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[1][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 281 bits (718), Expect = 3e-74
Identities = 143/192 (74%), Positives = 163/192 (84%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
T EELE + +FS SI RS RQ ERKARR RAA KA+ VVS + GST R+KRV QEV
Sbjct: 203 TLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSLQEV 262
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
YSDPLR LR TT +RLLTA+EE++LSEGIQDL+KLEKLQEDL E+FG +PTFAQWA
Sbjct: 263 DYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAA 322
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVDQKTLR+R NYG+ CK+KMIKSNIRLVIS+AKNYQG+GM++QDLVQEGCRGLVRGAE
Sbjct: 323 AGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAE 382
Query: 542 KYDASKGFKFST 577
K+DASKGFKFST
Sbjct: 383 KFDASKGFKFST 394
[2][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 279 bits (714), Expect = 1e-73
Identities = 142/192 (73%), Positives = 164/192 (85%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
T +ELE Q+Q S+ I RS RQTERKARR RA KAA++VVS K GST +KKR QEV
Sbjct: 194 THKELELLQKQLSEGIAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEV 253
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
YSDPLR LR TT +RLLTASEE++LS IQDL+KLE+LQE+LAE++GGQPTFAQWA
Sbjct: 254 DYSDPLRYLRGTTSTSRLLTASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAA 313
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVDQ+TLRKR+N+G CK+KMIKSNIRLVIS+AKNYQG+GM+LQDLVQEGCRGLVRGAE
Sbjct: 314 AGVDQRTLRKRINHGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 373
Query: 542 KYDASKGFKFST 577
K+DASKGFKFST
Sbjct: 374 KFDASKGFKFST 385
[3][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
Length = 567
Score = 277 bits (708), Expect = 5e-73
Identities = 139/192 (72%), Positives = 163/192 (84%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
T EEL Q+Q S+ I RS RQTERKARR RAA KAA NVVS K GST +KKRV QEV
Sbjct: 192 TQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAAANVVSVKSGSTSKKKRVPLQEV 251
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
SDPLR R + ++RLL+A+EEV+LSEGIQDL+KLE+++E+L E+FGG+P+FAQWA
Sbjct: 252 DQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAA 311
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVDQ TLRKRLNYG+ CK+KMIKSN+RLVIS+AKNYQG+GM+LQDLVQEGCRGLVRGAE
Sbjct: 312 AGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAE 371
Query: 542 KYDASKGFKFST 577
K+DASKGFKFST
Sbjct: 372 KFDASKGFKFST 383
[4][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 266 bits (679), Expect = 1e-69
Identities = 133/192 (69%), Positives = 156/192 (81%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
T EEL+ + + +SI RS RQ ERKARR RAA K A+NVVS K GS RKKR QEV
Sbjct: 200 TIEELQLLEVELDESITVRSTRQGERKARRARAAEKVASNVVSVKVGSNSRKKRTSVQEV 259
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
YSDPLR LR T ++RLLT+SEE +LS GIQDL+KLEKL ++L +FG P+F QWA
Sbjct: 260 DYSDPLRYLRGATNSSRLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAA 319
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AG+DQ+TLR+RLN+G FCK+KMIKSN+RLVIS+AKNYQGSGM+LQDLVQEGCRGLVRGAE
Sbjct: 320 AGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAE 379
Query: 542 KYDASKGFKFST 577
K+DASKGFKFST
Sbjct: 380 KFDASKGFKFST 391
[5][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
Length = 564
Score = 262 bits (669), Expect = 2e-68
Identities = 133/192 (69%), Positives = 158/192 (82%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
T EEL ++Q S+SI RS RQT+RKA+R RAA KAA N V K GS +KKRV QEV
Sbjct: 189 THEELALLEKQLSESIVVRSKRQTQRKAKRARAAEKAAANFVFMKSGSACKKKRVPVQEV 248
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
SDPLR R + ++RLL+A+EEV+LSEGIQDL+KLE+++E+L E+FGG+PTFAQWA
