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[1][TOP]
>UniRef100_A2Q2Z5 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=A2Q2Z5_MEDTR
Length = 248
Score = 304 bits (778), Expect = 4e-81
Identities = 154/188 (81%), Positives = 170/188 (90%)
Frame = +2
Query: 17 ENGTTHTEPTPMEIQNGNADSTPQPPQEPPKCLITKLDNGTIESHRYYLSRKTTLEMLKD 196
+NGTT T T MEI+NG+ + PQ QE P+CL TK DNG+IESHRYYLSR+T LEMLKD
Sbjct: 9 QNGTTETAITTMEIENGDITTQPQL-QEQPQCLFTKKDNGSIESHRYYLSRRTVLEMLKD 67
Query: 197 RGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVR 376
RGYSIPSDEIQ SLD+FRQIHGQSPDVDRLR TATH T+PSKRILV+F+GPGIVKVN VR
Sbjct: 68 RGYSIPSDEIQLSLDDFRQIHGQSPDVDRLRLTATHATNPSKRILVVFSGPGIVKVNGVR 127
Query: 377 NIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFQITDLLVNVTKHVLKPKHQ 556
+IAGQIVNR++LTGLILIVQNQITSQALKA+NLL+FKVEIFQITDLLVN TKHVLKPKHQ
Sbjct: 128 DIAGQIVNRESLTGLILIVQNQITSQALKAVNLLSFKVEIFQITDLLVNATKHVLKPKHQ 187
Query: 557 VLTDKQKK 580
VLTDKQKK
Sbjct: 188 VLTDKQKK 195
[2][TOP]
>UniRef100_C6SXN9 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXN9_SOYBN
Length = 237
Score = 248 bits (634), Expect = 2e-64
Identities = 122/156 (78%), Positives = 136/156 (87%)
Frame = +2
Query: 110 CLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR 289
CL +DNG++ESHRYYLSR+TTLEMLKDRGYSIPS EI SL +FR IHGQ PD DRLR
Sbjct: 28 CLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDIHGQFPDPDRLR 87
Query: 290 FTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+ TH T+ SKRILVIF GPG+VKV +RN AGQI+NRDTLTGLILIV+N ITSQALKA+
Sbjct: 88 LSLTHATNSSKRILVIFCGPGVVKVTAIRNTAGQIINRDTLTGLILIVENHITSQALKAV 147
Query: 470 NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
NL +FKVEIFQITDLLVN+TKHVLKPKHQVLTDKQK
Sbjct: 148 NLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQK 183
[3][TOP]
>UniRef100_B9ST46 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9ST46_RICCO
Length = 238
Score = 241 bits (616), Expect = 2e-62
Identities = 122/192 (63%), Positives = 154/192 (80%), Gaps = 2/192 (1%)
Frame = +2
Query: 11 MAENGTTHTEPTPMEIQNGNA-DSTPQPPQEP-PKCLITKLDNGTIESHRYYLSRKTTLE 184
M ENG T NGN D++ + E KC + D+GT E+HRYYLSR+T LE
Sbjct: 1 MEENGVTAAV-------NGNGTDASERFNMEGLGKCFSSYADDGTHETHRYYLSRRTVLE 53
Query: 185 MLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTGPGIVKV 364
ML+DRGYS+PS EI SL EFR IHG +PD+DRL+F+ATHT+DPSKR+LV+F GPGI+KV
Sbjct: 54 MLRDRGYSVPSSEIDLSLQEFRAIHGPNPDIDRLKFSATHTSDPSKRMLVLFGGPGIIKV 113
Query: 365 NVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFQITDLLVNVTKHVLK 544
+ +R IAGQIVN+D+LTGLIL++QNQIT+QA+KA++L FKVE+FQITDLLVN+TKHVLK
Sbjct: 114 STIRAIAGQIVNKDSLTGLILVLQNQITNQAMKAVDLFKFKVEMFQITDLLVNITKHVLK 173
Query: 545 PKHQVLTDKQKK 580
PKHQVLTD++K+
Sbjct: 174 PKHQVLTDREKQ 185
[4][TOP]
>UniRef100_B9IHS9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IHS9_POPTR
Length = 216
Score = 217 bits (553), Expect = 5e-55
Identities = 101/158 (63%), Positives = 135/158 (85%)
Frame = +2
Query: 107 KCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRL 286
+CL + +D G+ ESHRYYLSR+T LEMLKDRGYS+PS EI SL +FR ++GQ+PD++ L
Sbjct: 6 RCLSSFVDEGSTESHRYYLSRRTVLEMLKDRGYSVPSSEIDISLQDFRGVYGQNPDIELL 65
Query: 287 RFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKA 466
+F+ATH +DPSKR+LVIF G G+VKV ++R I QI +RD+LTGLIL++QN IT+QA+KA
Sbjct: 66 KFSATHKSDPSKRMLVIFCGLGVVKVGMIRLITVQITDRDSLTGLILVLQNNITNQAMKA 125
Query: 467 INLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
++L FK+EIFQITDLLVN+TKH+LKPKHQVL+++ K+
Sbjct: 126 LDLFKFKIEIFQITDLLVNITKHILKPKHQVLSEQAKQ 163
[5][TOP]
>UniRef100_A7QJL2 Chromosome chr8 scaffold_106, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7QJL2_VITVI
Length = 229
Score = 211 bits (536), Expect = 4e-53
Identities = 103/160 (64%), Positives = 132/160 (82%)
Frame = +2
Query: 98 EPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV 277
E +CL + +D G IESHRYYL+R+T LEML+DRGYSIP+ +I SL +FR + Q PD
Sbjct: 16 EVKRCLSSFVDEGRIESHRYYLARRTLLEMLRDRGYSIPALDIDISLQDFRSFYSQKPDP 75
Query: 278 DRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQA 457
DRLR +A +DPSK+ILVIF GP +VKVN +R+IA QIVN+D+L+ LIL++QN ITSQA
Sbjct: 76 DRLRISAALRSDPSKKILVIFCGPDVVKVNAIRSIATQIVNKDSLSKLILVLQNHITSQA 135
Query: 458 LKAINLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
LKA++L +F+VE FQITDLLVN+TKHVLKPKH+VLTD++K
Sbjct: 136 LKAVDLFSFQVEKFQITDLLVNITKHVLKPKHRVLTDQEK 175
[6][TOP]
>UniRef100_Q9LKX4 RPB5d n=1 Tax=Brassica napus RepID=Q9LKX4_BRANA
Length = 223
Score = 190 bits (482), Expect = 8e-47
Identities = 86/156 (55%), Positives = 124/156 (79%)
Frame = +2
Query: 113 LITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRF 292
L LD ++SH YYL+R+TT+EML+DRGY I +++I +L EFR ++G P+VDRLR
Sbjct: 14 LSKSLDESRVDSHSYYLARRTTMEMLRDRGYDISNEDINLTLQEFRALYGDRPNVDRLRI 73
Query: 293 TATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAIN 472
+A H +D SK+I V+F G GIVKV+ +R+IA ++ R+ LTGLIL++Q+ IT+QALKA+
Sbjct: 74 SAQHCSDSSKKIAVVFCGSGIVKVSAIRDIAADVLGRENLTGLILVLQSDITNQALKAVE 133
Query: 473 LLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
L +FKVE+FQ+T+LLVN+TKHVL+PKH VL +++K+
Sbjct: 134 LFSFKVELFQLTELLVNITKHVLRPKHHVLNEQEKE 169
[7][TOP]
>UniRef100_Q9ZVB9 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q9ZVB9_ARATH
Length = 218
Score = 189 bits (481), Expect = 1e-46
Identities = 86/152 (56%), Positives = 122/152 (80%)
Frame = +2
Query: 125 LDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATH 304
+ ++E H+YYL+R+TT+EML+DRGY + ++I SL +FR ++G+ PDVD LR +A H
Sbjct: 14 ISKSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPDVDLLRISAKH 73
Query: 305 TTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNF 484
D SK+I V+F G GIVKVN +R IA +++R+ +TGLIL++Q+ IT+QALKA+ L +F
Sbjct: 74 RFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSF 133
Query: 485 KVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
KVE+F+ITDLLVNV+KHVL+PKHQVL DK+K+
Sbjct: 134 KVELFEITDLLVNVSKHVLRPKHQVLNDKEKE 165
[8][TOP]
>UniRef100_Q9M1J2 Putative uncharacterized protein F24I3.160 n=1 Tax=Arabidopsis
thaliana RepID=Q9M1J2_ARATH
Length = 222
Score = 189 bits (479), Expect = 2e-46
Identities = 85/156 (54%), Positives = 123/156 (78%)
Frame = +2
Query: 110 CLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR 289
CL +D + ESHRYYL+R+ L+ML+DRGY + ++I SL +FR ++G+ PDVDRLR
Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72
Query: 290 FTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+A H +D +K++ ++F G +VKVN +R++ I++++T+TGLIL++QN +T+QALKAI
Sbjct: 73 ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132
Query: 470 NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
L +FKVEIFQITDLLVN+TKH LKP+HQVL D++K
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEK 168
[9][TOP]
>UniRef100_Q8L947 Putative DNA-directed RNA polymerase 23kD subunit n=1
Tax=Arabidopsis thaliana RepID=Q8L947_ARATH
Length = 222
Score = 187 bits (475), Expect = 5e-46
Identities = 84/156 (53%), Positives = 123/156 (78%)
Frame = +2
Query: 110 CLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR 289
CL +D + ESHRYYL+R+ L++L+DRGY + ++I SL +FR ++G+ PDVDRLR
Sbjct: 13 CLSKYVDLSSEESHRYYLARRNGLQILRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72
Query: 290 FTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+A H +D +K++ ++F G +VKVN +R++ I++++T+TGLIL++QN +T+QALKAI
Sbjct: 73 ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132
Query: 470 NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
L +FKVEIFQITDLLVN+TKH LKP+HQVL D++K
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEK 168
[10][TOP]
>UniRef100_B9GM22 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GM22_POPTR
Length = 233
Score = 166 bits (419), Expect = 2e-39
Identities = 80/158 (50%), Positives = 114/158 (72%)
Frame = +2
Query: 107 KCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRL 286
+CL +D G+ ES+RYY+SR+T LEMLKDRGY + E+ RSL EFR + G SPD+D L
Sbjct: 23 RCLTDFVDEGSAESYRYYISRRTVLEMLKDRGYDVLDSELNRSLTEFRSVFGNSPDLDSL 82
Query: 287 RFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKA 466
RF+ + + P K+ LV+F G +K +R + GQI+N+++L GLILI+Q+++ A K
Sbjct: 83 RFSVSLRSIPHKKTLVMFLGTDEIKTANIRTVYGQILNKESLHGLILILQSKMNHFAKKE 142
Query: 467 INLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ FKVE+FQITDLLVN+TKHVL+P+ +LT +QK+
Sbjct: 143 LEKFPFKVEVFQITDLLVNITKHVLQPQMDILTAEQKQ 180
[11][TOP]
>UniRef100_Q2RAP1 Os11g0143400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q2RAP1_ORYSJ
Length = 227
Score = 161 bits (408), Expect = 3e-38
Identities = 80/161 (49%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Frame = +2
Query: 98 EPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV 277
E P+C+ + +D G++ESHR +L+R+T +EML+DRGYS+P EI R+L EFR + P +
Sbjct: 14 EVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGI 73
Query: 278 DRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQA 457
+RL FT T +DPSK++ ++F P VK+ +R I Q + L+ L+LI+Q++I S+A
Sbjct: 74 ERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRA 132
Query: 458 LKAI-NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+AI + FKV+IFQ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQK 173
[12][TOP]
>UniRef100_Q2QXY2 RNA polymerase Rpb5, N-terminal domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q2QXY2_ORYSJ
Length = 335
Score = 161 bits (408), Expect = 3e-38
Identities = 80/161 (49%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Frame = +2
Query: 98 EPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV 277
E P+C+ + +D G++ESHR +L+R+T +EML+DRGYS+P EI R+L EFR + P +
Sbjct: 122 EVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGI 181
Query: 278 DRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQA 457
+RL FT T +DPSK++ ++F P VK+ +R I Q + L+ L+LI+Q++I S+A
Sbjct: 182 ERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRA 240
Query: 458 LKAI-NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+AI + FKV+IFQ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 241 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQK 281
[13][TOP]
>UniRef100_Q0IQ77 Os12g0139500 protein n=2 Tax=Oryza sativa RepID=Q0IQ77_ORYSJ
Length = 227
Score = 161 bits (408), Expect = 3e-38
Identities = 80/161 (49%), Positives = 116/161 (72%), Gaps = 1/161 (0%)
Frame = +2
Query: 98 EPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV 277
E P+C+ + +D G++ESHR +L+R+T +EML+DRGYS+P EI R+L EFR + P +
Sbjct: 14 EVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGI 73
Query: 278 DRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQA 457
+RL FT T +DPSK++ ++F P VK+ +R I Q + L+ L+LI+Q++I S+A
Sbjct: 74 ERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRA 132
Query: 458 LKAI-NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+AI + FKV+IFQ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQK 173
[14][TOP]
>UniRef100_A2ZBC5 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2ZBC5_ORYSI
Length = 227
Score = 159 bits (401), Expect = 2e-37
Identities = 79/161 (49%), Positives = 115/161 (71%), Gaps = 1/161 (0%)
Frame = +2
Query: 98 EPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV 277
E P+C+ + +D G++ESHR +L+R+T +EML+DRGYS+P EI R+ EFR + P +
Sbjct: 14 EVPECIASMIDRGSVESHRLFLARRTAMEMLRDRGYSVPEAEIARTPPEFRAWWAEKPGI 73
Query: 278 DRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQA 457
+RL FT T +DPSK++ ++F P VK+ +R I Q + L+ L+LI+Q++I S+A
Sbjct: 74 ERLAFTTTLVSDPSKKVQLVFCPPEPVKIATIREIYLQ-TKEENLSRLVLILQSKILSRA 132
Query: 458 LKAI-NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+AI + FKV+IFQ TDLLVN+TKHVLKPKH+VL+ QK
Sbjct: 133 REAIKEIFKFKVDIFQATDLLVNITKHVLKPKHEVLSADQK 173
[15][TOP]
>UniRef100_B4FYH9 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FYH9_MAIZE
Length = 248
Score = 150 bits (378), Expect = 9e-35
Identities = 78/162 (48%), Positives = 115/162 (70%), Gaps = 2/162 (1%)
Frame = +2
Query: 98 EPPKCLITKLDNG-TIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPD 274
E C+ T LD G ++ESHR +L+R+T LEML+DRGY++P +E+ R+L EFR P+
Sbjct: 34 EVAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPE 93
Query: 275 VDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQ 454
++RL F+ T T+DPS ++ V+F PG VK+ +R I ++ + + L+ LILI+Q +I S
Sbjct: 94 LERLAFSTTLTSDPSSKVKVVFCPPGPVKIAAIRLIYTEVKD-ENLSRLILILQGKIMST 152
Query: 455 ALKAIN-LLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
++I + FKV+ FQIT+LLVN+TKHVLKPKH+VLT + K
Sbjct: 153 TRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGK 194
[16][TOP]
>UniRef100_UPI0001985D3D PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001985D3D
Length = 1260
Score = 148 bits (374), Expect = 3e-34
Identities = 73/157 (46%), Positives = 108/157 (68%)
Frame = +2
Query: 110 CLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR 289
C+ ++ G+IES+RYYLSR+T +ML DRGY++P E+ RSL +FR G +PD RLR
Sbjct: 13 CITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLR 72
Query: 290 FTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+ PSK+ILV+F G ++ V+R I QI NR+ L LIL++Q+++ S A K +
Sbjct: 73 ICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVV 131
Query: 470 NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ KVE FQIT+LL+N+TKHV PKH++L+ ++K+
Sbjct: 132 DEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKR 168
[17][TOP]
>UniRef100_A7Q5P2 Chromosome undetermined scaffold_53, whole genome shotgun sequence
n=1 Tax=Vitis vinifera RepID=A7Q5P2_VITVI
Length = 221
Score = 148 bits (374), Expect = 3e-34
Identities = 73/157 (46%), Positives = 108/157 (68%)
Frame = +2
Query: 110 CLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR 289
C+ ++ G+IES+RYYLSR+T +ML DRGY++P E+ RSL +FR G +PD RLR
Sbjct: 13 CITADMEQGSIESYRYYLSRRTLFQMLSDRGYNVPHSELTRSLSDFRASFGHNPDPSRLR 72
Query: 290 FTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+ PSK+ILV+F G ++ V+R I QI NR+ L LIL++Q+++ S A K +
Sbjct: 73 ICLPLISSPSKKILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVV 131
