AIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYD 1107

Query: 355  INIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESI 531
             ++AR VK RIEKTTLG++   I+ V       L + L+ K I    L +   ++  +I
Sbjct: 1108 ESLARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAI 1166

[143][TOP]
>UniRef100_C5PCH6 DNA-directed RNA polymerase n=1 Tax=Coccidioides posadasii C735 delta
            SOWgp RepID=C5PCH6_COCP7
          Length = 1444

 Score =  130 bits (327), Expect = 7e-29
 Identities = 66/148 (44%), Positives = 94/148 (63%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S + L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1041 LSAKTLTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1100

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TPIIT  L   +++  A++VKGR+EKT +  +   I+   T   
Sbjct: 1101 GVPRIKEIINASKEISTPIITCELVNKEDVRAAQIVKGRVEKTFIKDIIYYIEEAWTGSV 1160

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESI 531
            A + I +D   I+   L +    +  +I
Sbjct: 1161 AYINIKIDFSTIQALQLELTLRDILNAI 1188

[144][TOP]
>UniRef100_C1GX38 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb01 RepID=C1GX38_PARBA
          Length = 1425

 Score =  130 bits (327), Expect = 7e-29
 Identities = 69/155 (44%), Positives = 95/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            IS R L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1008 ISARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1067

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  V   I+   T   
Sbjct: 1068 GVPRIKEIINASKEISTPVITCQLVNKGDLRAAQIVKGRVEKTFMRDVIYYIEEDWTGND 1127

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + I +D   I+   L +    +  +I +  + K
Sbjct: 1128 AYINIKIDFSTIQNLQLELGLQDILAAIKKHKRFK 1162

[145][TOP]
>UniRef100_C1GGI7 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb18 RepID=C1GGI7_PARBD
          Length = 1458

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/155 (43%), Positives = 95/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            IS R L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1041 ISARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1100

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+   T   
Sbjct: 1101 GVPRIKEIINASKEISTPVITCQLVNKGDLRAAQIVKGRVEKTFMRDIIYYIEEDWTGND 1160

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + I +D   I+   L +    +  +I +  + K
Sbjct: 1161 AYINIKIDFSTIQNLQLELGLQDILSAIKKHKRFK 1195

[146][TOP]
>UniRef100_C0SHD3 DNA-directed RNA polymerase n=1 Tax=Paracoccidioides brasiliensis
            Pb03 RepID=C0SHD3_PARBP
          Length = 1449

 Score =  130 bits (327), Expect = 7e-29
 Identities = 68/155 (43%), Positives = 95/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            IS R L  F+  CL +Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1032 ISARTLAAFITSCLVKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1091

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+   T   
Sbjct: 1092 GVPRIKEIINASKEISTPVITCQLVNKGDLRAAQIVKGRVEKTFMRDIIYYIEEDWTGND 1151

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + I +D   I+   L +    +  +I +  + K
Sbjct: 1152 AYINIKIDFSTIQNLQLELGLQDILSAIKKHKRFK 1186

[147][TOP]
>UniRef100_C6HPI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus H143
            RepID=C6HPI8_AJECH
          Length = 1333

 Score =  130 bits (326), Expect = 1e-28
 Identities = 67/155 (43%), Positives = 96/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S R L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 915  VSTRALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 974

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+   T   
Sbjct: 975  GVPRIKEIINASKEISTPVITCELVNKQDLRAAQIVKGRVEKTFVRDIIYYIEEDWTGNE 1034

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + I +D   I+   L +    +  +I +  + K
Sbjct: 1035 AYINIKIDFSTIQNLQLELTLQDILMAIKKHKRFK 1069

[148][TOP]
>UniRef100_C5GRI8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis ER-3
            RepID=C5GRI8_AJEDR
          Length = 1456

 Score =  130 bits (326), Expect = 1e-28
 Identities = 67/161 (41%), Positives = 99/161 (61%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            I   + +S + L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1032 IDHTAKVSTKALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVA 1091

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
             M++T GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+ 
Sbjct: 1092 GMSITQGVPRIKEIINASKEISTPVITCELVNKHDLRAAQIVKGRVEKTFIRDIIYYIEE 1151

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
              T   A + I +D   I+   L ++   +  +I +  + K
Sbjct: 1152 DWTGNEAYINIKIDFSTIQNLQLELNLQDILVAIKKHKRFK 1192

[149][TOP]
>UniRef100_C4JWU1 DNA-directed RNA polymerase n=1 Tax=Uncinocarpus reesii 1704
            RepID=C4JWU1_UNCRE
          Length = 1435

 Score =  130 bits (326), Expect = 1e-28
 Identities = 67/154 (43%), Positives = 96/154 (62%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            I   + +S + L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1035 ISHTAKLSAKTLTAFVTSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVA 1094

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
             M++T GVPRI EIIN +  I TPIIT  L   +++  A++VKGR+EKT +  +   I+ 
Sbjct: 1095 GMSITQGVPRIKEIINASKEISTPIITCELVNKEDLRAAQIVKGRVEKTFIKDIIYYIEE 1154

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESI 531
              T   A + I +D   I+   L +    +  +I
Sbjct: 1155 AWTGSVAYINIKIDFSAIQALQLELTLRDILNAI 1188

[150][TOP]
>UniRef100_C0NZL8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus G186AR
            RepID=C0NZL8_AJECG
          Length = 1456

 Score =  130 bits (326), Expect = 1e-28
 Identities = 67/155 (43%), Positives = 96/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S R L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1038 VSTRALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1097

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+   T   
Sbjct: 1098 GVPRIKEIINASKEISTPVITCELVNKQDLRAAQIVKGRVEKTFVRDIIYYIEEDWTGNE 1157

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + I +D   I+   L +    +  +I +  + K
Sbjct: 1158 AYINIKIDFSTIQNLQLELTLQDILMAIKKHKRFK 1192

[151][TOP]
>UniRef100_A6RGX8 DNA-directed RNA polymerase n=1 Tax=Ajellomyces capsulatus NAm1
            RepID=A6RGX8_AJECN
          Length = 1439

 Score =  130 bits (326), Expect = 1e-28
 Identities = 67/155 (43%), Positives = 96/155 (61%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S R L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1021 VSTRALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1080

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+   T   
Sbjct: 1081 GVPRIKEIINASKEISTPVITCELVNKQDLRAAQIVKGRVEKTFVRDIIYYIEEDWTGNE 1140

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
            A + I +D   I+   L +    +  +I +  + K
Sbjct: 1141 AYINIKIDFSTIQNLQLELTLQDILMAIKKHKRFK 1175

[152][TOP]
>UniRef100_UPI000022105F Hypothetical protein CBG05787 n=1 Tax=Caenorhabditis briggsae AF16
            RepID=UPI000022105F
          Length = 1402

 Score =  129 bits (325), Expect = 1e-28
 Identities = 73/151 (48%), Positives = 93/151 (61%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNV 261
            S ++R QL  F+ +C  +      E GT +GAI A SIGEP TQMTLKTFHFAGVASMN+
Sbjct: 1017 SCLTRSQLLSFIQLCYYKIARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNI 1076

Query: 262  TLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            T GVPRI EIIN    I TPIITA L    + ++AR VK RIEKTTLG++   I+ V   
Sbjct: 1077 TQGVPRIKEIINAVKTISTPIITASLLDPYDESLARRVKARIEKTTLGEICDYIEEVYLP 1136

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESIL 534
                L + L+ K I    L +   ++  +I+
Sbjct: 1137 DDYFLLVKLNSKRIRLLQLEVSLESISYAIV 1167

[153][TOP]
>UniRef100_A8X1M6 DNA-directed RNA polymerase n=1 Tax=Caenorhabditis briggsae
            RepID=A8X1M6_CAEBR
          Length = 1435

 Score =  129 bits (325), Expect = 1e-28
 Identities = 73/151 (48%), Positives = 93/151 (61%)
 Frame = +1

Query: 82   SGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNV 261
            S ++R QL  F+ +C  +      E GT +GAI A SIGEP TQMTLKTFHFAGVASMN+
Sbjct: 1034 SCLTRSQLLSFIQLCYYKIARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNI 1093

Query: 262  TLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            T GVPRI EIIN    I TPIITA L    + ++AR VK RIEKTTLG++   I+ V   
Sbjct: 1094 TQGVPRIKEIINAVKTISTPIITASLLDPYDESLARRVKARIEKTTLGEICDYIEEVYLP 1153

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESIL 534
                L + L+ K I    L +   ++  +I+
Sbjct: 1154 DDYFLLVKLNSKRIRLLQLEVSLESISYAIV 1184

[154][TOP]
>UniRef100_C5JRK1 DNA-directed RNA polymerase n=1 Tax=Ajellomyces dermatitidis SLH14081
            RepID=C5JRK1_AJEDS
          Length = 1456

 Score =  129 bits (324), Expect = 2e-28
 Identities = 67/161 (41%), Positives = 98/161 (60%)
 Frame = +1

Query: 70   IPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVA 249
            I   + +S   L  F+  CL++Y+  ++E G  +GA+GA SIGEPGTQMTLKTFHFAGVA
Sbjct: 1032 IDHTAKVSTNALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVA 1091

Query: 250  SMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
             M++T GVPRI EIIN +  I TP+IT  L    ++  A++VKGR+EKT +  +   I+ 
Sbjct: 1092 GMSITQGVPRIKEIINASKEISTPVITCELVNKHDLRAAQIVKGRVEKTFIRDIIYYIEE 1151

Query: 430  VATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
              T   A + I +D   I+   L ++   +  +I +  + K
Sbjct: 1152 DWTGNEAYINIKIDFSTIQNLQLELNLQDILVAIKKHKRFK 1192

[155][TOP]
>UniRef100_C5FEK3 DNA-directed RNA polymerase n=1 Tax=Microsporum canis CBS 113480
            RepID=C5FEK3_NANOT
          Length = 1443

 Score =  128 bits (322), Expect = 3e-28
 Identities = 68/139 (48%), Positives = 89/139 (64%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S R L+ F+  CL +Y    +E G  IGAIGA SIGEPGTQMTLKTFHFAGVA M++T 
Sbjct: 1036 LSARTLKAFIASCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQ 1095

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPRI EIIN +  I TPIIT  L    ++  A +VKGRIEK  L  +   I+ + +  +
Sbjct: 1096 GVPRIKEIINASKEISTPIITCELTNKTDMRAAEIVKGRIEKLFLKDIVYYIEEIRSEST 1155

Query: 448  AALFISLDEKIIEEAYLNI 504
            + + I +D   I++  L I
Sbjct: 1156 SFIKIKVDFSTIDKLQLEI 1174

[156][TOP]
>UniRef100_D0A1W8 DNA-directed RNA polymerase iii largest subunit (Rna polymerase iii
            largest subunit, putative) n=1 Tax=Trypanosoma brucei
            gambiense DAL972 RepID=D0A1W8_TRYBG
          Length = 1530

 Score =  125 bits (314), Expect = 2e-27
 Identities = 72/183 (39%), Positives = 109/183 (59%), Gaps = 8/183 (4%)
 Frame = +1

Query: 10   KLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAH 189
            K+ ++  E     L++L      +  ++R  +  F+  C S+Y  K  E GTP GAI A 
Sbjct: 1092 KVKDSKEEGRVSELRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQ 1151

Query: 190  SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITA---ILETDDN-- 354
            S+GEP TQMTL+TFHFAGVASM++T GVPR++E+IN   NI TP++TA   ++E ++N  
Sbjct: 1152 SVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHC 1211

Query: 355  ---INIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKE 525
                  AR VK +IE+  L +V   I  V +     L + L+  +I + +L I++ TV++
Sbjct: 1212 EIFRKRARFVKAQIERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQ 1271

Query: 526  SIL 534
             IL
Sbjct: 1272 RIL 1274

[157][TOP]
>UniRef100_Q38BW7 DNA-directed RNA polymerase n=1 Tax=Trypanosoma brucei
            RepID=Q38BW7_9TRYP
          Length = 1530

 Score =  124 bits (310), Expect = 7e-27
 Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 8/170 (4%)
 Frame = +1

Query: 49   LKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKT 228
            L++L      +  ++R  +  F+  C S+Y  K  E GTP GAI A S+GEP TQMTL+T
Sbjct: 1105 LRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRT 1164