Sbjct: 249 DQSDPLRFFRGASTSSRLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAA 308
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
A VDQ TLRKRLNY + CK+KMIKSNIRLVIS+AKNYQG+GM+LQDLVQEGCRGLVRG E
Sbjct: 309 ARVDQITLRKRLNYAILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVE 368
Query: 542 KYDASKGFKFST 577
K+DASKGFKFST
Sbjct: 369 KFDASKGFKFST 380
[6][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
Length = 572
Score = 247 bits (631), Expect = 4e-64
Identities = 125/190 (65%), Positives = 156/190 (82%)
Frame = +2
Query: 8 EELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY 187
EE+E +EQ S S+ RS RQTERKARR + K A+ + S K GS+ +KKR+ QEV +
Sbjct: 197 EEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDH 256
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DPLR LR TT +++LLT EE +LS GIQDL+KLE+LQ +L E+ G QPTFAQWA+ AG
Sbjct: 257 NDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAG 316
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
VDQK+LR+R+++G CK+KMIKSNIRLVIS+AKNYQG+GM+LQDLVQEGCRGLVRGAEK+
Sbjct: 317 VDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 376
Query: 548 DASKGFKFST 577
DA+KGFKFST
Sbjct: 377 DATKGFKFST 386
[7][TOP]
>UniRef100_Q8GWC1 Putative plastid RNA polymerase sigma-subunit SIG1 n=1
Tax=Arabidopsis thaliana RepID=Q8GWC1_ARATH
Length = 572
Score = 246 bits (627), Expect = 1e-63
Identities = 124/190 (65%), Positives = 155/190 (81%)
Frame = +2
Query: 8 EELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY 187
EE+E +EQ S + RS RQTERKARR + K A+ + S K GS+ +KKR+ QEV +
Sbjct: 197 EEVELLEEQPSVGLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDH 256
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DPLR LR TT +++LLT EE +LS GIQDL+KLE+LQ +L E+ G QPTFAQWA+ AG
Sbjct: 257 NDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAG 316
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
VDQK+LR+R+++G CK+KMIKSNIRLVIS+AKNYQG+GM+LQDLVQEGCRGLVRGAEK+
Sbjct: 317 VDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 376
Query: 548 DASKGFKFST 577
DA+KGFKFST
Sbjct: 377 DATKGFKFST 386
[8][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
Length = 574
Score = 242 bits (618), Expect = 1e-62
Identities = 125/192 (65%), Positives = 156/192 (81%), Gaps = 2/192 (1%)
Frame = +2
Query: 8 EELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY 187
EE+E +EQ S S+ RS RQTERKARR + K A+ + S K GS+ +KKR+ QEV +
Sbjct: 197 EEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDH 256
Query: 188 SDPLRSLRSTTRATRL--LTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
+DPLR LR TT +++L LT EE +LS GIQDL+KLE+LQ +L E+ G QPTFAQWA+
Sbjct: 257 NDPLRYLRMTTSSSKLKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASA 316
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVDQK+LR+R+++G CK+KMIKSNIRLVIS+AKNYQG+GM+LQDLVQEGCRGLVRGAE
Sbjct: 317 AGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 376
Query: 542 KYDASKGFKFST 577
K+DA+KGFKFST
Sbjct: 377 KFDATKGFKFST 388
[9][TOP]
>UniRef100_Q9MTH3 Sigma factor 2 n=1 Tax=Sinapis alba RepID=Q9MTH3_SINAL
Length = 575
Score = 241 bits (615), Expect = 3e-62
Identities = 126/196 (64%), Positives = 157/196 (80%), Gaps = 5/196 (2%)
Frame = +2
Query: 5 SEELEDAQEQ----FSDSIDARSGRQTERKARRVRAAGKAATNVVS-FKFGSTGRKKRVR 169
S++L A++Q S S RS RQTERKARRV+ K A+ + S K GS+ RKKRV
Sbjct: 191 SDDLTPAEKQEVEKLSVSSAVRSTRQTERKARRVKGLEKTASGMQSSVKTGSSSRKKRVA 250
Query: 170 TQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQ 349
+QE+ ++DPLR LR TT +++LLTA EE +LSEGIQDL+KLE+LQ +L E+ G QPTF+Q
Sbjct: 251 SQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQ 310
Query: 350 WATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLV 529