Query: 470 NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ KVE FQIT+LL+N+TKHV PKH++L+ ++K+
Sbjct: 132 DEYPIKVEFFQITELLINITKHVSVPKHEILSAQEKR 168
[18][TOP]
>UniRef100_B9RGC5 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RGC5_RICCO
Length = 239
Score = 148 bits (373), Expect = 3e-34
Identities = 72/158 (45%), Positives = 109/158 (68%)
Frame = +2
Query: 107 KCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRL 286
+CL ++ ++ES RYYLSRKT +EML+DRGY + E+ S EF G +PD+ +L
Sbjct: 29 ECLTKFVEQASLESQRYYLSRKTVMEMLRDRGYDVADSELTGSFTEFLSEFGDNPDILKL 88
Query: 287 RFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKA 466
R +A+ + P K+++V+F G +K+ +R + QI N+++L GLILI+Q+++ A K
Sbjct: 89 RISASLHSHPDKKMVVVFMGTEEIKLANIRGLLCQIKNKESLNGLILILQSKMNHYARKE 148
Query: 467 INLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ KVEIF I+DLLVN+TKHVLKP+H+VLT +QK+
Sbjct: 149 LGQFPSKVEIFHISDLLVNITKHVLKPRHEVLTAEQKQ 186
[19][TOP]
>UniRef100_B6TJI5 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6TJI5_MAIZE
Length = 264
Score = 148 bits (373), Expect = 3e-34
Identities = 77/162 (47%), Positives = 114/162 (70%), Gaps = 2/162 (1%)
Frame = +2
Query: 98 EPPKCLITKLDNG-TIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPD 274
E C+ T LD G ++ESHR +L+R+T LEML+DRGY++P +E+ R+L EFR P+
Sbjct: 50 EVAACISTMLDRGGSVESHRLFLARRTALEMLRDRGYAVPEEELARTLPEFRAWWEYRPE 109
Query: 275 VDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQ 454
++RL F+ T +DPS ++ V+F PG VK+ +R I ++ + + L+ LILI+Q +I S
Sbjct: 110 LERLAFSTTLASDPSSKVKVVFCPPGPVKIAAIRLIYTEVKD-ENLSRLILILQGKIMST 168
Query: 455 ALKAIN-LLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
++I + FKV+ FQIT+LLVN+TKHVLKPKH+VLT + K
Sbjct: 169 TRESIKEIFRFKVDTFQITELLVNITKHVLKPKHEVLTAEGK 210
[20][TOP]
>UniRef100_B6SJT2 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Zea mays
RepID=B6SJT2_MAIZE
Length = 154
Score = 143 bits (361), Expect = 8e-33
Identities = 73/149 (48%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Frame = +2
Query: 134 GTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTD 313
G++ESHR +L+R+T LEML DRGY++P +E+ R+L EFR P+++RL F T T+D
Sbjct: 6 GSVESHRLFLARRTALEMLXDRGYAVPEEELARTLPEFRAWXEYXPELERLAFXTTLTSD 65
Query: 314 PSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAIN-LLNFKV 490
PS ++ V+F PG VK+ +R I ++ + + L LILI+Q +I S ++I + FKV
Sbjct: 66 PSSKVKVVFCPPGPVKIAAIRLIYTEVKD-ENLARLILILQGKIMSPTRESIKEIFRFKV 124
Query: 491 EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ FQIT+LLVN+TKHVLKPKH+VLT + K
Sbjct: 125 DTFQITELLVNITKHVLKPKHEVLTAEGK 153
[21][TOP]
>UniRef100_C5Y4H1 Putative uncharacterized protein Sb05g002600 n=1 Tax=Sorghum
bicolor RepID=C5Y4H1_SORBI
Length = 263
Score = 143 bits (360), Expect = 1e-32
Identities = 76/162 (46%), Positives = 111/162 (68%), Gaps = 2/162 (1%)
Frame = +2
Query: 98 EPPKCLITKLD-NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPD 274
E C+ LD G++ES R +L+R+T LEML+DRGY++P DE+ R+L EFR P+
Sbjct: 49 EVAACISAMLDLGGSVESKRLFLARRTALEMLRDRGYAVPEDELARTLPEFRAWWEDKPE 108
Query: 275 VDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQ 454
++RL F+ T +DPS ++ V+F P VK+ +R + V + L+ LILI+Q +I S+
Sbjct: 109 LERLAFSTTLASDPSSKVKVVFCPPEPVKIAAIR-VVYTGVKDENLSRLILILQGRIMSK 167
Query: 455 ALKAI-NLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
A +AI + +KV+ FQIT+LLVN+TKH LKPKHQVLT ++K
Sbjct: 168 AREAIKEIFPYKVDTFQITELLVNITKHALKPKHQVLTAEEK 209
[22][TOP]
>UniRef100_Q9M1H8 RNA polymerase 24kDa subunit-like protein n=1 Tax=Arabidopsis
thaliana RepID=Q9M1H8_ARATH
Length = 233
Score = 132 bits (331), Expect = 3e-29
Identities = 67/174 (38%), Positives = 103/174 (59%)
Frame = +2
Query: 59 QNGNADSTPQPPQEPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSL 238
+ G ++ + C+ D G IES R+YL+R T EML+DRGY + E+ +L
Sbjct: 7 EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66
Query: 239 DEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTG 418
EFR + G+ P+++RLR +DP K+ILV+F G + V VR + QI N L
Sbjct: 67 SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126
Query: 419 LILIVQNQITSQALKAINLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+IL++Q+++ A KA+ F VE F I DLLVN+TKH+ +PK ++L ++K+
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKE 180
[23][TOP]
>UniRef100_Q2HW77 RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal n=1
Tax=Medicago truncatula RepID=Q2HW77_MEDTR
Length = 224
Score = 121 bits (304), Expect = 3e-26
Identities = 68/176 (38%), Positives = 109/176 (61%), Gaps = 1/176 (0%)
Frame = +2
Query: 56 IQNGNADSTPQPPQEPPKCLITKL-DNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQR 232
I+NGN + +CL+ + IE+ RY+ RKT ++ML DRGY++ ++
Sbjct: 4 IENGNETRS--------ECLVRICNEESNIETIRYFECRKTLMDMLHDRGYNVSESDLTL 55
Query: 233 SLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTL 412
SL EFR G+ P L + + ++PS ++ V+F G ++ + + I QIV+++ L
Sbjct: 56 SLSEFRSRFGEFPKPHTLGVSVSLRSNPSIKVQVVFPGTDDIRKSNLIVIQSQIVDKERL 115
Query: 413 TGLILIVQNQITSQALKAINLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ LIL++Q+++TS A K + FKVEI Q+ DLLVNVTKHVL+PK++VLT +K+
Sbjct: 116 SRLILVMQSKMTSYARKELENCPFKVEIIQLNDLLVNVTKHVLQPKYEVLTANEKQ 171
[24][TOP]
>UniRef100_A8NU15 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8NU15_COPC7
Length = 273
Score = 94.4 bits (233), Expect = 6e-18
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 5/151 (3%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSP---DVDRLRFTATHTTD 313
E+ R + KT E++KDRG+S+ +EI SL+ FRQ++G + D ++L F H +
Sbjct: 71 ETARLWKVSKTIHELVKDRGFSVSDEEINMSLERFRQVYGNNMGVIDRNQLNFYTHHRLN 130
Query: 314 PSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NFK 487
PS +I V FT V V +R + G I+ + I+I +TS A K I+ + ++
Sbjct: 131 PSDQIFVYFTEEPNVGVKAMRKLLG-IMEEKAIQRGIIIFPATMTSSARKVISAMASTYR 189
Query: 488 VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F DLLVN+T H L P+H+VL+ ++KK
Sbjct: 190 LEEFAEADLLVNITHHTLVPRHEVLSPEEKK 220
[25][TOP]
>UniRef100_B4FGM1 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FGM1_MAIZE
Length = 206
Score = 89.0 bits (219), Expect = 2e-16
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R + R+T EML+DRGY + ++I+ +F + +G D L F AT PS
Sbjct: 7 EISRLFRIRRTVYEMLRDRGYGVRDEQIKLERHKFIERYGNPVRRDELTFNATKLNGPSD 66
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V +RN ++ N + G IL+VQ +++ A A+ ++ + +E+
Sbjct: 67 QIYVFFPNEAKPGVKTIRNYVEKMKNENVFAG-ILVVQQALSAFARSAVQEVSQKYHLEV 125
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ HVL P+H +LT + KK
Sbjct: 126 FQEAELLVNIKDHVLVPEHVLLTPEDKK 153
[26][TOP]
>UniRef100_Q01A87 RNA polymerase I, II and III 24.3 kDa subunit (ISS) n=1
Tax=Ostreococcus tauri RepID=Q01A87_OSTTA
Length = 1124
Score = 87.8 bits (216), Expect = 6e-16
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 3/147 (2%)
Frame = +2
Query: 149 HRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRI 328
+R + RKT +ML RGY + + E++R D F + G+ P D L A DPS+ I
Sbjct: 926 NRLFRVRKTIHKMLAARGYLVSARELERDADSFAEEFGEEPKRDSLTILAPRKDDPSENI 985
Query: 329 LVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIF 499
V F V V ++++A + + + + I++VQ +T Q+L F +E F
Sbjct: 986 FVFFPDEEKVGVKTIKDLAKR-MKEENVFRAIIVVQASLTPFAKQSLLECQTQKFYIEQF 1044
Query: 500 QITDLLVNVTKHVLKPKHQVLTDKQKK 580
Q T+LLVN+ HVL P+H +L+D+QK+
Sbjct: 1045 QETELLVNIVDHVLVPEHILLSDEQKR 1071
[27][TOP]
>UniRef100_C4PZ68 DNA-directed RNA polymerase II, putative (Fragment) n=1
Tax=Schistosoma mansoni RepID=C4PZ68_SCHMA
Length = 208
Score = 87.4 bits (215), Expect = 7e-16
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E+++ + RKT L+M KDRGY + E+++SL++F+ G P L H DP+
Sbjct: 8 ETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPTRKDLLMVVNHEEDPAD 67
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEI 496
+ V F V + VR Q+ T ++++ + +T A AI L+ K +E
Sbjct: 68 MLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLEC 127
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
F +L+VN+T+H L P+H VLT ++KK
Sbjct: 128 FFENELMVNITEHQLVPQHNVLTQEEKK 155
[28][TOP]
>UniRef100_Q5DDM1 SJCHGC05306 protein n=1 Tax=Schistosoma japonicum
RepID=Q5DDM1_SCHJA
Length = 206
Score = 87.0 bits (214), Expect = 9e-16
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E+++ + RKT L+M KDRGY + E+++SL++F+ G P L H DP+
Sbjct: 6 ETYKLWRIRKTILKMCKDRGYLVMPKELEQSLEDFKATVGDPPARKDLLMVVNHEEDPAD 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEI 496
+ V F V + VR Q+ T ++++ + +T A AI L+ K +E
Sbjct: 66 MLYVFFPEEEKVNMKTVRAYLNQMQQDSTYRAILVLQEKGLTPSAKTAIAELSCKYTLEC 125
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
F +L+VN+T+H L P+H VLT ++KK
Sbjct: 126 FFENELMVNITEHQLVPQHDVLTQEEKK 153
[29][TOP]
>UniRef100_A4RWP8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RWP8_OSTLU
Length = 205
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 3/146 (2%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R + RKT +ML RGY + + E++R +D F + G+ P + L A DPS+ I
Sbjct: 8 RLFRVRKTIHKMLAARGYLVSAKELERDIDSFTEDFGEEPKRESLTILAPKRDDPSENIF 67
Query: 332 VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIFQ 502
V F V V ++++A ++ + + I++VQ +T Q+L F +E FQ
Sbjct: 68 VFFPDEEKVGVKTIKDLAKRMKDENVFRA-IIVVQASLTPFAKQSLLECQTQKFYIEQFQ 126
Query: 503 ITDLLVNVTKHVLKPKHQVLTDKQKK 580
T+LLVN+ HVL P+H +L+D QK+
Sbjct: 127 ETELLVNIIDHVLVPEHILLSDDQKR 152
[30][TOP]
>UniRef100_B9N7D1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9N7D1_POPTR
Length = 206
Score = 85.9 bits (211), Expect = 2e-15
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R RKT ++MLKDRGY + EI+ + ++F +G + + L T D S
Sbjct: 7 EIKRLLRIRKTVMQMLKDRGYFVGDFEIKMTREQFESKYGNNMKREDLVINKTKRNDSSD 66
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V V ++ ++ + + IL+VQ +T A IN ++ F +E+
Sbjct: 67 QIYVFFPEEAKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCINEISTKFHLEV 125
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ +HVL P+HQVL++++KK
Sbjct: 126 FQEAELLVNIKEHVLVPEHQVLSNEEKK 153
[31][TOP]
>UniRef100_Q19PJ3 TIR-NBS-LRR type disease resistance protein n=1 Tax=Populus
trichocarpa RepID=Q19PJ3_POPTR
Length = 1617
Score = 85.1 bits (209), Expect = 4e-15
Identities = 44/106 (41%), Positives = 67/106 (63%)
Frame = +2
Query: 185 MLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTGPGIVKV 364
M KDRGY + E+ RSL EFR I G PD+D LRF+ + ++P + LVIF G ++
Sbjct: 1 MHKDRGYDVADTELTRSLMEFRSIFGNCPDLDSLRFSISLRSNPYNKNLVIFMGTDEIRT 60
Query: 365 NVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFQ 502
+R + GQI+++++ GLILI+Q+++ A K FKV++FQ
Sbjct: 61 ANIRAVYGQILSKESRQGLILILQSKMNHFAKKEPEKFPFKVKVFQ 106
[32][TOP]
>UniRef100_A7PEL2 Chromosome chr11 scaffold_13, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PEL2_VITVI
Length = 206
Score = 84.7 bits (208), Expect = 5e-15
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R + RKT ++MLKDRGY + EI + +F G++ + L TD S
Sbjct: 7 EISRLFRIRKTVMQMLKDRGYFVGDFEINMTKHQFVSKFGENMKREDLVINKAKRTDSSD 66
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V V ++ ++ + + IL+VQ +T A IN ++ F +E+
Sbjct: 67 QIYVFFPEEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQNLTPFARTCINEISTKFHLEV 125
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ +HVL P+HQVLT ++KK
Sbjct: 126 FQEAELLVNIKEHVLVPEHQVLTSEEKK 153
[33][TOP]
>UniRef100_A6N9W6 25-kDa subunit RNA polymerase n=1 Tax=Ornithodoros parkeri
RepID=A6N9W6_ORNPR
Length = 210
Score = 82.8 bits (203), Expect = 2e-14
Identities = 45/152 (29%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++LD+F+Q G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQTLDQFKQQFGDKPSERRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + + +T I++VQ +T A +A+ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTYC-QRMQEENITRAIIVVQQGMTPSAKQALTDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F ++LL+N+T+H L P+H VLT ++K
Sbjct: 125 YILEYFLESELLINITEHELVPEHVVLTPEEK 156
[34][TOP]
>UniRef100_A9RWG5 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RWG5_PHYPA
Length = 208
Score = 82.0 bits (201), Expect = 3e-14
Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
+S R Y RKT +EML+DR Y + E+ S ++FR+ +G P + L ++ ++
Sbjct: 9 QSARLYRIRKTVMEMLRDRDYVVADYELTLSKEQFREKYGDEPKREDLVIQKPRRSNNAE 68
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEI 496
I V F V V ++ + + + + IL+VQ +T A + ++ + + +E+
Sbjct: 69 HIFVFFPEEAKVGVKTIKTYVDR-MKTENVHRAILVVQQNLTPFARQCVSEMASKYHLEV 127
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ +HVL P H+VLT +KK
Sbjct: 128 FQEAELLVNIKEHVLVPLHEVLTPDEKK 155
[35][TOP]
>UniRef100_C1EDR8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EDR8_9CHLO
Length = 204
Score = 81.3 bits (199), Expect = 5e-14
Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R + RKT +ML RGY + E+ R D F + G+ P D L DP++ I
Sbjct: 7 RLFRIRKTVCKMLNARGYLVAQAELDRDKDSFTEEFGEDPRRDALTLQFDLREDPTQHIF 66
Query: 332 VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIFQ 502
V F V V ++ A ++ + + + I++VQ +T Q+L F +E FQ
Sbjct: 67 VFFPDEEKVGVKTIKEYAKRMKD-EQVNRAIIVVQQSLTPFARQSLLECQAQKFYIEQFQ 125
Query: 503 ITDLLVNVTKHVLKPKHQVLTDKQKK 580
+LLVN+T HVL P+H +L+D+QK+
Sbjct: 126 EAELLVNITDHVLVPEHILLSDEQKR 151
[36][TOP]
>UniRef100_C1MXV4 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MXV4_9CHLO
Length = 206
Score = 80.9 bits (198), Expect = 7e-14
Identities = 47/140 (33%), Positives = 77/140 (55%), Gaps = 3/140 (2%)
Frame = +2
Query: 170 KTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTGP 349
KT +ML RGY + E++R D FR+ +G P + L DPS+ I V F
Sbjct: 15 KTVHKMLNARGYLVQQKELERDKDSFREAYGDDPKRESLTLMLPRRDDPSENIFVFFPEE 74
Query: 350 GIVKVNVVRNIAGQIVNRDTLTGLILIVQNQIT---SQALKAINLLNFKVEIFQITDLLV 520
V V ++ A ++ + +++ I++VQ +T Q+L +F +E FQ +LLV
Sbjct: 75 EKVGVKTIKEYAKRMKD-ESVFRAIIVVQASLTPFAKQSLLECASQSFYIEQFQEMELLV 133
Query: 521 NVTKHVLKPKHQVLTDKQKK 580
N+T+HVL P+H +L+D +K+
Sbjct: 134 NITEHVLVPEHVLLSDAEKR 153
[37][TOP]
>UniRef100_A8J805 DNA-directed RNA polymerase II, 23 kDa polypeptide n=1
Tax=Chlamydomonas reinhardtii RepID=A8J805_CHLRE