Query: 229  FHFAGVASMNVTLGVPRIMEIINGASNIKTPIITA---ILETDDN-----INIARMVKGR 384
            FHFAGVASM++T GVPR++E+IN   NI TP++TA   ++E ++N        AR VK +
Sbjct: 1165 FHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVKAQ 1224

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESIL 534
            IE+  L +V   I  V +     L + L+  +I + +L I++ TV++ IL
Sbjct: 1225 IERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQRIL 1274

[158][TOP]
>UniRef100_P08968 DNA-directed RNA polymerase III subunit RPC1 n=1 Tax=Trypanosoma
            brucei brucei RepID=RPC1_TRYBB
          Length = 1530

 Score =  124 bits (310), Expect = 7e-27
 Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 8/170 (4%)
 Frame = +1

Query: 49   LKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKT 228
            L++L      +  ++R  +  F+  C S+Y  K  E GTP GAI A S+GEP TQMTL+T
Sbjct: 1105 LRDLEMLQTELLPLTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRT 1164

Query: 229  FHFAGVASMNVTLGVPRIMEIINGASNIKTPIITA---ILETDDN-----INIARMVKGR 384
            FHFAGVASM++T GVPR++E+IN   NI TP++TA   ++E ++N        AR VK +
Sbjct: 1165 FHFAGVASMSITQGVPRLVEVINANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVKAQ 1224

Query: 385  IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESIL 534
            IE+  L +V   I  V +     L + L+  +I + +L I++ TV++ IL
Sbjct: 1225 IERVLLREVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVRQRIL 1274

[159][TOP]
>UniRef100_C4V991 DNA-directed RNA polymerase n=1 Tax=Nosema ceranae BRL01
            RepID=C4V991_NOSCE
          Length = 1335

 Score =  123 bits (308), Expect = 1e-26
 Identities = 65/155 (41%), Positives = 94/155 (60%)
 Frame = +1

Query: 91   SRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLG 270
            +R    +F D+   + +   IE GT +GAI   SIGEPGTQMTLKTFHFAGVASMN+TLG
Sbjct: 985  TREFFNLFFDLIKQKIKNCLIEPGTAVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITLG 1044

Query: 271  VPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSA 450
            VPR++EIIN   NI TPII   L+ +D +N A++VKGR+ K     +   +         
Sbjct: 1045 VPRLIEIINAVVNINTPIINVSLDKNDLLN-AQIVKGRVLKVLFKDICNHVTDSVCKDGI 1103

Query: 451  ALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKL 555
             +   +D  +I +  L ID  ++K+++  T ++ +
Sbjct: 1104 FIDFKIDLNLINKLRLQIDMKSIKQNLNITEQITI 1138

[160][TOP]
>UniRef100_C4QF52 DNA-directed RNA polymerase n=1 Tax=Schistosoma mansoni
            RepID=C4QF52_SCHMA
          Length = 1342

 Score =  122 bits (307), Expect = 2e-26
 Identities = 73/166 (43%), Positives = 99/166 (59%)
 Frame = +1

Query: 55   NLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFH 234
            N +N I +   ++R QL +FL     +Y    IE GT +GA+   S+GEP TQMTLKTFH
Sbjct: 1004 NGSNLINQNERLTRTQLRIFLTHVKEKYEKALIEPGTAVGALCGQSVGEPATQMTLKTFH 1063

Query: 235  FAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVA 414
            FAGVASMN+T GVPR+ EI+N A+ IKTP+I   L    + ++AR VK  IE T L  ++
Sbjct: 1064 FAGVASMNITQGVPRMREIVNAAARIKTPLICVTLTDPFSASLARQVKLSIEPTRLADIS 1123

Query: 415  KSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
             S+    T     + I LD+K ++     I +  V  +I QT KLK
Sbjct: 1124 LSLSQCLTPEYVYVAIKLDKKRMDRR--GITTPQVATAI-QTTKLK 1166

[161][TOP]
>UniRef100_Q8SRM3 DNA-directed RNA polymerase n=1 Tax=Encephalitozoon cuniculi
            RepID=Q8SRM3_ENCCU
          Length = 1349

 Score =  121 bits (304), Expect = 3e-26
 Identities = 63/146 (43%), Positives = 91/146 (62%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S+  +E F  +   +     +E GT +GAI   SIGEPGTQMTLKTFHFAGVASMN+TL
Sbjct: 998  LSKDFIETFFSMVSQKMMNLIVEPGTTVGAIAGQSIGEPGTQMTLKTFHFAGVASMNITL 1057

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRS 447
            GVPR+ EIIN   NI TPII A L+   ++    ++KGR+++ +L  V  S+  V +   
Sbjct: 1058 GVPRLKEIINAVCNISTPIINAELDDPHDLFRTEVIKGRLDRISLKDVCSSLTEVISKDE 1117

Query: 448  AALFISLDEKIIEEAYLNIDSNTVKE 525
              L I +D + +    LN+D + +++
Sbjct: 1118 IFLDIRVDLESLSRLKLNLDIHKIEK 1143

[162][TOP]
>UniRef100_A8IFE0 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IFE0_CHLRE
          Length = 1167

 Score =  119 bits (299), Expect = 1e-25
 Identities = 61/82 (74%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
 Frame = +1

Query: 190  SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAI-LETDDNINIA 366
            SIGEPGTQMTLKTFHFAGVASMNVTLGVPRI EIIN A  I TPII  + L  D+++  A
Sbjct: 829  SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAARTISTPIIKVVALAVDNDVKAA 888

Query: 367  RMVKGRIEKTTLGQVAKSIKVV 432
            R+VKGR+EKTTLGQVA+ IK+V
Sbjct: 889  RLVKGRLEKTTLGQVARHIKIV 910

[163][TOP]
>UniRef100_Q4DZA9 DNA-directed RNA polymerase n=1 Tax=Trypanosoma cruzi
            RepID=Q4DZA9_TRYCR
          Length = 1553

 Score =  117 bits (293), Expect = 6e-25
 Identities = 70/164 (42%), Positives = 93/164 (56%), Gaps = 23/164 (14%)
 Frame = +1

Query: 112  FLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEI 291
            FL  C S+Y  K  E GTP GAI A S+GEP TQMTL+TFHFAGVASM++T GVPR++EI
Sbjct: 1132 FLAQCASKYILKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQGVPRLVEI 1191

Query: 292  INGASNIKTPIITAIL--------------------ETDDNINI---ARMVKGRIEKTTL 402
            IN   NI TP++TA +                    E D         R VK ++E+  L
Sbjct: 1192 INANRNIATPVVTAPVRRHRRGKSLSIKQEVVGESCEEDSQEEFEKRVRRVKSQVERVLL 1251

Query: 403  GQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESIL 534
             +VA  I  V TS    L + L+  +I + +L I++ TV++ IL
Sbjct: 1252 KEVASEIVEVCTSTEFYLRVHLNMSLIAKLWLPINAITVRQRIL 1295

[164][TOP]
>UniRef100_Q22M85 DNA-directed RNA polymerase n=1 Tax=Tetrahymena thermophila SB210
            RepID=Q22M85_TETTH
          Length = 1418

 Score =  116 bits (290), Expect = 1e-24
 Identities = 68/165 (41%), Positives = 102/165 (61%), Gaps = 4/165 (2%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            I++RQ+  F      RY    +E G  +GA+GA SI EP TQMTLK+FHFAGVASMN+T 
Sbjct: 1020 ITKRQINYFFKTLWERYPQMLVEPGEAVGAVGATSISEPATQMTLKSFHFAGVASMNITQ 1079

Query: 268  GVPRIMEIINGASNIKTPII-TAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSR 444
            GVPR+ EII+ A  I TPII   +L    + +  R ++ +IEKT LG+++   + V + +
Sbjct: 1080 GVPRMKEIIDAAKKISTPIIDVKLLPQFQSEHSYRSIRLQIEKTYLGEISNFYQEVYSPK 1139

Query: 445  SAALFISLDEKIIEEAY---LNIDSNTVKESILQTGKLKLKEKEI 570
               L+I  ++K +E+     L I  +++K+ IL+  K  +KE +I
Sbjct: 1140 DCHLYIEYNKKKLEQFRLYGLEIPLSSIKKGILEIAK-DIKEDQI 1183

[165][TOP]
>UniRef100_A4I9K6 DNA-directed RNA polymerase n=1 Tax=Leishmania infantum
            RepID=A4I9K6_LEIIN
          Length = 1590

 Score =  116 bits (290), Expect = 1e-24
 Identities = 66/157 (42%), Positives = 93/157 (59%), Gaps = 13/157 (8%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +++  L  FL+    +   K  E GTP GAI A S+GEP TQMTL+TFHFAGVASM++T 
Sbjct: 1120 LTKGMLLHFLEASARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1179

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNI-------------NIARMVKGRIEKTTLGQ 408
            GVPR++EIIN   +I TP+ITA +  +D                 AR VKG +E+  L +
Sbjct: 1180 GVPRLVEIINANKSIATPVITAPIVLEDEFTSIDLAPASRTQYQAARAVKGLMERVLLKE 1239

Query: 409  VAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTV 519
            +A+ +  V T R+  + I L+ ++IE   L ID+  V
Sbjct: 1240 IAREMVEVVTPRAYYIHIFLNMELIERLLLPIDAAVV 1276

[166][TOP]
>UniRef100_Q4Q3H2 DNA-directed RNA polymerase n=1 Tax=Leishmania major
            RepID=Q4Q3H2_LEIMA
          Length = 1582

 Score =  114 bits (286), Expect = 4e-24
 Identities = 65/157 (41%), Positives = 92/157 (58%), Gaps = 13/157 (8%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +++  L  FL+    +   K  E GTP GAI A S+GEP TQMTL+TFHFAGVASM++T 
Sbjct: 1115 LTKGMLLHFLEASARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1174

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNI-------------NIARMVKGRIEKTTLGQ 408
            GVPR++EIIN   +I TP+ITA +  +D                 AR VKG +E+  L +
Sbjct: 1175 GVPRLVEIINANKSIATPVITAPIVLEDEFTSIDLASASRTQYQAARAVKGLMERVLLKE 1234

Query: 409  VAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTV 519
            + + +  V T R+  + I L+ ++IE   L ID+  V
Sbjct: 1235 ITREMVEVVTPRAYYIHIFLNMELIERLLLPIDAAVV 1271

[167][TOP]
>UniRef100_A4HAF0 DNA-directed RNA polymerase n=1 Tax=Leishmania braziliensis
            RepID=A4HAF0_LEIBR
          Length = 1581

 Score =  114 bits (285), Expect = 5e-24
 Identities = 67/157 (42%), Positives = 89/157 (56%), Gaps = 13/157 (8%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R  L  F +    +   K  E GTP GAI A S+GEP TQMTL+TFHFAGVASM++T 
Sbjct: 1114 LTRGMLLRFFEDSARKVHRKLCEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1173

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNI-------------NIARMVKGRIEKTTLGQ 408
            GVPR++EIIN   NI TP+ITA +  +D                 AR VKG +E+  L +
Sbjct: 1174 GVPRLVEIINANKNIATPVITAPILLEDEFTSIDLASARRTQYQAARAVKGLMERVLLKE 1233

Query: 409  VAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTV 519
            + + +  V T R   + I LD  +IE   L ID+  V
Sbjct: 1234 ITREMVEVVTPRQYYIQIFLDIGLIERLLLPIDAAVV 1270

[168][TOP]
>UniRef100_C6LP76 DNA-directed RNA polymerase n=1 Tax=Giardia intestinalis ATCC 50581
            RepID=C6LP76_GIALA
          Length = 1742

 Score =  113 bits (283), Expect = 9e-24
 Identities = 71/169 (42%), Positives = 96/169 (56%), Gaps = 14/169 (8%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            I+R+ ++ FL     +Y    +E G+P GA+ A S+GEP TQMTLK+FH AG+ASMN+T 
Sbjct: 1267 ITRKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQ 1326

Query: 268  GVPRIMEIINGASNIKTPIITAILE------------TDDNINIARMVKGRIEKTTLGQV 411
            GVPR+ EI++G   I TPI T  L             T+  +  ARM+K  IE T LGQ+
Sbjct: 1327 GVPRLKEIVDGVVKISTPITTVELHIDADEEEDPAIITEKYLEKARMMKNIIECTYLGQI 1386