WA+ AGVD+KTLRKR+ +G CK++MIKSNIRLVIS+AKNYQG+GM QDLVQEGCRGLV
Sbjct: 311 WASAAGVDKKTLRKRITHGTQCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLV 370
Query: 530 RGAEKYDASKGFKFST 577
RGAEK+DA+KGFKFST
Sbjct: 371 RGAEKFDATKGFKFST 386
[10][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 208 bits (530), Expect = 2e-52
Identities = 109/192 (56%), Positives = 144/192 (75%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNV-VSFKFGSTGRKKRVRTQEV 181
+E+ DA Q++++I +S RQ+ERKARR RAA KA+T + S K + +KKR +
Sbjct: 163 AEDELDAYAQYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSS 222
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
+ PL SL T RLLTA EEV+ SEGIQDL+KLE +Q +L E GGQPTF+QWAT
Sbjct: 223 SMN-PLGSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATA 280
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVD+KTLRKRLNYG++CK +M+ SN+RLVIS+A+ ++G GM DL+QEG +GL+RGAE
Sbjct: 281 AGVDEKTLRKRLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAE 340
Query: 542 KYDASKGFKFST 577
K+D+SKGF+FST
Sbjct: 341 KFDSSKGFRFST 352
[11][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 207 bits (528), Expect = 4e-52
Identities = 112/192 (58%), Positives = 142/192 (73%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
S+E E D Q SI +S RQTER+ARR RAA KAAT V + +T KK+
Sbjct: 187 SDEAELDGDTQDIPSIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGAS 246
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
++PL SL T RLLTA EEV+ SEGIQDL+KLE +Q +LAE GGQPTFAQWAT
Sbjct: 247 SGTNPLGSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATA 305
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVD++TLRKRL++G++CK +M+ SN+RLVIS+A+ ++G GM L DL+QEG +GL+RGAE
Sbjct: 306 AGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAE 365
Query: 542 KYDASKGFKFST 577
K+DASKGF+FST
Sbjct: 366 KFDASKGFRFST 377
[12][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 207 bits (528), Expect = 4e-52
Identities = 112/192 (58%), Positives = 142/192 (73%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
S+E E D Q SI +S RQTER+ARR RAA KAAT V + +T KK+
Sbjct: 187 SDEAELDGDTQDIPSIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGAS 246
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
++PL SL T RLLTA EEV+ SEGIQDL+KLE +Q +LAE GGQPTFAQWAT
Sbjct: 247 SGTNPLGSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATA 305
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVD++TLRKRL++G++CK +M+ SN+RLVIS+A+ ++G GM L DL+QEG +GL+RGAE
Sbjct: 306 AGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAE 365
Query: 542 KYDASKGFKFST 577
K+DASKGF+FST
Sbjct: 366 KFDASKGFRFST 377
[13][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 206 bits (525), Expect = 8e-52
Identities = 109/186 (58%), Positives = 138/186 (74%)
Frame = +2
Query: 20 DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPL 199
D Q SI +S RQTER+ARR RAA KAAT V + +T KK+ ++PL
Sbjct: 192 DGDTQDIPSIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPL 251
Query: 200 RSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQK 379
SL T RLLTA EEV+ SEGIQDL+KLE +Q +LAE GGQPTFAQWAT AGVD++
Sbjct: 252 GSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDER 310
Query: 380 TLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASK 559
TLRKRL++G++CK +M+ SN+RLVIS+A+ ++G GM L DL+QEG +GL+RGAEK+DASK
Sbjct: 311 TLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASK 370
Query: 560 GFKFST 577
GF+FST
Sbjct: 371 GFRFST 376
[14][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 205 bits (521), Expect = 2e-51
Identities = 111/192 (57%), Positives = 141/192 (73%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
S+E E D Q SI +S RQTE +ARR RAA KAAT V + +T KK+