Length = 206
Score = 80.9 bits (198), Expect = 7e-14
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R + R+T L+ML DRGY + +EI + D+FR G++P D L DP+++I
Sbjct: 6 RLWRVRRTCLQMLNDRGYLVSQEEIGTTKDQFRDRFGENPRKDDLTILVPRQDDPTEQIF 65
Query: 332 VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFQI 505
V F V V ++ +A ++ + + + I++ ++ T A A+ + + +E F
Sbjct: 66 VFFPEEQKVGVKTIKLLAERMKD-EKVNRAIMVTPSKFTPFAKSALEDMRPKYHIEHFLE 124
Query: 506 TDLLVNVTKHVLKPKHQVLTDKQKK 580
++LLVN+T+HVL P+H++L+ +K+
Sbjct: 125 SELLVNITEHVLVPEHRILSPDEKR 149
[38][TOP]
>UniRef100_C6SVA4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SVA4_SOYBN
Length = 206
Score = 80.5 bits (197), Expect = 9e-14
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R Y RKT ++ML+DRG+ + EI S EF+ +G+ + L + +
Sbjct: 7 EMGRLYRIRKTVMQMLRDRGFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGD 66
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V V ++ ++ N + + IL+ Q +T A I+ ++ F +E+
Sbjct: 67 QIYVFFPDEPKVGVKTMKTYTNRM-NSENVYRAILVTQTNLTPFARTCISEISSKFHLEV 125
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ +H L P+HQVLTD +KK
Sbjct: 126 FQEAELLVNIKEHELVPEHQVLTDAEKK 153
[39][TOP]
>UniRef100_O81098 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Arabidopsis
thaliana RepID=O81098_ARATH
Length = 205
Score = 80.1 bits (196), Expect = 1e-13
Identities = 47/148 (31%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R Y +KT ++ML+DRGY I E+ + +F + HG + + L D S
Sbjct: 6 ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
++ + F V V ++ ++ + + IL+VQ +T A I+ ++ F +E+
Sbjct: 66 QLYIFFPDEAKVGVKTMKMYTNRMKSENVFRA-ILVVQQNLTPFARTCISEISSKFHLEV 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ ++LVN+ +HVL P+HQVLT ++KK
Sbjct: 125 FQEAEMLVNIKEHVLVPEHQVLTTEEKK 152
[40][TOP]
>UniRef100_Q9N5K2 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caenorhabditis elegans RepID=RPAB1_CAEEL
Length = 211
Score = 80.1 bits (196), Expect = 1e-13
Identities = 44/153 (28%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 140 IESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATH 304
+E++R + RKT L+M+ DRGY + DE+ + L+ F+ +G P + L H
Sbjct: 6 LETYRLWRIRKTVLQMVHDRGYLVAQDELDQPLETFKVQYGDRPSEKKPARSDLTILVAH 65
Query: 305 TTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL-- 478
DP+ ++ V F + + ++ I Q + ++ I++VQ +T A ++I +
Sbjct: 66 NDDPADQMFVFFPEDAKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIGDMAP 124
Query: 479 NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F +L+VN+T+H L P+H V+T ++K
Sbjct: 125 KYMLEHFLEAELMVNITEHELVPEHVVMTAEEK 157
[41][TOP]
>UniRef100_B4FU06 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Zea mays
RepID=B4FU06_MAIZE
Length = 210
Score = 79.7 bits (195), Expect = 2e-13
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R Y R+T ++ML+DRGY + E+ S +F + G+S + L DPS +I
Sbjct: 14 RLYRIRRTVMQMLRDRGYLVVDHELATSRRDFLRKFGESFHREDLLINKYKKNDPSDQIY 73
Query: 332 VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFQI 505
V F V + ++ +++ + ++ +L++Q +T A + L K+ EIFQ
Sbjct: 74 VFFPNDDKVGMKHIKKYV-EMMTHENVSRAVLVLQQNLTPFAKSFLIELEPKIHLEIFQE 132
Query: 506 TDLLVNVTKHVLKPKHQVLTDKQKK 580
++L+N+ +HVL P+HQVLT+++KK
Sbjct: 133 AEMLINIKEHVLVPEHQVLTNEEKK 157
[42][TOP]
>UniRef100_A9RKG6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RKG6_PHYPA
Length = 208
Score = 79.7 bits (195), Expect = 2e-13
Identities = 46/144 (31%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R Y RKT +EML+DR Y + E+ + +EFR+ +G P + L ++ ++ I
Sbjct: 12 RLYRIRKTVMEMLRDRDYVVAEFELNSTKEEFREKYGDEPKREDLVIQKPKRSNNAEHIF 71
Query: 332 VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFQI 505
V F V V ++ + + + + IL+VQ +T A + ++ ++ K VE+FQ
Sbjct: 72 VFFPEEAKVGVKTIKTYVDR-MKTENVHRAILVVQQNLTPFARQCVSEMSSKYHVEVFQE 130
Query: 506 TDLLVNVTKHVLKPKHQVLTDKQK 577
+LLVN+ HVL P+H+VL ++K
Sbjct: 131 AELLVNIKDHVLVPQHEVLNAEEK 154
[43][TOP]
>UniRef100_C4WY48 ACYPI000388 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WY48_ACYPI
Length = 210
Score = 79.7 bits (195), Expect = 2e-13
Identities = 44/153 (28%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
ES++ + RKT +++ DRGY + DE+ ++L++F++ G P R L H
Sbjct: 6 ESYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPGRSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + +T+T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYC-QRMQEETITRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H VLT +K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKQ 157
[44][TOP]
>UniRef100_B3TLL2 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Elaeis
guineensis RepID=B3TLL2_ELAGV
Length = 204
Score = 79.3 bits (194), Expect = 2e-13
Identities = 48/145 (33%), Positives = 81/145 (55%), Gaps = 2/145 (1%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R + R+T ++ML+DRGY + EI + +F + G+ + L DP+ +I
Sbjct: 8 RLFRIRRTVMQMLRDRGYLVLDLEINMNKLQFLEKFGEGVKREDLVINKAKKNDPADQIY 67
Query: 332 VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIFQI 505
V F V V ++ ++ + G IL+VQ +T A +++ ++ K +E+FQ
Sbjct: 68 VFFPNDAKVGVKQIKQYVERMKAENVTRG-ILVVQQALTPFARQSLAEVSQKYMLEVFQD 126
Query: 506 TDLLVNVTKHVLKPKHQVLTDKQKK 580
T+LLVN+ +HVL P+HQVLT ++KK
Sbjct: 127 TELLVNIKEHVLVPEHQVLTSEEKK 151
[45][TOP]
>UniRef100_C6K8L9 RNA polymerase II B subunit n=1 Tax=Caenorhabditis brenneri
RepID=C6K8L9_CAEBE
Length = 211
Score = 79.3 bits (194), Expect = 2e-13
Identities = 43/153 (28%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Frame = +2
Query: 140 IESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATH 304
+E++R + RKT L+M+ DRGY + +E+ + L F++ G P + L H
Sbjct: 6 LETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLGHFKETFGDRPSEKKPARADLTILVAH 65
Query: 305 TTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL-- 478
DP+ ++ V F + + ++ I Q + ++ I++VQ +T A ++I +
Sbjct: 66 NDDPADQMFVFFPDDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIGDMAP 124
Query: 479 NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F +L+VN+T+H L P+H V+T ++K
Sbjct: 125 KYMLEHFLEAELMVNITEHELVPEHVVMTSEEK 157
[46][TOP]
>UniRef100_A8XGH1 C. briggsae CBR-RPB-5 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XGH1_CAEBR
Length = 211
Score = 79.0 bits (193), Expect = 3e-13
Identities = 43/153 (28%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 140 IESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATH 304
+E++R + RKT L+M+ DRGY + +E+ + L+ F++ G P + L H
Sbjct: 6 LETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAH 65
Query: 305 TTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL-- 478
DP+ ++ V F + + ++ I Q + ++ I++VQ +T A ++I +
Sbjct: 66 NDDPADQMFVFFPEDTKIGIKTIKAICQQ-MQEQNISRAIIVVQTGMTPSAKQSIGDMAP 124
Query: 479 NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F +L+VN+T+H L P+H V+T ++K
Sbjct: 125 KYMLEHFLEAELMVNITEHELVPEHVVMTAEEK 157
[47][TOP]
>UniRef100_C6SXZ4 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6SXZ4_SOYBN
Length = 206
Score = 77.8 bits (190), Expect = 6e-13
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R Y RKT ++ML+DR + + EI S EF+ +G+ + L + +
Sbjct: 7 EIGRLYRIRKTVMQMLRDRNFLVGDFEINMSKHEFKSKYGEHMKREDLVINKSKKDNSGD 66
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V V ++ ++ N + + IL+ Q +T A I+ ++ F +E+
Sbjct: 67 QIYVFFPDEPKVGVKTMKTYTNRM-NSENVYRAILVTQTNLTPFARTCISEISSKFHLEV 125
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ +H L P+HQVLTD +KK
Sbjct: 126 FQEAELLVNIKEHELVPEHQVLTDAEKK 153
[48][TOP]
>UniRef100_C4YG42 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
albicans RepID=C4YG42_CANAL
Length = 214
Score = 77.8 bits (190), Expect = 6e-13
Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + S KT EM++DRGY I +E+ +L+EFR S P ++ F AT T + +
Sbjct: 10 RLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATPTAETLE 69
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN- 481
+ + V F V + +RN I ++ TG I I QN +T A K I ++
Sbjct: 70 KFPETGSLWVEFCDEASVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPSANKLIPTVSP 128
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+EIFQ DL+VN+T H L PKH L ++KK
Sbjct: 129 ATIEIFQENDLIVNITHHELVPKHLKLNREEKK 161
[49][TOP]
>UniRef100_UPI000180C3C9 PREDICTED: similar to 25-kDa subunit RNA polymerase n=1 Tax=Ciona
intestinalis RepID=UPI000180C3C9
Length = 210
Score = 77.4 bits (189), Expect = 7e-13
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 7/152 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E++R + RKT +++ DRGY + E+ +SL+EF++ G P R L H
Sbjct: 6 ETYRLWRIRKTVMQLCHDRGYLVTQHELDQSLEEFKEEFGDKPSERRPGRQDLTILVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V V ++ Q + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGVKTIKTYC-QRMQEENIQRAIIVVQQSMTPSAKQSLFDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F +LL+N+T+H L P+H VLT ++K
Sbjct: 125 YILEQFLEQELLINITEHELVPEHVVLTPEEK 156
[50][TOP]
>UniRef100_B5DLP1 GA22581 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5DLP1_DROPS
Length = 320
Score = 77.4 bits (189), Expect = 7e-13
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Frame = +2
Query: 131 NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHG-----QSPDVDRLRFT 295
N E ++ + RKT EM DRGY + S E+ +++++F ++ G QSP L
Sbjct: 2 NDEAEVYKLWHIRKTLFEMSHDRGYLVTSAELDQTVEQFTELFGDKPSEQSPMRSDLTML 61
Query: 296 ATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINL 475
+H DP R+LV F V V ++ A + + + + IL+V++ +T A ++I
Sbjct: 62 LSHADDPKNRMLVFFPEEPKVAVKTIKAYAHR-MEGEGIHRAILVVRDCLTPPAKQSIMA 120
Query: 476 LN--FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ + +E F ++L +NVTKH L P+H VL++ +KK
Sbjct: 121 MAPLYIMEQFLESELTINVTKHELVPQHVVLSEVEKK 157
[51][TOP]
>UniRef100_B9W9S0 DNA-directed RNA polymerases I, II and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9W9S0_CANDC
Length = 214
Score = 77.4 bits (189), Expect = 7e-13
Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + S KT EM++DRGY I +E+ +L+EFR S P ++ F AT T + +
Sbjct: 10 RLFRSFKTVKEMVRDRGYYISQEELDMTLEEFRSKICDSMGTPQRKQMCFQATPTGETLE 69
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN- 481
+ + V F V + +RN I ++ TG I I QN +T A K I ++
Sbjct: 70 KFPETGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTG-IFIYQNSMTPSANKLIPTVSP 128
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+EIFQ DL+VN+T H L PKH L ++KK
Sbjct: 129 ATIEIFQENDLIVNITHHELVPKHLKLNHEEKK 161
[52][TOP]
>UniRef100_B6JZQ6 DNA-directed RNA polymerase I n=1 Tax=Schizosaccharomyces japonicus
yFS275 RepID=B6JZQ6_SCHJY
Length = 211
Score = 77.4 bits (189), Expect = 7e-13
Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
Frame = +2
Query: 170 KTTLEMLKDRGYSIPSDEIQRSLDEFRQIH---GQSPDVDRLRFTATHTTDPSK-RILVI 337
KT +++ DRGY++ E++ +LD+FR +H G++ D L F A K I V
Sbjct: 17 KTVHQLVHDRGYAVSQSELELTLDQFRAMHCGMGRNLDRSTLSFYAKPPPGSDKGTIYVE 76
Query: 338 FTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEIFQITD 511
F V + +R + + + TG ILI N +T A K I+ + F +E FQ +D
Sbjct: 77 FAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANNMTPSATKIISTVTGQFTIETFQESD 135
Query: 512 LLVNVTKHVLKPKHQVLTDKQKK 580
L+VN+T H L PKH +LT ++KK
Sbjct: 136 LIVNITHHELVPKHVLLTPEEKK 158
[53][TOP]
>UniRef100_B0D9Y7 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D9Y7_LACBS
Length = 208
Score = 77.4 bits (189), Expect = 7e-13
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV---DRLRFTATHTTD 313
E+ + + +T E++KDRG+ + DEI L FR ++ + V ++L F T T+
Sbjct: 6 ETAKLWKVNRTIHELVKDRGFLVSDDEIHMDLQRFRSLYANNSGVVDRNQLNFYTTSRTN 65
Query: 314 PSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NFK 487
+ +I V F+ V V +R + G + + G+I+ N +T A K I + ++
Sbjct: 66 STDQIFVFFSEEKSVGVKTMRKLLGILEEKSIQRGIIVFPGN-MTPSARKVIVAMAQQYR 124
Query: 488 VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F DLLVN+ H L P+H VL+ +KK
Sbjct: 125 LEEFSEADLLVNIVHHTLVPRHDVLSPDEKK 155
[54][TOP]
>UniRef100_Q6DEG5 Polymerase (RNA) II (DNA directed) polypeptide E n=1 Tax=Danio
rerio RepID=Q6DEG5_DANRE
Length = 210
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/151 (29%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEFR G P R L H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEE 155
[55][TOP]
>UniRef100_Q4S3C9 Chromosome 1 SCAF14751, whole genome shotgun sequence n=1
Tax=Tetraodon nigroviridis RepID=Q4S3C9_TETNG
Length = 210
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/151 (29%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEE 155
[56][TOP]
>UniRef100_C1C3Q7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Rana catesbeiana RepID=C1C3Q7_RANCA
Length = 210
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLT 565
+ +E F +LL+N+T+H L P+H V+T
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMT 152
[57][TOP]
>UniRef100_C1BIS3 DNA-directed RNA polymerase II 23 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BIS3_OSMMO
Length = 210
Score = 77.0 bits (188), Expect = 1e-12
Identities = 45/151 (29%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEE 155
[58][TOP]
>UniRef100_A9NTD1 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=A9NTD1_PICSI
Length = 191
Score = 77.0 bits (188), Expect = 1e-12
Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
++++ + R+T L+ML DR Y + EI + ++F G+ P + L PS+
Sbjct: 6 QTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSE 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V V ++ ++ + IL+VQ +T A +++ + F +E+
Sbjct: 66 QIFVFFPEEAKVGVKSIKTYVERMKSEGVFRA-ILVVQQALTPFARQSVQEFSGKFHLEV 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ +HVL P+ Q+LT ++KK
Sbjct: 125 FQEAELLVNIKEHVLVPEQQILTPEEKK 152
[59][TOP]
>UniRef100_Q5R587 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Pongo abelii RepID=RPAB1_PONAB
Length = 210
Score = 77.0 bits (188), Expect = 1e-12
Identities = 44/151 (29%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EFR G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[60][TOP]
>UniRef100_C1BZT4 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Esox lucius RepID=C1BZT4_ESOLU
