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[1][TOP]
>UniRef100_B9I6T5 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6T5_POPTR
Length = 499
Score = 181 bits (460), Expect = 3e-44
Identities = 86/110 (78%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T+H+++AD + EN PW GVDEWALKEEVNKLI+ L EREREI+RLY+
Sbjct: 390 EAFPSLNGLPGETHHSYIADNRLENNPWHGVDEWALKEEVNKLIDSALQEREREIIRLYH 449
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLDK+CLTWE+ISKR+GLSRERVRQVGLVALEKLKHAARK +LEAML +H
Sbjct: 450 GLDKECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKGKLEAMLVKH 499
[2][TOP]
>UniRef100_B9SDF8 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9SDF8_RICCO
Length = 508
Score = 181 bits (459), Expect = 3e-44
Identities = 86/110 (78%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T+H+++AD EN PW GVD+WALK+EVNKLIN+TL ERE+EI+RLYY
Sbjct: 399 EAFPSLNGLPGETHHSYIADNCLENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYY 458
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLD + LTWE+ISKRIGLSRERVRQVGLVALEKLKHAARKK+LEAML +H
Sbjct: 459 GLDNESLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
[3][TOP]
>UniRef100_B9IPY1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPY1_POPTR
Length = 509
Score = 180 bits (457), Expect = 6e-44
Identities = 84/110 (76%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T+H+++AD + EN PW GVDEWALKEEVNKLI+ TL ERE+EI+RLY+
Sbjct: 400 EAFPSLNGLPGETHHSYIADNRPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYH 459
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLD++CLTWE+ISKR+GLSRERVRQVGLVALEKLKHAARK+ EAML +H
Sbjct: 460 GLDQECLTWEDISKRMGLSRERVRQVGLVALEKLKHAARKRNTEAMLVKH 509
[4][TOP]
>UniRef100_Q9SLX3 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX3_TOBAC
Length = 502
Score = 180 bits (456), Expect = 8e-44
Identities = 85/110 (77%), Positives = 98/110 (89%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T H+++AD + ENIPW GVDEW LK+EVN LI+ TL EREREIVRLYY
Sbjct: 393 EAFPSLNGLPGETLHSYIADNRLENIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYY 452
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLD +CLTWE+IS+RIGLSRERVRQVGLVALEKLKHAARK+ L+AML +H
Sbjct: 453 GLDNECLTWEDISRRIGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502
[5][TOP]
>UniRef100_UPI0001984E9A PREDICTED: hypothetical protein isoform 2 n=1 Tax=Vitis vinifera
RepID=UPI0001984E9A
Length = 496
Score = 176 bits (447), Expect = 8e-43
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYY
Sbjct: 387 EAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYY 446
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLD +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK +EAML ++
Sbjct: 447 GLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 496
[6][TOP]
>UniRef100_UPI0001984E99 PREDICTED: hypothetical protein isoform 1 n=1 Tax=Vitis vinifera
RepID=UPI0001984E99
Length = 507
Score = 176 bits (447), Expect = 8e-43
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYY
Sbjct: 398 EAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYY 457
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLD +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK +EAML ++
Sbjct: 458 GLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 507
[7][TOP]
>UniRef100_A7PAZ2 Chromosome chr16 scaffold_10, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PAZ2_VITVI
Length = 486
Score = 176 bits (447), Expect = 8e-43
Identities = 84/110 (76%), Positives = 98/110 (89%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T H+++AD + EN PW GVDEWALK+EVNKLIN TL ERER+I+RLYY
Sbjct: 377 EAFPSLNGLPGETLHSYIADVRLENNPWHGVDEWALKDEVNKLINTTLGERERDIIRLYY 436
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLD +CLTWE+ISKRIGLSRERVRQVGLVALEKLK+AARK +EAML ++
Sbjct: 437 GLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKNAARKGRMEAMLVKY 486
[8][TOP]
>UniRef100_Q9SLX4 Sigma factor n=1 Tax=Nicotiana tabacum RepID=Q9SLX4_TOBAC
Length = 508
Score = 174 bits (440), Expect = 5e-42
Identities = 82/109 (75%), Positives = 96/109 (88%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
E FPSLNGLPG+T H+++AD EN PW GVD WALK+EVN LI+ TL +REREI+RLYY
Sbjct: 399 EAFPSLNGLPGETLHSYIADNHLENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYY 458
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 240
GLD +CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK++L+AML +
Sbjct: 459 GLDNECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRQLDAMLIK 507
[9][TOP]
>UniRef100_Q9FPH1 At1g64860 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH1_ARATH
Length = 502
Score = 172 bits (435), Expect = 2e-41
Identities = 80/110 (72%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYY
Sbjct: 393 DAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYY 452
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 453 GLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[10][TOP]
>UniRef100_O24629 AT1G64860 protein n=2 Tax=Arabidopsis thaliana RepID=O24629_ARATH
Length = 502
Score = 172 bits (435), Expect = 2e-41
Identities = 80/110 (72%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYY
Sbjct: 393 DAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYY 452
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 453 GLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[11][TOP]
>UniRef100_O22576 RNA polymerase sigma subunit 1 n=1 Tax=Arabidopsis thaliana
RepID=O22576_ARATH
Length = 502
Score = 172 bits (435), Expect = 2e-41
Identities = 80/110 (72%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYY
Sbjct: 393 DAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYY 452
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 453 GLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[12][TOP]
>UniRef100_O22057 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22057_ARATH
Length = 502
Score = 172 bits (435), Expect = 2e-41
Identities = 80/110 (72%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T+H+++AD + EN PW G D+ ALKEEV+KLI+ TL ERE+EI+RLYY
Sbjct: 393 DAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYY 452
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLDK+CLTWE+ISKRIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 453 GLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502
[13][TOP]
>UniRef100_O49935 Sig1 protein n=1 Tax=Sinapis alba RepID=O49935_SINAL
Length = 481
Score = 171 bits (433), Expect = 3e-41
Identities = 80/110 (72%), Positives = 100/110 (90%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T+H+++AD + EN PW G D ALK+EV+KLI+VTL EREREI+RLYY
Sbjct: 372 DAFPSLNGLPGETHHSYIADNRLENNPWHGYDALALKDEVSKLISVTLGEREREIIRLYY 431
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
GLDK+CLTWE+IS+RIGLSRERVRQVGLVALEKLKHAARK+++EAM+ ++
Sbjct: 432 GLDKECLTWEDISQRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 481
[14][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 157 bits (398), Expect = 4e-37
Identities = 71/110 (64%), Positives = 93/110 (84%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+
Sbjct: 279 QAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYH 338
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 339 GIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 388
[15][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 157 bits (398), Expect = 4e-37
Identities = 71/110 (64%), Positives = 93/110 (84%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+
Sbjct: 411 QAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYH 470
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 471 GIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 520
[16][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 157 bits (398), Expect = 4e-37
Identities = 71/110 (64%), Positives = 93/110 (84%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+
Sbjct: 410 QAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYH 469
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 470 GIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 519
[17][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 157 bits (398), Expect = 4e-37
Identities = 71/110 (64%), Positives = 93/110 (84%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+
Sbjct: 311 QAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYH 370
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 371 GIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 420
[18][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 157 bits (398), Expect = 4e-37
Identities = 71/110 (64%), Positives = 93/110 (84%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPG+T H+++ D+ N PW G +EW LKEEVNKL+N TL ERER+I+RLY+
Sbjct: 233 QAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYH 292
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGL+A+EKLKHAAR+K LEA+L ++
Sbjct: 293 GIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALLEDY 342
[19][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 153 bits (386), Expect = 1e-35
Identities = 72/110 (65%), Positives = 91/110 (82%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN TL ERER+I+RLY+
Sbjct: 391 QAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSTLNERERDIIRLYH 450
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR+K L+A+L E+
Sbjct: 451 GIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALLEEY 500
[20][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 151 bits (382), Expect = 3e-35
Identities = 71/110 (64%), Positives = 91/110 (82%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN TL ERER+I+RLY+
Sbjct: 289 QAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYH 348
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR++ L+A+L E+
Sbjct: 349 GIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALLEEY 398
[21][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 151 bits (382), Expect = 3e-35
Identities = 71/110 (64%), Positives = 91/110 (82%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN TL ERER+I+RLY+
Sbjct: 387 QAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNSLINSTLNERERDIIRLYH 446
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR++ L+A+L E+
Sbjct: 447 GIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARREHLDALLEEY 496
[22][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 151 bits (381), Expect = 4e-35
Identities = 67/110 (60%), Positives = 91/110 (82%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPGDT H+++ D+ N PW G +EW LKEEVNKL+N L ERER+I++LY+
Sbjct: 352 QAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSNLTERERDIIQLYH 411
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGL+A+EKLK AR+K+L+A+L ++
Sbjct: 412 GIGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKQRARRKKLDALLQDY 461
[23][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 151 bits (381), Expect = 4e-35
Identities = 71/110 (64%), Positives = 90/110 (81%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN L ERER+I+RLY+
Sbjct: 391 QAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEERYLKEEVNNLINSNLNERERDIIRLYH 450
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQVGLVA+EKLKHAAR+K L+A+L E+
Sbjct: 451 GIGKQCHTWEDISRQFGLSRERVRQVGLVAMEKLKHAARRKHLDALLEEY 500
[24][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 147 bits (370), Expect = 7e-34
Identities = 69/110 (62%), Positives = 88/110 (80%)
Frame = -3
Query: 566 ETFPSLNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYY 387
+ FPSLNGLPGDT H+++ D+ N PW G +E LKEEVN LIN L ERER+I+RLY+
Sbjct: 240 QAFPSLNGLPGDTLHSYIEDQNVANDPWHGFEEMYLKEEVNNLINSNLNERERDIIRLYH 299
Query: 386 GLDKKCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
G+ K+C TWE+IS++ GLSRERVRQV LVA+EKLKHAAR+K L A+L ++
Sbjct: 300 GIGKQCHTWEDISRQFGLSRERVRQVRLVAMEKLKHAARRKHLNALLEDY 349