Sbjct: 187 SDEAELDGDTQDIPSIAVKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGAS 246
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
++PL SL T RLLTA EEV+ SEGIQDL+KLE +Q +LAE GGQPTFAQWAT
Sbjct: 247 SGTNPLGSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATA 305
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVD++TLRKRL++G++CK +M+ SN+RLVIS+A+ ++G GM L DL+QEG +GL+RGAE
Sbjct: 306 AGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAE 365
Query: 542 KYDASKGFKFST 577
K+DASKGF+FST
Sbjct: 366 KFDASKGFRFST 377
[15][TOP]
>UniRef100_C5WQ19 Putative uncharacterized protein Sb01g039810 n=1 Tax=Sorghum
bicolor RepID=C5WQ19_SORBI
Length = 528
Score = 194 bits (494), Expect = 3e-48
Identities = 104/193 (53%), Positives = 139/193 (72%), Gaps = 2/193 (1%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKF--GSTGRKKRVRTQE 178
SE+ +D S ++ +S R+TERKARRVRAA KAA S S+ RKKR++ +
Sbjct: 154 SEDDDDDDSGHSIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGCQ 213
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
PL T RLLTA +EV+ SEGIQDL+KLE +Q+++A+ GG+PTF+QWA
Sbjct: 214 T----PLGCFYKMT-GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAA 268
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
AG D+ TLR+RLN+GV+CK +M+KSN+RLVIS+AK ++G GM DL+QEG +GL+RGA
Sbjct: 269 AAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGA 328
Query: 539 EKYDASKGFKFST 577
EK+DASKGF+FST
Sbjct: 329 EKFDASKGFRFST 341
[16][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 190 bits (483), Expect = 6e-47
Identities = 105/195 (53%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVS---FKFGSTGRKKRVRT 172
S+E E D EQ + +S RQ+ER+ARRVRAA KAA + S+ RKKR++
Sbjct: 164 SDESEVDDDEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLKG 223
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
PL T RLLTA +EV+ S+GIQDL+KLE +Q++LA GG+PTF+QW
Sbjct: 224 CR----SPLGCFYKMT-GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQW 278
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A AG D+ TLRKRLNYG+ CK M+KSN+RLVIS+A+ ++G GM DL+QEG +GLVR
Sbjct: 279 AEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVR 338
Query: 533 GAEKYDASKGFKFST 577
GAEK+DASKGF+FST
Sbjct: 339 GAEKFDASKGFRFST 353
[17][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 190 bits (483), Expect = 6e-47
Identities = 105/195 (53%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVS---FKFGSTGRKKRVRT 172
S+E E D EQ + +S RQ+ER+ARRVRAA KAA + S+ RKKR++
Sbjct: 121 SDESEVDDDEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLKG 180
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
PL T RLLTA +EV+ S+GIQDL+KLE +Q++LA GG+PTF+QW
Sbjct: 181 CR----SPLGCFYKMT-GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQW 235
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A AG D+ TLRKRLNYG+ CK M+KSN+RLVIS+A+ ++G GM DL+QEG +GLVR
Sbjct: 236 AEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVR 295
Query: 533 GAEKYDASKGFKFST 577
GAEK+DASKGF+FST
Sbjct: 296 GAEKFDASKGFRFST 310
[18][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 190 bits (482), Expect = 8e-47
Identities = 105/195 (53%), Positives = 135/195 (69%), Gaps = 4/195 (2%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVS---FKFGSTGRKKRVRT 172
S+E E D EQ + +S RQ+ER+ARRVRAA KAA + S+ RKKR++
Sbjct: 164 SDESEVDDDEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLKG 223
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
PL T RLLTA +EV+ S+GIQDL+KLE +Q++LA GG+PTF+QW
Sbjct: 224 CR----SPLGCFYKMT-GWRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQW 278
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A AG D+ TLRKRLNYG+ CK M+KSN+RLVIS+A+ ++G GM DL+QEG +GLVR