Length = 210
Score = 76.6 bits (187), Expect = 1e-12
Identities = 45/151 (29%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T A H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLAAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T ++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEE 155
[61][TOP]
>UniRef100_Q28HF5 Polymerase (RNA) II (DNA directed) polypeptide E n=2 Tax=Xenopus
RepID=Q28HF5_XENTR
Length = 210
Score = 76.3 bits (186), Expect = 2e-12
Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 7/148 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLT 565
+ +E F +LL+N+T+H L P+H V+T
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMT 152
[62][TOP]
>UniRef100_Q8R0H0 Polr2e protein n=1 Tax=Mus musculus RepID=Q8R0H0_MOUSE
Length = 162
Score = 76.3 bits (186), Expect = 2e-12
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEE 155
[63][TOP]
>UniRef100_Q7XUF8 OJ991113_30.8 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XUF8_ORYSJ
Length = 205
Score = 76.3 bits (186), Expect = 2e-12
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E+ R + R+T ++ML+DRGY + +I +F G D D L F+ + +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V +R+ ++ G IL+VQ +++ A A+ ++ F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRSYVERMKQESVFNG-ILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ H L P+H++LT +QKK
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKK 152
[64][TOP]
>UniRef100_Q5VQW7 Os01g0805800 protein n=2 Tax=Oryza sativa RepID=Q5VQW7_ORYSJ
Length = 210
Score = 76.3 bits (186), Expect = 2e-12
Identities = 43/140 (30%), Positives = 78/140 (55%), Gaps = 2/140 (1%)
Frame = +2
Query: 167 RKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTG 346
R+T ++ML+DRGY + E+ +F + +G+S + L DPS +I V F
Sbjct: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
Query: 347 PGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFQITDLLV 520
V + ++ +++ + ++ +L++Q +T A + L K+ EIFQ +LL+
Sbjct: 79 DDKVGMKHIKKYV-EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 521 NVTKHVLKPKHQVLTDKQKK 580
N+ +HVL P+HQVL +++KK
Sbjct: 138 NIKEHVLVPEHQVLNNEEKK 157
[65][TOP]
>UniRef100_B7EQI7 cDNA clone:J023098I05, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=B7EQI7_ORYSJ
Length = 167
Score = 76.3 bits (186), Expect = 2e-12
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E+ R + R+T ++ML+DRGY + +I +F G D D L F+ + +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V +R+ ++ G IL+VQ +++ A A+ ++ F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRSYVERMKQESVFNG-ILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ H L P+H++LT +QKK
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKK 152
[66][TOP]
>UniRef100_A3AV22 Putative uncharacterized protein n=2 Tax=Oryza sativa
RepID=A3AV22_ORYSJ
Length = 217
Score = 76.3 bits (186), Expect = 2e-12
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E+ R + R+T ++ML+DRGY + +I +F G D D L F+ + +
Sbjct: 6 ETSRLFRIRRTVMQMLRDRGYLVTELDIDLPRGDFVARFGDPVDRDHLVFSRHKKDNGAD 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVEI 496
+I V F V +R+ ++ G IL+VQ +++ A A+ ++ F +E+
Sbjct: 66 QIYVFFPKDAKPGVKTIRSYVERMKQESVFNG-ILVVQQALSAFARSAVQEVSQKFHLEV 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +LLVN+ H L P+H++LT +QKK
Sbjct: 125 FQEAELLVNIKDHTLVPEHELLTPEQKK 152
[67][TOP]
>UniRef100_Q4P7S7 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P7S7_USTMA
Length = 554
Score = 76.3 bits (186), Expect = 2e-12
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 5/151 (3%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIH---GQSPDVDRLRFTATHTTD 313
E+ R + +T E+++DRGY + DEI L+ F+ + G S D ++L F H
Sbjct: 6 ETVRLWRVNRTIHELVRDRGYQVADDEISVDLETFKAEYAPTGGSVDRNKLNFFTEHGEH 65
Query: 314 PSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FK 487
++R+ V ++ V V +R + RD G+I I ++TS A K I+ + F
Sbjct: 66 ENQRLFVFYSSDRNVGVKTMRQFISIMEERDIQRGII-IWPEKMTSAARKVIDAMRGTFH 124
Query: 488 VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F+ LLVN+T H L PKH+ L ++KK
Sbjct: 125 LEDFEEAFLLVNITHHHLVPKHEPLYPEEKK 155
[68][TOP]
>UniRef100_Q80UW8 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=3
Tax=Murinae RepID=RPAB1_MOUSE
Length = 210
Score = 76.3 bits (186), Expect = 2e-12
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YVLEQFLQQELLINITEHELVPEHVVMTKEE 155
[69][TOP]
>UniRef100_UPI00005A3E0E PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
isoform 1 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A3E0E
Length = 208
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[70][TOP]
>UniRef100_UPI0000EB19D6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA
polymerases I, II, and III subunit ABC1) (DNA-directed
RNA polymerase II subunit E) (RPB5) (DNA-directed RNA
polymerase II 23 kDa polypeptide) (XAP4). n=1 Tax=Canis
lupus familiaris RepID=UPI0000EB19D6
Length = 212
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[71][TOP]
>UniRef100_UPI00005A3E0F PREDICTED: similar to DNA-directed RNA polymerase II 23 kDa
polypeptide (RPB25) (RPB5) (RPABC1) isoform 2 n=1
Tax=Canis lupus familiaris RepID=UPI00005A3E0F
Length = 162
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[72][TOP]
>UniRef100_A5B0H1 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B0H1_VITVI
Length = 162
Score = 75.9 bits (185), Expect = 2e-12
Identities = 40/94 (42%), Positives = 62/94 (65%)
Frame = +2
Query: 299 THTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL 478
+H ILV+F G ++ V+R I QI NR+ L LIL++Q+++ S A K ++
Sbjct: 17 SHEITKLHMILVVFCGTDEIRKAVIRVIFQQI-NREGLHRLILVLQSKMNSHARKVVDEY 75
Query: 479 NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
KVE FQIT+LL+N+TKHV PKH++L+ ++K+
Sbjct: 76 PIKVEFFQITELLINITKHVSVPKHEILSAQEKR 109
[73][TOP]
>UniRef100_C1BRK0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus rogercresseyi RepID=C1BRK0_9MAXI
Length = 210
Score = 75.9 bits (185), Expect = 2e-12
Identities = 42/153 (27%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT + + DRGY + DE+ ++LD+F+ G P + L H
Sbjct: 6 ENYKLWKVRKTVMSLCHDRGYLVTQDELDQTLDQFKVQFGDKPSEKQPSRNDLTILVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + +R + + + +T I++VQ+ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDDPKIGIKHIRTYCKR-MQEENITRAIILVQSGMTPSAKQSLMDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++KK
Sbjct: 125 YILEQFLESELLINLTEHDLVPEHVVMTPEEKK 157
[74][TOP]
>UniRef100_A8QAC6 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8QAC6_MALGO
Length = 159
Score = 75.9 bits (185), Expect = 2e-12
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 4/154 (2%)
Frame = +2
Query: 131 NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR--FTATH 304
N E+ R + +T E++ DRGY + +E+ LD F+ + VDR R F H
Sbjct: 2 NDDRETARLWRVNRTIHELVADRGYEVSEEELNVDLDTFKAEVTSNGIVDRNRMNFFTQH 61
Query: 305 TTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNF 484
P +R+ V ++ V V +R I+ +T I+I +++TS A K I +
Sbjct: 62 KDKPEERLFVFYSTERNVGVKTMRQFIN-ILEEKNITRGIIIWSDKMTSAAKKVIEAMRL 120
Query: 485 KV--EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
++ E F+ LLVN+T H L PKH+VLT +KK
Sbjct: 121 QLVLEDFEEAFLLVNITHHQLVPKHEVLTPDEKK 154
[75][TOP]
>UniRef100_P19388 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Homo sapiens RepID=RPAB1_HUMAN
Length = 210
Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[76][TOP]
>UniRef100_B5FX59 Putative DNA directed RNA polymerase II polypeptide E n=2
Tax=Neognathae RepID=B5FX59_TAEGU
Length = 210
Score = 75.5 bits (184), Expect = 3e-12
Identities = 43/151 (28%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[77][TOP]
>UniRef100_C3KI95 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Anoplopoma fimbria RepID=C3KI95_9PERC
Length = 210
Score = 75.5 bits (184), Expect = 3e-12
Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRAIIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V++ ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMSKEE 155
[78][TOP]
>UniRef100_B3S3Q9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S3Q9_TRIAD
Length = 210
Score = 75.5 bits (184), Expect = 3e-12
Identities = 40/152 (26%), Positives = 87/152 (57%), Gaps = 7/152 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEF-RQIHGQSPDVDRLR----FTATHT 307
E+++ + RKT ++M DRGY + +E+ ++ D+F Q + + + ++R H
Sbjct: 6 EAYKLWRIRKTVMQMCHDRGYMVSQEELDQTFDQFHEQFYSEMSESSQVRGLLSMLVHHI 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP++++ V F V +N ++ Q + R+ + I+I+Q+ +T A +++ +
Sbjct: 66 DDPTEQLFVFFPDEPKVGINTIKKYC-QRMQRENINRAIIIIQSGMTPTAKQSLIDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F ++L++N+T+H L PKH V++ ++K
Sbjct: 125 YTLESFMESELMINITEHHLVPKHIVMSPEEK 156
[79][TOP]
>UniRef100_B5X957 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=2
Tax=Euteleostei RepID=B5X957_SALSA
Length = 210
Score = 75.1 bits (183), Expect = 4e-12
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T ++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEE 155
[80][TOP]
>UniRef100_B5X8S7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5X8S7_SALSA
Length = 210
Score = 75.1 bits (183), Expect = 4e-12
Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T ++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHIVMTKEE 155
[81][TOP]
>UniRef100_B9ETS9 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=B9ETS9_ORYSJ
Length = 210
Score = 75.1 bits (183), Expect = 4e-12
Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 2/140 (1%)
Frame = +2
Query: 167 RKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVIFTG 346
R+T ++ML+DRGY + E+ +F + +G+S + L DPS +I V F
Sbjct: 19 RRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLINKYKKNDPSDQIYVFFPN 78
Query: 347 PGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKV--EIFQITDLLV 520
V + ++ +++ + ++ +L++Q +T A + L K+ EIFQ +LL+
Sbjct: 79 DDKVGMKHIKKYV-EMMKAENVSRAVLVLQQNLTPFARSFLQELEPKIHLEIFQEAELLI 137
Query: 521 NVTKHVLKPKHQVLTDKQKK 580
N+ +HVL P+HQVL + +KK
Sbjct: 138 NIKEHVLVPEHQVLNNGEKK 157
[82][TOP]
>UniRef100_Q09191 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAB1_SCHPO
Length = 210
Score = 75.1 bits (183), Expect = 4e-12
Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIH---GQSPDVDRLRFTATHTTDPSK 322
R + + KT +++ DRGY + E+ +LD+F+ +H G++ D L F A + D +K
Sbjct: 10 RVFRAWKTAHQLVHDRGYGVSQAELDLTLDQFKAMHCGMGRNLDRTTLSFYAKPSNDSNK 69
Query: 323 RILVI-FTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKVE 493
+ I F V + +R + + + TG ILI N +T A K I + F +E
Sbjct: 70 GTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTG-ILIYANSMTPSAAKIIATVTGQFTIE 128
Query: 494 IFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
FQ +DL+VN+T H L PKH +L+ +KK
Sbjct: 129 TFQESDLIVNITHHELVPKHILLSPDEKK 157
[83][TOP]
>UniRef100_UPI00015B5456 PREDICTED: similar to ENSANGP00000006082 n=1 Tax=Nasonia
vitripennis RepID=UPI00015B5456
Length = 210
Score = 74.7 bits (182), Expect = 5e-12
Identities = 41/153 (26%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F++ G P R L H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + + + I++VQ+ +T A +++ +
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYC-QRMQEEKIHRAIIVVQSGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H VLT +K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKE 157
[84][TOP]
>UniRef100_UPI0000D9E960 PREDICTED: similar to DNA directed RNA polymerase II polypeptide E
n=1 Tax=Macaca mulatta RepID=UPI0000D9E960
Length = 278
Score = 74.7 bits (182), Expect = 5e-12
Identities = 42/151 (27%), Positives = 83/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
+++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 DTYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[85][TOP]
>UniRef100_UPI0000D56A05 PREDICTED: similar to AGAP010064-PA n=1 Tax=Tribolium castaneum
RepID=UPI0000D56A05
Length = 210
Score = 74.7 bits (182), Expect = 5e-12
Identities = 37/152 (24%), Positives = 81/152 (53%), Gaps = 6/152 (3%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F++ G P R L H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQCGDKPSEKRPSRNDLTILVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL-NF 484
DP+ ++ V F + + ++ ++ + + +I++ Q S +++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKAIKTYCQRMQDENIHRAIIVVQQGMTPSAKQSLVDMAPKY 125
Query: 485 KVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 126 ILEQFLESELLINITEHELVPEHVVMTPEEKQ 157
[86][TOP]
>UniRef100_UPI000051A7F2 PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI000051A7F2
Length = 179
Score = 74.3 bits (181), Expect = 6e-12
Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F++ G P R L H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYC-QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H VLT +K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKE 157
[87][TOP]
>UniRef100_UPI00003C0CAC PREDICTED: similar to Rpb5 CG11979-PA n=1 Tax=Apis mellifera
RepID=UPI00003C0CAC
Length = 210
Score = 74.3 bits (181), Expect = 6e-12
Identities = 41/153 (26%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F++ G P R L H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQLFVFFPDEPKIGIKTIKTYC-QRMQEEKIHRAIIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H VLT +K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHIVLTPDEKE 157
[88][TOP]
>UniRef100_B6KFE7 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=3 Tax=Toxoplasma gondii RepID=B6KFE7_TOXGO
Length = 205
Score = 74.3 bits (181), Expect = 6e-12
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)
Frame = +2
Query: 146 SHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSP-DVDRLRFTATHTTDPSK 322
+ R + +RKT +ML+DRGY + + E S ++F Q ++ + R+ A+H DP
Sbjct: 5 TRRLFRARKTCCDMLQDRGYIVSAQEKNESWNDFLQRFKENECNRSRMLLIASHKVDPDN 64
Query: 323 RILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VE 493
R++V F V +R + ++ R+ + IL+ QN +T+ A AI+ + +E