[25][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 82.8 bits (203), Expect = 2e-14
Identities = 44/100 (44%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Frame = -3
Query: 536 GDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL---DKKCL 366
G+T H+ VAD+ EN PW V+ +K++V+KL+ L RER+IVRL+YG+ D +
Sbjct: 574 GETLHSLVADRDIENQPWTIVERMLMKDDVDKLLTSQLGPRERDIVRLHYGVGREDGSVM 633
Query: 365 TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ E IS R G+SRERVRQ+ A+ KL+ +R++ L+ L
Sbjct: 634 SLESISYRYGVSRERVRQLETAAMRKLQIKSREQGLDRYL 673
[26][TOP]
>UniRef100_Q1Q6A4 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1Q6A4_9BACT
Length = 491
Score = 67.4 bits (163), Expect = 7e-10
Identities = 40/102 (39%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Frame = -3
Query: 545 GLPGDT-YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKK 372
G G+T + +F+ DK+ + P LKE++ K+++ TL REREI++L +G+ D
Sbjct: 387 GSDGETMFEDFIQDKKID-APIFLAQRSLLKEQIQKVLD-TLSYREREIIKLRFGISDGY 444
Query: 371 CLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ EEI KR ++RER+RQ+ +AL KL+H R ++LE L
Sbjct: 445 THSLEEIGKRFNITRERIRQIEAIALRKLQHPVRSRKLEGFL 486
[27][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV14_SULAA
Length = 282
Score = 65.5 bits (158), Expect = 3e-09
Identities = 40/76 (52%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = -3
Query: 470 EWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVAL 294
E LKEE +L+NV L EREREI++L YGL+ + T EE+ + +G+SRERVRQ+ AL
Sbjct: 207 ESTLKEEFERLLNV-LDEREREIIKLRYGLEGLEPKTLEEVGEMLGISRERVRQLEQRAL 265
Query: 293 EKLKHAARKKELEAML 246
+KLK A KK L+ L
Sbjct: 266 KKLKAVALKKHLQNFL 281
[28][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
RepID=B2KBW8_ELUMP
Length = 571
Score = 63.9 bits (154), Expect = 8e-09
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+F+ DK N P + ++ K+EV++++N TL ERE +I+RL +G+D T EE+ K
Sbjct: 479 DFIEDKAGAN-PTVTASDFLRKQEVSEVLN-TLSEREAKIIRLRFGIDSGYPRTLEEVGK 536
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RERVRQ+ A+ KL+H +R K L+
Sbjct: 537 MFNVTRERVRQIEAKAIRKLRHPSRTKMLK 566
[29][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
PSU-1 RepID=Q6J2R2_OENOB
Length = 465
Score = 63.9 bits (154), Expect = 8e-09
Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ D + E+ P + LK+++ +++ TL ERE ++RL +GL D K T EE+ +
Sbjct: 373 DFIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGR 430
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 240
G++RER+RQ+ AL KL+H +R K+L+ + E
Sbjct: 431 VFGVTRERIRQIEAKALRKLRHPSRSKQLKDFMEE 465
[30][TOP]
>UniRef100_B9XH89 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
RepID=B9XH89_9BACT
Length = 614
Score = 63.9 bits (154), Expect = 8e-09
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = -3
Query: 530 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 354
T+ +F+ DK +EN P LK+++N ++ TL ERER IV L +GL D T EE
Sbjct: 515 TFGDFIEDKSAEN-PSDMTSYSLLKDKLNDVL-ATLTERERRIVELRFGLVDGYARTLEE 572
Query: 353 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ K+ ++RER+RQ+ AL KL+H R + L+ L
Sbjct: 573 VGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFL 608
[31][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
RepID=A0NJA0_OENOE
Length = 458
Score = 63.9 bits (154), Expect = 8e-09
Identities = 35/95 (36%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ D + E+ P + LK+++ +++ TL ERE ++RL +GL D K T EE+ +
Sbjct: 366 DFIEDNEGES-PIESTSDQMLKDQLEEVLG-TLTEREENVLRLRFGLEDGKTRTLEEVGR 423
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAMLFE 240
G++RER+RQ+ AL KL+H +R K+L+ + E
Sbjct: 424 VFGVTRERIRQIEAKALRKLRHPSRSKQLKDFMEE 458
[32][TOP]
>UniRef100_C9M9L0 RNA polymerase major sigma factor n=1 Tax=Jonquetella anthropi E3_33
E1 RepID=C9M9L0_9BACT
Length = 969
Score = 63.5 bits (153), Expect = 1e-08
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ D+ + + D L+E++ +++N L +RERE++R +GL D + T EE+ +
Sbjct: 878 DFIEDRSLPSPEDVAADN-LLQEQIEEMLNA-LSDREREVLRYRFGLEDGRSYTLEEVGR 935
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
R G++RER+RQ+ AL KL+H +R K+L L
Sbjct: 936 RFGVTRERIRQIEAKALRKLRHPSRSKKLRDFL 968
[33][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
marinus DSM 4252 RepID=C1ZU97_RHOMR
Length = 279
Score = 63.2 bits (152), Expect = 1e-08
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = -3
Query: 515 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISKRI 339
V + + P G+ E +LK ++ + ++ TL RE EI+RLY+G+ ++ LT EEI +R
Sbjct: 189 VLPNEEDTSPDEGLMEESLKIDIERALS-TLHPREAEIIRLYFGIGREHPLTLEEIGQRF 247
Query: 338 GLSRERVRQVGLVALEKLKHAARKKELE 255
GL+RERVRQ+ AL KL+ R++EL+
Sbjct: 248 GLTRERVRQIKEKALRKLRQKHRREELQ 275
[34][TOP]
>UniRef100_C1ZAZ0 RNA polymerase sigma factor n=1 Tax=Planctomyces limnophilus DSM
3776 RepID=C1ZAZ0_PLALI
Length = 550
Score = 63.2 bits (152), Expect = 1e-08
Identities = 39/105 (37%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Frame = -3
Query: 527 YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEI 351
+ +F+ D +E+ P + + LK++++ ++ TL REREI++L YGL D T EE+
Sbjct: 449 FGDFIEDDNTES-PVMAATQEMLKDKIDNVLK-TLTYREREIIKLRYGLGDGYTYTLEEV 506
Query: 350 SKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH*YDGLII 216
+ ++RERVRQ+ A+ KL+H R K+L+ L DGL+I
Sbjct: 507 GRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKGFL-----DGLMI 546
[35][TOP]
>UniRef100_C6PJN3 RNA polymerase sigma factor n=1 Tax=Thermoanaerobacter italicus Ab9
RepID=C6PJN3_9THEO
Length = 273
Score = 62.8 bits (151), Expect = 2e-08
Identities = 41/103 (39%), Positives = 66/103 (64%), Gaps = 2/103 (1%)
Frame = -3
Query: 548 NGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-K 372
NG GD +ADK++ + P ++ LKE+V+++++ TL RE +++RL +GLD K
Sbjct: 177 NGKLGD----IIADKEAVD-PVEELESMLLKEQVDEVLS-TLAPREEKVLRLRFGLDDGK 230
Query: 371 CLTWEEISKRIG-LSRERVRQVGLVALEKLKHAARKKELEAML 246
T EE+ K +G +SRERVRQ+ AL++L+H R + L+ L
Sbjct: 231 IRTLEEVGKELGGISRERVRQIETKALKRLRHPNRSRRLKEFL 273
[36][TOP]
>UniRef100_B0P3M7 RNA polymerase sigma factor n=1 Tax=Clostridium sp. SS2/1
RepID=B0P3M7_9CLOT
Length = 363
Score = 62.8 bits (151), Expect = 2e-08
Identities = 36/90 (40%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIG 336
Q EN+P + D A LKE++++++ TL ERE++++RL +GLD + T EE+ K
Sbjct: 275 QDENVP-VPADAAAFTLLKEQLDEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFN 332
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 333 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 362
[37][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 62.4 bits (150), Expect = 2e-08
Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++E+ P L+E ++ ++N TL ERE +++RL +GLD + T EE+ +
Sbjct: 267 DFITDEEAES-PEESASFVLLREHLDGILN-TLTEREEKVLRLRFGLDDGRPRTLEEVGQ 324
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K+L+
Sbjct: 325 EFGVTRERIRQIEAKALRKLRHPSRSKKLK 354
[38][TOP]
>UniRef100_C4CVR1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Spirosoma
linguale DSM 74 RepID=C4CVR1_9SPHI
Length = 287
Score = 62.4 bits (150), Expect = 2e-08
Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = -3
Query: 515 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 339
V + E+ P G+ +L++EV + ++ TL +RE +++ LY+GL+ + +T EEI ++
Sbjct: 197 VLENDGEDKPDSGLINDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255
Query: 338 GLSRERVRQVGLVALEKLKHAARKKELEAML 246
L+RERVRQ+ A+ +L+H +R K L+ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKTYL 286
[39][TOP]
>UniRef100_A8RBC2 RNA polymerase sigma factor n=1 Tax=Eubacterium dolichum DSM 3991
RepID=A8RBC2_9FIRM
Length = 398
Score = 62.4 bits (150), Expect = 2e-08
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWE 357
+F+ DK++ + DE+A LK+E+N ++ L ERE +++RL +GL D + T E
Sbjct: 305 DFIEDKEA-----LSPDEYANNQLLKDEINTVLQ-GLTEREEKVLRLRFGLYDGRTRTLE 358
Query: 356 EISKRIGLSRERVRQVGLVALEKLKHAARKKELE 255
E+ K ++RER+RQ+ AL KLKH R K L+
Sbjct: 359 EVGKEFNVTRERIRQIEAKALRKLKHPTRSKRLK 392
[40][TOP]
>UniRef100_B1GZP5 RNA polymerase sigma factor n=1 Tax=uncultured Termite group 1
bacterium phylotype Rs-D17 RepID=B1GZP5_UNCTG
Length = 573
Score = 62.0 bits (149), Expect = 3e-08
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+F+ D+ S N P + ++ L+ E+ K++ TL RE EI+RL YG+ T EE+ K
Sbjct: 482 DFIEDQNSPN-PVVKTQQYRLQLELEKVL-ATLAPREAEIIRLRYGIGIGYPSTLEEVGK 539
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ G++RERVRQ+ A+ KLK+ R K L L
Sbjct: 540 KFGITRERVRQIEAKAIRKLKYPRRNKSLREYL 572
[41][TOP]
>UniRef100_A5KKN8 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KKN8_9FIRM
Length = 273
Score = 62.0 bits (149), Expect = 3e-08
Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = -3
Query: 533 DTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWE 357
D+ +FV D+ SE P +D KEEV +L+ TL +RE+E++ L +GL K + T E
Sbjct: 187 DSLGDFVEDR-SETTPEDAMDVLVRKEEVQELLE-TLNDREKEVISLRFGLGKDRTYTLE 244
Query: 356 EISKRIGLSRERVRQVGLVALEKLKHAA 273
EI + +G++RERVRQ+ A+EKL+ A
Sbjct: 245 EIGESLGITRERVRQIESKAMEKLRKKA 272
[42][TOP]
>UniRef100_Q8RE13 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
nucleatum RepID=Q8RE13_FUSNN
Length = 331
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 239 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 296
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 297 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 326
[43][TOP]
>UniRef100_Q1PW65 RNA polymerase sigma factor n=1 Tax=Candidatus Kuenenia
stuttgartiensis RepID=Q1PW65_9BACT
Length = 551
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/96 (36%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Frame = -3
Query: 530 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 354
++ +F+ D+++E+ P + LK+++ ++ TL REREI++L YG+ D T EE
Sbjct: 451 SFGDFIEDEKAES-PVAAATQEMLKDKIESVLE-TLTYREREIIKLRYGIGDGYTYTLEE 508
Query: 353 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ K ++RERVRQ+ A+ KL+H R ++LE L
Sbjct: 509 VGKIFKVTRERVRQIEAKAVRKLQHPIRSRKLEGFL 544
[44][TOP]
>UniRef100_D0BQ42 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_33
RepID=D0BQ42_9FUSO
Length = 416
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 324 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 381
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 382 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 411
[45][TOP]
>UniRef100_C7XNV3 RNA polymerase sigma factor RpoS n=1 Tax=Fusobacterium sp. 3_1_36A2
RepID=C7XNV3_9FUSO
Length = 418
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 326 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 383
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 384 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 413
[46][TOP]
>UniRef100_C3WX07 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 7_1
RepID=C3WX07_9FUSO
Length = 417
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 325 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 382
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 383 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 412
[47][TOP]
>UniRef100_C3WPP3 RNA polymerase sigma factor n=2 Tax=Fusobacterium
RepID=C3WPP3_9FUSO
Length = 340
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 248 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 305
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 306 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 335
[48][TOP]
>UniRef100_B0ME78 RNA polymerase sigma factor n=1 Tax=Anaerostipes caccae DSM 14662
RepID=B0ME78_9FIRM
Length = 370
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIG 336
Q +N+P + D A LKE++++++ TL ERE++++RL +GLD + T EE+ K
Sbjct: 282 QDDNVP-VPADAAAFTLLKEQLSEVLG-TLTEREQKVLRLRFGLDDSRARTLEEVGKEFN 339
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 340 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 369
[49][TOP]
>UniRef100_A5TTP9 RNA polymerase sigma factor n=1 Tax=Fusobacterium nucleatum subsp.
