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[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 164 bits (414), Expect = 4e-39
Identities = 78/98 (79%), Positives = 84/98 (85%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
KDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH QK S
Sbjct: 423 KDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSD 482
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
+ GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+
Sbjct: 483 FQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFY 520
[2][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 164 bits (414), Expect = 4e-39
Identities = 75/99 (75%), Positives = 85/99 (85%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
KDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS
Sbjct: 423 KDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASD 482
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ G VDV+EEL+LNVNVALMELYLHND +EF RVR F++
Sbjct: 483 FQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYI 521
[3][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 164 bits (414), Expect = 4e-39
Identities = 78/98 (79%), Positives = 84/98 (85%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
KDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH QK S
Sbjct: 1865 KDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSD 1924
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
+ GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+
Sbjct: 1925 FQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFY 1962
[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 164 bits (414), Expect = 4e-39
Identities = 75/99 (75%), Positives = 85/99 (85%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
KDAPTIE K FWELDFLKRKFLKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS
Sbjct: 1863 KDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASD 1922
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ G VDV+EEL+LNVNVALMELYLHND +EF RVR F++
Sbjct: 1923 FQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYI 1961
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 135 bits (340), Expect = 1e-30
Identities = 66/100 (66%), Positives = 80/100 (80%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKAS 178
KDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K KF +KA
Sbjct: 421 KDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKAC 480
Query: 179 QYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++
Sbjct: 481 DYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYI 520
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 135 bits (340), Expect = 1e-30
Identities = 66/100 (66%), Positives = 80/100 (80%), Gaps = 1/100 (1%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKAS 178
KDAPTIE KPF ELDFLKRKF + + G + APLD +AIFS L+WLTP K KF +KA
Sbjct: 1847 KDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKAC 1906
Query: 179 QYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++
Sbjct: 1907 DYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYI 1946
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 108 bits (271), Expect = 1e-22
Identities = 57/98 (58%), Positives = 69/98 (70%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Q
Sbjct: 431 KTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQ 490
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
VD + EL LNV VAL ELYLH + +EFQRVR+F+
Sbjct: 491 VE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFY 527
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 108 bits (271), Expect = 1e-22
Identities = 57/98 (58%), Positives = 69/98 (70%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TAIFS L+W+TP K Q
Sbjct: 1921 KTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQ 1980
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
VD + EL LNV VAL ELYLH + +EFQRVR+F+
Sbjct: 1981 VE-NVDTLYELALNVQVALTELYLHGNKEEFQRVRNFY 2017
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 77.8 bits (190), Expect = 4e-13
Identities = 42/99 (42%), Positives = 57/99 (57%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AIFSSLY++ P
Sbjct: 698 KNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQAIFSSLYYINP------------- 744
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ + + L LN VAL ELYLHND ++F VR+F+V
Sbjct: 745 ---QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYV 780
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 75.5 bits (184), Expect = 2e-12
Identities = 40/99 (40%), Positives = 58/99 (58%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 424 KNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP------------- 470
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ ++++ L LN VAL ELYLH D ++F VR+F+V
Sbjct: 471 ---QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYV 506
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 75.5 bits (184), Expect = 2e-12
Identities = 40/99 (40%), Positives = 58/99 (58%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 698 KNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP------------- 744
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ ++++ L LN VAL ELYLH D ++F VR+F+V
Sbjct: 745 ---QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYV 780
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 75.5 bits (184), Expect = 2e-12
Identities = 40/99 (40%), Positives = 58/99 (58%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 1910 KNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP------------- 1956
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ ++++ L LN VAL ELYLH D ++F VR+F+V
Sbjct: 1957 ---QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNFYV 1992
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 75.1 bits (183), Expect = 2e-12
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 698 KNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP------------- 744
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ +++ L LN VAL ELYLH D ++F VR+F+V
Sbjct: 745 ---QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYV 780
[14][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 75.1 bits (183), Expect = 2e-12
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 698 KNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP------------- 744
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ +++ L LN VAL ELYLH D ++F VR+F+V
Sbjct: 745 ---QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYV 780
[15][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 75.1 bits (183), Expect = 2e-12
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K++P + KP +LDFLKR F G + APLD+ AI+SSLY++ P
Sbjct: 424 KNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINP------------- 470
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
+ +++ L LN VAL ELYLH D ++F VR+F+V
Sbjct: 471 ---QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYV 506
[16][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 70.1 bits (170), Expect = 7e-11
Identities = 40/99 (40%), Positives = 52/99 (52%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K +PT+ KP LDFLKR F D G + APLD TAI+SSL+W+
Sbjct: 1619 KLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAIYSSLHWVAGRGQ---------- 1668
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
DV+ L N AL+E++ H D EF +RSF+V
Sbjct: 1669 -----DVMSALKDNARSALIEMWAHQDKAEFVELRSFYV 1702
[17][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 67.4 bits (163), Expect = 5e-10
Identities = 38/98 (38%), Positives = 56/98 (57%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K TI +P EL+FLKR F++ G+I APL+ +I SSL ++
Sbjct: 1874 KSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLVYIR-------------- 1919
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
S D++++L+ NVN AL+ELYLH D F+ VR+F+
Sbjct: 1920 -SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAFY 1956
[18][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/99 (39%), Positives = 56/99 (56%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 414 KSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR-------------- 459
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
S D++++LV NVN AL+ELYLH D + + VR F++
Sbjct: 460 -SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYL 497
[19][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 65.5 bits (158), Expect = 2e-09
Identities = 39/99 (39%), Positives = 56/99 (56%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K TI +P EL+FLKR F K + G+I APL+ +I SSL ++
Sbjct: 1873 KSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSIMSSLVYIR-------------- 1918
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
S D++++LV NVN AL+ELYLH D + + VR F++
Sbjct: 1919 -SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFYL 1956
[20][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 65.1 bits (157), Expect = 2e-09
Identities = 37/98 (37%), Positives = 52/98 (53%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T H
Sbjct: 415 KTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI------ 468
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
L NV+ AL+ELYLH + F +R F+
Sbjct: 469 ---------ALQNNVHNALLELYLHGNETWFNHLRDFY 497
[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 65.1 bits (157), Expect = 2e-09
Identities = 39/99 (39%), Positives = 52/99 (52%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K +P +E KP +LDFLKR FL D+G + LD T I+SSL +L
Sbjct: 1922 KLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCIYSSLLYLR-------------- 1967
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
S + D I L NV AL ELY D +EF +R+F++
Sbjct: 1968 -SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYL 2005
[22][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 65.1 bits (157), Expect = 2e-09
Identities = 37/98 (37%), Positives = 52/98 (53%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K A IE KP +LDFLKR+F KL+ G + APLD+ ++++SL +T H
Sbjct: 1802 KTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI------ 1855
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 295
L NV+ AL+ELYLH + F +R F+
Sbjct: 1856 ---------ALQNNVHNALLELYLHGNETWFNHLRDFY 1884
[23][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 64.7 bits (156), Expect = 3e-09
Identities = 38/99 (38%), Positives = 56/99 (56%)
Frame = +2
Query: 2 KDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQ 181
K TI +P EL+FLKR K + G+I APL+ +I SSL ++
Sbjct: 1875 KSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSIMSSLVYIR-------------- 1920
Query: 182 YSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFFV 298
S D++++LV NVN AL+EL+LH D + F VR+F++
Sbjct: 1921 -SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYL 1958