Sbjct: 65 RVIVYFADETKKTGVKPIRELTERMEERN-IQRAILVTQNVLTAFARDAISEAAPRHIIE 123
Query: 494 IFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
F ++LLVN+TKH L PKH LT+ +K+
Sbjct: 124 NFMESELLVNITKHELVPKHVPLTNDEKQ 152
[89][TOP]
>UniRef100_UPI000186E78B DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186E78B
Length = 210
Score = 73.9 bits (180), Expect = 8e-12
Identities = 39/153 (25%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-----DRLRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F++ G P L H
Sbjct: 6 ETYKLWRIRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKIPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + + + I++VQ +T A ++++ +
Sbjct: 66 DDPTDQMFVFFPDDPKIGIKTIKTYC-QRMQEENIHRAIIVVQQGMTPSAKQSLSDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQ 157
[90][TOP]
>UniRef100_UPI0000587A08 PREDICTED: similar to RPB5 n=1 Tax=Strongylocentrotus purpuratus
RepID=UPI0000587A08
Length = 210
Score = 73.9 bits (180), Expect = 8e-12
Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Frame = +2
Query: 131 NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFT 295
N E++R + R+T +++ DRGY + +E+ ++L++F++ G P +R L
Sbjct: 2 NDEAETYRLWRVRRTIMQLCHDRGYLVTQEELDQTLEQFKEQFGDKPSENRPSRKDLTVL 61
Query: 296 ATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINL 475
H DP+ ++ V F V + ++ Q + + +T I+ VQ ++T A ++
Sbjct: 62 VAHNDDPTDQMFVFFPEEKKVGMKTIKAYC-QRMQEENITRAIITVQEKMTPSAKTSLGD 120
Query: 476 L--NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ + +E F +LL+N+T+H P+H V+T ++K
Sbjct: 121 MAPKYILEQFLEAELLINITEHDFVPEHVVMTGEEK 156
[91][TOP]
>UniRef100_C3ZQF0 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3ZQF0_BRAFL
Length = 210
Score = 73.9 bits (180), Expect = 8e-12
Identities = 41/152 (26%), Positives = 82/152 (53%), Gaps = 7/152 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ + LD+F+ G P + L H
Sbjct: 6 ETYKLWRIRKTIMQLCHDRGYLVTQDELDQRLDQFKDQFGDKPSEGKPARKDLVVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ Q + + ++ I++VQ +T A +A+ +
Sbjct: 66 DDPTDQMFVFFADEPKIGIKTIKMYC-QRMQEENISRAIIVVQMGMTPSAKQALVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +E F ++LL+N+T+H L P+H V+T ++K
Sbjct: 125 YILEQFLESELLINITEHQLVPEHVVMTPEEK 156
[92][TOP]
>UniRef100_C5MBX4 DNA-directed RNA polymerases II 24 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MBX4_CANTT
Length = 214
Score = 73.9 bits (180), Expect = 8e-12
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 10/152 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + KT EM++DRGY I +EI +L+EFR S P ++ F A T + +
Sbjct: 10 RLFRTFKTVKEMVRDRGYYISQEEIDMTLEEFRSKICDSMGNPQRKQMCFQAQPTGETLE 69
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNF 484
+ + V F V + +RN I ++ TGL I QN IT A K I ++
Sbjct: 70 KFPELGSLWVEFCDESSVGIKTMRNFCIHITEKNFSTGLF-IYQNSITPSANKLIPTVSP 128
Query: 485 KV-EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
V EIFQ +DL+VN+T H L PKH L+ +K
Sbjct: 129 SVIEIFQESDLIVNITHHELVPKHLKLSKDEK 160
[93][TOP]
>UniRef100_UPI0000E24E5A PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide E, 25kDa n=1 Tax=Pan troglodytes
RepID=UPI0000E24E5A
Length = 230
Score = 73.6 bits (179), Expect = 1e-11
Identities = 42/144 (29%), Positives = 79/144 (54%), Gaps = 7/144 (4%)
Frame = +2
Query: 164 SRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHTTDPSKRI 328
SRKT +++ DRGY + DE+ ++L+EF+ G P R R T H DP+ ++
Sbjct: 33 SRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQM 92
Query: 329 LVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NFKVEIFQ 502
V F V + ++ + Q + + +T +++VQ +T A +++ + + +E F
Sbjct: 93 FVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPKYILEQFL 151
Query: 503 ITDLLVNVTKHVLKPKHQVLTDKQ 574
+LL+N+T+H L P+H V+T ++
Sbjct: 152 QQELLINITEHELVPEHVVMTKEE 175
[94][TOP]
>UniRef100_A3GI06 DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase
II subunit 5) n=1 Tax=Pichia stipitis RepID=A3GI06_PICST
Length = 213
Score = 73.6 bits (179), Expect = 1e-11
Identities = 56/153 (36%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + S KT EM++DRGY I +E+ SLDEFR S P + F A T +
Sbjct: 9 RLFRSFKTVKEMVRDRGYYITQEEVDMSLDEFRAKICDSMGRPQRKLMCFQANPTAESLD 68
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN- 481
+ + V F V + +RN I ++ TG I I QN IT A K I ++
Sbjct: 69 KFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQNSITPSANKLIPTVSP 127
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E FQ DL+VN+T H L PKH L+ +KK
Sbjct: 128 ASIETFQEGDLVVNITHHELVPKHIKLSRDEKK 160
[95][TOP]
>UniRef100_UPI000056951D UPI000056951D related cluster n=1 Tax=Danio rerio
RepID=UPI000056951D
Length = 211
Score = 73.2 bits (178), Expect = 1e-11
Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTVMQLCHDRGYLVTQDELDQTLDEFKIQFGDRPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL-- 478
DP+ ++ V F + V + ++ Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPVEELKVGIKTIKMYC-QRMQEENITRAVIVVQTGMTPSAKQSLVDMAP 124
Query: 479 NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 KYILEQFLQQELLINITEHELVPEHIVMTKEE 156
[96][TOP]
>UniRef100_B8LR68 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LR68_PICSI
Length = 194
Score = 73.2 bits (178), Expect = 1e-11
Identities = 42/146 (28%), Positives = 75/146 (51%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
++++ + R+T L+ML DR Y + EI + ++F G+ P + L PS+
Sbjct: 6 QTNKLFRIRRTVLQMLNDRDYLVGDFEINTTKEQFLDKFGEDPKKEDLVINKAKRNSPSE 65
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFQ 502
+I V F V V ++ ++ + IL+VQ + + + F +E+FQ
Sbjct: 66 QIFVFFPEEAKVGVKSIKTYVERMKSEGVFRA-ILVVQQEFSGK---------FHLEVFQ 115
Query: 503 ITDLLVNVTKHVLKPKHQVLTDKQKK 580
+LLVN+ +HVL P+ Q+LT ++KK
Sbjct: 116 EAELLVNIKEHVLVPEQQILTPEEKK 141
[97][TOP]
>UniRef100_B3MEP0 GF12445 n=1 Tax=Drosophila ananassae RepID=B3MEP0_DROAN
Length = 210
Score = 73.2 bits (178), Expect = 1e-11
Identities = 39/153 (25%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F+++ G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPSRSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTR-MQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEEKQ 157
[98][TOP]
>UniRef100_C1C1G9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Caligus clemensi RepID=C1C1G9_9MAXI
Length = 210
Score = 72.8 bits (177), Expect = 2e-11
Identities = 42/153 (27%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT + + DRGY + DE+ ++ D+F+ G P + L H
Sbjct: 6 ETYKLWKVRKTVMSLCHDRGYLVTQDELDQTQDQFKVQFGDKPSEKQPSRNDLTILVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + V +R + + + +T I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEDPKIGVKHIRTYCKR-MQEENITRAIIVVQAGMTPSAKQSLMDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++KK
Sbjct: 125 YILEQFLESELLINLTEHDLVPEHVVMTPEEKK 157
[99][TOP]
>UniRef100_B4MK71 GK20665 n=1 Tax=Drosophila willistoni RepID=B4MK71_DROWI
Length = 210
Score = 72.8 bits (177), Expect = 2e-11
Identities = 39/153 (25%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F+++ G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTR-MQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 125 YILEQFLESELLINITEHDLVPEHVVMTAEEKQ 157
[100][TOP]
>UniRef100_Q7JZF5 Rpb5 n=5 Tax=melanogaster subgroup RepID=Q7JZF5_DROME
Length = 210
Score = 72.8 bits (177), Expect = 2e-11
Identities = 39/153 (25%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F+++ G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTR-MQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTVEEKQ 157
[101][TOP]
>UniRef100_Q2T9T3 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Bos taurus RepID=RPAB1_BOVIN
Length = 210
Score = 72.4 bits (176), Expect = 2e-11
Identities = 42/151 (27%), Positives = 82/151 (54%), Gaps = 7/151 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + D + ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ + Q + + +T +++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIK-VYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQ 574
+ +E F +LL+N+T+H L P+H V+T ++
Sbjct: 125 YILEQFLQQELLINITEHELVPEHVVMTKEE 155
[102][TOP]
>UniRef100_B4KPZ3 GI19761 n=2 Tax=Drosophila RepID=B4KPZ3_DROMO
Length = 210
Score = 72.0 bits (175), Expect = 3e-11
Identities = 39/153 (25%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F+++ G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPSRSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTR-MQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T + K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEDKQ 157
[103][TOP]
>UniRef100_B4J892 GH20567 n=1 Tax=Drosophila grimshawi RepID=B4J892_DROGR
Length = 210
Score = 72.0 bits (175), Expect = 3e-11
Identities = 39/153 (25%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F+++ G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSDKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTR-MQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T + K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTAEDKQ 157
[104][TOP]
>UniRef100_B5DLL1 GA22602 n=2 Tax=pseudoobscura subgroup RepID=B5DLL1_DROPS
Length = 210
Score = 72.0 bits (175), Expect = 3e-11
Identities = 39/153 (25%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F+ + G P R L H
Sbjct: 6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKDMFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKIGIKTIKTYCTR-MQEENIHRAIVVVQGGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTVEEKQ 157
[105][TOP]
>UniRef100_B0X7A5 DNA-directed RNA polymerase II 23 kDa polypeptide n=3 Tax=Culicidae
RepID=B0X7A5_CULQU
Length = 210
Score = 72.0 bits (175), Expect = 3e-11
Identities = 39/153 (25%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHT 307
E+++ + RKT +++ DRGY + DE+ ++L++F++ G P R L H
Sbjct: 6 ETYKLWRIRKTVMQLSHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDLIVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F + + ++ + + + + I++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPDEPKIGIKTIKTYCTR-MQEENIHRAIVVVQAGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ +E F ++LL+N+T+H L P+H V+T ++K+
Sbjct: 125 YILEQFLESELLINITEHELVPEHVVMTPEEKQ 157
[106][TOP]
>UniRef100_C4R3P8 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and
III n=1 Tax=Pichia pastoris GS115 RepID=C4R3P8_PICPG
Length = 214
Score = 71.6 bits (174), Expect = 4e-11
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Frame = +2
Query: 128 DNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTA 298
DN I S R + S +T EM DRGY I +E+ +SL+EFR S P + F A
Sbjct: 3 DNNRIIS-RLWRSFRTVKEMAADRGYFISQEEMDQSLEEFRSKICDSMGNPQRKLMSFLA 61
Query: 299 THTTDPSKR------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQAL 460
T + ++ + V F V + +RN +I ++ TG I I QN IT A
Sbjct: 62 NPTPEALEKYSDLGTLWVEFCDEPSVGIKTMRNFCLRIQEKNFSTG-IFIYQNNITPSAN 120
Query: 461 KAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
K I ++ + E FQ +DL+VN+T H L PKH L+D +K
Sbjct: 121 KMIPTVSPAIIETFQESDLVVNITHHELVPKHIRLSDGEK 160
[107][TOP]
>UniRef100_Q5CNJ4 DNA-directed RNA polymerase 2 n=2 Tax=Cryptosporidium
RepID=Q5CNJ4_CRYHO
Length = 205
Score = 71.2 bits (173), Expect = 5e-11
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Frame = +2
Query: 149 HRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-DRLRFTATHTTDPSKR 325
+R++ +R+T EML+DRGY + S + + F++ + R+ A+H D +KR
Sbjct: 6 NRFFRARRTLCEMLEDRGYIVSSQDKEEDFSTFKERFESHQRLRSRMLMVASHRQDQTKR 65
Query: 326 ILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEI 496
I+ F V +R+I ++ + + ILI QN +T+ A AI K +E
Sbjct: 66 IICYFADESKKTGVKPIRDIVEKM-DEHAIQRAILISQNVLTAHAKVAILDAAPKHYIES 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQK 577
F +LLVN+TKH L PKH +L+D +K
Sbjct: 125 FLENELLVNITKHELVPKHILLSDDEK 151
[108][TOP]
>UniRef100_Q757H7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Eremothecium gossypii RepID=RPAB1_ASHGO
Length = 215
Score = 70.9 bits (172), Expect = 7e-11
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + +T EM++DRGY I +E+ SL++F+ + S P + F + T + K
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPTEETLK 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V + ++N I ++ TG I I QN IT ALK + ++
Sbjct: 71 KSPNMGSVWVEFCDEPSVGIKTMKNFVIHIGEKNFQTG-IFIYQNGITPSALKLLPSVAP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F T L+VN+T H L PKH L+D++KK
Sbjct: 130 ATIETFNETALVVNITHHELVPKHIKLSDEEKK 162
[109][TOP]
>UniRef100_Q6BIJ0 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Debaryomyces hansenii RepID=RPAB1_DEBHA
Length = 214
Score = 70.1 bits (170), Expect = 1e-10
Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR---FTATHTTDPSK 322
R + S KT EM++DRGY I +EI SL EFR S +V + + F A T + +
Sbjct: 10 RLWRSFKTVKEMVRDRGYYITQEEIDMSLAEFRSRICDSMNVPQRKLMCFQANPTAESLE 69
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN- 481
+ + V F V + +RN I ++ TG I I Q+ IT A K I ++
Sbjct: 70 KFPDLGSLWVEFCDEASVGIKTMRNFCIHISEKNFSTG-IFIYQSSITPSANKLIPTVSP 128
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E FQ DL+VN+T H L PKH L +KK
Sbjct: 129 ASIETFQEGDLVVNITHHDLVPKHIKLARDEKK 161
[110][TOP]
>UniRef100_B6AE06 DNA-directed RNA polymerase 2, putative n=1 Tax=Cryptosporidium
muris RN66 RepID=B6AE06_9CRYT
Length = 205
Score = 69.3 bits (168), Expect = 2e-10
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-DRLRFTATHTTDPSKRI 328
R++ +R+T EML+DRGY + S + F++ + R+ A+H D +KRI
Sbjct: 7 RFFRARRTLCEMLEDRGYIVSSQDKDEQFATFKERFESHQRLRSRMLMVASHKQDQTKRI 66
Query: 329 LVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIF 499
+ F V +R+I ++ + + ILI QN +T+ A AI K +E F
Sbjct: 67 ICYFADESKKTGVKPIRDIVEKM-DEHNIQRAILISQNVLTAHAKVAILDAAPKHYIESF 125
Query: 500 QITDLLVNVTKHVLKPKHQVLTDKQK 577
+LLVN+T+H L PKH +L+D++K
Sbjct: 126 LENELLVNITRHELVPKHVLLSDEEK 151
[111][TOP]
>UniRef100_A9BK88 Rpabc5 n=1 Tax=Cryptophyta RepID=A9BK88_9CRYP
Length = 216
Score = 69.3 bits (168), Expect = 2e-10
Identities = 45/148 (30%), Positives = 86/148 (58%), Gaps = 10/148 (6%)