polymorphum ATCC 10953 RepID=A5TTP9_FUSNP
Length = 418
Score = 61.6 bits (148), Expect = 4e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 326 DFVEDQKTTS-PYEATNRAILREELDAVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 383
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 384 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 413
[50][TOP]
>UniRef100_Q11U62 RNA polymerase sigma-70 factor n=1 Tax=Cytophaga hutchinsonii ATCC
33406 RepID=Q11U62_CYTH3
Length = 287
Score = 61.2 bits (147), Expect = 5e-08
Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = -3
Query: 515 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 339
V + SE+ P + +L+ EV + ++ TL +RE +++ LY+GL+ + +T EEI ++
Sbjct: 197 VLENSSESAPDSSLMNDSLRREVQRALS-TLTQREADVISLYFGLNGEHSMTLEEIGEKF 255
Query: 338 GLSRERVRQVGLVALEKLKHAARKKELEAML 246
L+RERVRQ+ A+ +L+H +R K L+ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
[51][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
ATCC 19414 RepID=C8NZE6_ERYRH
Length = 459
Score = 61.2 bits (147), Expect = 5e-08
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWA----LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWE 357
+F+ DK + + DE+A LKEE+ K++ L ERE +++RL +GL D + T E
Sbjct: 366 DFIEDKDA-----LSPDEYANNQLLKEEI-KMVLEGLTEREEKVLRLRFGLEDGRTRTLE 419
Query: 356 EISKRIGLSRERVRQVGLVALEKLKHAARKKEL 258
E+ K ++RER+RQ+ AL KLKH R K L
Sbjct: 420 EVGKEFNVTRERIRQIEAKALRKLKHPTRSKRL 452
[52][TOP]
>UniRef100_C6W468 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Dyadobacter fermentans DSM 18053 RepID=C6W468_DYAFD
Length = 287
Score = 61.2 bits (147), Expect = 5e-08
Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = -3
Query: 515 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 339
V + E+ P G+ +L++EV + + TL +RE +++ LY+GL+ + +T EEI ++
Sbjct: 197 VLENDLEDKPDSGLVNESLRKEVQRAL-CTLTQREADVIALYFGLNGEHAMTLEEIGEKF 255
Query: 338 GLSRERVRQVGLVALEKLKHAARKKELEAML 246
L+RERVRQ+ A+ +L+H +R K L+ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHVSRSKALKTYL 286
[53][TOP]
>UniRef100_C3WID8 RNA polymerase sigma factor n=1 Tax=Fusobacterium sp. 2_1_31
RepID=C3WID8_9FUSO
Length = 269
Score = 61.2 bits (147), Expect = 5e-08
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D+++ + P+ + L+EE++ ++ TL RE +++R YGLD T EE+ K
Sbjct: 177 DFVEDQKTTS-PYEATNRAILREELDGVLK-TLSPREEKVLRYRYGLDDSSPKTLEEVGK 234
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +RKK+LE
Sbjct: 235 IFNVTRERIRQIEVKALRKLRHPSRKKKLE 264
[54][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
RepID=Q6AK94_DESPS
Length = 447
Score = 60.8 bits (146), Expect = 7e-08
Identities = 34/93 (36%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Frame = -3
Query: 530 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEE 354
T +F+ +++S++ P+ V L V ++++ TL +RE +I+RL +G+ +K T EE
Sbjct: 353 TLGDFLENQESQS-PYEAVQNRELSGRVTEILS-TLSDREEKIIRLRFGIGEKAEYTLEE 410
Query: 353 ISKRIGLSRERVRQVGLVALEKLKHAARKKELE 255
I KR +SRER+RQ+ AL +L+H++R+ +L+
Sbjct: 411 IGKRFNVSRERIRQIEKKALNRLRHSSRRDKLK 443
[55][TOP]
>UniRef100_C5CDI4 RNA polymerase sigma factor n=1 Tax=Kosmotoga olearia TBF 19.5.1
RepID=C5CDI4_KOSOT
Length = 405
Score = 60.8 bits (146), Expect = 7e-08
Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = -3
Query: 551 LNGLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DK 375
++G T +FV D+ E P + L+E+++++++ TL RE ++++ YGL D
Sbjct: 296 ISGDEESTMGDFVHDESIEK-PEEAAIKMLLREQIDEVLD-TLSPREAMVLKMRYGLLDG 353
Query: 374 KCLTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
K T EE+ + ++RER+RQ+ + AL KL+H +R K+L+A+L
Sbjct: 354 KTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALL 396
[56][TOP]
>UniRef100_C2E8V2 RNA polymerase sigma factor n=1 Tax=Lactobacillus ruminis ATCC
25644 RepID=C2E8V2_9LACO
Length = 373
Score = 60.8 bits (146), Expect = 7e-08
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQIESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 360 RHPSRSKQLKDFL 372
[57][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 60.8 bits (146), Expect = 7e-08
Identities = 32/73 (43%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ K++N TL RE +++RL +GLD + T EE+ K ++RER+RQ+ AL KL
Sbjct: 306 LKEQLLKILN-TLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 364
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 365 RHPSRSKKLKDYL 377
[58][TOP]
>UniRef100_C9MZ09 RNA polymerase sigma factor RpoD n=1 Tax=Leptotrichia hofstadii
F0254 RepID=C9MZ09_9FUSO
Length = 392
Score = 60.5 bits (145), Expect = 9e-08
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKCL-TWEEISK 345
+FV D + N P+ LKE++++++ TL ERE ++R YGLD T EE+ K
Sbjct: 301 DFVEDDKFAN-PYDATTRVLLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGK 358
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 359 IFNVTRERIRQIEVKALRKLRHPSRRKKLE 388
[59][TOP]
>UniRef100_C7NC70 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Leptotrichia buccalis DSM 1135 RepID=C7NC70_LEPBD
Length = 392
Score = 60.5 bits (145), Expect = 9e-08
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKCL-TWEEISK 345
+FV D + N P+ LKE++++++ TL ERE ++R YGLD T EE+ K
Sbjct: 301 DFVEDDKFAN-PYDATTRILLKEQLDEVLK-TLNEREEMVLRYRYGLDDGSQKTLEEVGK 358
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 359 IFNVTRERIRQIEVKALRKLRHPSRRKKLE 388
[60][TOP]
>UniRef100_C6IWD8 RNA polymerase sigma factor (Fragment) n=1 Tax=Paenibacillus sp.
oral taxon 786 str. D14 RepID=C6IWD8_9BACL
Length = 325
Score = 60.5 bits (145), Expect = 9e-08
Identities = 30/70 (42%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ ++++ TL ERE ++RL +G+D + T EE+ K G++RER+RQ+ AL KL
Sbjct: 253 LKEQLEEVLD-TLTEREENVLRLRFGMDDGRTRTLEEVGKEFGVTRERIRQIEAKALRKL 311
Query: 284 KHAARKKELE 255
+H +R K L+
Sbjct: 312 RHPSRSKRLK 321
[61][TOP]
>UniRef100_UPI000196B4EB hypothetical protein CATMIT_01300 n=1 Tax=Catenibacterium mitsuokai
DSM 15897 RepID=UPI000196B4EB
Length = 418
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LK+E+N+++ + L +RE +++RL +GLD + T EE+ K ++RER+RQ+ AL KL
Sbjct: 345 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFNVTRERIRQIEAKALRKL 403
Query: 284 KHAARKKELEAML 246
KH +R K L+ L
Sbjct: 404 KHPSRSKRLKDFL 416
[62][TOP]
>UniRef100_UPI0001789970 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789970
Length = 377
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 364 RHPSRSKRLKDFL 376
[63][TOP]
>UniRef100_UPI0001693157 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001693157
Length = 375
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[64][TOP]
>UniRef100_Q38X96 RNA polymerase sigma factor n=1 Tax=Lactobacillus sakei subsp.
sakei 23K RepID=Q38X96_LACSS
Length = 369
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 356 RHPSRSKQLKDFL 368
[65][TOP]
>UniRef100_Q1WTP3 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius UCC118
RepID=Q1WTP3_LACS1
Length = 372
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 359 RHPSRSKQLKDFL 371
[66][TOP]
>UniRef100_C6CTW1 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. JDR-2
RepID=C6CTW1_PAESJ
Length = 376
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 304 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 363 RHPSRSKRLKDFL 375
[67][TOP]
>UniRef100_C1A7K2 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
RepID=C1A7K2_GEMAT
Length = 286
Score = 60.1 bits (144), Expect = 1e-07
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEK 288
AL E + + + L ERE +I+RLY+G+D +T EEI ++G++RERVRQ+ AL +
Sbjct: 213 ALTEAIEESLG-GLKEREAKILRLYFGIDGADPMTLEEIGSQLGITRERVRQIKEKALSR 271
Query: 287 LKHAARKKELEAML 246
L+H +R K LE+ L
Sbjct: 272 LRHVSRSKSLESFL 285
[68][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 60.1 bits (144), Expect = 1e-07
Identities = 38/96 (39%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Frame = -3
Query: 530 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEE 354
T + ++ K +E+I ++E + +E+ +++V L ERE+EI+++ YGLD ++ T EE
Sbjct: 187 TLLDVLSKKGTEDIEKELIEE-TIHKELESMLDV-LDEREKEIIKMRYGLDGEEPKTLEE 244
Query: 353 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ +++G+SRERVRQ+ AL+KLK A KK L+ L
Sbjct: 245 VGEKLGISRERVRQLEQRALKKLKAVALKKHLKDFL 280
[69][TOP]
>UniRef100_C9LTA9 RNA polymerase sigma factor RpoD n=1 Tax=Selenomonas sputigena ATCC
35185 RepID=C9LTA9_9FIRM
Length = 375
Score = 60.1 bits (144), Expect = 1e-07
Identities = 30/73 (41%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ ++++ TL ERE ++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEEVLD-TLTEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R ++L+ L
Sbjct: 362 RHPSRSRKLKDFL 374
[70][TOP]
>UniRef100_C7TJI1 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus Lc 705
RepID=C7TJI1_LACRL
Length = 416
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 403 RHPSRSKQLKDFL 415
[71][TOP]
>UniRef100_C6J365 RNA polymerase sigma factor n=1 Tax=Paenibacillus sp. oral taxon
786 str. D14 RepID=C6J365_9BACL
Length = 374
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 361 RHPSRSKRLKDFL 373
[72][TOP]
>UniRef100_C5F5B8 RNA polymerase sigma factor n=1 Tax=Lactobacillus paracasei subsp.