Sbjct: 279 AEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVR 338
Query: 533 GAEKYDASKGFKFST 577
GAEK+DASKGF+FST
Sbjct: 339 GAEKFDASKGFRFST 353
[19][TOP]
>UniRef100_Q9ZPL1 Sigma factor SIG2B n=1 Tax=Zea mays RepID=Q9ZPL1_MAIZE
Length = 527
Score = 186 bits (473), Expect = 9e-46
Identities = 101/194 (52%), Positives = 139/194 (71%), Gaps = 3/194 (1%)
Frame = +2
Query: 5 SEELEDAQEQ-FSDSIDARSGRQTERKARRVRAAGKAATNVVSFK--FGSTGRKKRVRTQ 175
S+E ED + S ++ +S R++ER+ARRVRAA K A S K S+ R+KR++
Sbjct: 152 SDESEDDDDGGHSIAVTVKSARRSERRARRVRAAMKTAKCSSSMKPVGASSTRRKRLKG- 210
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWA 355
PL L T RLLTA +EV+ SEGIQDL+KLE +Q+++A+ G+PTF+QWA
Sbjct: 211 ---CLTPLGCLYKMT-GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWA 266
Query: 356 TMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRG 535
AG D+ TLR+RLN+GV+CK +M+KSN+RLVIS+AK ++G GM DL+Q+G +GL+RG
Sbjct: 267 AAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRG 326
Query: 536 AEKYDASKGFKFST 577
AEK+DASKGF+FST
Sbjct: 327 AEKFDASKGFRFST 340
[20][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 177 bits (450), Expect = 4e-43
Identities = 99/179 (55%), Positives = 128/179 (71%), Gaps = 1/179 (0%)
Frame = +2
Query: 44 SIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRK-KRVRTQEVHYSDPLRSLRSTT 220
+I ARS RQ ER+ARR RA+ KAA+ + + RK K+ + + H SD +R LR +
Sbjct: 134 NITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLLRDWS 193
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
++RLLTASEEV+LS GIQDLIKL++++ EK G +PT AQWA + GVDQKTL+ RL
Sbjct: 194 -SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLE 252
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G +K+I N+RLVISVAKNYQ G+SLQDL+Q G GL+R AEK+D S+GFKFST
Sbjct: 253 VGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFST 311
[21][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 177 bits (450), Expect = 4e-43
Identities = 99/179 (55%), Positives = 128/179 (71%), Gaps = 1/179 (0%)
Frame = +2
Query: 44 SIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRK-KRVRTQEVHYSDPLRSLRSTT 220
+I ARS RQ ER+ARR RA+ KAA+ + + RK K+ + + H SD +R LR +
Sbjct: 231 NITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLLRDWS 290
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
++RLLTASEEV+LS GIQDLIKL++++ EK G +PT AQWA + GVDQKTL+ RL
Sbjct: 291 -SSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLE 349
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G +K+I N+RLVISVAKNYQ G+SLQDL+Q G GL+R AEK+D S+GFKFST
Sbjct: 350 VGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFST 408
[22][TOP]
>UniRef100_Q53KH7 Sigma-70 region 3, putative n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH7_ORYSJ
Length = 368
Score = 169 bits (429), Expect = 1e-40
Identities = 97/181 (53%), Positives = 123/181 (67%), Gaps = 1/181 (0%)
Frame = +2
Query: 5 SEELE-DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
S+E E D Q SI +S RQTER+ARR RAA KAAT V + +T KK+
Sbjct: 187 SDEAELDGDTQDIPSIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGAS 246
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
++PL SL T RLLTA EEV+ SEGIQDL+KLE +Q +LAE GGQPTFAQWAT
Sbjct: 247 SGTNPLGSLWKMT-GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATA 305
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
AGVD++TLRKRL++G++CK +M+ SN+RLVIS+A+ ++G GM L DL+Q G G
Sbjct: 306 AGVDERTLRKRLDHGIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQVFITGRDAGPY 365
Query: 542 K 544
K
Sbjct: 366 K 366
[23][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 167 bits (424), Expect = 4e-40
Identities = 84/145 (57%), Positives = 108/145 (74%)
Frame = +2