Frame = +2
Query: 167 RKTTLEMLKDRGYSI--PSDEIQRSLDEFRQIHGQSPDVDR--LRFTATHTTDPSKRILV 334
R+T L+ML+DR Y + D+++ S F Q ++ V R L + + + RILV
Sbjct: 15 RRTILQMLRDRSYVVFENQDDLEMSRSSFEQKFVKNFQVIRSELEINRSKWLEENMRILV 74
Query: 335 IFTGPGIVKVNV-VRNIAG--QIVNRDTLTGLILIVQNQITS---QALKAINLLNFKVEI 496
+F K + V++I G + + +D I+++ ++TS QA+ +IN L+ K+E
Sbjct: 75 VFIEGEKEKSAIGVKSIRGFCERIKQDGFQNSIIVLHGKLTSHAKQAINSINSLDDKIEY 134
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
F ++L+VN+T+H L PKH+++++++ +
Sbjct: 135 FSESELIVNITEHNLVPKHEIISEEEAR 162
[112][TOP]
>UniRef100_Q8ID59 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8ID59_PLAF7
Length = 205
Score = 68.9 bits (167), Expect = 3e-10
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 8/151 (5%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR----FTATHTTDPS 319
R+Y RKT EML+DRGY + E + F+++ D DR R + TH D +
Sbjct: 7 RFYKCRKTCCEMLEDRGYIMTPREKLENFSTFKEMF---EDNDRQRSKMGISTTHKNDSN 63
Query: 320 KRILVIFTGPGIVKVNV--VRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK-- 487
RI+V F + K V +R + ++ + ++ IL+ QN +T A AI +
Sbjct: 64 NRIIVYFADE-VKKTGVKPLRELTERMEEK-SIQRAILVTQNILTPFARDAIKEAAPRHI 121
Query: 488 VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F T+LLVN+TKH L P+H LT +KK
Sbjct: 122 IENFLDTELLVNITKHELVPRHIPLTSDEKK 152
[113][TOP]
>UniRef100_B2VUN9 DNA-directed RNA polymerases I n=1 Tax=Pyrenophora tritici-repentis
Pt-1C-BFP RepID=B2VUN9_PYRTR
Length = 235
Score = 68.9 bits (167), Expect = 3e-10
Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 28/165 (16%)
Frame = +2
Query: 170 KTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFT--------ATHTTDP 316
KTT EM+ DRGY + +++ SLD+F + + + PD RL F+ A +T P
Sbjct: 19 KTTKEMMNDRGYMVLEEDMNMSLDQFARKYAREDGEPDRSRLNFSCQPSEEMLAKYTDAP 78
Query: 317 SKR----------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKA 466
+K+ I V F V + +R +VN +G+++ V+ +T A++
Sbjct: 79 TKKVPNPLPNIGTIWVEFNADENVGMKQLREYMAHLVNGSFHSGIMITVK-PMTGMAIRL 137
Query: 467 INLLNFK-------VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ VE+F DLLVN+TKH L PKH +L+D++K+
Sbjct: 138 LRGATSLSDGPKGGVEVFIEQDLLVNITKHELVPKHVLLSDEEKQ 182
[114][TOP]
>UniRef100_Q98RN7 RNA polymerase I, II and III 24.3 kDa subunit n=1 Tax=Guillardia
theta RepID=Q98RN7_GUITH
Length = 214
Score = 68.2 bits (165), Expect = 5e-10
Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 11/149 (7%)
Frame = +2
Query: 167 RKTTLEMLKDRGYSI--PSDEIQRSLDEFRQIHGQSPDVDR--LRFTATHTTDPSKRILV 334
R+T L+M++DRGY + D++ S F + + ++ + R L +P RIL+
Sbjct: 14 RRTVLQMIRDRGYVVFDSKDDLNISRSSFEEFYMKNHAICRKSLEIKRPRWDNPENRILI 73
Query: 335 IFTGPGIVKVNV----VRNIAGQIVNRDTLTGLILIVQNQIT---SQALKAINLLNFKVE 493
+F K+N+ +R +I N + + +++I+ ++T QA+ +IN N +E
Sbjct: 74 VFVEGEKDKMNIGVKSIRLFCERIKN-EGFSRVLMILNGKLTPHAKQAVSSINSNNDLIE 132
Query: 494 IFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
F +L+VN+T H+L PKH++L+ + K
Sbjct: 133 YFSENELIVNITHHMLVPKHEILSKNESK 161
[115][TOP]
>UniRef100_Q4U8E3 DNA-directed RNA polymerase, subunit (RPB5 homologue), putative n=1
Tax=Theileria annulata RepID=Q4U8E3_THEAN
Length = 205
Score = 67.8 bits (164), Expect = 6e-10
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-DRLRFTATHTTDPS 319
E R + R+T EML+DRGY IPS E + EF+ + V ++ A+ T
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPSQEKLETFAEFKARYEMYDKVRSKMLLVASLRTAAE 63
Query: 320 KRILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--V 490
++LV F V +R + ++ + D + IL+ QN +T A AI K +
Sbjct: 64 NKLLVYFADEKKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTPFAKDAIMEAYPKNII 122
Query: 491 EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
E F T+LLVN+TKH L PKH LT ++K+
Sbjct: 123 ENFMETELLVNITKHELVPKHIPLTMEEKQ 152
[116][TOP]
>UniRef100_A1D205 RNA polymerase subunit n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1D205_NEOFI
Length = 234
Score = 67.8 bits (164), Expect = 6e-10
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 26/172 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTT- 310
E R + + +T EML DRGY + +EIQ LDEFRQ + PD +++ +A T
Sbjct: 14 EMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLDEFRQKYADPVGFPDRTKMKISARPTAA 73
Query: 311 --------------DPSKRILVIF-------TGPGIVKVNVVRNIAGQIVNRDTLTGLIL 427
DP I+ TG G +V + V+ + +
Sbjct: 74 MQAKYTPLPTPANPDPQPDCGTIYVEFCADSTGVGTKQVRAFNH----FVDENNFHTGVF 129
Query: 428 IVQNQITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
I Q I+ A++ ++ + ++ E FQ DLLVN+T+H L PKH +L+ ++KK
Sbjct: 130 ITQTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKK 181
[117][TOP]
>UniRef100_Q5KN51 DNA-directed RNA polymerases ii 24 kDa polypeptide, putative n=1
Tax=Filobasidiella neoformans RepID=Q5KN51_CRYNE
Length = 221
Score = 67.4 bits (163), Expect = 8e-10
Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR----------- 289
E R + +T EM++DRGY + EI S +EF+ HG + V+ ++
Sbjct: 8 ELARLWRVSRTVHEMVRDRGYLLADYEINVSFEEFKDRHGATGSVEWMKCPQADKSSSRS 67
Query: 290 ---FTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQAL 460
F A H D + +I V F V ++ G + G+I I +++ A
Sbjct: 68 NMSFDAIHENDNTDKIFVYFCADKNVSKASMKTFIGSMDKMGARRGII-IWSEKMSPAAK 126
Query: 461 KAINLLN--FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
K + + + +E F +DLLVN+TKH L PKH V+ ++K
Sbjct: 127 KTLQEMQSEYHLEDFPESDLLVNITKHFLVPKHTVMKPEEK 167
[118][TOP]
>UniRef100_Q4N141 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N141_THEPA
Length = 205
Score = 67.0 bits (162), Expect = 1e-09
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-DRLRFTATHTTDPS 319
E R + R+T EML+DRGY IP E + EF+ + V ++ A+ T
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPVQEKLETFAEFKARYEMHEKVRSKMLLVASQRTASE 63
Query: 320 KRILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--V 490
++LV F V +R + ++ + D + IL+ QN +T A AI K +
Sbjct: 64 NKLLVYFADEKKKTGVKPIRELTERMEDHD-IHRAILVTQNVLTPFAKDAIMEAYPKNII 122
Query: 491 EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
E F T+LLVN+TKH L PKH LT ++K+
Sbjct: 123 ENFMETELLVNITKHELVPKHIPLTMEEKQ 152
[119][TOP]
>UniRef100_B5E0K0 GA24393 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=B5E0K0_DROPS
Length = 210
Score = 67.0 bits (162), Expect = 1e-09
Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Frame = +2
Query: 131 NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVD-----RLRFT 295
N E ++ + RKT L+M DRGY + +E+ ++L F++I G P + +
Sbjct: 2 NDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLL 61
Query: 296 ATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINL 475
H DP+ ++ V F V + ++ + + +++ I++VQN IT A +A+
Sbjct: 62 VAHNDDPTDQMFVFFPQEPKVGIKDIKRYCLR-MQEESIYRAIIVVQNSITPSARQALVE 120
Query: 476 L--NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ + +E F +L+ N+T++ P+H V+T +K+
Sbjct: 121 MAPKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQ 157
[120][TOP]
>UniRef100_B4GBQ3 GL10501 n=1 Tax=Drosophila persimilis RepID=B4GBQ3_DROPE
Length = 210
Score = 67.0 bits (162), Expect = 1e-09
Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Frame = +2
Query: 131 NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVD-----RLRFT 295
N E ++ + RKT L+M DRGY + +E+ ++L F++I G P + +
Sbjct: 2 NDEEELYKMWRIRKTVLQMCHDRGYLVTQEELDQTLQGFQEIFGDRPSENCPSRADITLL 61
Query: 296 ATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINL 475
H DP+ ++ V F V + ++ + + +++ I++VQN IT A +A+
Sbjct: 62 VAHNDDPTDQMFVFFPEEPKVGIKDIKRYCLR-MQEESIYRAIIVVQNSITPSARQALVE 120
Query: 476 L--NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ + +E F +L+ N+T++ P+H V+T +K+
Sbjct: 121 MAPKYVLEQFLEAELMFNITENENVPEHVVMTPDEKQ 157
[121][TOP]
>UniRef100_B3L6X3 DNA-directed RNA polymerase 2, putative n=1 Tax=Plasmodium knowlesi
strain H RepID=B3L6X3_PLAKH
Length = 205
Score = 67.0 bits (162), Expect = 1e-09
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-DRLRFTATHTTDPSKRI 328
R+Y RKT EML+DRGY I E + F++ ++ + R+ +H D S +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYVITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDESNKI 66
Query: 329 LVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEIF 499
+V F V +R + ++ + ++ IL+ QN +T A AI + +E F
Sbjct: 67 IVYFADETKKTGVKPLRELTEKM-DEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIENF 125
Query: 500 QITDLLVNVTKHVLKPKHQVLTDKQKK 580
T+LLVN+TKH L P+H LT +K+
Sbjct: 126 LDTELLVNITKHELVPRHIPLTSDEKR 152
[122][TOP]
>UniRef100_A5K2Q3 DNA-directed RNA polymerase II 23 kDa polypeptide, putative n=1
Tax=Plasmodium vivax RepID=A5K2Q3_PLAVI
Length = 205
Score = 67.0 bits (162), Expect = 1e-09
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 5/148 (3%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDV-DRLRFTATHTTDPSKRI 328
R+Y RKT EML+DRGY I E + F++ ++ + R+ +H D + +I
Sbjct: 7 RFYKCRKTCCEMLEDRGYIITPREKLENFATFKEQFEENEKLRSRMTIITSHKNDANNKI 66
Query: 329 LVIFTGPGIVKVNV--VRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK--VEI 496
+V F I K V +R + ++ + ++ IL+ QN +T A AI + +E
Sbjct: 67 IVYFADE-IKKTGVKPLRELTEKM-DEKSIQRAILVTQNTLTPFARDAIKEAAPRHIIEN 124
Query: 497 FQITDLLVNVTKHVLKPKHQVLTDKQKK 580
F T+LLVN+TKH L P+H LT +K+
Sbjct: 125 FLDTELLVNITKHELVPRHIPLTSDEKR 152
[123][TOP]
>UniRef100_C5DNB3 KLTH0G15598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DNB3_LACTC
Length = 215
Score = 66.6 bits (161), Expect = 1e-09
Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + KT EM++DRGY I +E+ SL++F+ + S P + F + + +
Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEVDLSLEDFKAKYCDSMGRPQRKMMSFQSNPVEEALE 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V + ++N I ++ TG I + QN +T A+K + ++
Sbjct: 71 KFPNMGSLWVEFCDEASVGIKTMKNFVIHISEKNFQTG-IFVYQNGVTPSAMKLLPSVAP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F L+VN+T H L PKH L+D++KK
Sbjct: 130 ATIETFHEASLVVNITHHELVPKHIKLSDEEKK 162
[124][TOP]
>UniRef100_B7FSY0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FSY0_PHATR
Length = 228
Score = 66.2 bits (160), Expect = 2e-09
Identities = 41/149 (27%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 137 TIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDP 316
T E+ R + +T ML RGY +P + + F++ G+ P + L D
Sbjct: 27 TPEAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDD 86
Query: 317 SKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FKV 490
+ ++ + F V V ++ ++ ++++ I+I++ IT A +A+ ++ F++
Sbjct: 87 TNQLFIFFPEDEKVGVKPIKVYTDRM-RAESVSNAIIILRVDITPFAKQAVQEMSDSFRI 145
Query: 491 EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
E F+ ++LLV++TKH L P HQVLT +K
Sbjct: 146 EHFKESELLVDITKHQLVPVHQVLTPNEK 174
[125][TOP]
>UniRef100_Q9FJL8 RNA polymerase I, II and III 24.3 kDa subunit-like protein n=1
Tax=Arabidopsis thaliana RepID=Q9FJL8_ARATH
Length = 210
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 5/151 (3%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD 313
E R + R+T L+ML+DRGY+I ++ +EF Q ++ + + L +A +
Sbjct: 7 EITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPN 66
Query: 314 PSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN--FK 487
P+ +I V + V V V++ + D + I++V IT+ A A++ LN
Sbjct: 67 PADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLT 126
Query: 488 VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E+F+ +L+ N+T+H L K+ VL D+ KK
Sbjct: 127 IEVFEEAELVTNITEHKLVNKYYVLDDQAKK 157
[126][TOP]
>UniRef100_B8C1Q1 RPB5,-like protein to RNA polymerase i n=1 Tax=Thalassiosira
pseudonana CCMP1335 RepID=B8C1Q1_THAPS
Length = 226
Score = 65.9 bits (159), Expect = 2e-09
Identities = 45/170 (26%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Frame = +2
Query: 86 QPPQEPPKCLITKLDNG---TIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQI 256
+ P EPP T + T E+ R + KT ML RGY + + + + +F Q
Sbjct: 5 EQPTEPPTANNTPQTSSSSLTPEASRLFRVYKTVSAMLSKRGYMVSREMREMTPFDFTQR 64
Query: 257 HGQSPDVDRLRFTATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQ 436
G+ P + L D + ++ V F V V ++ + ++ + + ++ IL+++
Sbjct: 65 FGEYPSREGLTILVEKADDETNQLFVFFPEDEKVGVKPIKILTDRMKD-ENVSNAILVLR 123
Query: 437 NQITSQALKAINLLN--FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
IT A +A+ ++ F++E F+ +LLV++T+H L P+H VL+ +K+
Sbjct: 124 GDITPFAKQAVLEMSDSFRLEHFKEAELLVDITEHTLVPEHLVLSQNEKQ 173
[127][TOP]
>UniRef100_A7APR4 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Babesia bovis RepID=A7APR4_BABBO
Length = 205
Score = 65.9 bits (159), Expect = 2e-09
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 7/153 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLR----FTATHTT 310
E R + R+T EML+DRGY IP+ E L+ F + + DR+R A+ T
Sbjct: 4 EEGRLFRCRRTCCEMLEDRGYFIPNQE---RLETFAEFKARYELYDRVRSKMLLVASLKT 60
Query: 311 DPSKRILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK 487
D ++LV F V +R + ++ + D + IL+ QN +T A AI +
Sbjct: 61 DKDAKLLVYFADETKKTGVKPIRELTEKMEDHD-IHRAILVTQNVLTPFAKDAILEAAPR 119
Query: 488 --VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F T+LLVN+TKH L PKH LT +K+
Sbjct: 120 NIIENFLETELLVNITKHELVPKHIPLTADEKQ 152
[128][TOP]
>UniRef100_Q6CA26 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Yarrowia lipolytica RepID=RPAB1_YARLI
Length = 212
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Frame = +2
Query: 170 KTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQ---SPDVDRLRFTATHTTDPSKR----- 325
+T E++KDRGY+I E+ S D+F P ++ F A+ + + ++
Sbjct: 14 RTAKELVKDRGYTITDKEVNLSFDQFVSEMCDPMGKPIKKKMCFMASPSPEAIEKFPEMG 73
Query: 326 -ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLNFKVEIF 499
I V F V V +RN I TG IL+ +N +T A + I ++ ++ F
Sbjct: 74 NIWVEFCEEASVTVKTMRNFCIHISENKFATG-ILVYENNMTPSANRLIPSVAPATIDTF 132
Query: 500 QITDLLVNVTKHVLKPKHQVLTDKQKK 580
Q TDLLVN+TKHVL P H L+ +KK
Sbjct: 133 QETDLLVNITKHVLVPTHIKLSGAEKK 159
[129][TOP]
>UniRef100_A7TEH4 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TEH4_VANPO
Length = 215
Score = 65.5 bits (158), Expect = 3e-09
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + +T EM++DRGY I +EI SL++F+ + S P + F A T + +