paracasei 8700:2 RepID=C5F5B8_LACPA
Length = 352
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 280 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 338
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 339 RHPSRSKQLKDFL 351
[73][TOP]
>UniRef100_C4FJU2 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium
yellowstonense SS-5 RepID=C4FJU2_9AQUI
Length = 78
Score = 60.1 bits (144), Expect = 1e-07
Identities = 34/76 (44%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = -3
Query: 470 EWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVAL 294
E + EE+ +++V L ERE+EI+++ YGL+ ++ T EE+ +++G+SRERVRQ+ AL
Sbjct: 3 EETIHEELESMLDV-LDEREKEIIKMRYGLNGEESRTLEEVGEKLGISRERVRQLEQRAL 61
Query: 293 EKLKHAARKKELEAML 246
+KLK A KK L+ L
Sbjct: 62 KKLKAVALKKHLKDFL 77
[74][TOP]
>UniRef100_C2JXD0 RNA polymerase sigma factor n=1 Tax=Lactobacillus rhamnosus LMS2-1
RepID=C2JXD0_LACRH
Length = 416
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 403 RHPSRSKQLKDFL 415
[75][TOP]
>UniRef100_C2FTX8 RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium
spiritivorum RepID=C2FTX8_9SPHI
Length = 286
Score = 60.1 bits (144), Expect = 1e-07
Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Frame = -3
Query: 476 VDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISKRIGLSRERVRQVGLV 300
+DE +L EE+ + + TL EREREI+ L++GL L+ EEI ++ L+RERVRQ+
Sbjct: 210 IDE-SLSEEIKRSL-ATLTEREREIIVLFFGLGSNHQLSLEEIGEKFNLTRERVRQIKDK 267
Query: 299 ALEKLKHAARKKELEAML 246
AL++L+H +R K L++ L
Sbjct: 268 ALQRLRHTSRSKILKSYL 285
[76][TOP]
>UniRef100_B3WEK4 RNA polymerase sigma factor n=3 Tax=Lactobacillus casei group
RepID=B3WEK4_LACCB
Length = 422
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 350 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 408
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 409 RHPSRSKQLKDFL 421
[77][TOP]
>UniRef100_C2EFJ0 RNA polymerase sigma factor n=1 Tax=Lactobacillus salivarius ATCC
11741 RepID=C2EFJ0_9LACO
Length = 372
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 359 RHPSRSKQLKDFL 371
[78][TOP]
>UniRef100_C0XLP2 RNA polymerase sigma factor n=2 Tax=Lactobacillus
RepID=C0XLP2_LACHI
Length = 389
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 376 RHPSRSKQLKDFL 388
[79][TOP]
>UniRef100_C0WTG9 RNA polymerase sigma factor n=1 Tax=Lactobacillus buchneri ATCC
11577 RepID=C0WTG9_LACBU
Length = 389
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 317 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 375
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 376 RHPSRSKQLKDFL 388
[80][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
RepID=B9YB48_9FIRM
Length = 408
Score = 60.1 bits (144), Expect = 1e-07
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ DK + + P + LK+E+N ++ L ERE +++RL +GL D + T EE+ K
Sbjct: 315 DFIEDKDAMS-PDQYANNQLLKDEINNVLQ-GLTEREEKVLRLRFGLYDGRTRTLEEVGK 372
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KLKH R K L
Sbjct: 373 EFNVTRERIRQIEAKALRKLKHPTRSKRL 401
[81][TOP]
>UniRef100_C8WY27 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2
Tax=Alicyclobacillus acidocaldarius RepID=C8WY27_ALIAC
Length = 368
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 355 RHPSRSKRLKDFL 367
[82][TOP]
>UniRef100_C7TCR3 RNA polymerase sigma factor n=2 Tax=Lactobacillus rhamnosus
RepID=C7TCR3_LACRG
Length = 416
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 344 LKEQLESVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 402
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 403 RHPSRSKQLKDFL 415
[83][TOP]
>UniRef100_B3YVL5 RNA polymerase sigma factor n=1 Tax=Bacillus cereus W
RepID=B3YVL5_BACCE
Length = 373
Score = 60.1 bits (144), Expect = 1e-07
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = -3
Query: 545 GLPGDTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KC 369
G GD++ + Q P LKE++ +++ TL +RE ++RL +GLD +
Sbjct: 273 GEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRT 331
Query: 368 LTWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
T EE+ K G++RER+RQ+ AL KL+H +R K L+ L
Sbjct: 332 RTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
[84][TOP]
>UniRef100_B1C3P6 RNA polymerase sigma factor n=1 Tax=Clostridium spiroforme DSM 1552
RepID=B1C3P6_9FIRM
Length = 415
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LK+E+N+++ + L +RE +++RL +GLD + T EE+ K ++RER+RQ+ AL KL
Sbjct: 342 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKL 400
Query: 284 KHAARKKELEAML 246
KH +R K L+ L
Sbjct: 401 KHPSRSKRLKDFL 413
[85][TOP]
>UniRef100_B0N3Z8 RNA polymerase sigma factor n=2 Tax=Bacteria RepID=B0N3Z8_9FIRM
Length = 417
Score = 60.1 bits (144), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LK+E+N+++ + L +RE +++RL +GLD + T EE+ K ++RER+RQ+ AL KL
Sbjct: 344 LKDELNEVL-LELTDREEKVLRLRFGLDDGRTRTLEEVGKEFSVTRERIRQIEAKALRKL 402
Query: 284 KHAARKKELEAML 246
KH +R K L+ L
Sbjct: 403 KHPSRSKRLKDFL 415
[86][TOP]
>UniRef100_A3HT44 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Algoriphagus sp.
PR1 RepID=A3HT44_9SPHI
Length = 287
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/91 (35%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = -3
Query: 515 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 339
V + + P G+ +L++EV + ++ TL +RE +++ LY+GL+ + +T EEI ++
Sbjct: 197 VLENDGDEKPDDGLMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255
Query: 338 GLSRERVRQVGLVALEKLKHAARKKELEAML 246
L+RERVRQ+ A+ +L+H +R K L+ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKTLKPYL 286
[87][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 60.1 bits (144), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 364 RHPSRSKRLKDFL 376
[88][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
subsp. larvae BRL-230010 RepID=UPI0001694293
Length = 367
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL ERE ++RL +GL D + T EE+ K G++RER+RQ+ AL KL
Sbjct: 295 LKEQLEHVLD-TLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAKALRKL 353
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 354 RHPSRSKRLKDFL 366
[89][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
Length = 370
Score = 59.7 bits (143), Expect = 1e-07
Identities = 30/73 (41%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L+E++++++ TL ERE++++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 298 LREQLDEVLK-TLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKL 356
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 357 RHPSRSKKLKDFL 369
[90][TOP]
>UniRef100_C9L8C6 RNA polymerase sigma factor RpoD n=1 Tax=Blautia hansenii DSM 20583
RepID=C9L8C6_RUMHA
Length = 330
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 336
Q +N+P + D A LKE++ +++ TL ERE++++RL +GLD + T EE+ K
Sbjct: 242 QDDNVP-VPADAAAFTLLKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFN 299
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 300 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 329
[91][TOP]
>UniRef100_C9B6G3 RNA polymerase sigma-43 factor n=8 Tax=Enterococcus faecium
RepID=C9B6G3_ENTFC
Length = 369
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 356 RHPSRSKQLKDFL 368
[92][TOP]
>UniRef100_C7M639 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M639_CAPOD
Length = 287
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE ++VRLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLSDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[93][TOP]
>UniRef100_C7CSZ1 RNA polymerase sigma factor n=1 Tax=Enterococcus faecalis T1
RepID=C7CSZ1_ENTFA
Length = 368
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKQLKDFL 367
[94][TOP]
>UniRef100_C6JI10 RNA polymerase sigma factor n=1 Tax=Fusobacterium varium ATCC 27725
RepID=C6JI10_FUSVA
Length = 414
Score = 59.7 bits (143), Expect = 1e-07
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D + N P+ + L+E++N ++N TL RE ++R YGLD T EE+ K
Sbjct: 323 DFVEDHKMLN-PYELTNRSLLREQLNGVLN-TLSSREERVLRYRYGLDDGSPKTLEEVGK 380
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 381 IFKVTRERIRQIEVKALRKLRHPSRRKKLE 410
[95][TOP]
>UniRef100_C2HA56 RNA polymerase sigma factor n=4 Tax=Enterococcus faecium
RepID=C2HA56_ENTFC
Length = 369
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 356 RHPSRSKQLKDFL 368
[96][TOP]
>UniRef100_C0ET20 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0ET20_9FIRM
Length = 367
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKEE+ + + +L ERER +++L +GLD K T EE+ K ++RER+RQ+ AL KL
Sbjct: 295 LKEELEEAM-ASLTERERNVIKLRFGLDDGKTRTLEEVGKEFNVTRERIRQIEAKALRKL 353
Query: 284 KHAARKKELEAML 246
+H +R ++L+ L
Sbjct: 354 RHPSRSRKLKDFL 366
[97][TOP]
>UniRef100_C0BG96 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Flavobacteria
bacterium MS024-2A RepID=C0BG96_9BACT
Length = 287
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE ++VRLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVVRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[98][TOP]
>UniRef100_C6Y2J2 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Pedobacter
RepID=C6Y2J2_PEDHD
Length = 286
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/74 (44%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISKRIGLSRERVRQVGLVALEK 288
+L EE+ + ++ TL EREREI+ L++GL L+ EEI ++ L+RERVRQ+ AL++
Sbjct: 213 SLSEEIKRSLS-TLTEREREIIVLFFGLSTNHPLSLEEIGEKFNLTRERVRQIKDKALQR 271
Query: 287 LKHAARKKELEAML 246
L+H +R K L++ L
Sbjct: 272 LRHTSRSKILKSYL 285
[99][TOP]
>UniRef100_A5ZYP8 RNA polymerase sigma factor n=1 Tax=Ruminococcus obeum ATCC 29174
RepID=A5ZYP8_9FIRM
Length = 330
Score = 59.7 bits (143), Expect = 1e-07
Identities = 35/90 (38%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 336
Q +N+P + D A LKE++ +++ TL ERE++++RL +GLD + T EE+ K
Sbjct: 242 QDDNVP-VPADAAAFTLLKEQLIEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGKEFN 299
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 300 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 329
[100][TOP]
>UniRef100_A3IBK5 RNA polymerase sigma factor n=1 Tax=Bacillus sp. B14905
RepID=A3IBK5_9BACI
Length = 375
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +I+ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVID-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[101][TOP]
>UniRef100_A1ZP06 RpoD n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP06_9SPHI
Length = 287
Score = 59.7 bits (143), Expect = 1e-07
Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Frame = -3
Query: 515 VADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRI 339
V + +SE P + +L++EV + ++ TL +RE +++ LY+GL+ + +T EEI ++
Sbjct: 197 VLENESEVKPDSELMNDSLRKEVQRALS-TLTQREADVITLYFGLNGEHAMTLEEIGEKF 255
Query: 338 GLSRERVRQVGLVALEKLKHAARKKELEAML 246
L+RERVRQ+ A+ +L+H +R K L+ L
Sbjct: 256 NLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
[102][TOP]
>UniRef100_P52329 RNA polymerase sigma factor rpoD n=21 Tax=Enterococcus faecalis
RepID=RPOD_ENTFA
Length = 368
Score = 59.7 bits (143), Expect = 1e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKQLKDFL 367
[103][TOP]
>UniRef100_UPI000185CB93 RNA polymerase sigma factor RpoD n=1 Tax=Capnocytophaga sputigena
ATCC 33612 RepID=UPI000185CB93
Length = 287
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE +++RLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHAMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[104][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
RepID=Q74IZ4_LACJO
Length = 372
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ ++++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 281 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 338
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 339 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[105][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
39073 RepID=Q2RKT5_MOOTA
Length = 361
Score = 59.3 bits (142), Expect = 2e-07
Identities = 32/93 (34%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ ++ P L+E++ +++N +L RE+ ++RL +GLD + T EE+ +
Sbjct: 270 DFIEDEDAQ-APAEAASFMLLREQLEEVLN-SLTPREKRVLRLRFGLDDGRARTLEEVGQ 327
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R K+L+ L
Sbjct: 328 EFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 360
[106][TOP]
>UniRef100_Q03F68 RNA polymerase sigma factor n=1 Tax=Pediococcus pentosaceus ATCC
25745 RepID=Q03F68_PEDPA
Length = 379
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 307 LKEQLEGVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 365
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 366 RHPSRSKQLKDFL 378
[107][TOP]
>UniRef100_A5D3U6 RNA polymerase sigma factor n=1 Tax=Pelotomaculum thermopropionicum
SI RepID=A5D3U6_PELTS
Length = 363
Score = 59.3 bits (142), Expect = 2e-07
Identities = 29/73 (39%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L+E++++++ TL ERE+ ++RL +GLD + T EE+ ++ G++RER+RQ+ L KL
Sbjct: 291 LREQLDEVLK-TLTEREQRVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 349
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 350 RHPSRSKKLKDYL 362