Query: 412  AKSIKVVATSRSAALFISLDEKIIEEAYLN--IDSNTVKESILQTGKLK 552
            + SI    +  S  + ++LD KII +  L   I   TV  SIL   K K
Sbjct: 1387 SASIIECYSQSSCHIEVNLDMKIIADMGLAGVITVETVVASILHNDKAK 1435

[169][TOP]
>UniRef100_A9CTM9 DNA-directed RNA polymerase n=1 Tax=Enterocytozoon bieneusi H348
            RepID=A9CTM9_ENTBH
          Length = 1174

 Score =  110 bits (274), Expect = 1e-22
 Identities = 58/98 (59%), Positives = 70/98 (71%)
 Frame = +1

Query: 145  KKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPI 324
            K IE GT +GAI A SIGEPGTQMTLKTFHFAGVASMN+TLGVPRI EIIN  S I TPI
Sbjct: 847  KFIEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINATSTISTPI 906

Query: 325  ITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
            I+     + N+  A ++K ++EK  L  + K I ++ T
Sbjct: 907  ISV---KNVNLQDAYIIKQKLEKNVLKDIIKRIDIMYT 941

[170][TOP]
>UniRef100_P25202 DNA-directed RNA polymerase III subunit RPC1 n=2 Tax=Giardia
            intestinalis RepID=RPC1_GIALA
          Length = 1741

 Score =  109 bits (272), Expect = 2e-22
 Identities = 68/169 (40%), Positives = 95/169 (56%), Gaps = 14/169 (8%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++++ ++ FL     +Y    +E G+P GA+ A S+GEP TQMTLK+FH AG+ASMN+T 
Sbjct: 1267 LTKKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQ 1326

Query: 268  GVPRIMEIINGASNIKTPIITAILE------------TDDNINIARMVKGRIEKTTLGQV 411
            GVPR+ EI++G   I TPI T  L             T+  +  ARM+K  IE T LGQ+
Sbjct: 1327 GVPRLKEIVDGVVKISTPITTVELHVDVDKEELAATVTEKYLEKARMMKNIIECTYLGQI 1386

Query: 412  AKSIKVVATSRSAALFISLDEKIIEEAYLN--IDSNTVKESILQTGKLK 552
            + SI    +     + ++LD KII +  L   I   TV  SIL   K K
Sbjct: 1387 SASIIECYSQSVCHIEVNLDMKIIADMGLAGIITVETVVASILHNDKAK 1435

[171][TOP]
>UniRef100_Q0U9K8 DNA-directed RNA polymerase n=1 Tax=Phaeosphaeria nodorum
            RepID=Q0U9K8_PHANO
          Length = 1720

 Score =  108 bits (270), Expect = 3e-22
 Identities = 60/149 (40%), Positives = 91/149 (61%), Gaps = 2/149 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +S++ L+  L     R+    +  G  +G + A SIGEP TQMTL TFHFAGV+S NVTL
Sbjct: 1058 LSKKALDYILGELQDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTL 1117

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNI--NIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A+NIKTP +  + +TD N     A++++ RIE TTL  + +S+++    
Sbjct: 1118 GVPRLKEILNIAANIKTPSM-LVRQTDKNAGQQEAKVLRSRIELTTLRSLTQSVELYYDP 1176

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKES 528
               A  +  D+ ++E  ++  + N V ES
Sbjct: 1177 EIQATLVESDQDMVESYFIVPEENEVIES 1205

[172][TOP]
>UniRef100_UPI000151A8B3 hypothetical protein PGUG_01105 n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151A8B3
          Length = 1018

 Score =  106 bits (265), Expect = 1e-21
 Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           ++R   E  +    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 304 LNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 363

Query: 268 GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           GVPR+ EI+N A NIKTP +T  LE D   +I  A++V+  IE TTL  V  S ++    
Sbjct: 364 GVPRLKEILNVAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEIFYDP 423

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
              +  +  D   + EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 424 DPRSTVLEEDYDTV-EAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQL 474

[173][TOP]
>UniRef100_A5E6J4 DNA-directed RNA polymerase n=1 Tax=Lodderomyces elongisporus
            RepID=A5E6J4_LODEL
          Length = 1745

 Score =  106 bits (265), Expect = 1e-21
 Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 11/158 (6%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            ++++   +  G  +G + A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EI+N A N
Sbjct: 1046 TQFQKSVVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1105

Query: 310  IKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP +T  L  E   +I +A++V+  IE TTL  V  S ++          I  D   +
Sbjct: 1106 IKTPALTVYLDPEVASDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTVIEEDYDTV 1165

Query: 484  EEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
             EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 1166 -EAYFAIPDQKVEESIEKQSPWLLRLELDRAKMLDKQL 1202

[174][TOP]
>UniRef100_B7R290 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Thermococcus sp.
           AM4 RepID=B7R290_9EURY
          Length = 391

 Score =  106 bits (265), Expect = 1e-21
 Identities = 54/142 (38%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + + ++E  ++  ++ Y+   +E G PIG + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 37  LKKAEVEAIIEDAVNEYKRALVEPGEPIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 96

Query: 268 GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TP++T  L+ D   ++  AR V  RIE TT+  +A+ + +    
Sbjct: 97  GLPRIIEIVDARKNPSTPVMTVFLDEDHRHDLEKAREVARRIEGTTIENLAREMSI--DI 154

Query: 442 RSAALFISLDEKIIEEAYLNID 507
            +    + LD + +E++ L+++
Sbjct: 155 LNFEFIVELDPERLEKSGLDME 176

[175][TOP]
>UniRef100_A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) n=1
            Tax=Pichia guilliermondii RepID=RPB1_PICGU
          Length = 1579

 Score =  106 bits (265), Expect = 1e-21
 Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  +    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 870  LNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 929

Query: 268  GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  LE D   +I  A++V+  IE TTL  V  S ++    
Sbjct: 930  GVPRLKEILNVAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEIFYDP 989

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
               +  +  D   + EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 990  DPRSTVLEEDYDTV-EAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQL 1040

[176][TOP]
>UniRef100_UPI0000F24379 DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) n=1 Tax=Pichia stipitis CBS 6054
            RepID=UPI0000F24379
          Length = 1739

 Score =  106 bits (264), Expect = 1e-21
 Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  +    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1038 LNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1097

Query: 268  GVPRIMEIINGASNIKTPIITAILE--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  L+    D+I  A++V+  IE T+L  V  S ++    
Sbjct: 1098 GVPRLKEILNVAKNIKTPALTVYLDPALSDDIEKAKVVQSAIEHTSLKNVTSSTEIYYDP 1157

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
                  I  D   + EAY +I    V+ESI         L+  + K+ +K++
Sbjct: 1158 DPRTTVIEEDYDTV-EAYFSIPDEKVEESIEKQSPWLLRLELDRAKMLDKQL 1208

[177][TOP]
>UniRef100_UPI00003BD271 hypothetical protein DEHA0A14036g n=1 Tax=Debaryomyces hansenii
            CBS767 RepID=UPI00003BD271
          Length = 1749

 Score =  106 bits (264), Expect = 1e-21
 Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +SR   E  +    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1043 LSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1102

Query: 268  GVPRIMEIINGASNIKTPIITAILETDD--NINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  LE +   +I  A++V+  IE TTL  V  + ++    
Sbjct: 1103 GVPRLKEILNVAKNIKTPALTVYLEKESAADIEKAKIVQSAIEHTTLKNVTSATEIFYDP 1162

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
               +  I  D   + EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 1163 DPRSTVIEEDYDTV-EAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQL 1213

[178][TOP]
>UniRef100_B5RSM9 DNA-directed RNA polymerase n=1 Tax=Debaryomyces hansenii
            RepID=B5RSM9_DEBHA
          Length = 1749

 Score =  106 bits (264), Expect = 1e-21
 Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +SR   E  +    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1043 LSRISFEWVMGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1102

Query: 268  GVPRIMEIINGASNIKTPIITAILETDD--NINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  LE +   +I  A++V+  IE TTL  V  + ++    
Sbjct: 1103 GVPRLKEILNVAKNIKTPALTVYLEKESAADIEKAKIVQSAIEHTTLKNVTSATEIFYDP 1162

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
               +  I  D   + EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 1163 DPRSTVIEEDYDTV-EAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQL 1213

[179][TOP]
>UniRef100_A3GID7 DNA-directed RNA polymerase n=1 Tax=Pichia stipitis
            RepID=A3GID7_PICST
          Length = 1739

 Score =  106 bits (264), Expect = 1e-21
 Identities = 65/172 (37%), Positives = 96/172 (55%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  +    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1038 LNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1097

Query: 268  GVPRIMEIINGASNIKTPIITAILE--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  L+    D+I  A++V+  IE T+L  V  S ++    
Sbjct: 1098 GVPRLKEILNVAKNIKTPALTVYLDPALSDDIEKAKVVQSAIEHTSLKNVTSSTEIYYDP 1157

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
                  I  D   + EAY +I    V+ESI         L+  + K+ +K++
Sbjct: 1158 DPRTTVIEEDYDTV-EAYFSIPDEKVEESIEKQSPWLLRLELDRAKMLDKQL 1208

[180][TOP]
>UniRef100_C5A207 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=RPOA2_THEGJ
          Length = 391

 Score =  106 bits (264), Expect = 1e-21
 Identities = 53/142 (37%), Positives = 90/142 (63%), Gaps = 2/142 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + + ++E  ++  ++ YR   +E G PIG + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 37  LKKAEVEAIIEDAVNEYRKALVEPGEPIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 96

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNINI--ARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TP++T  L+ +   ++  AR V  RIE TT+  +A+ + +    
Sbjct: 97  GLPRIIEIVDARKNPSTPVMTVFLDEEHRYDLEKAREVARRIEGTTIENLAREMSI--DI 154

Query: 442 RSAALFISLDEKIIEEAYLNID 507
            +    + +D + +E++ L+++
Sbjct: 155 LNFEFIVEIDPERLEKSGLDME 176

[181][TOP]
>UniRef100_Q976A6 DNA-directed RNA polymerase subunit A'' n=1 Tax=Sulfolobus tokodaii
           RepID=RPOA2_SULTO
          Length = 392

 Score =  105 bits (262), Expect = 3e-21
 Identities = 66/192 (34%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
 Frame = +1

Query: 10  KLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAH 189
           KL + + +D  + L N +        ++   ++  +D+ +  Y+   IE G  +G + A 
Sbjct: 20  KLPDKVIQDLREALLNTD------INLTESDVDKIIDLAVKDYQESLIEPGEAVGIVSAQ 73

Query: 190 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL------ETDD 351
           SIGEPGTQMTL+TFHFAG+  +NVTLG+PR++EI++      TPI+T  L      + + 
Sbjct: 74  SIGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDARKTPSTPIMTIYLTDEYKYDKEK 133

Query: 352 NINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESI 531
            + IAR    +IE T +  V  SI V  T+ S  + I LDE+++++    +D ++VK+ I
Sbjct: 134 ALEIAR----KIEYTKIENVISSISVDITNMS--ITIQLDEEMLKDK--GVDPSSVKKII 185

Query: 532 --LQTGKLKLKE 561
             L+ GK+++++
Sbjct: 186 SKLKLGKIRIED 197

[182][TOP]
>UniRef100_Q8MX30 DNA-directed RNA polymerase (Fragment) n=1 Tax=Naegleria gruberi
            RepID=Q8MX30_NAEGR
          Length = 1590

 Score =  105 bits (261), Expect = 3e-21
 Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 2/127 (1%)
 Frame = +1

Query: 154  EAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITA 333
            + G  +G++ A SIGEP TQMTL TFHFAGV+S NVTLGVPR+ E++N A NIKTP +T 
Sbjct: 1025 QPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPGLTI 1084

Query: 334  ILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNID 507
             L  +   +   A+MVK  +E TTLG V  +  +V     A   I  D + IEE    + 
Sbjct: 1085 YLNNEYIGDFEKAKMVKEDLEYTTLGHVTAAASIVYDPEPANSVIEEDREFIEELLEELK 1144

Query: 508  SNTVKES 528
               V +S
Sbjct: 1145 DTAVLDS 1151

[183][TOP]
>UniRef100_Q5ACI7 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=Q5ACI7_CANAL
          Length = 1728

 Score =  104 bits (260), Expect = 4e-21
 Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  +    ++++   +  G  +G + A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1038 LNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1097