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEEIDLSLEDFKAKYCDSMGRPQRKMMSFQANPTEETME 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V V ++N I ++ TG I + Q +T A+K + ++
Sbjct: 71 KFPTMSSLWVEFCDEPSVGVKTMKNFVIHIQEKNYQTG-IFVYQTNVTPSAMKLVPSIPP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F L+VN+T H L PKH L++ +KK
Sbjct: 130 ATIETFHEASLIVNITHHELVPKHIRLSENEKK 162
[130][TOP]
>UniRef100_B5XGU7 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Salmo salar RepID=B5XGU7_SALSA
Length = 159
Score = 65.1 bits (157), Expect = 4e-09
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++LDEF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--N 481
DP+ ++ V F V + ++ Q + + +T ++VQ +T A +++ +
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRACIVVQMGMTPSAKQSLVDMAPK 124
Query: 482 FKVEIFQITDLLVNVTKH 535
+ +E F +LL+N+T+H
Sbjct: 125 YILEQFLQQELLINITEH 142
[131][TOP]
>UniRef100_C5KB88 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KB88_9ALVE
Length = 213
Score = 65.1 bits (157), Expect = 4e-09
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Frame = +2
Query: 125 LDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQ----IHGQSPDVDRLRF 292
+D+ TI R + RKT E+L+DRGY + + + + F Q I + L
Sbjct: 6 IDDTTI---RLWRVRKTIFELLQDRGYVVAQKYLNETKESFAQQWNEIQERKGGRHDLII 62
Query: 293 TATHTTDPSKRILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+ DPS +++V F V V +R +A ++ L+ IL+VQ +T+ A AI
Sbjct: 63 LVSKQDDPSDQLIVFFPDENKRVGVKPIRTLALKM-EEQRLSRAILVVQQPLTAFAKTAI 121
Query: 470 NLLN--FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ ++E+F ++L+VN+T H L P+H+ LT ++K+
Sbjct: 122 QEASPQMEIEVFNESELVVNITHHELVPEHKPLTPEEKR 160
[132][TOP]
>UniRef100_A9CSN6 DNA-directed RNA polymerase, subunit H, RpoH-RPB5 n=1
Tax=Enterocytozoon bieneusi H348 RepID=A9CSN6_ENTBH
Length = 202
Score = 64.7 bits (156), Expect = 5e-09
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Frame = +2
Query: 158 YLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILVI 337
+L+R T +EML DRGY I I L++F+ D FTA + + I
Sbjct: 10 WLARNTIIEMLTDRGY-IFEQSIFSQLEDFKNTFNLE-DSTSCNFTAIRNVNDKVILCAI 67
Query: 338 -FTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFQITDL 514
FT + + I N+ +++ LILI N++ AL ++ NF +E+F D+
Sbjct: 68 HFTSNDKLSKKQIETIITDYSNQ-SISKLILISCNKLNHAALAYLDKSNFSIELFLYKDI 126
Query: 515 LVNVTKHVLKPKHQVLTDKQK 577
L N TKH+L P H++++ ++K
Sbjct: 127 LFNPTKHILVPHHKIMSIEEK 147
[133][TOP]
>UniRef100_A2QAL5 Catalytic activity: Nucleoside triphosphate + RNA(n) =
Pyrophosphate + RNA(n+1) n=1 Tax=Aspergillus niger CBS
513.88 RepID=A2QAL5_ASPNC
Length = 235
Score = 64.7 bits (156), Expect = 5e-09
Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 26/171 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFT------ 295
E R + + +T EML DRGY + DE+Q L EF+Q + PD ++++ +
Sbjct: 15 EMTRLWRTWRTVFEMLLDRGYEVTEDEVQMPLHEFKQKYSDPLGYPDRNKMKISARPTEA 74
Query: 296 --ATHTTDPSK----------RILVIF----TGPGIVKVNVVRNIAGQIVNRDTLTGLIL 427
A +T PSK I V F TG G +V + V+ + +
Sbjct: 75 MQAKYTPLPSKSNPNPQPDCGTIYVEFCPDSTGVGTKQVRTFNH----FVDENNFHTGVF 130
Query: 428 IVQNQITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
I Q I+ A++ ++ + ++ E FQ DLLVN+T+H L PKH +L+ +K
Sbjct: 131 ITQTPISPSAVRLLSSMPGRICEHFQEQDLLVNITRHELVPKHVLLSPDEK 181
[134][TOP]
>UniRef100_B9RKM1 DNA-directed RNA polymerase II, putative n=1 Tax=Ricinus communis
RepID=B9RKM1_RICCO
Length = 225
Score = 64.3 bits (155), Expect = 7e-09
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPD-----VDRLRFTATHT 307
E R + R+T ++MLKDR Y + EI + +F +G + + + + + +
Sbjct: 7 EIKRLFRIRRTVMQMLKDRTYLVTDSEINITKHQFTSKYGDNMKREDLVIHKSKRDGSDS 66
Query: 308 TDPSK--------------RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQI 445
P+K +I V F V V ++ ++ + + IL+VQ +
Sbjct: 67 FYPTKLLFLNQLEAWLPLYQIYVFFPEEQKVGVKTMKTYTNRMKSENVFRA-ILVVQQSL 125
Query: 446 TSQALKAINLL--NFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
T A I + F +E+FQ ++LLVN+ +HVL P+HQVLT+++KK
Sbjct: 126 TPFARTCIAEIASKFHLEVFQESELLVNIKEHVLVPEHQVLTNEEKK 172
[135][TOP]
>UniRef100_C5KHW9 DNA-directed RNA polymerases II 24 kDa polypeptide, putative n=1
Tax=Perkinsus marinus ATCC 50983 RepID=C5KHW9_9ALVE
Length = 213
Score = 64.3 bits (155), Expect = 7e-09
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 7/159 (4%)
Frame = +2
Query: 125 LDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQ----IHGQSPDVDRLRF 292
+D+ TI R + RKT E+L+DRGY + + + + F Q I + L
Sbjct: 6 IDDVTI---RLWRVRKTIFELLQDRGYLVAQKYLNETKESFAQQWNEIQERKGGRHDLII 62
Query: 293 TATHTTDPSKRILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI 469
+ DPS +++V F V V +R +A ++ L+ IL+VQ +T+ A AI
Sbjct: 63 LVSKQDDPSDQLIVFFPDENKRVGVKPIRTLALKM-EEQRLSRAILVVQQPLTAFAKTAI 121
Query: 470 NLLN--FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+ ++E+F ++L+VN+T H L P+H+ LT ++K+
Sbjct: 122 QEASPQMEIEVFNESELVVNITHHELVPEHKPLTAEEKR 160
[136][TOP]
>UniRef100_A1CP51 RNA polymerase subunit n=1 Tax=Aspergillus clavatus
RepID=A1CP51_ASPCL
Length = 234
Score = 63.5 bits (153), Expect = 1e-08
Identities = 47/168 (27%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD 313
E R + + +T EML DRGY + +EIQ L+EFR + + PD +++ +A T
Sbjct: 14 EMTRLWRTWRTVFEMLADRGYEVTEEEIQIPLEEFRHKYSDAVGYPDRTKMKISARPTAA 73
Query: 314 PSKRILVIFTGP--------GIVKVNVVRNIAG----------QIVNRDTLTGLILIVQN 439
+ + T G + V + +G V+ + + I Q
Sbjct: 74 MQAKYTPLPTPANPDPQPDCGTIYVEFCADSSGVGTKQVRAFNHFVDENNFHTGVFITQT 133
Query: 440 QITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
I+ A++ ++ + ++ E FQ DLLVN+T+H L PKH +L+ ++KK
Sbjct: 134 PISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEKK 181
[137][TOP]
>UniRef100_Q9LUR5 RNA polymerase-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LUR5_ARATH
Length = 178
Score = 62.8 bits (151), Expect = 2e-08
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E R +L ++T ++MLKDRGY I EI +L+EF + +G D K
Sbjct: 7 EIKRLFLVQRTLMQMLKDRGYLIDGSEITMTLEEFIEKYG----------------DNMK 50
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQN--QITSQALKAINLLN--FKV 490
R L++ + ++ T+ IL+VQ+ + QAL + + F +
Sbjct: 51 RSLLLLS---------------KLRKMMTMIRAILVVQDIKAFSRQALVFLGAVYPIFHI 95
Query: 491 EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
E+FQ +L+VNV +HV P+HQ LT ++K+
Sbjct: 96 EVFQEKELIVNVKEHVFVPEHQALTTEEKQ 125
[138][TOP]
>UniRef100_A9UR01 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UR01_MONBE
Length = 210
Score = 62.8 bits (151), Expect = 2e-08
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSK 322
E +R Y T +M DRG+ + + + + D + +I+G+ P + L F D +
Sbjct: 6 ERYRLYKVWITLKQMCHDRGFRVTQEMMNMTFDTWNEIYGEYPRKE-LSFPVQKVDDDND 64
Query: 323 RILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL-----NFK 487
+ V F VKV ++++ ++ + D L I++ Q ++ A I++L +
Sbjct: 65 GLFVFFPESPDVKVAAIKSLYDRLKS-DNLRRAIIVYQRKVAPVAKSHIDILLKEDPPYI 123
Query: 488 VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
VE F +L+ NVT+H L P H++L + +K+
Sbjct: 124 VETFAEAELVYNVTRHHLVPHHEILKESEKQ 154
[139][TOP]
>UniRef100_Q9P4B9 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces marxianus RepID=RPAB1_KLUMA
Length = 215
Score = 62.8 bits (151), Expect = 2e-08
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + +T EM++DRGY I +EI SL++F+ + S P + F + T + +
Sbjct: 11 RLWRAFRTVKEMVRDRGYFITQEEIDLSLEDFKVKYCDSMGKPQRKMMSFQSNPTEESIE 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V V ++N I ++ TG I I Q+ IT A K +
Sbjct: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F L+VN+T H L PKH L+D +KK
Sbjct: 130 AVIETFPEASLVVNITHHELVPKHIRLSDAEKK 162
[140][TOP]
>UniRef100_Q6CJ62 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Kluyveromyces lactis RepID=RPAB1_KLULA
Length = 215
Score = 62.8 bits (151), Expect = 2e-08
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + KT EM++DRGY I +EI SL++F+ + S P + F + T + +
Sbjct: 11 RLWRAFKTVKEMVRDRGYFITQEEIDLSLEDFKAKYCDSMGKPQRKMMSFQSNPTEESIE 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V V ++N I ++ TG I I Q+ IT A K +
Sbjct: 71 KFPEMGSLWVEFCDEASVGVKTMKNFVVHITEKNFQTG-IFIYQSGITPSANKILPTAAP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F L+VN+T H L PKH L++ +KK
Sbjct: 130 AVIETFPEASLVVNITHHELVPKHIRLSEAEKK 162
[141][TOP]
>UniRef100_C5DR69 ZYRO0B06006p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DR69_ZYGRC
Length = 215
Score = 61.6 bits (148), Expect = 4e-08
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD--- 313
R + + KT EM+KDRGY I +EI+ L++F+ + S P + F + T +
Sbjct: 11 RLWRTFKTVKEMVKDRGYFIAQEEIELPLEDFKAKYCDSMGRPQRKMMSFQSNPTEESIA 70
Query: 314 --PSKRIL-VIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
PS L V F V V ++ I ++ TG I + QN +T A+K + ++
Sbjct: 71 KFPSMGSLWVEFCDEPTVGVKTMKTFVIHIQEKNFQTG-IFVYQNNVTPSAMKLVPSIPP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F L+VN+T H L PKH ++ +K+
Sbjct: 130 ATIETFHEASLVVNITHHELVPKHIRFSEDEKR 162
[142][TOP]
>UniRef100_C4VBP1 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4VBP1_NOSCE
Length = 204
Score = 61.2 bits (147), Expect = 6e-08
Identities = 37/146 (25%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEF-RQIHGQSPDVDRLRFTATHTTDPS 319
+ +++L R T +EM +RGY+ +D+ S D F Q DV+ + F + +
Sbjct: 4 KKRKFFLCRNTLVEMCTERGYT--TDQKVLSYDNFIAQFPSCDKDVNSINFVCKNADN-- 59
Query: 320 KRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIF 499
+ + F + + + + + + LIL++ +++S + +N+ + K+EIF
Sbjct: 60 -LVGIHFIDDEKIGKSSIEKVI-ETYKSINIYHLILVINQKMSSASQNIVNVSDLKIEIF 117
Query: 500 QITDLLVNVTKHVLKPKHQVLTDKQK 577
+ +L+ N+TKHV P+H++L D +K
Sbjct: 118 KDEELMFNITKHVSVPRHRILNDTEK 143
[143][TOP]
>UniRef100_P20434 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=5
Tax=Saccharomyces cerevisiae RepID=RPAB1_YEAST
Length = 215
Score = 61.2 bits (147), Expect = 6e-08
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + +T EM+KDRGY I +E++ L++F+ + S P + F A T +
Sbjct: 11 RLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESIS 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V V ++ I ++ TG I + QN IT A+K + ++
Sbjct: 71 KFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTG-IFVYQNNITPSAMKLVPSIPP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F L+VN+T H L PKH L+ +K+
Sbjct: 130 ATIETFNEAALVVNITHHELVPKHIRLSSDEKR 162
[144][TOP]
>UniRef100_Q0UZB4 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UZB4_PHANO
Length = 277
Score = 60.8 bits (146), Expect = 7e-08
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 33/198 (16%)
Frame = +2
Query: 83 PQPPQEPPKCLI---TKLDNGTIESHRYYLSR--KTTLEMLKDRGYSIPSDEIQRSLDEF 247
P P+ PP+ L T +D + + R +T EM+ +RGY++ +E+ SL+ F
Sbjct: 27 PDRPETPPRPLAHCPTTMDEPRYQPSLIRMWRVWRTAKEMMYERGYNVLDEEMTMSLEAF 86
Query: 248 RQIHGQS---PDVDRLRFTAT--------HTTDPSKR----------ILVIFTGPGIVKV 364
+ + PD RL F++T +T P+K+ I F V +
Sbjct: 87 ADKYAREDGEPDRSRLNFSSTPSEEMLIKYTPMPTKKEPNPVPAIGTIWCEFNADEAVGL 146
Query: 365 NVVRNIAGQIVNRDTLTGLILIVQNQITSQALK----AINLLNFK---VEIFQITDLLVN 523
+R+ + + +G+++ V+ IT A++ A NL + +E+F DLLVN
Sbjct: 147 KQLRDFMNHLGSGSFYSGIMVTVK-PITGMAIRLLRGASNLSDGPKGGIEVFVEQDLLVN 205
Query: 524 VTKHVLKPKHQVLTDKQK 577
+TKH L PKH +L+ ++K
Sbjct: 206 ITKHELVPKHVLLSAEEK 223
[145][TOP]
>UniRef100_C5G7M7 DNA-directed RNA polymerase II polypeptide n=2 Tax=Ajellomyces
dermatitidis RepID=C5G7M7_AJEDR
Length = 236
Score = 60.8 bits (146), Expect = 7e-08
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD 313
E R + + +T EML DRGY + +EI+ LDEFR + + PD ++++ +A
Sbjct: 16 EMTRLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISAR---- 71
Query: 314 PSKRILVIFTG-PGIVKVNVVRNIA---------------------GQIVNRDTLTGLIL 427
PS+ ++ +T P +K N V ++ I
Sbjct: 72 PSQAMMDRYTPLPTTLKPNPVPECGTIYVEFCPDIHSVGTKQVRAFNHFIDEQNYHTGIF 131
Query: 428 IVQNQITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
I Q I+ A++ +N + + E FQ +LLVN+T H L PKH +L+ ++KK
Sbjct: 132 ISQTPISPSAIRVLNSIPGRFCEHFQEQELLVNITHHELVPKHVLLSAEEKK 183
[146][TOP]
>UniRef100_Q7S8Z5 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7S8Z5_NEUCR
Length = 234
Score = 60.1 bits (144), Expect = 1e-07
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 28/173 (16%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQ---SPDVDRLRFTATHTTD 313
E R + + +T EM++DRGY + DE++ SL+ F+ + +P+ +L+F+A
Sbjct: 13 EVSRLWRAWRTVHEMVQDRGYELAEDEVKISLERFKAEYTNEDGTPNRAKLQFSAR---- 68
Query: 314 PSKRILVIFTGP-----------------------GIVKVNVVRNIAGQIVNRDTLTGLI 424
PS+ ++ FT P G + V+V++ + G I
Sbjct: 69 PSEAMIKKFTAPPTPSNPNPVPECGTIWVEFCTEKGSIGVSVMKKFVTHCSDNKFKAG-I 127
Query: 425 LIVQNQITSQALKAINLLN--FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
I +++QA K +++ + +VE F DLLVN+T H L PKH +L+ ++K
Sbjct: 128 FITAVPLSAQARKVMSVTSQYTQVECFLEEDLLVNITHHELVPKHVLLSKEEK 180
[147][TOP]
>UniRef100_C1GUJ0 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb01 RepID=C1GUJ0_PARBA
Length = 236
Score = 60.1 bits (144), Expect = 1e-07
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD 313
E + + + +T EML DRGY + +EI+ LDEFR + + PD ++++ +A
Sbjct: 16 EMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLDEFRTRYSDALGFPDRNKMKISAR---- 71
Query: 314 PSKRILVIFTG-PGIVKVNVVRNIA---------------------GQIVNRDTLTGLIL 427
PS+ ++ +T P + K N V ++ I
Sbjct: 72 PSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIF 131
Query: 428 IVQNQITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
I Q I+ A++ +N + + E FQ +LLVN+T H L PKH +L+ ++KK
Sbjct: 132 ISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKK 183
[148][TOP]
>UniRef100_C4Y929 DNA-directed RNA polymerases II 24 kDa polypeptide n=1
Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y929_CLAL4
Length = 287
Score = 58.9 bits (141), Expect = 3e-07
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Frame = +2
Query: 194 DRGYSIPSDEIQRSLDEFRQIHGQSPDVDR--LRFTATHTTDPSKR------ILVIFTGP 349
D GY I +EI +LDEF+ + R + F A T + +++ + V F
Sbjct: 98 DIGYYITDEEINMTLDEFKAKICPMGEAQRKLMCFQAQPTPEAAEKFPEMGSLWVEFCDE 157
Query: 350 GIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFQITDLLVNV 526