Query: 143 STGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEK 322
S+ RKKR++ PL T RLLTA +EV+ S+GIQDL+KLE +Q++LA
Sbjct: 17 SSARKKRLKGCR----SPLGCFYKMT-GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHY 71
Query: 323 FGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDL 502
GG+PTF+QWA AG D+ TLRKRLNYG+ CK M+KSN+RLVIS+A+ ++G GM DL
Sbjct: 72 NGGEPTFSQWAEAAGTDENTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDL 131
Query: 503 VQEGCRGLVRGAEKYDASKGFKFST 577
+QEG +GLVRGAEK+DASKGF+FST
Sbjct: 132 IQEGIQGLVRGAEKFDASKGFRFST 156
[24][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 158 bits (399), Expect = 3e-37
Identities = 88/194 (45%), Positives = 121/194 (62%), Gaps = 3/194 (1%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRA---AGKAATNVVSFKFGSTGRKKRVRTQ 175
SE+ +D+ + +S R+ ER+ RR RA A K AT++ S +K ++
Sbjct: 200 SEDEDDSNSLPQIQVAVKSKRKGERRKRRERALERAEKVATDLASAPPLPKPKKPQLAAD 259
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWA 355
SDP+R+ T+LLTA EEV LS IQDL+KLE ++ +L + G T +W+
Sbjct: 260 P---SDPVRAYLRDIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWS 316
Query: 356 TMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRG 535
G++Q RL G F K+KM+ SN+RLV+S+AKNYQG GM+LQDL+QEG GLVRG
Sbjct: 317 RAVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRG 376
Query: 536 AEKYDASKGFKFST 577
AEK+D +KGFKFST
Sbjct: 377 AEKFDPTKGFKFST 390
[25][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 147 bits (371), Expect = 6e-34
Identities = 80/190 (42%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = +2
Query: 11 ELEDAQEQFSD-SIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY 187
E D Q D ++ +S R+ ER +R RA KA + K +
Sbjct: 208 ETADGLPQTMDFNVAVKSKRKKERMRKRERALEKAEKTASALASAPPVPKPKKLQIMRTP 267
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
SDP+RS + T+LL+ASEEV LS IQD++KLEK++ +L G +PT ++W+
Sbjct: 268 SDPIRSYLRDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVS 327
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+DQ +L R+ G K+K++ SN+RLV+S+ KNYQG GM+L DL+QEG GL+RGAEK+
Sbjct: 328 LDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKF 387
Query: 548 DASKGFKFST 577
D G+KFST
Sbjct: 388 DPEMGYKFST 397
[26][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 146 bits (369), Expect = 1e-33
Identities = 80/183 (43%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Frame = +2
Query: 44 SIDARSGRQTERKARRVRAAGKA---ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRS 214
++ +S R+ ER+ +R RA KA AT + S +K ++ + +DP+R+
Sbjct: 225 NVAVKSKRKGERRKKRERALEKAEKLATALASAPPAPRPKKPQISQEP---TDPVRAYLR 281
Query: 215 TTRATRLLTASEEVKLSEGIQ--DLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLR 388
T+LLTASEEV LS IQ DL+ LEK++ DL + G +P+ +W+ G++Q
Sbjct: 282 DIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFE 341
Query: 389 KRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFK 568
R+ G + K+KM+ SN+RLV+S+ KNYQG GM+L DL+QEG GL+RGAEK+D KGFK
Sbjct: 342 LRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFK 401
Query: 569 FST 577
FST
Sbjct: 402 FST 404
[27][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 130 bits (328), Expect = 6e-29
Identities = 70/176 (39%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Frame = +2
Query: 53 ARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYS-DPLRSLRSTTRAT 229
A G T+ KA R A GKA R++ +T++ HY+ D +R
Sbjct: 60 AEEGTATKAKATRGAAKGKA-------------RRRTAQTKKKHYTEDSIRLYLQEIGRI 106
Query: 230 RLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGV 409
RLL A EE++L+ I DL++LE++++++ ++ +PT A WA + R+RL G
Sbjct: 107 RLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGR 166