Query: 268  GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  L  E   +I  A++V+  IE TTL  V  S ++    
Sbjct: 1098 GVPRLKEILNVAKNIKTPAMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDP 1157

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
                  I  D   + EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 1158 DPRTTVIEDDYDTV-EAYFAIPDQKVEESIDKQSPWLLRLELDRAKMLDKQL 1208

[184][TOP]
>UniRef100_C4YN85 DNA-directed RNA polymerase n=1 Tax=Candida albicans
            RepID=C4YN85_CANAL
          Length = 1742

 Score =  104 bits (260), Expect = 4e-21
 Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  +    ++++   +  G  +G + A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1038 LNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1097

Query: 268  GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  L  E   +I  A++V+  IE TTL  V  S ++    
Sbjct: 1098 GVPRLKEILNVAKNIKTPAMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDP 1157

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
                  I  D   + EAY  I    V+ESI         L+  + K+ +K++
Sbjct: 1158 DPRTTVIEDDYDTV-EAYFAIPDQKVEESIDKQSPWLLRLELDRAKMLDKQL 1208

[185][TOP]
>UniRef100_C4R4Y0 DNA-directed RNA polymerase n=1 Tax=Pichia pastoris GS115
            RepID=C4R4Y0_PICPG
          Length = 1743

 Score =  104 bits (260), Expect = 4e-21
 Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  L    ++++   +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1039 LNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1098

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDNINI--ARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  L+ +  ++I  A++++  IE TTL  V  + ++    
Sbjct: 1099 GVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAKVIQSSIEYTTLKNVTSATEIYYDP 1158

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI 531
               +  I  D   + EAY +I    V+E+I
Sbjct: 1159 DPTSTVIEEDFDTV-EAYFSIPDEKVEETI 1187

[186][TOP]
>UniRef100_Q9BMP2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Stylonychia mytilus
            RepID=Q9BMP2_STYMT
          Length = 1678

 Score =  103 bits (258), Expect = 7e-21
 Identities = 58/120 (48%), Positives = 75/120 (62%), Gaps = 2/120 (1%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR+    +  G  +G+IGA S+GEP TQMTL TFHFAGV++ NVTLGVPR+ EIIN A N
Sbjct: 967  SRFDQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKN 1026

Query: 310  IKTPIITAILETDD--NINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP +   L+  D  +  IA ++ GRIE TTL  V KS  +          +  DE++I
Sbjct: 1027 IKTPSMKIFLKDKDKQDERIATIIGGRIEHTTLCHVVKSSAIYYDPDPERTIVREDEELI 1086

[187][TOP]
>UniRef100_C5LSN9 DNA-directed RNA polymerase n=1 Tax=Perkinsus marinus ATCC 50983
            RepID=C5LSN9_9ALVE
          Length = 1667

 Score =  103 bits (258), Expect = 7e-21
 Identities = 56/138 (40%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            + +R ++  L     R+    + AG  +G I A SIGEP TQMTL TFHFAGV S NVTL
Sbjct: 1076 LGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTL 1135

Query: 268  GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EIIN A N+KTP +T  L  D   +   A+ V+  +E T+LG++    +++   
Sbjct: 1136 GVPRLKEIINVAKNLKTPSMTVYLHPDYASDDAKAKQVQSELEHTSLGKITSYTQILFDP 1195

Query: 442  RSAALFISLDEKIIEEAY 495
                  +  D +++EE Y
Sbjct: 1196 DVRTSILEEDRQLVEEYY 1213

[188][TOP]
>UniRef100_B9WN64 DNA-directed RNA polymerase n=1 Tax=Candida dubliniensis CD36
            RepID=B9WN64_CANDC
          Length = 1735

 Score =  103 bits (256), Expect = 1e-20
 Identities = 65/172 (37%), Positives = 94/172 (54%), Gaps = 11/172 (6%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  L    ++++   +  G  +G + A SIGEP TQMTL TFH+AGV+S NVTL
Sbjct: 1038 LNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTL 1097

Query: 268  GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A NIKTP +T  L  E   +I  A++V+  IE TTL  V  S ++    
Sbjct: 1098 GVPRLKEILNVAKNIKTPAMTVYLDPEVASDIEKAKIVQSAIEHTTLKNVTSSAEIYYDP 1157

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI---------LQTGKLKLKEKEI 570
                  I  D   + EAY  I    V+E+I         L+  + K+ +K++
Sbjct: 1158 DPRTTVIEDDYDTV-EAYFAIPDQKVEETIDKQSPWLLRLELDRAKMLDKQL 1208

[189][TOP]
>UniRef100_C4Y5N4 DNA-directed RNA polymerase n=1 Tax=Clavispora lusitaniae ATCC 42720
            RepID=C4Y5N4_CLAL4
          Length = 1402

 Score =  102 bits (255), Expect = 2e-20
 Identities = 61/151 (40%), Positives = 87/151 (57%), Gaps = 11/151 (7%)
 Frame = +1

Query: 151  IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
            +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EI+N A NIKTP +T
Sbjct: 1018 VHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALT 1077

Query: 331  AILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
              L+ +   +I  A++V+  IE TTL  V  + ++       +  I  D   + EAY  I
Sbjct: 1078 VYLDPEIASDIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTV-EAYFAI 1136

Query: 505  DSNTVKESI---------LQTGKLKLKEKEI 570
                V+E+I         L+  + K+ +K++
Sbjct: 1137 PDEKVEETIDNQSPWLLRLELDRAKMLDKQL 1167

[190][TOP]
>UniRef100_UPI00006A2ADB UPI00006A2ADB related cluster n=1 Tax=Xenopus (Silurana) tropicalis
           RepID=UPI00006A2ADB
          Length = 385

 Score =  102 bits (253), Expect = 3e-20
 Identities = 49/80 (61%), Positives = 62/80 (77%)
 Frame = +1

Query: 76  RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
           ++  I+  QLE FL+ C  +Y   ++E G+ +GA+ A SIGEPGTQMTLKTFHFAGVASM
Sbjct: 103 QLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASM 162

Query: 256 NVTLGVPRIMEIINGASNIK 315
           N+TLGVPRI EIIN + NI+
Sbjct: 163 NITLGVPRIKEIINASKNIR 182

[191][TOP]
>UniRef100_Q8U0M5 DNA-directed RNA polymerase subunit A'' n=1 Tax=Pyrococcus furiosus
           RepID=RPOA2_PYRFU
          Length = 397

 Score =  101 bits (252), Expect = 4e-20
 Identities = 50/113 (44%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           +++ ++E  +D  +  Y    +E G P+G + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 39  LTKAEIEAIIDDVVKEYERALVEPGEPVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 98

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNINIARM--VKGRIEKTTLGQVAKS 420
           G+PRI+EI++   N  TP++T  L+ +   + A+   V  RIE TTL  +A+S
Sbjct: 99  GLPRIIEIVDARKNPSTPMMTVYLDEEHRYDRAKAEEVARRIEGTTLENLARS 151

[192][TOP]
>UniRef100_B6JYP8 DNA-directed RNA polymerase n=1 Tax=Schizosaccharomyces japonicus
            yFS275 RepID=B6JYP8_SCHJY
          Length = 1748

 Score =  101 bits (251), Expect = 5e-20
 Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            +R++  ++  G  +G + A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EI+N A N
Sbjct: 1054 ARFQQCQVNPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1113

Query: 310  IKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP +T  L  E   N+++A+ V+ +IE TTL  V  + ++          I  D   +
Sbjct: 1114 IKTPSLTIYLLPEIASNMDLAKNVQTQIEHTTLKTVTSATEIHYDPDPQNTVIDEDRDFV 1173

Query: 484  EEAYLNIDSNTVKESI---------LQTGKLKLKEKEIKI 576
             EA+  I    V+E++         L+  + K+ +K++ +
Sbjct: 1174 -EAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSM 1212

[193][TOP]
>UniRef100_Q4Y2E0 Putative uncharacterized protein (Fragment) n=1 Tax=Plasmodium
           chabaudi RepID=Q4Y2E0_PLACH
          Length = 176

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +1

Query: 226 TFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLG 405
           TFHFAGVASMNVTLGVPRI EIIN ++ I+TPI+   L   DN N A M+K ++EKT++ 
Sbjct: 1   TFHFAGVASMNVTLGVPRIKEIINASNVIQTPILNIPLRIKDNYNFALMMKSKLEKTSIR 60

Query: 406 QVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESIL-QTGKLKLKEKEIKI 576
            + + IK     +   + I  +E++I++ +LNI++ T+++ IL QT   K+K  +I I
Sbjct: 61  DICEYIKENYCPKGIFISIKFNEELIQKLFLNINAYTIRDVILKQTHISKIKINKIYI 118

[194][TOP]
>UniRef100_C6A1G1 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermococcus
           sibiricus MM 739 RepID=C6A1G1_THESM
          Length = 397

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + + ++E  +D  +  Y    +E G  +G + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 41  LKKAEIEAIIDEVVQEYEQALVEPGEAVGTVTAQSIGEPSTQMTLNTFHYAGVAEINVTL 100

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNINI--ARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TPI+T  L+ +   N   A  V  RIE TTL  +A+S+ +   +
Sbjct: 101 GLPRIIEIVDARKNPSTPIMTVHLDEEHRYNSEKALEVAKRIEGTTLESLARSMTLDILN 160

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVK 522
                 + +D + +E++ L ++    K
Sbjct: 161 ME--FVVDIDPERLEKSGLTMEKIQAK 185

[195][TOP]
>UniRef100_C5DXL0 DNA-directed RNA polymerase n=1 Tax=Zygosaccharomyces rouxii CBS 732
            RepID=C5DXL0_ZYGRC
          Length = 1744

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
 Frame = +1

Query: 151  IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
            +  G  +G + A SIGEP TQMTL TFHFAGVAS  VT GVPR+ EI+N A N+KTP +T
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLT 1117

Query: 331  AILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
            A LE D   +   A++++  IE TTL  V  + ++       +  I  DE+II+  +  +
Sbjct: 1118 AYLEPDYAADQEKAKLIRSVIEHTTLKSVTVASEIYYDPDPRSTAIPEDEEIIQLHFSLL 1177

Query: 505  DSNTVKESILQT 540
            D  T K    Q+
Sbjct: 1178 DDETEKSLAQQS 1189

[196][TOP]
>UniRef100_P11514 DNA-directed RNA polymerase subunit A'' n=1 Tax=Sulfolobus
           acidocaldarius RepID=RPOA2_SULAC
          Length = 393

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 61/194 (31%), Positives = 111/194 (57%), Gaps = 8/194 (4%)
 Frame = +1

Query: 10  KLTETITEDDPKHLKNLNNFIPRISGI--SRRQLEVFLDICLSRYRFKKIEAGTPIGAIG 183
           +L E   +   K  ++L   I  I+G+  +   ++  +D+ +  Y+   IE G  IG + 
Sbjct: 13  RLNEIKDKIPDKLHEDLRAAIMDINGVELTEEDIDRIIDLTIREYQQSLIEPGEAIGVVT 72

Query: 184 AHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL------ET 345
           A S+GEPGTQMTL+TFHFAG+  +NVTLG+PR++EI++      TP++T  L      + 
Sbjct: 73  AQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDARKVPSTPMMTIYLTDEYKTDK 132

Query: 346 DDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKE 525
           D  ++IAR    RIE T +  V  S+ V  ++ S  L    D++++++  ++I+      
Sbjct: 133 DKALDIAR----RIEYTRVENVVSSVSVDISNMSITL--QFDQEMLKDKGVSIEEIKKII 186

Query: 526 SILQTGKLKLKEKE 567
           + L+ G++++++ +
Sbjct: 187 TKLKLGEIRIEDND 200

[197][TOP]
>UniRef100_P09847 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Winter RepID=RPOA2_METTW
          Length = 449

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
 Frame = +1

Query: 40  PKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMT 219
           P+ ++ +   I R  G+S  +L+  +      Y    +EAG  +G + A S+GEPGTQMT
Sbjct: 90  PRLIEEIAEAIKR-HGLSDDELDELVRGVRRAYERAMVEAGEAVGTVAAQSVGEPGTQMT 148

Query: 220 LKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEK 393
           ++TFH+AGVA +NVTLG+PR++EI++    I TP ++   E D   +    R    +I K
Sbjct: 149 MRTFHYAGVAELNVTLGLPRLIEIVDARKKISTPTMSIYFEGDRKYDEEFVRKKANKICK 208