[108][TOP]
>UniRef100_C6IUR4 RNA polymerase sigma factor rpoD n=1 Tax=Bacteroides sp. 1_1_6
RepID=C6IUR4_9BACE
Length = 286
Score = 59.3 bits (142), Expect = 2e-07
Identities = 28/73 (38%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL ERE+EI+++++G+ ++ +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 284 KHAARKKELEAML 246
+ + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[109][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
ATCC 33313 RepID=C5RBJ7_WEIPA
Length = 378
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GL D + T EE+ K G++RER+RQ+ AL KL
Sbjct: 306 LKEQLESVLD-TLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 364
Query: 284 KHAARKKELEAML 246
+H +R K+L L
Sbjct: 365 RHPSRSKQLRDFL 377
[110][TOP]
>UniRef100_C4VL08 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C4VL08_9LACO
Length = 364
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ ++++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 273 DFIEDKDATS-PEQHASYEMLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 330
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 331 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[111][TOP]
>UniRef100_C4G971 RNA polymerase sigma factor n=1 Tax=Shuttleworthia satelles DSM
14600 RepID=C4G971_9FIRM
Length = 614
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ D+ + +P LKE++N++++ TL ERER+++ L +GL D + T EE+ K
Sbjct: 523 DFIQDENAP-VPAEAATFTLLKEQLNEVLD-TLTERERKVLILRFGLEDGRGRTLEEVGK 580
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 581 EFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 613
[112][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 59.3 bits (142), Expect = 2e-07
Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D + N P LKE++N ++ L ERE +++RL YGLD T EE+ K
Sbjct: 287 DFVEDDKFLN-PHEATVRSVLKEKLNDVLRKELNEREEQVLRLRYGLDDGAPKTLEEVGK 345
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + A+ KLK+ +KK LE
Sbjct: 346 IFDVTRERIRQIEVKAINKLKNIKKKKGLE 375
[113][TOP]
>UniRef100_C2FI52 RNA polymerase sigma factor n=2 Tax=Lactobacillus plantarum
RepID=C2FI52_LACPL
Length = 368
Score = 59.3 bits (142), Expect = 2e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEGVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKQLKDFL 367
[114][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
33200 RepID=C2E6R7_LACJO
Length = 372
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ ++++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 281 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 338
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 339 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 371
[115][TOP]
>UniRef100_C2E1K8 RNA polymerase sigma factor n=3 Tax=Lactobacillus jensenii
RepID=C2E1K8_9LACO
Length = 364
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ ++++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 273 DFIEDKDATS-PEQHASYEMLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 330
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 331 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 363
[116][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
RepID=Q042Y7_LACGA
Length = 373
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ ++++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 282 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 339
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 340 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 372
[117][TOP]
>UniRef100_B7AQM8 RNA polymerase sigma factor n=1 Tax=Bacteroides pectinophilus ATCC
43243 RepID=B7AQM8_9BACE
Length = 448
Score = 59.3 bits (142), Expect = 2e-07
Identities = 34/90 (37%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 336
Q +N+P + +E A LKE++ +++ TL ERE++++RL +GLD + T EE+ +
Sbjct: 360 QDDNVP-VPAEEAASTILKEQLVEVLG-TLTEREQKVLRLRFGLDDGRARTLEEVGREFN 417
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L L
Sbjct: 418 VTRERIRQIEAKALRKLRHPSRSRKLRDFL 447
[118][TOP]
>UniRef100_B0N062 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM
17216 RepID=B0N062_9BACT
Length = 286
Score = 59.3 bits (142), Expect = 2e-07
Identities = 30/78 (38%), Positives = 53/78 (67%)
Frame = -3
Query: 479 GVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLV 300
G+ +L EV++ + TL ERER+I++ ++G+ +T EEI ++ L+RERVRQ+
Sbjct: 209 GLINESLSTEVDRALE-TLTERERDIIKYFFGIGCSEMTLEEIGEKFDLTRERVRQIKEK 267
Query: 299 ALEKLKHAARKKELEAML 246
A+ +L+H++R K L++ L
Sbjct: 268 AIRRLRHSSRSKLLKSYL 285
[119][TOP]
>UniRef100_A2TVH6 Putative sigma factor A n=1 Tax=Dokdonia donghaensis MED134
RepID=A2TVH6_9FLAO
Length = 287
Score = 59.3 bits (142), Expect = 2e-07
Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+LK E+ + + TL RE ++VRLY+GL D++ ++ EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLKTEIERALE-TLTPREADVVRLYFGLGDQRPMSLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[120][TOP]
>UniRef100_UPI0001B41595 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus anthracis str.
A1055 RepID=UPI0001B41595
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[121][TOP]
>UniRef100_UPI0001851148 RNA polymerase sigma factor RpoD n=1 Tax=Bacillus coahuilensis m4-4
RepID=UPI0001851148
Length = 337
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 265 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 323
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 324 RHPSRSKRLKDFL 336
[122][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
Length = 316
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ ++++ TL ERE ++RL +GL D + T EE+ + G++RER+RQ+ AL KL
Sbjct: 244 LKEQLEEVLD-TLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRKL 302
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 303 RHPSRSKRLKDFL 315
[123][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
RepID=Q8EPY6_OCEIH
Length = 380
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 308 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 367 RHPSRSKRLKDFL 379
[124][TOP]
>UniRef100_Q65H81 RNA polymerase sigma factor n=1 Tax=Bacillus licheniformis ATCC
14580 RepID=Q65H81_BACLD
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[125][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
RepID=Q5WHD0_BACSK
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[126][TOP]
>UniRef100_C5D4R8 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
RepID=C5D4R8_GEOSW
Length = 374
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 361 RHPSRSKRLKDFL 373
[127][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
RepID=C4L3Z9_EXISA
Length = 364
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 292 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 350
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 351 RHPSRSKRLKDFL 363
[128][TOP]
>UniRef100_C3LKX1 RNA polymerase sigma factor n=2 Tax=Bacillus cereus group
RepID=C3LKX1_BACAC
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[129][TOP]
>UniRef100_C0ZB92 RNA polymerase sigma factor n=1 Tax=Brevibacillus brevis NBRC
100599 RepID=C0ZB92_BREBN
Length = 376
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 304 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 362
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 363 RHPSRSKRLKDFL 375
[130][TOP]
>UniRef100_B9IY60 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Q1
RepID=B9IY60_BACCQ
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[131][TOP]
>UniRef100_B8E0E4 RNA polymerase sigma factor n=1 Tax=Dictyoglomus turgidum DSM 6724
RepID=B8E0E4_DICTD
Length = 413
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+LK+++ +L+N L EREREI++L +GL D + T EE+ K ++RER+RQ+ AL +
Sbjct: 339 SLKKDIEELLN-ELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397
Query: 287 LKHAARKKELEAML 246
L+H +R K+++ L
Sbjct: 398 LRHPSRSKKIKDYL 411
[132][TOP]
>UniRef100_B7GH73 RNA polymerase sigma factor n=1 Tax=Anoxybacillus flavithermus WK1
RepID=B7GH73_ANOFW
Length = 372
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 359 RHPSRSKRLKDFL 371
[133][TOP]
>UniRef100_B5YES0 RNA polymerase sigma factor n=1 Tax=Dictyoglomus thermophilum
H-6-12 RepID=B5YES0_DICT6
Length = 413
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+LK+++ +L+N L EREREI++L +GL D + T EE+ K ++RER+RQ+ AL +
Sbjct: 339 SLKKDIEELLN-ELSEREREILKLRFGLEDNQPRTLEEVGKLFNVTRERIRQIEAKALRR 397
Query: 287 LKHAARKKELEAML 246
L+H +R K+++ L
Sbjct: 398 LRHPSRSKKIKDYL 411
[134][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
255-15 RepID=B1YL80_EXIS2
Length = 361
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 289 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 347
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 348 RHPSRSKRLKDFL 360
[135][TOP]
>UniRef100_B1HTI2 RNA polymerase sigma factor n=1 Tax=Lysinibacillus sphaericus C3-41
RepID=B1HTI2_LYSSC
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[136][TOP]
>UniRef100_A8FFA5 RNA polymerase sigma factor n=1 Tax=Bacillus pumilus SAFR-032
RepID=A8FFA5_BACP2
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[137][TOP]
>UniRef100_A7Z6T5 RNA polymerase sigma factor n=1 Tax=Bacillus amyloliquefaciens
FZB42 RepID=A7Z6T5_BACA2
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[138][TOP]
>UniRef100_A7HK63 RNA polymerase sigma factor n=1 Tax=Fervidobacterium nodosum
Rt17-B1 RepID=A7HK63_FERNB
Length = 372
Score = 58.9 bits (141), Expect = 3e-07
Identities = 33/92 (35%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+AD +S P ++EE++KL+ TL +RE++++++ YGL + K +T EE+ +
Sbjct: 276 DFIAD-ESIGSPKKEAIRTLMREEIDKLLE-TLNDREKKVLKMRYGLYNGKPMTLEEVGQ 333
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAM 249
G++RER+RQ+ + AL KL+H +R + L +
Sbjct: 334 FFGVTRERIRQIEVKALRKLRHPSRSRYLRLL 365
[139][TOP]
>UniRef100_A7GSY8 RNA polymerase sigma factor n=1 Tax=Bacillus cytotoxicus NVH 391-98
RepID=A7GSY8_BACCN
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[140][TOP]
>UniRef100_Q2B288 RNA polymerase sigma factor n=1 Tax=Bacillus sp. NRRL B-14911
RepID=Q2B288_9BACI
Length = 374
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 360
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 361 RHPSRSKRLKDFL 373
[141][TOP]
>UniRef100_O52862 RNA polymerase sigma factor (Fragment) n=1 Tax=Lysinibacillus
sphaericus RepID=O52862_BACSH
Length = 140
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 68 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 126
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 127 RHPSRSKRLKDFL 139
[142][TOP]
>UniRef100_C9AAM5 RNA polymerase sigma-43 factor n=3 Tax=Enterococcus casseliflavus
RepID=C9AAM5_ENTCA
Length = 368
Score = 58.9 bits (141), Expect = 3e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +G+D + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKQLKDFL 367
[143][TOP]
>UniRef100_C8ZYV7 RNA polymerase sigma-43 factor n=1 Tax=Enterococcus gallinarum EG2
RepID=C8ZYV7_ENTGA
Length = 368
Score = 58.9 bits (141), Expect = 3e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +G+D + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEDVLD-TLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKQLKDFL 367
[144][TOP]
>UniRef100_C6QPZ7 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. Y4.1MC1
RepID=C6QPZ7_9BACI
Length = 377
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 364 RHPSRSKRLKDFL 376
[145][TOP]
>UniRef100_C6JGK6 RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. 5_1_39BFAA
RepID=C6JGK6_9FIRM
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 336
Q +N+P + D A LKE++ ++++ TL +RE++++RL +GLD + T EE+ K
Sbjct: 287 QDDNVP-VPADAAAFTLLKEQLVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFN 344
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 345 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 374
[146][TOP]
>UniRef100_C4C6T9 RNA polymerase sigma factor n=1 Tax=Sebaldella termitidis ATCC
33386 RepID=C4C6T9_9FUSO
Length = 387
Score = 58.9 bits (141), Expect = 3e-07
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC-LTWEEISK 345
+FV D + N P+ LKE+++ ++ TL ERE ++R YGLD T EE+ K
Sbjct: 296 DFVEDDKFLN-PYDATTRVLLKEQLDGVLK-TLSEREEMVLRYRYGLDDGSPKTLEEVGK 353
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ + AL KL+H +R+K+LE
Sbjct: 354 IFNVTRERIRQIEVKALRKLRHPSRRKKLE 383
[147][TOP]
>UniRef100_C9RYK5 RNA polymerase, sigma 70 subunit, RpoD subfamily n=3
Tax=Geobacillus RepID=C9RYK5_9BACI
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[148][TOP]
>UniRef100_C3AQQ2 RNA polymerase sigma factor n=3 Tax=Bacillus RepID=C3AQQ2_BACMY
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[149][TOP]
>UniRef100_C2YWN0 RNA polymerase sigma factor n=1 Tax=Bacillus cereus AH1271
RepID=C2YWN0_BACCE
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[150][TOP]
>UniRef100_C2WC75 RNA polymerase sigma factor n=1 Tax=Bacillus cereus Rock3-44
RepID=C2WC75_BACCE
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[151][TOP]