V + +RN I ++ TG I I Q IT A K I ++ +E+FQ +DL+VN+
Sbjct: 158 ASVGIKTMRNFCIHISEKNFSTG-IFIYQTSITPSANKLIPTVSPATIEVFQESDLVVNI 216
Query: 527 TKHVLKPKHQVLTDKQKK 580
T H L PKH L+ +KK
Sbjct: 217 THHELVPKHIRLSKPEKK 234
[149][TOP]
>UniRef100_C1FYH2 DNA-directed RNA polymerases I n=1 Tax=Paracoccidioides
brasiliensis Pb18 RepID=C1FYH2_PARBD
Length = 236
Score = 58.5 bits (140), Expect = 4e-07
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD 313
E + + + +T EML DRGY + +EI+ L+EFR + + PD ++++ +A
Sbjct: 16 EMTKLWRTWRTVFEMLADRGYEVTEEEIKIPLEEFRTRYSDALGFPDRNKMKISAR---- 71
Query: 314 PSKRILVIFTG-PGIVKVNVVRNIA---------------------GQIVNRDTLTGLIL 427
PS+ ++ +T P + K N V ++ I
Sbjct: 72 PSQAMMEKYTPLPTVSKPNPVPECGTIYVEFCADIQSVGTKQVRAFNHFIDEQNYHTGIF 131
Query: 428 IVQNQITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
I Q I+ A++ +N + + E FQ +LLVN+T H L PKH +L+ ++KK
Sbjct: 132 ISQTPISPSAMRVLNSIPGRFCEHFQEQELLVNITHHELVPKHILLSAEEKK 183
[150][TOP]
>UniRef100_C8VQY1 RNA polymerase subunit (AFU_orthologue; AFUA_1G14110) n=2
Tax=Emericella nidulans RepID=C8VQY1_EMENI
Length = 235
Score = 57.8 bits (138), Expect = 6e-07
Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 23/173 (13%)
Frame = +2
Query: 128 DNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIH-GQS--PDVDRLRFTA 298
D+ E+ R + + +T EML+DRGY + +E++ LDEF++ + G+ P ++L+ A
Sbjct: 10 DDAERETIRVWRTWRTVFEMLQDRGYEVTEEEVKIDLDEFKRKYVGEKGYPSREKLKIQA 69
Query: 299 THTT----------DPSKR--------ILVIFTGPGI-VKVNVVRNIAGQIVNRDTLTGL 421
T PS R I + F + VR + + TG
Sbjct: 70 RPTEAMKAKYTPLPTPSNRDPQPDCGTIYIEFCPDDSGIGTKQVRTFNHTVDEGNFHTG- 128
Query: 422 ILIVQNQITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
I I + I+ A++ ++ + ++ E FQ DLLVN+T+H L PKH +L+ ++K
Sbjct: 129 IFITKTPISPSAVRLLSGIPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEK 181
[151][TOP]
>UniRef100_A7RT72 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RT72_NEMVE
Length = 207
Score = 57.4 bits (137), Expect = 8e-07
Identities = 35/152 (23%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Frame = +2
Query: 146 SHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFTATHTT 310
+++++ RKT +++ I DE+ ++L++F++ G P R L H
Sbjct: 7 TYKFWRIRKTVMQVCNGL---ILRDELDKTLEQFKEQFGDRPSEGRPSRSDLSILVAHND 63
Query: 311 DPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NF 484
DP+ ++ V F V + ++ Q + + ++ +++VQ +T A +A+ + +
Sbjct: 64 DPTDQMFVFFPEEPKVGIKTIKQYC-QRMQEENISRAVIVVQLGMTPSAKQALVDMAPKY 122
Query: 485 KVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
+E F +L++N+T+H L P+H ++T +K+
Sbjct: 123 ILEQFVEAELMINITEHELVPEHVLMTPDEKQ 154
[152][TOP]
>UniRef100_C5FC74 DNA-directed RNA polymerase II polypeptide n=1 Tax=Microsporum
canis CBS 113480 RepID=C5FC74_NANOT
Length = 236
Score = 57.4 bits (137), Expect = 8e-07
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTD 313
E R + + +T E+L DRGY + +E++ SL EFR+ + + PD +++R +A
Sbjct: 16 EMARLWRTWRTVFELLLDRGYEVTEEEVKISLGEFRRRYSDALGFPDRNKMRISAR---- 71
Query: 314 PSKRILVIFTG-PGIVKVNVVRNIA---------------------GQIVNRDTLTGLIL 427
PS+ ++ +T P K N Q +++ I
Sbjct: 72 PSQAMMEKYTPLPTTSKPNTAPECGTIHVEFCSETQSVGTKHIRAFNQFIDQQNYHAGIF 131
Query: 428 IVQNQITSQALKAINLLNFK-VEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
I Q+ I+ A++ + + + E F +LLVN+T H L PKH +L+ ++KK
Sbjct: 132 ITQSPISPSAIRLLTAIPGRFCEHFLEQELLVNITHHELVPKHILLSAEEKK 183
[153][TOP]
>UniRef100_UPI000194DF40 PREDICTED: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
n=1 Tax=Taeniopygia guttata RepID=UPI000194DF40
Length = 119
Score = 56.2 bits (134), Expect = 2e-06
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFT-----ATHT 307
E++R + RKT +++ DRGY + DE+ ++L+EF+ G P R R T H
Sbjct: 6 ETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVAHN 65
Query: 308 TDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQA 457
DP+ ++ V F V + ++ Q + + +T +++VQ +T A
Sbjct: 66 DDPTDQMFVFFPEEPKVGIKTIKMYC-QRMQEENITRALIVVQQGMTPSA 114
[154][TOP]
>UniRef100_Q6FQA6 DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1
Tax=Candida glabrata RepID=RPAB1_CANGA
Length = 215
Score = 56.2 bits (134), Expect = 2e-06
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHTTDPSK 322
R + + +T EM++DRGY I +E+ +L++F+ + S + F A T +
Sbjct: 11 RLWRTFRTVKEMVRDRGYFIAQEELDLTLEDFKVKYCDSMGRAQRKMMSFQANPTEESMT 70
Query: 323 R------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAI-NLLN 481
+ + V F V V ++ I + TG I I QN IT A+K + ++
Sbjct: 71 KFPDMGTLWVEFCDEPSVGVKTMKTFVIHIQEKQFQTG-IFIYQNNITPSAMKLVPSIPP 129
Query: 482 FKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+E F L+VN+T H L PKH L +++K
Sbjct: 130 ATIETFHEAALVVNITHHDLVPKHIRLNEEEK 161
[155][TOP]
>UniRef100_Q3LW39 RNA polymerase I, II and III n=1 Tax=Bigelowiella natans
RepID=Q3LW39_BIGNA
Length = 204
Score = 55.8 bits (133), Expect = 2e-06
Identities = 36/150 (24%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
Frame = +2
Query: 137 TIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDP 316
+I +YYL + EML RGY + + + +F++ + + H D
Sbjct: 3 SISLEKYYLLKNNYYEMLYRRGYYVEKKVLNLNYSQFKKKCIEKKRYFKSFKIINHLNDT 62
Query: 317 SKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLL--NFKV 490
+ +I+ + G++ VN + + + + +I I + ++ Q A++ NF +
Sbjct: 63 NNKIIGFYNNKGLIDVNYL-GLKIEKAKTNNSNSIIFITKRYLSKQTNIALSHFRRNFNI 121
Query: 491 EIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
EIF ++L+N KH L PKH +L K+
Sbjct: 122 EIFFEYEILINPIKHFLVPKHVLLAPDIKR 151
[156][TOP]
>UniRef100_A2DNL3 RNA polymerase Rpb5, N-terminal domain containing protein n=1
Tax=Trichomonas vaginalis G3 RepID=A2DNL3_TRIVA
Length = 202
Score = 55.8 bits (133), Expect = 2e-06
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Frame = +2
Query: 155 YYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRILV 334
Y+ T +M++DRGY++ ++ S D+F +++ +P ++ +RIL
Sbjct: 9 YFRIYHTINQMMRDRGYNVDPSRLEISHDKFNKVYSGNPH----NLNECYSNMEGERILT 64
Query: 335 IFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFK-----VEIF 499
F + ++ I + +++ + +T A + NL N + +E F
Sbjct: 65 FFDLIERLDSKTIQTIIKNMDEAGVNRAIVIGPEGILTPTAAR--NLDNVRSSGKTIEFF 122
Query: 500 QITDLLVNVTKHVLKPKHQVLTDKQKK 580
++++N+T+H L PKH+VLT+ +K+
Sbjct: 123 SFDEVIINITEHELVPKHEVLTEDEKQ 149
[157][TOP]
>UniRef100_C7Z7I7 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7Z7I7_NECH7
Length = 234
Score = 55.8 bits (133), Expect = 2e-06
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 24/166 (14%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDRLRFTATHTTDPSKRIL 331
R + + +T EM+ DR Y + +E++ SLD FR + +PD R + PS+ +L
Sbjct: 17 RLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYC-NPDGSINRAKLQFSARPSESML 75
Query: 332 VIFTGPGIVK----------------------VNVVRNIAGQIVNRDTLTGLILIVQNQI 445
FT P V+ +R A ++ TG I++ +
Sbjct: 76 RKFTPPATADKPDPVPDCGPIWVEFLADKTFGVSQIRQFATYVITNHYKTG-IMVTHVPL 134
Query: 446 TSQALKAINLLNF--KVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ A K++ + K+E F DLLVN+T H L PKH +L+ +K
Sbjct: 135 SPAARKSLASVESLAKIECFLEDDLLVNITHHELVPKHVLLSRDEK 180
[158][TOP]
>UniRef100_B4GWF6 GL16452 n=1 Tax=Drosophila persimilis RepID=B4GWF6_DROPE
Length = 126
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Frame = +2
Query: 131 NGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQSPDVDR-----LRFT 295
N E ++ + RKT EM DRGY + E+ +++++F ++ G P R L
Sbjct: 6 NDEAEIYKLWHIRKTVFEMSHDRGYLVTQGELDQTVEQFTELFGDKPSEQRPMRSDLTMV 65
Query: 296 ATHTTDPSKRILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALK 463
TH DP R+LV F V V ++ A ++ R T G + + ++S+ LK
Sbjct: 66 LTHADDPKNRMLVFFPEEPKVAVRTIKAFANRMRPR-TFIGPSVCLGVVVSSKELK 120
[159][TOP]
>UniRef100_B6QBA7 RNA polymerase subunit n=1 Tax=Penicillium marneffei ATCC 18224
RepID=B6QBA7_PENMQ
Length = 236
Score = 55.1 bits (131), Expect = 4e-06
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTATHT-- 307
E R + + +T EML+DRGY I +E++ L +F S P +R+ A +
Sbjct: 15 EMARLWRTWRTVHEMLRDRGYEISEEELKIDLQDFTNKFSDSNGFPSRERMTIAAIPSEA 74
Query: 308 ------------TDPSK-----RILVIF----TGPGIVKVNVVRNIAGQIVNRDTLTGLI 424
TDP +I V F TG G +V ++ V+ I
Sbjct: 75 MKAKYTPLKKRPTDPDPVPDCGQIFVQFCEDTTGVGAKQVRQFNHL----VDEGNYHSGI 130
Query: 425 LIVQNQITSQALKAIN-LLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
I + I+ A++ +N + E FQ +DLLVN+T H L PKH +L+ ++K
Sbjct: 131 FITRTAISPSAVRLLNSAIGHICEHFQESDLLVNITHHELVPKHVLLSAEEK 182
[160][TOP]
>UniRef100_B6HAG0 Pc16g12690 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6HAG0_PENCW
Length = 234
Score = 55.1 bits (131), Expect = 4e-06
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Frame = +2
Query: 143 ESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQS---PDVDRLRFTAT---- 301
E R + + +T E+L DRGY + +E+ L++FR + PD +++ A
Sbjct: 14 EMTRLWRTFRTVYELLADRGYEVSDNELLLPLEDFRAKYSDPLGYPDRTKMKIQARPTET 73
Query: 302 ----HTTDPSKRILVIFTGPGIVKVNVVRNIAG----------QIVNRDTLTGLILIVQN 439
+T PSK G + V+ + +G +V+ + I I Q
Sbjct: 74 MKMKYTALPSKANPNPQPDCGTIYVDFCPDSSGVGTKQVRAFNHLVDENNFHTGIFITQT 133
Query: 440 QITSQALKAINLLNFKV-EIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
I+ A++ ++ + ++ E FQ DLLVN+T+H L PKH +L+ ++K
Sbjct: 134 PISPSAVRLLSGVPGRICEHFQEQDLLVNITRHELVPKHVLLSPEEK 180
[161][TOP]
>UniRef100_UPI000023E584 hypothetical protein FG09748.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023E584
Length = 253
Score = 54.7 bits (130), Expect = 5e-06
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 27/169 (15%)
Frame = +2
Query: 152 RYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIHGQ---SPDVDRLRFTATHTTDPSK 322
R + + +T EM+ DR Y + +E++ SLD FR + S +++ R + + PS
Sbjct: 17 RLWRAWRTVHEMVADREYELAEEEVKISLDRFRDEYCNPDGSININYSRNKLSFSARPST 76
Query: 323 RILVIFTGPGIVK----------------------VNVVRNIAGQIVNRDTLTGLIL--I 430
++ FT P V+ +R A +++ + TG+++ +
Sbjct: 77 AMMRKFTPPATAANPDPVADCGPIWIEFLADKTFGVSQIRAFASYVISNNYKTGIMITHV 136
Query: 431 VQNQITSQALKAINLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
+ ++L ++ L K+E F DLLVN+T H L PKH +L+ ++K
Sbjct: 137 PLSPAARRSLASVESLA-KIECFLEDDLLVNITHHELVPKHVLLSREEK 184
[162][TOP]
>UniRef100_Q59PF3 Putative uncharacterized protein RPB5 n=1 Tax=Candida albicans
RepID=Q59PF3_CANAL
Length = 179
Score = 54.7 bits (130), Expect = 5e-06
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 10/126 (7%)
Frame = +2
Query: 233 SLDEFRQIHGQS---PDVDRLRFTATHTTDPSKR------ILVIFTGPGIVKVNVVRNIA 385
+L+EFR S P ++ F AT T + ++ + V F V + +RN
Sbjct: 2 TLEEFRSKICDSMGTPQRKQMCFQATPTAETLEKFPETGSLWVEFCDEASVGIKTMRNFC 61
Query: 386 GQIVNRDTLTGLILIVQNQITSQALKAINLLN-FKVEIFQITDLLVNVTKHVLKPKHQVL 562
I ++ TG I I QN +T A K I ++ +EIFQ DL+VN+T H L PKH L
Sbjct: 62 IHITEKNFSTG-IFIYQNSMTPSANKLIPTVSPATIEIFQENDLIVNITHHELVPKHLKL 120
Query: 563 TDKQKK 580
++KK
Sbjct: 121 NREEKK 126
[163][TOP]
>UniRef100_C9S900 DNA-directed RNA polymerases I n=1 Tax=Verticillium albo-atrum
VaMs.102 RepID=C9S900_9PEZI
Length = 231
Score = 54.7 bits (130), Expect = 5e-06
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Frame = +2
Query: 128 DNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIH-GQSPDVDRLRFT--- 295
D + E R + + +T EM DRGY + EIQ SLD FR + V+R + T
Sbjct: 5 DGQSKEVVRAWRAWRTVHEMCADRGYELAESEIQISLDRFRHEYLAADGSVNRSKLTFSA 64
Query: 296 -------ATHTTDPSKR-----------ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGL 421
+ HT PS + G + V +R ++ G
Sbjct: 65 RPSSDMLSRHTPAPSAANPNPDPDCGPIYIEFIAEQGSLGVQHLRRFVQHVLEGHFKAG- 123
Query: 422 ILIVQNQITSQALK-AINLLNF-KVEIFQITDLLVNVTKHVLKPKHQVLTDKQK 577
I++ + +TS K ++L +F ++E F DLLVN+T H L PKH +L+ +K
Sbjct: 124 IMVTSSPLTSAGRKQLLSLESFARIECFLEEDLLVNITHHELVPKHILLSTDEK 177
[164][TOP]
>UniRef100_B0EA74 DNA-directed RNA polymerases I, II, and III subunit RPABC1,
putative n=1 Tax=Entamoeba dispar SAW760
RepID=B0EA74_ENTDI
Length = 204
Score = 54.3 bits (129), Expect = 7e-06
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Frame = +2
Query: 158 YLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIH---GQSPDVDRLRFTATHTTDPSKRI 328
Y + KT LEML+DRGY ++ +L+ F++ G+ D L D + I
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 329 LVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINL-LNFKVEIFQI 505
+V F +K +V+ + V + + I++ + +++S + + K E
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTE-VESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLE 126
Query: 506 TDLLVNVTKHVLKPKHQVLTDKQKK 580
+L+VNVT HVL P+H +L+ ++K+
Sbjct: 127 DELIVNVTHHVLVPQHILLSPEEKQ 151
[165][TOP]
>UniRef100_A4QW70 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4QW70_MAGGR
Length = 259
Score = 54.3 bits (129), Expect = 7e-06
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 25/162 (15%)
Frame = +2
Query: 170 KTTLEMLKDRGYSIPSDE----IQRSLDEFRQIHGQSPDVDRLRFTATHT---------- 307
+T +ML DRGY + +E I+R L +F +G + D +L F+A +
Sbjct: 18 RTIHQMLSDRGYELSEEECNISIERFLADFTDGNG-NVDQSKLTFSARPSDAMLKLHARI 76
Query: 308 ---TDPSKR-----ILVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALK 463
TDP I V F + V + ++ G IL+ Q ++S A +
Sbjct: 77 PTPTDPDPAPDCGSIWVEFINEEKIGVGRTKQFVEVLLQSGFRDG-ILVTQGALSSGARR 135
Query: 464 AINLLNF---KVEIFQITDLLVNVTKHVLKPKHQVLTDKQKK 580
A++ KVE F + DLLVN+T H L PKH +L+ +KK
Sbjct: 136 ALSATGSGDNKVEAFMLEDLLVNITHHELVPKHVMLSRVEKK 177
[166][TOP]
>UniRef100_C4LW54 RNA polymerase subunit Rpb5, putative n=1 Tax=Entamoeba histolytica
HM-1:IMSS RepID=C4LW54_ENTHI
Length = 204
Score = 53.9 bits (128), Expect = 9e-06
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Frame = +2
Query: 158 YLSRKTTLEMLKDRGYSIPSDEIQRSLDEFRQIH---GQSPDVDRLRFTATHTTDPSKRI 328
Y + KT LEML+DRGY ++ +L+ F++ G+ D L D + I
Sbjct: 8 YRAWKTVLEMLRDRGYITSEEDHNTTLEGFKERFYKGGEGVDHKELTIKVVKENDATDGI 67
Query: 329 LVIFTGPGIVKVNVVRNIAGQIVNRDTLTGLILIVQNQITSQALKAINL-LNFKVEIFQI 505
+V F +K +V+ + V + + I++ + +++S + + K E
Sbjct: 68 IVFFAEGVSLKTDVLGKYLTE-VESEHVKRAIIVYRGKLSSPVKQMMEQPREVKWEALLE 126
Query: 506 TDLLVNVTKHVLKPKHQVLTDKQKK 580
+L+VNVT H+L P+H +L+ ++K+
Sbjct: 127 DELIVNVTHHILVPQHILLSPEEKQ 151