Query: 394 TTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVK 522
           +TL  V K+  +     S      LDE+ I E +L  D    K
Sbjct: 209 STLNDVLKNFSIQYADMSVE--AELDEEKIREKHLEYDDIIAK 249

[198][TOP]
>UniRef100_O27126 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanothermobacter
           thermautotrophicus str. Delta H RepID=RPOA2_METTH
          Length = 451

 Score = 99.4 bits (246), Expect = 2e-19
 Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 2/173 (1%)
 Frame = +1

Query: 10  KLTETITEDDPKHLKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAH 189
           KL E I E   KH             +S  +L+  +      Y   ++EAG  +G + A 
Sbjct: 91  KLIEDIAEVMKKH------------ELSDDELDELIRRVRRAYDRARVEAGEAVGTVAAQ 138

Query: 190 SIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNIN--I 363
           S+GEPGTQMT++TFH+AGVA +NVTLG+PR++EI++    I TP ++   E D   +   
Sbjct: 139 SVGEPGTQMTMRTFHYAGVAELNVTLGLPRLIEIVDARKKISTPTMSIYFEGDLRYDEEF 198

Query: 364 ARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVK 522
            R    +I K+TL  V K+  +     S  +   LDE+ I+E +L  D    K
Sbjct: 199 VRRKANKIGKSTLNDVLKNFSIQYADMS--VVAELDEEKIQEKHLEYDEILAK 249

[199][TOP]
>UniRef100_B7Z6H4 DNA-directed RNA polymerase n=1 Tax=Homo sapiens RepID=B7Z6H4_HUMAN
          Length = 1369

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 59/167 (35%), Positives = 93/167 (55%)
 Frame = +1

Query: 76   RISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASM 255
            ++  I+  Q+E FL+ C  +Y   ++E G+ +GA+                        M
Sbjct: 1002 QLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGAL---------------------CTQM 1040

Query: 256  NVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVA 435
            N+TLGVPRI EIIN +  I TPIITA L+ DD+ + AR+VKGRIEKT LG++++ I+ V 
Sbjct: 1041 NITLGVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVF 1100

Query: 436  TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                  + + L  + I    L +++ TV+ SI  T KL++K  ++ +
Sbjct: 1101 LPDDCFILVKLSLERIRLLRLEVNAETVRYSIC-TSKLRVKPGDVAV 1146

[200][TOP]
>UniRef100_Q6CBQ3 DNA-directed RNA polymerase n=1 Tax=Yarrowia lipolytica
            RepID=Q6CBQ3_YARLI
          Length = 1750

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 11/151 (7%)
 Frame = +1

Query: 151  IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
            +  G  +G I A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EI+N A NIKTP +T
Sbjct: 1062 VHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALT 1121

Query: 331  AILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
              LE     +I  A++V+  IE T+L  V  + ++          I  D   + +AY +I
Sbjct: 1122 VYLEPSVAADIEKAKVVQSAIEHTSLKNVTAATEIYYDPDPRTTVIEEDIDTV-DAYFSI 1180

Query: 505  DSNTVKESI---------LQTGKLKLKEKEI 570
               TV+ ++         L+  + K+ +K++
Sbjct: 1181 PDETVEATLDNQSPWLLRLELDRAKMLDKQL 1211

[201][TOP]
>UniRef100_P14247 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanococcus
           vannielii SB RepID=RPOA2_METVS
          Length = 386

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 2/141 (1%)
 Frame = +1

Query: 151 IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
           IE G  +G I A SIGEPGTQMT++TFH+AGVA +NVTLG+PR++EI++      TP ++
Sbjct: 54  IEPGEAVGVIAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPSTPTMS 113

Query: 331 AILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
             L  D   +   A +V   IE TT+  V++ I V   +    + I LD + +E   L +
Sbjct: 114 IYLRGDYKYDRESAAIVSKNIESTTVESVSEDISVDLVNE--CITIVLDVQQLESRQLTV 171

Query: 505 DSNTVKESILQTGKLKLKEKE 567
             N V E+I    KLK++E E
Sbjct: 172 --NNVVEAIKSKMKLKIEENE 190

[202][TOP]
>UniRef100_C7P942 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Methanocaldococcus
           fervens AG86 RepID=C7P942_METFA
          Length = 387

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 62/177 (35%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
 Frame = +1

Query: 34  DDPKHLKN-LNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGT 210
           D P+ LK+ L   + +   ++   +E  ++  ++ YR   +E    +G + A SIGEPGT
Sbjct: 14  DLPQSLKDELFEKLSKEKDLTDEMIEEIINEVVNAYRNAMVEPYEAVGIVAAQSIGEPGT 73

Query: 211 QMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILET--DDNINIARMVKGR 384
           QMT++TFH+AGVA +NVTLG+PR++EI++      TPI+T  L+    ++   A  +   
Sbjct: 74  QMTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTIYLKEGYKNDKEKAEKIAKE 133

Query: 385 IEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKL 555
           IE  TL  +A+SI +   ++S  + + LDE  + +  L ID   V E+I +  K+K+
Sbjct: 134 IESLTLENIAESISIDLWTQS--IKVELDENRLADRGLTIDD--VVEAIKKKVKVKI 186

[203][TOP]
>UniRef100_P36594 DNA-directed RNA polymerase II subunit rpb1 n=1
            Tax=Schizosaccharomyces pombe RepID=RPB1_SCHPO
          Length = 1752

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 11/160 (6%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            +R++   +  G  +G + A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EI+N A N
Sbjct: 1054 ARFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKN 1113

Query: 310  IKTPIITAILE--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP +T  L      N+++A+ V+ +IE TTL  V  + ++          I  D+  +
Sbjct: 1114 IKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFV 1173

Query: 484  EEAYLNIDSNTVKESI---------LQTGKLKLKEKEIKI 576
             EA+  I    V+E++         L+  + K+ +K++ +
Sbjct: 1174 -EAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSM 1212

[204][TOP]
>UniRef100_Q9C428 DNA-directed RNA polymerase (Fragment) n=1 Tax=Monoblepharis
            macrandra RepID=Q9C428_9FUNG
          Length = 1603

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR++  K+     +G I A SIGEP TQMTL TFHFAGV S NVTLGVPR+ EIIN A+N
Sbjct: 997  SRFKAAKVNPAEMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATN 1056

Query: 310  IKTPIITAILETDD-----NINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDE 474
            ++TP +   L+ +      ++  A+ ++ +IE TTLG++A   +V          +  D 
Sbjct: 1057 LRTPSLLVCLKANKDGRPLDLPQAKKIQAKIEYTTLGKLAVQSEVYYDPDLRNSVVEADR 1116

Query: 475  KIIEEAYLNIDSNTVKESILQTGKLKLK 558
              + +AY  I+     ++ L +  L+++
Sbjct: 1117 DWL-DAYFEIEDADALQARLSSWALRIE 1143

[205][TOP]
>UniRef100_Q12WS7 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanococcoides
           burtonii DSM 6242 RepID=Q12WS7_METBU
          Length = 386

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 54/160 (33%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
 Frame = +1

Query: 85  GISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
           G++++++E  ++  ++ Y +  +E    +G + A SIGEPGTQMT++TFH+AGVA +NVT
Sbjct: 33  GVTKKEMEEIIERVMADYNYACVEPCEAVGVVSAQSIGEPGTQMTMRTFHYAGVAEINVT 92

Query: 265 LGVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
           LG+PR++EI++      TP++T  L  E   + + AR V   IE T +  +A    V   
Sbjct: 93  LGLPRLIEIVDARKTPSTPMMTVALAKEHAADRDFARKVAWEIEATHIEHLA---DVTTD 149

Query: 439 SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLK 558
             +  L + L+EK++ +   +ID + + E + +  K+ +K
Sbjct: 150 LANMNLILDLNEKMLLQR--DIDVDAIAEKLAEGLKVNVK 187

[206][TOP]
>UniRef100_Q2N151 RNA polymerase III large subunit (Fragment) n=1 Tax=Suberites
           fuscus RepID=Q2N151_9METZ
          Length = 269

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 57/111 (51%), Positives = 72/111 (64%)
 Frame = +1

Query: 244 VASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSI 423
           VASMN+TLGVPRI EIIN +  I TPIITA L+ D +   AR+VKGRIEKT LG+VA+ I
Sbjct: 1   VASMNITLGVPRIKEIINASKAISTPIITAHLKVDSDPEHARVVKGRIEKTLLGEVARYI 60

Query: 424 KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
           + V       + I LD   I+   L ID+ TV+ +I    KLK+K K + I
Sbjct: 61  EEVYEPDGCYIKICLDSNRIKLLKLEIDTWTVQFAICSAPKLKIKPKHVSI 111

[207][TOP]
>UniRef100_C5E245 DNA-directed RNA polymerase n=1 Tax=Lachancea thermotolerans CBS 6340
            RepID=C5E245_LACTC
          Length = 1740

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++++  E  L    S++    +  G  +G + A SIGEP TQMTL TFHFAGVAS  VT 
Sbjct: 1037 LNKQTFEWVLSNVESQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096

Query: 268  GVPRIMEIINGASNIKTPIITAILETDD--NINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A N+KTP +T  L+ D   +   A++++  IE TTL  +  + ++    
Sbjct: 1097 GVPRLKEILNVAKNMKTPSLTVYLDKDHAADQEKAKLIRSAIEHTTLKSITVASEIYYDP 1156

Query: 442  RSAALFISLDEKIIEEAYLNIDSNT 516
               +  I  DE+II+  +  +D  T
Sbjct: 1157 DPRSTVIEEDEEIIQLHFSLMDEET 1181

[208][TOP]
>UniRef100_Q6FQS9 DNA-directed RNA polymerase n=1 Tax=Candida glabrata
            RepID=Q6FQS9_CANGA
          Length = 1715

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 54/126 (42%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
 Frame = +1

Query: 151  IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
            +  G  +G + A SIGEP TQMTL TFHFAGVAS  VT GVPR+ EI+N A N+KTP +T
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLT 1117

Query: 331  AILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
              LE + + +   A++V+  IE TTL  V  + ++       +  I  D++II+  +  +
Sbjct: 1118 VYLEPEYSADQEKAKLVRSAIEHTTLKSVTVASEIYYDPDPRSTVIPEDDEIIQLHFSLL 1177

Query: 505  DSNTVK 522
            D  T K
Sbjct: 1178 DDETEK 1183

[209][TOP]
>UniRef100_C8SAT4 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Ferroglobus
           placidus DSM 10642 RepID=C8SAT4_FERPL
          Length = 376

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 59/169 (34%), Positives = 94/169 (55%), Gaps = 9/169 (5%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + ++  +  ++ C   Y    +E G   G + A SIGEPGTQMT++TFH+AGVA +NVTL
Sbjct: 28  VDKKTAKKVIEKCYEVYMKNLMEPGEAAGIVAAQSIGEPGTQMTMRTFHYAGVAEINVTL 87

Query: 268 GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PR++EI++   N  TP++T  L  E   +   AR V  RIE TT+  VA    +    
Sbjct: 88  GLPRLIEILDVRKNPSTPMMTIRLLPEYAKDREKAREVANRIEATTVNDVA---DIATDL 144

Query: 442 RSAALFISLDEKIIEEAYL-------NIDSNTVKESILQTGKLKLKEKE 567
           R+  + ++ D K +E+  L        I+ +  +E   + GK+ ++ KE
Sbjct: 145 RNMRIIVTPDPKALEKKDLKFADVLKKIEKSVKEEVFEEDGKIIIQIKE 193

[210][TOP]
>UniRef100_P58192 DNA-directed RNA polymerase subunit A'' n=2 Tax=Sulfolobus
           solfataricus RepID=RPOA2_SULSO
          Length = 392

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 56/168 (33%), Positives = 96/168 (57%), Gaps = 8/168 (4%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           ++R +++   D+ +  Y    I  G  IG + A S+GEPGTQMTL+TFHFAG+  +NVTL
Sbjct: 40  VTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTL 99

Query: 268 GVPRIMEIINGASNIKTPIITAIL------ETDDNINIARMVKGRIEKTTLGQVAKSIKV 429
           G+PR++EI++      TP++T  L      + D  + +AR    ++E T +  V  S  +
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVAR----KLEYTKIENVVSSTSI 155