>UniRef100_C2U2P5 RNA polymerase sigma factor n=3 Tax=Bacillus cereus
RepID=C2U2P5_BACCE
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[152][TOP]
>UniRef100_B7HCR6 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HCR6_BACC4
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[153][TOP]
>UniRef100_A9VHS1 RNA polymerase sigma factor n=7 Tax=Bacillus cereus group
RepID=A9VHS1_BACWK
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[154][TOP]
>UniRef100_C2PK08 RNA polymerase sigma factor n=1 Tax=Bacillus cereus MM3
RepID=C2PK08_BACCE
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[155][TOP]
>UniRef100_B7HPJ2 RNA polymerase sigma factor n=9 Tax=Bacillus cereus group
RepID=B7HPJ2_BACC7
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[156][TOP]
>UniRef100_C1TPF1 RNA polymerase sigma factor n=1 Tax=Dethiosulfovibrio peptidovorans
DSM 11002 RepID=C1TPF1_9BACT
Length = 381
Score = 58.9 bits (141), Expect = 3e-07
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L E++ +++ L +RERE++R +GL D + T EE+ +R G++RER+RQ+ AL KL
Sbjct: 309 LHEQIEDMLDA-LSDREREVLRYRFGLEDGRSYTLEEVGRRFGVTRERIRQIEAKALRKL 367
Query: 284 KHAARKKELEAML 246
+H +R K+L L
Sbjct: 368 RHPSRSKKLRDFL 380
[157][TOP]
>UniRef100_C1PEH1 RNA polymerase sigma factor n=1 Tax=Bacillus coagulans 36D1
RepID=C1PEH1_BACCO
Length = 377
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 305 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 363
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 364 RHPSRSKRLKDFL 376
[158][TOP]
>UniRef100_C0CQD9 RNA polymerase sigma factor n=1 Tax=Blautia hydrogenotrophica DSM
10507 RepID=C0CQD9_9FIRM
Length = 374
Score = 58.9 bits (141), Expect = 3e-07
Identities = 34/90 (37%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIG 336
Q +N+P + D A LKE++ ++++ TL +RE++++RL +GLD + T EE+ K
Sbjct: 286 QDDNVP-VPADAAAFTLLKEQLVEVLS-TLTDREQKVLRLRFGLDDGRARTLEEVGKEFN 343
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 344 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 373
[159][TOP]
>UniRef100_B7IYE3 RNA polymerase sigma factor n=13 Tax=Bacillus cereus group
RepID=B7IYE3_BACC2
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[160][TOP]
>UniRef100_B4CWV6 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428
RepID=B4CWV6_9BACT
Length = 671
Score = 58.9 bits (141), Expect = 3e-07
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = -3
Query: 530 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 354
++ +F+ DK +EN+ + LKE++ ++ TL ERER+++ +GL D T EE
Sbjct: 573 SFGDFIEDKGAENLSDMTAIV-LLKEKIKDVLE-TLTERERQVLEQRFGLVDGYSRTLEE 630
Query: 353 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH 237
+ ++ ++RER+RQ+ AL K++H R ++LE L H
Sbjct: 631 VGRQFKVTRERIRQIEAKALRKMRHPTRIRQLEGFLEAH 669
[161][TOP]
>UniRef100_A4IR10 RNA polymerase sigma factor n=2 Tax=Geobacillus RepID=A4IR10_GEOTN
Length = 375
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 303 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 361
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 362 RHPSRSKRLKDFL 374
[162][TOP]
>UniRef100_B0G307 RNA polymerase sigma factor n=1 Tax=Dorea formicigenerans ATCC
27755 RepID=B0G307_9FIRM
Length = 382
Score = 58.9 bits (141), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+D + T EE+ K ++RER+R
Sbjct: 300 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIR 358
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 359 QIEAKALRKLRHPSRSRKLRDYL 381
[163][TOP]
>UniRef100_A0RIR5 RNA polymerase sigma factor n=20 Tax=Bacillus cereus group
RepID=A0RIR5_BACAH
Length = 373
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 301 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 359
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 360 RHPSRSKRLKDFL 372
[164][TOP]
>UniRef100_A4CL98 Putative sigma factor A n=1 Tax=Robiginitalea biformata HTCC2501
RepID=A4CL98_9FLAO
Length = 287
Score = 58.9 bits (141), Expect = 3e-07
Identities = 32/74 (43%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L E+N+ + TL RE ++V+LYYG+ D++ +T EI + L+RERVRQ+ A+ K
Sbjct: 214 SLNTEINRALE-TLSPREADVVKLYYGIGDQQSMTLAEIGQTFDLTRERVRQIREKAIRK 272
Query: 287 LKHAARKKELEAML 246
L+H +R K L+A L
Sbjct: 273 LRHHSRSKLLKAYL 286
[165][TOP]
>UniRef100_P06224 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus subtilis
RepID=RPOD_BACSU
Length = 371
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 299 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 357
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 358 RHPSRSKRLKDFL 370
[166][TOP]
>UniRef100_O66381 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus halodurans
RepID=RPOD_BACHD
Length = 372
Score = 58.9 bits (141), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 359 RHPSRSKRLKDFL 371
[167][TOP]
>UniRef100_UPI000197B56E hypothetical protein BACCOPRO_00840 n=1 Tax=Bacteroides coprophilus
DSM 18228 RepID=UPI000197B56E
Length = 317
Score = 58.5 bits (140), Expect = 3e-07
Identities = 27/73 (36%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL ERE++I+++++G++ + +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 245 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 303
Query: 284 KHAARKKELEAML 246
+ +R K L++ L
Sbjct: 304 RQNSRSKLLKSYL 316
[168][TOP]
>UniRef100_UPI0000F53BBC RNA polymerase sigma factor RpoD n=1 Tax=Listeria monocytogenes FSL
J2-071 RepID=UPI0000F53BBC
Length = 374
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 361 RHPSRSKQLKDFL 373
[169][TOP]
>UniRef100_Q5M3E3 RNA polymerase sigma factor n=1 Tax=Streptococcus thermophilus LMG
18311 RepID=Q5M3E3_STRT2
Length = 369
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[170][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
JCSC1435 RepID=Q4L6R1_STAHJ
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[171][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[172][TOP]
>UniRef100_Q03JL2 RNA polymerase sigma factor n=2 Tax=Streptococcus thermophilus
RepID=Q03JL2_STRTD
Length = 369
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[173][TOP]
>UniRef100_O67464 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67464_AQUAE
Length = 575
Score = 58.5 bits (140), Expect = 3e-07
Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Frame = -3
Query: 533 DTY-HNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTW 360
DT+ +F+ DK N P V L+E++ K+++ TL E+EREI+ YGL D T
Sbjct: 479 DTFLKDFIEDKSIPN-PEEQVTRKLLREQLQKVLS-TLSEKEREILMYRYGLVDGTEYTL 536
Query: 359 EEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLF 243
E++ K ++RER+RQ+ AL KL+H AR K L+ F
Sbjct: 537 EQVGKMFNVTRERIRQIENKALRKLRHPARAKYLKDFEF 575
[174][TOP]
>UniRef100_A4J7B9 RNA polymerase sigma factor n=1 Tax=Desulfotomaculum reducens MI-1
RepID=A4J7B9_DESRM
Length = 367
Score = 58.5 bits (140), Expect = 3e-07
Identities = 28/73 (38%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L+E++++++ TL +RE++++RL +GLD + T EE+ ++ G++RER+RQ+ L KL
Sbjct: 295 LREQLDEVLK-TLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 353
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 354 RHPSRSKKLKDYL 366
[175][TOP]
>UniRef100_Q3D699 RNA polymerase sigma factor n=7 Tax=Streptococcus agalactiae
RepID=Q3D699_STRAG
Length = 369
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[176][TOP]
>UniRef100_Q3CZ52 RNA polymerase sigma factor n=1 Tax=Streptococcus agalactiae H36B
RepID=Q3CZ52_STRAG
Length = 369
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[177][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
RepID=O08332_STAAU
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[178][TOP]
>UniRef100_C8M7C3 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
A9299 RepID=C8M7C3_STAAU
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[179][TOP]
>UniRef100_C8LTM9 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus A6300 RepID=C8LTM9_STAAU
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[180][TOP]
>UniRef100_C8ACF1 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus 68-397 RepID=C8ACF1_STAAU
Length = 342
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 251 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 308
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 309 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 338
[181][TOP]
>UniRef100_C7ZXE7 Transcription initiation factor sigma plaC n=1 Tax=Staphylococcus
aureus subsp. aureus 55/2053 RepID=C7ZXE7_STAAU
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[182][TOP]
>UniRef100_C6VQS5 RNA polymerase sigma factor n=1 Tax=Lactobacillus plantarum JDM1
RepID=C6VQS5_LACPJ
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEGVLD-TLTNREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKQLKDFL 367
[183][TOP]
>UniRef100_C5QXG6 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
W23144 RepID=C5QXG6_STAEP
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[184][TOP]
>UniRef100_C5QSV2 RNA polymerase sigma factor n=1 Tax=Staphylococcus epidermidis
M23864:W1 RepID=C5QSV2_STAEP
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[185][TOP]
>UniRef100_C4WCC7 RNA polymerase sigma factor n=1 Tax=Staphylococcus warneri L37603
RepID=C4WCC7_STAWA
Length = 367
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 276 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 333
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 334 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 363
[186][TOP]
>UniRef100_C4EU48 RNA polymerase sigma factor n=1 Tax=Thermanaerovibrio
acidaminovorans DSM 6589 RepID=C4EU48_9BACT
Length = 387
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L+E++ +++ L +RE+E++RL +GL D T EE+ +R G++RER+RQ+ AL KL
Sbjct: 315 LREQLEEMLE-DLTDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKL 373
Query: 284 KHAARKKELEAML 246
+H +R K L L
Sbjct: 374 RHPSRSKRLRDFL 386
[187][TOP]
>UniRef100_C2M0X4 RNA polymerase sigma factor n=1 Tax=Staphylococcus hominis SK119
RepID=C2M0X4_STAHO
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[188][TOP]
>UniRef100_C2LRD4 RNA polymerase sigma factor n=1 Tax=Streptococcus salivarius SK126
RepID=C2LRD4_STRSL
Length = 369
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
++RER+RQ+ AL KL+H +R K+L+
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQLK 364
[189][TOP]
>UniRef100_C2C209 RNA polymerase sigma factor n=1 Tax=Listeria grayi DSM 20601
RepID=C2C209_LISGR
Length = 389
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 317 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 375
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 376 RHPSRSKQLKDFL 388
[190][TOP]
>UniRef100_C0YS93 RNA polymerase sigma-70 factor n=2 Tax=Chryseobacterium
RepID=C0YS93_9FLAO
Length = 288
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/74 (44%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + +N TL RE ++VRLY+GL+ K +T EEI + L+RERVRQ+ A+++
Sbjct: 214 SLQIEIERALN-TLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKR 272
Query: 287 LKHAARKKELEAML 246
LKH R K L++ L
Sbjct: 273 LKHNTRSKILKSYL 286
[191][TOP]
>UniRef100_C0C397 RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053
RepID=C0C397_9CLOT
Length = 370
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+ D + T EE+ K ++RER+R
Sbjct: 288 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 346
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 347 QIEAKALRKLRHPSRSRKLRDYL 369
[192][TOP]
>UniRef100_C0BBA6 RNA polymerase sigma factor n=1 Tax=Coprococcus comes ATCC 27758
RepID=C0BBA6_9FIRM
Length = 371
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+ D + T EE+ K ++RER+R
Sbjct: 289 VPAEAAAQTLLKEQLDEVLS-TLTEREQKVLRLRFGMSDGRARTLEEVGKEFDVTRERIR 347
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 348 QIEAKALRKLRHPSRSRKLRDYL 370
[193][TOP]
>UniRef100_B9CVA9 RNA polymerase sigma factor n=1 Tax=Staphylococcus capitis SK14
RepID=B9CVA9_STACP
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[194][TOP]
>UniRef100_B5JG90 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium
DG1235 RepID=B5JG90_9BACT
Length = 576
Score = 58.5 bits (140), Expect = 3e-07
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Frame = -3
Query: 527 YHNFVADKQSENIPWIGVDEWALKEEVNKLINV--TLVEREREIVRLYYGL-DKKCLTWE 357
+ +F+ DK +EN P+ D+ A K+I+V +L ERER ++ L +GL D T E
Sbjct: 460 FGDFIEDKSAEN-PY---DQTAFSLLREKIIDVLDSLTERERRVLSLRFGLVDGYSRTLE 515
Query: 356 EISKRIGLSRERVRQVGLVALEKLKHAARKKELEAMLFEH*YDG 225
E+ K+ ++RER+RQ+ AL K++H R ++L +DG
Sbjct: 516 EVGKQFKVTRERIRQIEAKALRKMRHPTRIRQLHGFFENEQFDG 559
[195][TOP]
>UniRef100_B3JJS2 Putative uncharacterized protein n=2 Tax=Bacteroides
RepID=B3JJS2_9BACE
Length = 286
Score = 58.5 bits (140), Expect = 3e-07
Identities = 27/73 (36%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL ERE++I+++++G++ + +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 214 SLSREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 284 KHAARKKELEAML 246
+ +R K L++ L
Sbjct: 273 RQNSRSKLLKSYL 285
[196][TOP]