Query: 430 VATSRSAALFISLDEKIIEEAYLNIDSNTVKESI--LQTGKLKLKEKE 567
              S S  + + LD +++++  + +D   VK++I  L+ G   ++E E
Sbjct: 156 DIASMS--IILQLDNEMLKDKGVTVDD--VKKAIGRLKLGDFMIEESE 199

[211][TOP]
>UniRef100_Q5JE34 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermococcus
           kodakarensis RepID=RPOA2_PYRKO
          Length = 391

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + + +++  +D  +  Y+   IE G  +G + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 37  LKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 96

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNI--NIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TPI+T  L+ +     + A  V  RIE TTL  +A+   +   +
Sbjct: 97  GLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILN 156

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKE 567
                 + +D + +E+A L+++    K     TG  K  E E
Sbjct: 157 ME--YVVEIDPERLEKAGLDMEKVVRK----LTGSFKSAEFE 192

[212][TOP]
>UniRef100_O28390 DNA-directed RNA polymerase subunit A'' n=1 Tax=Archaeoglobus
           fulgidus RepID=RPOA2_ARCFU
          Length = 380

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
 Frame = +1

Query: 85  GISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
           G+ + + +  ++ C   Y    +E G   G + A SIGEPGTQMT++TFH+AGVA +NVT
Sbjct: 31  GLKKTEAKKVVEKCFQAYLANLMEPGEAAGIVAAQSIGEPGTQMTMRTFHYAGVAEINVT 90

Query: 265 LGVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVAT 438
           LG+PR++EI++   N  TP++T  L  E   +   AR V  RIE T +  VA    +   
Sbjct: 91  LGLPRLIEILDVRKNPSTPMMTIRLLPEYAKDREKAREVANRIEATYVKDVA---DIEVD 147

Query: 439 SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKE 567
            R   + +  DEK +E   L ++   +K  I +  K +++E E
Sbjct: 148 IRRFTIIVKPDEKALERKGLTVED--LKSKIGKALKTEVEETE 188

[213][TOP]
>UniRef100_Q9AXN0 DNA-directed RNA polymerase n=1 Tax=Glaucosphaera vacuolata
            RepID=Q9AXN0_9RHOD
          Length = 1746

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            +R+   K   G  IGA+   SIGEP TQMTL TFHFAGV++ NVTLGVPR+ EIIN A +
Sbjct: 1069 NRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKH 1128

Query: 310  IKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
             KTP +T  L  E   +   A+ V+  ++ TTL  V +S ++          I  D++++
Sbjct: 1129 CKTPSLTVYLRGEAARDAERAKQVQAELQHTTLNHVTQSTEIYYDPNPQDTVIEADQELV 1188

Query: 484  EEAY 495
               Y
Sbjct: 1189 RSYY 1192

[214][TOP]
>UniRef100_Q2N0X2 RNA polymerase III large subunit (Fragment) n=1 Tax=Monosiga
           brevicollis RepID=Q2N0X2_MONBE
          Length = 233

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 50/112 (44%), Positives = 70/112 (62%)
 Frame = +1

Query: 244 VASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIARMVKGRIEKTTLGQVAKSI 423
           VA+MNVTLGVPRI EIIN A NI TP+ITA LE D   + AR VK R+E  TLG+VA   
Sbjct: 1   VAAMNVTLGVPRIKEIINAAKNISTPVITAKLENDREESFARQVKARLETLTLGEVADHF 60

Query: 424 KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKIL 579
            VV       + + L+ K+I+  +L +  NT+ +SI  +   K+K + + ++
Sbjct: 61  DVVCNEDGGYVRVKLNLKVIQRKHLEVTMNTIIDSIAASRLTKIKHEHLSVM 112

[215][TOP]
>UniRef100_A1YIA7 DNA-directed RNA polymerase (Fragment) n=1 Tax=Pichia kudriavzevii
            RepID=A1YIA7_ISSOR
          Length = 1647

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 11/153 (7%)
 Frame = +1

Query: 151  IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
            +  G  +G + A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EI+N A N KTP +T
Sbjct: 982  VNPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALT 1041

Query: 331  AILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
              LE +   +I  A+ ++  IE T+L  V    ++          I  D   + EAY  I
Sbjct: 1042 VYLEEEYATDIEKAKSIQSAIEHTSLKNVTACTEIYYDPDPRTTVIEEDFDTV-EAYFAI 1100

Query: 505  DSNTVKESI---------LQTGKLKLKEKEIKI 576
                V+E++         L+  + K+ +K++ +
Sbjct: 1101 PDEKVEENLHKQSPWLLRLELDRAKMLDKQLSM 1133

[216][TOP]
>UniRef100_A2BN35 DNA-directed RNA polymerase subunit A'' n=1 Tax=Hyperthermus
           butylicus DSM 5456 RepID=A2BN35_HYPBU
          Length = 424

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
 Frame = +1

Query: 85  GISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
           G++  + +  +   L  Y + K+E G P+G + A SIGEPGTQMTL+TFH+AG+   NVT
Sbjct: 49  GLTPEEAKKIIVNVLYEYEYSKVEPGEPVGTVAAQSIGEPGTQMTLRTFHYAGIREFNVT 108

Query: 265 LGVPRIMEIINGASNIKTPIITAILETDDNI--NIARMVKGRIEKTTLGQVAKSIKVVAT 438
           LG+PR +E+++      TPI+   L+ +     N A+ V  RIE T +  VA  + +   
Sbjct: 109 LGLPRFIELVDARREPSTPIMHIYLDEEHRYDENKAKEVARRIEFTRVINVASEVDIDLV 168

Query: 439 SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLK 552
             +  + I LD  ++E+  + ++        L+ GK++
Sbjct: 169 --NMRMVIKLDPVMLEDKGVTVEQVKKALERLKLGKVE 204

[217][TOP]
>UniRef100_Q9V113 DNA-directed RNA polymerase subunit A'' n=1 Tax=Pyrococcus abyssi
           RepID=RPOA2_PYRAB
          Length = 397

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           +++ ++E  +D  +  Y    +E G  +G + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 39  LTKAEVETIIDEVVKEYERALVEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 98

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TP++T  L+ +   +   A  V  RIE TTL  +A++  +   +
Sbjct: 99  GLPRIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEEVARRIEGTTLENLARTTTLDLIN 158

Query: 442 RSAALFISLDEKIIEEAYLNID 507
                 + +D + +E++ L ++
Sbjct: 159 ME--FIVEIDPERLEKSGLTME 178

[218][TOP]
>UniRef100_P29158 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermococcus celer
           RepID=RPOA2_THECE
          Length = 393

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 53/142 (37%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + + +++  +D  +  Y+   IE G  IG + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 37  LKKAEVQAIIDETVKEYQKALIEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 96

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TPI+T  L+ +   +   A  V  RIE T+L  +A+   +    
Sbjct: 97  GLPRIIEIVDARKNPSTPIMTVYLDEEHRYDREKALEVARRIEGTSLENLARETTI--DI 154

Query: 442 RSAALFISLDEKIIEEAYLNID 507
            +    + +D + +E+A L+++
Sbjct: 155 LNFEFIVEIDPERLEKAGLDME 176

[219][TOP]
>UniRef100_O93777 DNA-directed RNA polymerase subunit A'' n=1 Tax=Pyrococcus
           horikoshii RepID=RPOA2_PYRHO
          Length = 397

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 52/142 (36%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           +++ ++E  +D  +  Y    IE G  +G + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 39  LTKVEVETIIDEVIKEYEKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 98

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PRI+EI++   N  TP++T  L+ +   +   A  V  RIE TTL  +A++  +   +
Sbjct: 99  GLPRIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEEVARRIEGTTLENLARTTTLDLIN 158

Query: 442 RSAALFISLDEKIIEEAYLNID 507
                 + +D + +E++ L ++
Sbjct: 159 ME--FIVEVDPERLEKSGLTME 178

[220][TOP]
>UniRef100_Q75A34 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Eremothecium
            gossypii RepID=RPB1_ASHGO
          Length = 1745

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 55/145 (37%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++++  E  L+   +++    +  G  +G + A SIGEP TQMTL TFHFAGVAS  VT 
Sbjct: 1037 LTKQTFEWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096

Query: 268  GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A N+KTP +T  LE     +   A++++  IE TTL  V  + ++    
Sbjct: 1097 GVPRLKEILNVAKNMKTPSLTVYLEESYATDQEKAKLIRSAIEHTTLKSVPVASEIYYDP 1156

Query: 442  RSAALFISLDEKIIEEAYLNIDSNT 516
              ++  I  DE+II+  +  +D  T
Sbjct: 1157 DPSSTVIEEDEEIIQLHFSLMDEET 1181

[221][TOP]
>UniRef100_UPI0001A48A43 DNA-DIRECTED RNA POLYMERASE RPO1C SUBUNIT n=1 Tax=Sulfolobus
           shibatae RepID=UPI0001A48A43
          Length = 395

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           ++R +++   D+ +  Y    I  G  IG + A S+GEPGTQMTL+TFHFAG+  +NVTL
Sbjct: 43  VTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTL 102

Query: 268 GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PR++EI++      TP++T  L  E   +   A  V  ++E T +  V  S  +   S
Sbjct: 103 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIAS 162

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESI--LQTGKLKLKEKE 567
            S  + + LD +++++  + +D   VK++I  L+ G+  + E E
Sbjct: 163 MS--IILQLDNEMLKDKGVTVDD--VKKAINRLKLGEFVIDESE 202

[222][TOP]
>UniRef100_B8BQ02 DNA-directed RNA polymerase n=1 Tax=Thalassiosira pseudonana CCMP1335
            RepID=B8BQ02_THAPS
          Length = 1627

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            +R+   K+  G   G + A SIGEP TQMTL TFH+AGV++ NVTLGVPR+ EIIN A  
Sbjct: 1070 ARFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKT 1129

Query: 310  IKTPIITAILE--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            +KTP +T  L+     + ++A++V   IE T L  + K  ++          ++ D + +
Sbjct: 1130 VKTPGLTIYLQNHVSGDADVAKLVHSMIEYTVLTDLTKLTEIYYDPDPVNTIVAKDREFV 1189

Query: 484  EEAY 495
            +E Y
Sbjct: 1190 KEYY 1193

[223][TOP]
>UniRef100_A7TTU2 DNA-directed RNA polymerase (Fragment) n=1 Tax=Vanderwaltozyma
            polyspora DSM 70294 RepID=A7TTU2_VANPO
          Length = 1311

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
 Frame = +1

Query: 151  IEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIIT 330
            +  G  +G + A SIGEP TQMTL TFHFAGVAS  VT GVPR+ EI+N A N+KTP  T
Sbjct: 740  VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSST 799

Query: 331  AILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNI 504
              LE +  I+   A+ ++  IE TTL  V  + ++       +  I  DE+II+  +  +
Sbjct: 800  VYLEPEYAIDQEKAKFIRSAIEHTTLKSVTVASEIYYDPDPRSTVIPDDEEIIQLHFSLL 859

Query: 505  DSNTVK 522
            D  T K
Sbjct: 860  DDETEK 865

[224][TOP]
>UniRef100_Q464Y8 DNA-directed RNA polymerase, subunit A' n=1 Tax=Methanosarcina
           barkeri str. Fusaro RepID=Q464Y8_METBF
          Length = 426

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
 Frame = +1

Query: 82  SGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNV 261
           +G+S++++E  ++  +  YR   IE     G + A SIGEPGTQMT++TFH+AGVA +NV
Sbjct: 32  AGVSKKEMEEIIEQVMEEYRSSCIEPCDAAGVVAAQSIGEPGTQMTMRTFHYAGVAEINV 91

Query: 262 TLGVPRIMEIINGASNIKTPIITAILETDDNINIA------RMVKGRIEKTTLGQVAKSI 423
           TLG+PR++EI++      TP++T  L  ++  + A      R +   IE T +  +A   
Sbjct: 92  TLGLPRLIEIVDARKIPSTPMMTIALSKENPEDYAYDREKTRALAWEIEATKIDHIA--- 148

Query: 424 KVVATSRSAALFISLDEKIIEEAYLNIDSNTVKE 525
            V        L I L EK +E   + ID   VKE
Sbjct: 149 DVTTDLSQMKLIIDLHEKAMEGRNITIDQ--VKE 180

[225][TOP]
>UniRef100_B8YB54 RNA polymerase subunit 1C n=1 Tax=Sulfolobus shibatae B12
           RepID=B8YB54_SULSH
          Length = 395

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           ++R +++   D+ +  Y    I  G  IG + A S+GEPGTQMTL+TFHFAG+  +NVTL
Sbjct: 43  VTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTL 102

Query: 268 GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PR++EI++      TP++T  L  E   +   A  V  ++E T +  V  S  +   S
Sbjct: 103 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIAS 162

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESI--LQTGKLKLKEKE 567
            S  + + LD +++++  + +D   VK++I  L+ G+  + E E
Sbjct: 163 MS--IILQLDNEMLKDKGVTVDD--VKKAINRLKLGEFVIDESE 202

[226][TOP]
>UniRef100_C3MZM9 DNA-directed RNA polymerase subunit A'' n=6 Tax=Sulfolobus
           islandicus RepID=RPOA2_SULIA
          Length = 392

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 56/164 (34%), Positives = 94/164 (57%), Gaps = 4/164 (2%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           ++R +++   D+ +  Y    I  G  IG + A S+GEPGTQMTL+TFHFAG+  +NVTL
Sbjct: 40  VTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTL 99

Query: 268 GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PR++EI++      TP++T  L  E   +   A  V  ++E T +  V  S  +   S
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIAS 159

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESI--LQTGKLKLKEKE 567
            S  + + LD +++++  + +D   VK++I  L+ G+  + E E
Sbjct: 160 MS--IILQLDNEMLKDKGVTVDD--VKKAINRLKLGEFVIDESE 199

[227][TOP]
>UniRef100_A9U396 DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp.
            patens RepID=A9U396_PHYPA
          Length = 1742

 Score = 95.5 bits (236), Expect = 3e-18
 Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R   E  +    +R+    +  G  IG + A SIGEP TQMTL TFHFAGV++ NVTL
Sbjct: 1059 LTREAFEWVIGEVETRFLMSLVAPGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTL 1118

Query: 268  GVPRIMEIINGASNIKTPIITAILETDDN--INIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EIIN A  IKTP +T  L+   N     A+ V+  +E TTL  V ++ ++    
Sbjct: 1119 GVPRLREIINVAKKIKTPSLTVYLKPGVNKEKERAKNVQCALEYTTLRSVTQATEIWYDP 1178

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVKESI 531
               +  I  D + ++  Y   D +   E I
Sbjct: 1179 EPMSTLIEEDMEFVKSYYEMPDEDVAPEKI 1208

[228][TOP]
>UniRef100_B6YT17 DNA-directed RNA polymerase subunit A'' n=1 Tax=Thermococcus
           onnurineus NA1 RepID=RPOA2_THEON
          Length = 391

 Score = 95.5 bits (236), Expect = 3e-18
 Identities = 52/140 (37%), Positives = 84/140 (60%), Gaps = 2/140 (1%)
 Frame = +1

Query: 94  RRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGV 273
           + ++E  ++  +  Y+   +E G  IG + A SIGEP TQMTL TFH+AGVA +NVTLG+
Sbjct: 39  KAEVEAIIEETVKEYQNSLVEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGL 98

Query: 274 PRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVATSRS 447
           PRI+EI++   N  TPI+T  L+     +   A  V  RIE TTL  +A+ + +     +
Sbjct: 99  PRIIEIVDARKNPSTPIMTVYLDEKHRYDREKALEVARRIEGTTLENLAREMSI--DILN 156

Query: 448 AALFISLDEKIIEEAYLNID 507
               + +D + +E++ L+++
Sbjct: 157 FEFIVEIDPERLEKSGLDME 176

[229][TOP]
>UniRef100_B6H9U6 DNA-directed RNA polymerase n=1 Tax=Penicillium chrysogenum Wisconsin
            54-1255 RepID=B6H9U6_PENCW
          Length = 1733

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR+       G  +G + A SIGEP TQMTL TFHFAGV+S NVTLGVPR+ EI+N A+N
Sbjct: 1067 SRFARAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1126

Query: 310  IKTPIITAILE---TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKI 480
            IKTP +T   E   T D    A++++  +E T+L  V +S ++       +  I  D  +
Sbjct: 1127 IKTPSMTVYQEGVKTHDKEG-AKLLRSLVEHTSLRSVTESTEIYYDPDIQSTVIENDRDM 1185

Query: 481  IEEAYLNIDSN 513
            +E  ++  + N
Sbjct: 1186 VESYFIIPEDN 1196

[230][TOP]
>UniRef100_B5IW00 Putative uncharacterized protein (Fragment) n=1 Tax=Thermococcus
           barophilus MP RepID=B5IW00_9EURY
          Length = 169

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 49/114 (42%), Positives = 73/114 (64%), Gaps = 2/114 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           + ++++E  ++  +  Y    +E G  IG + A SIGEP TQMTL TFH+AGVA +NVTL
Sbjct: 39  LKKKEVEAIIEEVVKEYENAVVEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTL 98

Query: 268 GVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLGQVAKSI 423
           G+PRI+EI++   N  TPI+T  L+ +   +   A  V  +IE TTL  +A+S+
Sbjct: 99  GLPRIIEIVDARKNPSTPIMTVYLDEEHRYDREKALEVARKIEGTTLINLAQSM 152

[231][TOP]
>UniRef100_Q9HGZ5 DNA-directed RNA polymerase n=2 Tax=Aspergillus RepID=Q9HGZ5_ASPOR
          Length = 1748

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 3/140 (2%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR+      AG  +G + A SIGEP TQMTL TFHFAGV+S NVTLGVPR+ EI+N A+N
Sbjct: 1071 SRFAKANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1130

Query: 310  IKTPIITAILE---TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKI 480
            IKTP +T   E   T D    A+ ++  +E T+L  V ++ ++       +  I  D  +
Sbjct: 1131 IKTPSMTVYQEPGRTHDKEG-AKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDM 1189

Query: 481  IEEAYLNIDSNTVKESILQT 540
            + E+Y  I  +   +S  Q+
Sbjct: 1190 V-ESYFIIPEDVTDDSSRQS 1208

[232][TOP]
>UniRef100_Q6CL79 DNA-directed RNA polymerase n=1 Tax=Kluyveromyces lactis
            RepID=Q6CL79_KLULA
          Length = 1720

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++R+  +  L+   +++    +  G  +G + A SIGEP TQMTL TFHFAGVAS  VT 
Sbjct: 1037 LNRQTFDWVLNNIEAQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTS 1096

Query: 268  GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
            GVPR+ EI+N A N+KTP +T  L+ +   +   A+ ++  IE TTL  V  + ++    
Sbjct: 1097 GVPRLKEILNVAKNMKTPSLTVYLDPEYAADQEKAKEIRSAIEHTTLKSVTVASEIYYDP 1156

Query: 442  RSAALFISLDEKIIEEAYLNIDSNTVK 522
               +  I  DE+II+  +  +D  T K
Sbjct: 1157 DPRSTVIEDDEEIIQLHFSLMDEETEK 1183

[233][TOP]
>UniRef100_Q0D054 DNA-directed RNA polymerase n=1 Tax=Aspergillus terreus NIH2624
            RepID=Q0D054_ASPTN
          Length = 1742

 Score = 94.4 bits (233), Expect = 6e-18
 Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
 Frame = +1

Query: 139  RFKKIEA--GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNI 312
            RF K  A  G  +G + A SIGEP TQMTL TFHFAGV+S NVTLGVPR+ EI+N A+NI
Sbjct: 1073 RFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNI 1132

Query: 313  KTPIITAILE--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIE 486
            KTP +T   E  T  +   A+ ++  +E T+L  V ++ ++          I  D  ++ 
Sbjct: 1133 KTPSMTVYQEPYTCHDKESAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMV- 1191

Query: 487  EAYLNIDSNTVKESILQT 540
            E+Y  I  +   +S  Q+
Sbjct: 1192 ESYFIIPEDVTDDSTRQS 1209

[234][TOP]
>UniRef100_C1MI48 DNA-directed RNA polymerase n=1 Tax=Micromonas pusilla CCMP1545
            RepID=C1MI48_9CHLO
          Length = 1694

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR++      G  IG + A SIGEP TQMTL TFHFAGV++ NVTLGVPR+ EIIN A  
Sbjct: 1055 SRFKMALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKK 1114

Query: 310  IKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP +T  L  D   +  +A+ V+  +E TTL  VA   ++          I  D++ +
Sbjct: 1115 IKTPSLTVALRKDLAGDRAMAKNVQASLEYTTLHSVAAVSEIYYDPDPTDTVIEEDKEFV 1174

Query: 484  EEAY 495
               Y
Sbjct: 1175 RAYY 1178

[235][TOP]
>UniRef100_B8D6G8 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D6G8_DESK1
          Length = 406

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 3/193 (1%)
 Frame = +1

Query: 10  KLTETITEDDPKHLKN-LNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGA 186
           +L E +++   + ++N L N   +I  I+R  +E F++  + RY    IE G  +G I A
Sbjct: 16  RLKENVSQQVYEEVRNKLLNIAGKIV-ITRETVERFIEHIIERYHSSLIEPGEAVGTIAA 74

Query: 187 HSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL--ETDDNIN 360
            S+GEP TQMTL+ FH+AGV   NVTLG+PR++EI++     +TPI+   L  E   +  
Sbjct: 75  QSLGEPSTQMTLRVFHYAGVREYNVTLGLPRLIEIVDARKKPETPIMEIYLVDEYRRSEE 134

Query: 361 IARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQT 540
            AR +  +IE T L  + + + +          + LD +++E+  L+++    K   L  
Sbjct: 135 KAREIARKIESTYLENITRELDIDLI--EGVTRVRLDPEMLEDKGLSVEVIIKKLKELDV 192

Query: 541 GKLKLKEKEIKIL 579
           G++   +   +++
Sbjct: 193 GEVSRGDDPYEVI 205

[236][TOP]
>UniRef100_A3DMP5 DNA-directed RNA polymerase, subunit A' n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DMP5_STAMF
          Length = 421

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
 Frame = +1

Query: 85  GISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVT 264
           G+   +++  +   + RY   + E G P+G + A SIGEP TQMTL+TFH+AGV   NVT
Sbjct: 43  GLYIEEVKAIIKETIDRYMRSQAEPGEPVGTVAAQSIGEPSTQMTLRTFHYAGVREFNVT 102

Query: 265 LGVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLGQVAKSIKVVAT 438
           LG+PR++EI++      TPI+   L+ +   +   A+ V   IE TT+  ++K I V   
Sbjct: 103 LGLPRLIEIVDARKKPGTPIMEIPLDEEHKYDEEKAKKVARMIESTTIENISKEINVDPY 162

Query: 439 SRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKL 549
             +    I LD +++ +  +++D        L+ GK+
Sbjct: 163 EGAT---IVLDSEMLSDKGISVDEVVKVLEKLKLGKV 196

[237][TOP]
>UniRef100_P35084 DNA-directed RNA polymerase II subunit rpb1 n=1 Tax=Dictyostelium
            discoideum RepID=RPB1_DICDI
          Length = 1727

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 54/135 (40%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
 Frame = +1

Query: 106  EVFLDIC---LSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVP 276
            + FL +C    S++       G  +GA+ A SIGEP TQMTL TFH+AGV+S NVTLGVP
Sbjct: 1059 KAFLWVCGEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVP 1118

Query: 277  RIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSA 450
            R+ EIIN A  +KTP +T  L+     +++ A++VK ++E TTL  V  + ++       
Sbjct: 1119 RLKEIINIAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQ 1178

Query: 451  ALFISLDEKIIEEAY 495
               IS D + +   +
Sbjct: 1179 NTIISEDAEFVNSYF 1193

[238][TOP]
>UniRef100_O77375 DNA-directed RNA polymerase n=1 Tax=Plasmodium falciparum 3D7
            RepID=O77375_PLAF7
          Length = 2457

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
 Frame = +1

Query: 160  GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL 339
            G  +GA+ A SIGEP TQMTL TFHFAGV S NVTLGVPR+ E+IN   N+KTP  T  L
Sbjct: 1399 GECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTTIYL 1458