>UniRef100_B0NBC7 RNA polymerase sigma factor n=1 Tax=Clostridium scindens ATCC 35704
RepID=B0NBC7_EUBSP
Length = 371
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+ D + T EE+ K ++RER+R
Sbjct: 289 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 347
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 348 QIEAKALRKLRHPSRSRKLRDYL 370
[197][TOP]
>UniRef100_A7AZ88 RNA polymerase sigma factor n=1 Tax=Ruminococcus gnavus ATCC 29149
RepID=A7AZ88_RUMGN
Length = 371
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+ D + T EE+ K ++RER+R
Sbjct: 289 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 347
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 348 QIEAKALRKLRHPSRSRKLRDYL 370
[198][TOP]
>UniRef100_A6BEL2 RNA polymerase sigma factor n=1 Tax=Dorea longicatena DSM 13814
RepID=A6BEL2_9FIRM
Length = 369
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+ D + T EE+ K ++RER+R
Sbjct: 287 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 345
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 346 QIEAKALRKLRHPSRSRKLRDYL 368
[199][TOP]
>UniRef100_A5KQA4 RNA polymerase sigma factor n=1 Tax=Ruminococcus torques ATCC 27756
RepID=A5KQA4_9FIRM
Length = 383
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/83 (36%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 491 IPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVR 315
+P + LKE+++++++ TL ERE++++RL +G+ D + T EE+ K ++RER+R
Sbjct: 301 VPAEAAAQTLLKEQLDEVLD-TLTEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIR 359
Query: 314 QVGLVALEKLKHAARKKELEAML 246
Q+ AL KL+H +R ++L L
Sbjct: 360 QIEAKALRKLRHPSRSRKLRDYL 382
[200][TOP]
>UniRef100_Q5HNY7 RNA polymerase sigma factor rpoD n=3 Tax=Staphylococcus epidermidis
RepID=RPOD_STAEQ
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[201][TOP]
>UniRef100_Q99TT5 RNA polymerase sigma factor rpoD n=1 Tax=Staphylococcus aureus
subsp. aureus N315 RepID=RPOD_STAAN
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[202][TOP]
>UniRef100_P0A0J0 RNA polymerase sigma factor rpoD n=31 Tax=Staphylococcus aureus
RepID=RPOD_STAA8
Length = 368
Score = 58.5 bits (140), Expect = 3e-07
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+++++ P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 277 DFIEDQEAQS-PSDHAAYELLKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R K L+
Sbjct: 335 VFGVTRERIRQIEAKALRKLRHPSRSKRLK 364
[203][TOP]
>UniRef100_P52331 RNA polymerase sigma factor rpoD n=9 Tax=Listeria monocytogenes
RepID=RPOD_LISMO
Length = 374
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 361 RHPSRSKQLKDFL 373
[204][TOP]
>UniRef100_Q92BQ6 RNA polymerase sigma factor rpoD n=3 Tax=Listeria RepID=RPOD_LISIN
Length = 374
Score = 58.5 bits (140), Expect = 3e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 302 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKL 360
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 361 RHPSRSKQLKDFL 373
[205][TOP]
>UniRef100_Q8P1I9 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M18 RepID=Q8P1I9_STRP8
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[206][TOP]
>UniRef100_Q8K811 RNA polymerase sigma factor n=1 Tax=Streptococcus pyogenes serotype
M3 RepID=Q8K811_STRP3
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[207][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
Y51 RepID=Q24T06_DESHY
Length = 367
Score = 58.2 bits (139), Expect = 4e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL RE +++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 295 LKEQLEEVLE-TLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 353
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 354 RHPSRSKKLKDYL 366
[208][TOP]
>UniRef100_C5WFT4 RNA polymerase sigma factor n=1 Tax=Streptococcus dysgalactiae
subsp. equisimilis GGS_124 RepID=C5WFT4_STRDG
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[209][TOP]
>UniRef100_C0MGY0 RNA polymerase sigma factor n=1 Tax=Steptococcus equi subsp.
zooepidemicus H70 RepID=C0MGY0_STRS7
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[210][TOP]
>UniRef100_C0M883 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp. equi
4047 RepID=C0M883_STRE4
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[211][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
JCSC5402 RepID=B9E6V2_MACCJ
Length = 366
Score = 58.2 bits (139), Expect = 4e-07
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 294 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 352
Query: 284 KHAARKKELE 255
+H +R K L+
Sbjct: 353 RHPSRSKRLK 362
[212][TOP]
>UniRef100_B9DRV6 RNA polymerase sigma factor n=1 Tax=Streptococcus uberis 0140J
RepID=B9DRV6_STRU0
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[213][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
carnosus TM300 RepID=B9DNN2_STACT
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 297 LKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 355
Query: 284 KHAARKKELE 255
+H +R K L+
Sbjct: 356 RHPSRSKRLK 365
[214][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
DCB-2 RepID=B8FTY1_DESHD
Length = 372
Score = 58.2 bits (139), Expect = 4e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL RE +++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 300 LKEQLEEVLE-TLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 359 RHPSRSKKLKDYL 371
[215][TOP]
>UniRef100_B4U2H7 RNA polymerase sigma factor n=1 Tax=Streptococcus equi subsp.
zooepidemicus MGCS10565 RepID=B4U2H7_STREM
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[216][TOP]
>UniRef100_B2UM02 RNA polymerase sigma factor n=1 Tax=Akkermansia muciniphila ATCC
BAA-835 RepID=B2UM02_AKKM8
Length = 688
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = -3
Query: 530 TYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEE 354
++ +F+ DK +EN P LKE++ +++ TL +RERE++ +GL D T EE
Sbjct: 590 SFGDFIEDKAAEN-PMEEASFSFLKEKIKDVLD-TLTDREREVIEQRFGLRDGSPRTLEE 647
Query: 353 ISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ ++ ++RER+RQ+ AL KL+H R +++ L
Sbjct: 648 VGRQFSVTRERIRQIEAKALRKLRHPTRISKIKGFL 683
[217][TOP]
>UniRef100_A6H187 RNA polymerase sigma-70 factor RpoD n=1 Tax=Flavobacterium
psychrophilum JIP02/86 RepID=A6H187_FLAPJ
Length = 287
Score = 58.2 bits (139), Expect = 4e-07
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE ++VRLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERSLE-TLTPREADVVRLYFGLADQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[218][TOP]
>UniRef100_A2RFA3 RNA polymerase sigma factor n=9 Tax=Streptococcus pyogenes
RepID=A2RFA3_STRPG
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[219][TOP]
>UniRef100_A0LYB9 RNA polymerase sigma-70 factor n=1 Tax=Gramella forsetii KT0803
RepID=A0LYB9_GRAFK
Length = 287
Score = 58.2 bits (139), Expect = 4e-07
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE +++RLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERALE-TLTPREADVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[220][TOP]
>UniRef100_A5FK06 RNA polymerase, sigma 70 subunit, RpoD family n=2
Tax=Flavobacterium johnsoniae RepID=A5FK06_FLAJ1
Length = 287
Score = 58.2 bits (139), Expect = 4e-07
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE ++VRLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLRTEIERSLE-TLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[221][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
degensii KC4 RepID=C9R939_9THEO
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 31/93 (33%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D++++ P L+E++N+++ +L RE++++RL +GLD + T EE+ +
Sbjct: 278 DFIEDQEAQ-APAEEASYALLREQLNEVLQ-SLTPREQKVLRLRFGLDDGRARTLEEVGQ 335
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
+ G++RER+RQ+ L KL+H +R K+L+ L
Sbjct: 336 KFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368
[222][TOP]
>UniRef100_C6I5X7 RpoD n=3 Tax=Bacteroides RepID=C6I5X7_9BACE
Length = 286
Score = 58.2 bits (139), Expect = 4e-07
Identities = 27/73 (36%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL +RE+EI+++++G+ ++ +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 284 KHAARKKELEAML 246
+ + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[223][TOP]
>UniRef100_C2EK73 RNA polymerase sigma factor n=1 Tax=Lactobacillus ultunensis DSM
16047 RepID=C2EK73_9LACO
Length = 370
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELE 255
G++RER+RQ+ AL KL+H +R +L+
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQLK 366
[224][TOP]
>UniRef100_C0UV59 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UV59_9BACT
Length = 338
Score = 58.2 bits (139), Expect = 4e-07
Identities = 38/102 (37%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = -3
Query: 545 GLPGDT-YHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDKKC 369
G GD+ F+ D +E + + E LK E++K++N +L E+ER+++ L YGL+
Sbjct: 238 GTDGDSSLGQFIPDSTTETPVDLAIGE-VLKRELSKVLN-SLTEKERKVMVLRYGLEGSS 295
Query: 368 L-TWEEISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
T EE+ R+G++RERVRQ+ ALEKL+ + L L
Sbjct: 296 PHTLEEVGHRLGVTRERVRQIEAKALEKLRKPGKLNHLRDFL 337
[225][TOP]
>UniRef100_C0FXF0 RNA polymerase sigma factor n=1 Tax=Roseburia inulinivorans DSM
16841 RepID=C0FXF0_9FIRM
Length = 426
Score = 58.2 bits (139), Expect = 4e-07
Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 4/90 (4%)
Frame = -3
Query: 503 QSENIPWIGVDEWA---LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIG 336
Q +N+P + D A LKE++ +++ TL ERE++++ L +GL D + T EE+ K
Sbjct: 338 QDDNVP-VPADAAAFTLLKEQLEEVLG-TLTEREQKVLTLRFGLEDGRARTLEEVGKEFN 395
Query: 335 LSRERVRQVGLVALEKLKHAARKKELEAML 246
++RER+RQ+ AL KL+H +R ++L+ L
Sbjct: 396 VTRERIRQIEAKALRKLRHPSRSRKLKDYL 425
[226][TOP]
>UniRef100_A6L3X4 RNA polymerase sigma factor rpoD n=5 Tax=Bacteroides
RepID=A6L3X4_BACV8
Length = 286
Score = 58.2 bits (139), Expect = 4e-07
Identities = 27/73 (36%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL ERE++I+++++G++ + +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTEREKDIIQMFFGINTQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 284 KHAARKKELEAML 246
+ +R K L++ L
Sbjct: 273 RQNSRSKLLKSYL 285
[227][TOP]
>UniRef100_B3CB36 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis
DSM 17393 RepID=B3CB36_9BACE
Length = 286
Score = 58.2 bits (139), Expect = 4e-07
Identities = 27/73 (36%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL +RE+EI+++++G+ ++ +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 284 KHAARKKELEAML 246
+ + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[228][TOP]
>UniRef100_B1SG84 RNA polymerase sigma factor n=1 Tax=Streptococcus infantarius
subsp. infantarius ATCC BAA-102 RepID=B1SG84_9STRE
Length = 369
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ D+ EN P L+E+++++++ TL +RE ++RL +GLD K T E++ K
Sbjct: 277 DFIEDEVIEN-PVDYTTRVVLREQLDEVLD-TLTDREENVLRLRFGLDDGKMRTLEDVGK 334
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
++RER+RQ+ AL KL+H +R K+L
Sbjct: 335 VFNVTRERIRQIEAKALRKLRHPSRSKQL 363
[229][TOP]
>UniRef100_A8VUB1 RNA polymerase sigma factor n=1 Tax=Bacillus selenitireducens MLS10
RepID=A8VUB1_9BACI
Length = 73
Score = 58.2 bits (139), Expect = 4e-07
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+KE++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 1 MKEQLEDVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 59
Query: 284 KHAARKKELEAML 246
+H +R K L+ L
Sbjct: 60 RHPSRSKRLKDFL 72
[230][TOP]
>UniRef100_C3R1S4 RNA polymerase sigma factor rpoD n=9 Tax=Bacteroides
RepID=C3R1S4_9BACE
Length = 286
Score = 58.2 bits (139), Expect = 4e-07
Identities = 27/73 (36%), Positives = 53/73 (72%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGLDKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+L E+++ ++ TL +RE+EI+++++G+ ++ +T EEI + GL+RERVRQ+ A+ +L
Sbjct: 214 SLAREIDRALS-TLTDREKEIIQMFFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRL 272
Query: 284 KHAARKKELEAML 246
+ + R K L++ L
Sbjct: 273 RQSNRSKLLKSYL 285
[231][TOP]
>UniRef100_A3J4K9 RNA polymerase sigma-70 factor n=1 Tax=Flavobacteria bacterium
BAL38 RepID=A3J4K9_9FLAO
Length = 287
Score = 58.2 bits (139), Expect = 4e-07
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = -3
Query: 464 ALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEK 288
+L+ E+ + + TL RE ++VRLY+GL D+ +T EEI + L+RERVRQ+ A+ +
Sbjct: 214 SLQTEIERALE-TLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRR 272
Query: 287 LKHAARKKELEAML 246
LKH +R K L+ L
Sbjct: 273 LKHTSRSKILKTYL 286
[232][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
Nor1 RepID=A1HPB3_9FIRM
Length = 368
Score = 58.2 bits (139), Expect = 4e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL RE +++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 296 LKEQLEEVLE-TLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKL 354
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 355 RHPSRSKKLKDFL 367
[233][TOP]
>UniRef100_UPI0001BB60BF RNA polymerase sigma-70 factor n=1 Tax=Blattabacterium sp.
(Blattella germanica) str. Bge RepID=UPI0001BB60BF
Length = 287
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/78 (37%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Frame = -3
Query: 476 VDEWALKEEVNKLINVTLVEREREIVRLYYGLD-KKCLTWEEISKRIGLSRERVRQVGLV 300
+++ +L++++ +++ TL ERER ++ L++GL+ +T EE+ + L+RERVRQ+ +
Sbjct: 210 LEKESLRKDIKRILE-TLSERERRVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQIESI 268
Query: 299 ALEKLKHAARKKELEAML 246
AL++LKH++R K L+ L
Sbjct: 269 ALKRLKHSSRSKILKPYL 286
[234][TOP]
>UniRef100_UPI00016C45A8 transcription initiation factor sigma 70 n=1 Tax=Gemmata
obscuriglobus UQM 2246 RepID=UPI00016C45A8
Length = 556
Score = 57.8 bits (138), Expect = 6e-07
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Frame = -3
Query: 533 DTYHNFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWE 357
D+Y + S P LK+++ ++ TL REREI++L YGL D T E
Sbjct: 453 DSYFGDFIEDNSVESPVNAATNEMLKDKIEGVLK-TLTYREREIIKLRYGLGDGYTYTLE 511
Query: 356 EISKRIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
E+ + ++RERVRQ+ A+ KL+H R ++LE L
Sbjct: 512 EVGRIFKVTRERVRQIEAKAVRKLQHPVRSRQLEGFL 548
[235][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
audaxviator MP104C RepID=B1I1U1_DESAP
Length = 360
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L+E+++ ++ TL ERE+ ++RL +GLD + T EE+ + G++RER+RQ+ L KL
Sbjct: 288 LREQLDDVLK-TLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKL 346
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 347 RHPSRSKKLKDYL 359
[236][TOP]
>UniRef100_B0TG57 RNA polymerase sigma factor n=1 Tax=Heliobacterium modesticaldum
Ice1 RepID=B0TG57_HELMI
Length = 371
Score = 57.8 bits (138), Expect = 6e-07
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ +++ TL RE +++RL +GLD + T EE+ + G++RER+RQ+ AL KL
Sbjct: 299 LKEQLEEVLE-TLTAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKL 357
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 358 RHPSRSKKLKDYL 370
[237][TOP]
>UniRef100_A8YVM2 RNA polymerase sigma factor n=1 Tax=Lactobacillus helveticus DPC
4571 RepID=A8YVM2_LACH4
Length = 356
Score = 57.8 bits (138), Expect = 6e-07
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 265 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 322
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
G++RER+RQ+ AL KL+H +R +L
Sbjct: 323 VFGVTRERIRQIEAKALRKLRHPSRSNQL 351
[238][TOP]
>UniRef100_A8MG96 RNA polymerase sigma factor n=1 Tax=Alkaliphilus oremlandii OhILAs
RepID=A8MG96_ALKOO
Length = 372
Score = 57.8 bits (138), Expect = 6e-07
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ ++++ TL RE++++RL +GLD + T EE+ K+ ++RER+RQ+ AL KL
Sbjct: 300 LKEQLVEVLD-TLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 359 RHPSRSKKLKDYL 371
[239][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
QYMF RepID=A6TSG9_ALKMQ
Length = 372
Score = 57.8 bits (138), Expect = 6e-07
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++ ++++ TL RE++++RL +GLD + T EE+ K+ ++RER+RQ+ AL KL
Sbjct: 300 LKEQLIEVLD-TLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 359 RHPSRSKKLKDYL 371
[240][TOP]
>UniRef100_C9LZ42 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus helveticus
DSM 20075 RepID=C9LZ42_LACHE
Length = 370
Score = 57.8 bits (138), Expect = 6e-07
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
G++RER+RQ+ AL KL+H +R +L
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQL 365
[241][TOP]
>UniRef100_C8W3K2 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfotomaculum acetoxidans DSM 771
RepID=C8W3K2_9FIRM
Length = 359
Score = 57.8 bits (138), Expect = 6e-07
Identities = 28/73 (38%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
L+E+++ ++ TL +RE++++RL +GLD + T EE+ ++ G++RER+RQ+ L KL
Sbjct: 287 LREQLDDVLK-TLTDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKL 345
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 346 RHPSRSKKLKDYL 358
[242][TOP]
>UniRef100_C8PAI1 RNA polymerase sigma factor rpoD n=1 Tax=Lactobacillus iners DSM
13335 RepID=C8PAI1_9LACO
Length = 382
Score = 57.8 bits (138), Expect = 6e-07
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ DK + + P LKE++ ++++ TL +RE ++RL +GL D + T EE+ +
Sbjct: 291 DFIEDKDATS-PEQHASYELLKEQLEEVLD-TLTDREENVLRLRFGLNDGRTRTLEEVGR 348
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ AL KL+H +R +L+ L
Sbjct: 349 VFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 381
[243][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
RepID=C8P839_9LACO
Length = 380
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+K+++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 308 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 367 RHPSRSKQLKDFL 379
[244][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
101-4-CHN RepID=C7XU09_9LACO
Length = 381
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+K+++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 309 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 367
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 368 RHPSRSKQLKDFL 380
[245][TOP]
>UniRef100_C5NX65 RNA polymerase sigma factor n=1 Tax=Gemella haemolysans ATCC 10379
RepID=C5NX65_9BACL
Length = 361
Score = 57.8 bits (138), Expect = 6e-07
Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISK 345
+F+ DK++++ +E LKE++ +++ TL +RE +++L +GL D K T EE+
Sbjct: 270 DFIEDKEAQSPVEHAANE-LLKEQLEEILE-TLTDREENVLKLRFGLKDGKTHTLEEVGS 327
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKELEAML 246
G++RER+RQ+ A+ KLKH ++ +L+ +
Sbjct: 328 AFGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360
[246][TOP]
>UniRef100_C4V565 RNA polymerase sigma factor n=1 Tax=Selenomonas flueggei ATCC 43531
RepID=C4V565_9FIRM
Length = 382
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/70 (41%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGL-DKKCLTWEEISKRIGLSRERVRQVGLVALEKL 285
LKE++++++ TL RE E++RL +GL D + T EE+ + G++RER+RQ+ AL KL
Sbjct: 309 LKEQISEVLT-TLAPREAEVLRLRFGLVDGRSRTLEEVGQNFGVTRERIRQIEAKALRKL 367
Query: 284 KHAARKKELE 255
+H R ++L+
Sbjct: 368 RHPVRLRKLQ 377
[247][TOP]
>UniRef100_C2KFH9 RNA polymerase sigma factor n=4 Tax=Lactobacillus crispatus
RepID=C2KFH9_9LACO
Length = 370
Score = 57.8 bits (138), Expect = 6e-07
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
G++RER+RQ+ AL KL+H +R +L
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQL 365
[248][TOP]
>UniRef100_C2HPX4 RNA polymerase sigma factor n=2 Tax=Lactobacillus acidophilus
RepID=C2HPX4_LACAC
Length = 370
Score = 57.8 bits (138), Expect = 6e-07
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Frame = -3
Query: 521 NFVADKQSENIPWIGVDEWALKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISK 345
+F+ DK + + P LKE++ +++ TL +RE ++RL +GLD + T EE+ K
Sbjct: 279 DFIEDKDATS-PEQHASYEMLKEQLEQVLE-TLTDREENVLRLRFGLDDGRTRTLEEVGK 336
Query: 344 RIGLSRERVRQVGLVALEKLKHAARKKEL 258
G++RER+RQ+ AL KL+H +R +L
Sbjct: 337 VFGVTRERIRQIEAKALRKLRHPSRSNQL 365
[249][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
RepID=C2EX53_LACRE
Length = 380
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+K+++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 308 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 367 RHPSRSKQLKDFL 379
[250][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
49540 RepID=C2ESB4_9LACO
Length = 380
Score = 57.8 bits (138), Expect = 6e-07
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Frame = -3
Query: 461 LKEEVNKLINVTLVEREREIVRLYYGLDK-KCLTWEEISKRIGLSRERVRQVGLVALEKL 285
+K+++ +++ TL +RE ++RL +GLD + T EE+ K G++RER+RQ+ AL KL
Sbjct: 308 MKKQLENVLD-TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL 366
Query: 284 KHAARKKELEAML 246
+H +R K+L+ L
Sbjct: 367 RHPSRSKQLKDFL 379