Query: 340  E--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSN 513
            +    ++   A+ +  ++E TTL Q+    +++    +    +  D+  + E Y   D +
Sbjct: 1459 DDMVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNTTTTILEEDKSWVNEFYEFPDED 1518

Query: 514  TVKESI------LQTGKLKLKEKEI 570
              + S+      +Q   + + EK++
Sbjct: 1519 DTQYSLGEWVLRIQLTNIHVNEKKL 1543

[239][TOP]
>UniRef100_A1RWW4 DNA-directed RNA polymerase, subunit A' n=1 Tax=Thermofilum pendens
           Hrk 5 RepID=A1RWW4_THEPD
          Length = 403

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 2/167 (1%)
 Frame = +1

Query: 82  SGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNV 261
           +G+SR +    ++  L RY    +  G  +G + A SIGEP TQMTL+TFHFAGV  +NV
Sbjct: 36  AGLSRSEALSVINEALRRYLSSLVSPGEAVGMVAAQSIGEPATQMTLRTFHFAGVRELNV 95

Query: 262 TLGVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVA 435
           TLG+PR++EI++      TPI+   LE +   +++ A  +   IE TT+  +  SI +  
Sbjct: 96  TLGLPRLIEIVDLRREPSTPIMEVYLEPEHAKDLDFALKIAREIELTTMENLCSSITI-- 153

Query: 436 TSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEKEIKI 576
                A+ + LD  ++E   + +D     + I    KLK K+ +I++
Sbjct: 154 DYFEFAIVMELDPDMMENRGVTMD-----DVINALEKLKGKKGKIEV 195

[240][TOP]
>UniRef100_A8TEB9 DNA-directed RNA polymerase, subunit A'' n=1 Tax=Methanococcus
           voltae A3 RepID=A8TEB9_METVO
          Length = 387

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 59/172 (34%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
 Frame = +1

Query: 52  KNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTF 231
           +NL N I + +  S   ++  ++     Y    +E G  +G + A SIGEPGTQMT++TF
Sbjct: 21  QNLLNKILKENIESEEMIDEIVNETQIAYERTLVEPGEAVGVVAAQSIGEPGTQMTMRTF 80

Query: 232 HFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNIN--IARMVKGRIEKTTLG 405
           H+AGVA +NVTLG+PR++EI++      TP +T  L  D   +   A+ V   IE TT+ 
Sbjct: 81  HYAGVAELNVTLGLPRMIEIVDARKEPSTPTMTINLLEDYKYDREKAQQVAKNIESTTVE 140

Query: 406 QVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKE 561
            VA +I V       ++ ++ ++  +E+  L+++   V  SI    KLK+ +
Sbjct: 141 SVADNISVNLVEECISIILNAEK--LEKRNLSVED--VVNSIKSKMKLKIDQ 188

[241][TOP]
>UniRef100_P14248 DNA-directed RNA polymerase II subunit RPB1 n=1 Tax=Plasmodium
            falciparum CDC/Honduras RepID=RPB1_PLAFD
          Length = 2452

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 8/145 (5%)
 Frame = +1

Query: 160  GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL 339
            G  +GA+ A SIGEP TQMTL TFHFAGV S NVTLGVPR+ E+IN   N+KTP  T  L
Sbjct: 1402 GECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTTIYL 1461

Query: 340  E--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSN 513
            +    ++   A+ +  ++E TTL Q+    +++    +    +  D+  + E Y   D +
Sbjct: 1462 DDMVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNTTTTILEEDKSWVNEFYEFPDED 1521

Query: 514  TVKESI------LQTGKLKLKEKEI 570
              + S+      +Q   + + EK++
Sbjct: 1522 DTQYSLGEWVLRIQLTNIHVNEKKL 1546

[242][TOP]
>UniRef100_C1EA31 DNA-directed RNA polymerase n=1 Tax=Micromonas sp. RCC299
            RepID=C1EA31_9CHLO
          Length = 1720

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR++      G  IG + A SIGEP TQMTL TFHFAGV++ NVTLGVPR+ E+IN A  
Sbjct: 1053 SRFKVALAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKK 1112

Query: 310  IKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP +T  L  D   +  +A+ V+  +E TTL  VA + +V          I  D++ +
Sbjct: 1113 IKTPSLTVALRKDLAGDRAMAKNVQSILEYTTLHSVAAASEVWYDPDPTDTVIEEDKEFV 1172

Query: 484  EEAY 495
               Y
Sbjct: 1173 RSYY 1176

[243][TOP]
>UniRef100_A8IRZ2 DNA-directed RNA polymerase n=1 Tax=Chlamydomonas reinhardtii
            RepID=A8IRZ2_CHLRE
          Length = 1789

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            ++ + L+  L    +R+   +  AG  +G + A S+GEP TQMTL TFHFAGV++ NVTL
Sbjct: 1053 LNNKALDWLLGELETRFFLAQAHAGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTL 1112

Query: 268  GVPRIMEIINGASNIKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKV---- 429
            GVPR+ E+IN A NIKTP +T  L     +N + A+ ++ ++E T    V K+ ++    
Sbjct: 1113 GVPRLTELINLAKNIKTPTLTVHLLPGLRENKDAAKEIQSKLEYTCFKNVVKTTEIWYDP 1172

Query: 430  VATSRSAALFISLDEKIIEEAY 495
            V  + +    I  DE+++   Y
Sbjct: 1173 VDPANANQTVIGEDEEMLSSYY 1194

[244][TOP]
>UniRef100_B3L428 DNA-directed RNA polymerase n=1 Tax=Plasmodium knowlesi strain H
            RepID=B3L428_PLAKH
          Length = 2353

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 8/145 (5%)
 Frame = +1

Query: 160  GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL 339
            G  +GA+ A SIGEP TQMTL TFHFAGV S NVTLGVPR+ E+IN   N+KTP  T  L
Sbjct: 1320 GECVGALAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINIVKNVKTPSTTIYL 1379

Query: 340  E--TDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSN 513
            +    ++   A+ +  ++E TTL Q+    +++    + +  +  D+  ++E Y   D +
Sbjct: 1380 DDIVSNDQQKAKDILTKLEYTTLKQLTSHAQIIYDPNTTSTILEEDKTWVDEFYEFPDED 1439

Query: 514  TVKESI------LQTGKLKLKEKEI 570
              + ++      +Q   + + EK++
Sbjct: 1440 DTQYTLGEWVLRIQLTNIHVNEKKL 1464

[245][TOP]
>UniRef100_Q4P7Q0 DNA-directed RNA polymerase n=1 Tax=Ustilago maydis
            RepID=Q4P7Q0_USTMA
          Length = 1774

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 54/126 (42%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
 Frame = +1

Query: 160  GTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAIL 339
            G   G + A SIGEP TQMTL TFH+AGV+S NVTLGVPR+ EIIN A NIKTP +T  L
Sbjct: 1073 GEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYL 1132

Query: 340  --ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNIDSN 513
              +   +   A++++  +  TTL  V  +++V      +A  I  D+  + EA+  I   
Sbjct: 1133 TEQYSQSQESAKVIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFV-EAFFAIPDE 1191

Query: 514  TVKESI 531
             V+ S+
Sbjct: 1192 EVEASL 1197

[246][TOP]
>UniRef100_B2W4S0 DNA-directed RNA polymerase n=1 Tax=Pyrenophora tritici-repentis
            Pt-1C-BFP RepID=B2W4S0_PYRTR
          Length = 1742

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 1/148 (0%)
 Frame = +1

Query: 88   ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
            +++  L+  L     R+    +  G  +G + A SIGEP TQMTL TFHFAGV+S NVTL
Sbjct: 1051 LNKEALKYILGELEDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTL 1110

Query: 268  GVPRIMEIINGASNIKTP-IITAILETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSR 444
            GVPR+ EI+N A+NIKTP ++   +    +   A+ ++  IE TTL  + +++++     
Sbjct: 1111 GVPRLKEILNVAANIKTPSMLVRQINKKADQGDAKKLRSTIELTTLRSLTQAVELYYDPD 1170

Query: 445  SAALFISLDEKIIEEAYLNIDSNTVKES 528
              +  +  D+ ++E  ++  + + V ES
Sbjct: 1171 IQSTRVEDDQDMVESYFILPEEDEVIES 1198

[247][TOP]
>UniRef100_A3CS85 DNA-directed RNA polymerase, subunit A' n=1 Tax=Methanoculleus
           marisnigri JR1 RepID=A3CS85_METMJ
          Length = 390

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 54/161 (33%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           ++  + E  L++  S Y+  +IE    +G + A SIGEPGTQMT++TFH+AGVA +NVTL
Sbjct: 31  VTEEEFEQILEMVFSEYQKSRIEPCEAVGVVAAQSIGEPGTQMTMRTFHYAGVAEINVTL 90

Query: 268 GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           G+PR++EI++      TP +   L  D   N + AR V  +IE   L +      +    
Sbjct: 91  GLPRLIEIMDARREPSTPTMAVHLLDDWAFNRDRAREVSWQIEAAPLHEFG---DITIDM 147

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESILQTGKLKLKEK 564
            +  + + L++ + +   ++ID       IL+ G  K++EK
Sbjct: 148 ENMQVLVMLNKAVCDRRKISID------EILEAGPRKMREK 182

[248][TOP]
>UniRef100_Q8PUR2 DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanosarcina
           mazei RepID=RPOA2_METMA
          Length = 408

 Score = 93.2 bits (230), Expect = 1e-17
 Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 6/159 (3%)
 Frame = +1

Query: 49  LKNLNNFIPRISGISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKT 228
           LK L + + + +G+S++++E  ++  +  Y    IE     G + A SIGEPGTQMT++T
Sbjct: 23  LKTLRDDVIK-AGVSKKEMEEIIERVMEEYTVSCIEPCDAAGVVAAQSIGEPGTQMTMRT 81

Query: 229 FHFAGVASMNVTLGVPRIMEIINGASNIKTPIITAILETDDNINIA------RMVKGRIE 390
           FH+AGVA +NVTLG+PR++EI++      TP++T  L  +   + A      R +   IE
Sbjct: 82  FHYAGVAEINVTLGLPRLIEIVDARKIPSTPMMTIALSKEHPEDYAYDREKTRALAWEIE 141

Query: 391 KTTLGQVAKSIKVVATSRSAALFISLDEKIIEEAYLNID 507
            T +  +A    V        L I L EK +E   + ID
Sbjct: 142 ATKIDHIA---DVTTDLSQMKLIIDLHEKAMEGRNITID 177

[249][TOP]
>UniRef100_UPI0000E12351 Os05g0151000 n=1 Tax=Oryza sativa Japonica Group RepID=UPI0000E12351
          Length = 2085

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
 Frame = +1

Query: 130  SRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIMEIINGASN 309
            SR+    +  G  IG + A SIGEP TQMTL TFH+AGV++ NVTLGVPR+ EIIN A N
Sbjct: 1071 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKN 1130

Query: 310  IKTPIITAIL--ETDDNINIARMVKGRIEKTTLGQVAKSIKVVATSRSAALFISLDEKII 483
            IKTP ++  L  E +    +A+ V+  +E TTL  V  + ++          I  D + +
Sbjct: 1131 IKTPSLSVHLKPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFV 1190

Query: 484  EEAY 495
            +  Y
Sbjct: 1191 QSYY 1194

[250][TOP]
>UniRef100_Q99368 DNA-directed RNA polymerase (Fragment) n=1 Tax=Glycine max
           RepID=Q99368_SOYBN
          Length = 977

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
 Frame = +1

Query: 88  ISRRQLEVFLDICLSRYRFKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTL 267
           +SR   E  +    SR+    +  G  IG + A SIGEP TQMTL TFHFAGV++ NVTL
Sbjct: 248 LSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTL 307

Query: 268 GVPRIMEIINGASNIKTPIITAILETD--DNINIARMVKGRIEKTTLGQVAKSIKVVATS 441
           GVPR+ E+IN A +IKTP ++  L+ D       A+ V+  +E TTL  V ++ +V    
Sbjct: 308 GVPRLRELINVAKSIKTPSLSVYLKPDAGKTKERAKTVQCALEYTTLRSVTQATEVWYDP 367

Query: 442 RSAALFISLDEKIIEEAYLNIDSNTVKESI 531
              +  I  D   +   Y   D     E I
Sbjct: 368 DPMSTIIEEDVDFVMSYYEMPDEEVALEKI 397