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K+KM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 167 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 222
[28][TOP]
>UniRef100_A9RG56 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RG56_PHYPA
Length = 581
Score = 129 bits (323), Expect = 2e-28
Identities = 75/191 (39%), Positives = 110/191 (57%), Gaps = 11/191 (5%)
Frame = +2
Query: 38 SDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY--SDPLRSLR 211
S ++ +S R+ ER +R RA KA V+F S+ + + + SDP+ S
Sbjct: 207 SRNVAVKSNRKNERFRKRERALEKAGK--VAFALASSPPVPKADKSLIKHRLSDPICSYL 264
Query: 212 STTRATRLLTASEEVKLSEGIQDL---------IKLEKLQEDLAEKFGGQPTFAQWATMA 364
+ ++LLTA EEV LS IQ +KLEK++ +L G +PT ++W+
Sbjct: 265 RDVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAV 324
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
G++Q R+ G K+K++ SN+RLV+S+ KNYQG GM+L DL+Q G GL+RGAEK
Sbjct: 325 GMNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEK 384
Query: 545 YDASKGFKFST 577
+D GFKFST
Sbjct: 385 FDPEMGFKFST 395
[29][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 128 bits (322), Expect = 3e-28
Identities = 66/145 (45%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Frame = +2
Query: 146 TGRKKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEK 322
T R+K T++ Y+ D +R RLL A EE++L+ I DL++LE+++E L E
Sbjct: 49 TSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEH 108
Query: 323 FGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDL 502
PT +WA AG+ K R+RL +G K+KM++SN+RLV+S+AK Y G+S QDL
Sbjct: 109 ESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 168
Query: 503 VQEGCRGLVRGAEKYDASKGFKFST 577
+QEG GL+R AEK+D KG+KFST
Sbjct: 169 IQEGSLGLIRAAEKFDHEKGYKFST 193
[30][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 127 bits (319), Expect = 6e-28
Identities = 66/143 (46%), Positives = 97/143 (67%), Gaps = 2/143 (1%)
Frame = +2
Query: 155 KKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFG-- 328
K+ RT + +D +RS + LL A +EV+L++ IQDL+ LE ++E+L E+ G
Sbjct: 3 KQLTRTSKRLATDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPG 62
Query: 329 GQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQ 508
+ T QWA+ AG++ + L +RL G K +MI++N+RLV+S+AK Y S MS QDL+Q
Sbjct: 63 AEVTDYQWASAAGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQ 122
Query: 509 EGCRGLVRGAEKYDASKGFKFST 577
EGC GL+RGAEK+D +G+KFST
Sbjct: 123 EGCVGLIRGAEKFDFQRGYKFST 145
[31][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 126 bits (316), Expect = 1e-27
Identities = 65/150 (43%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Frame = +2
Query: 134 KFGSTGR-KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQE 307
K GS G+ ++R +T++ HY+ D +R RLL A EE++L+ I DL++LE+++E
Sbjct: 56 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 308 DLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGM 487
L E + +P +WA + R+RL G K+KM++SN+RLV+S+AK Y G+
Sbjct: 116 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 488 SLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFST 205
[32][TOP]
>UniRef100_A7P4G3 Chromosome chr4 scaffold_6, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P4G3_VITVI
Length = 561
Score = 124 bits (311), Expect = 5e-27
Identities = 65/179 (36%), Positives = 116/179 (64%)
Frame = +2
Query: 41 DSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTT 220
D + RSG++ ERK++R RA KA N+ +F S +K V S R+L S
Sbjct: 204 DKVVVRSGKKEERKSKRERALEKA-DNIYAFPLPSKTIRKGPGRPSV--STVKRTLNS-- 258
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
R RL+ A E ++S+G++ + LE+++ L E+ G + + WA AGVD+K L+++L
Sbjct: 259 RRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQ 318
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+G +C++++++S LV+ +A+NY+G G++ +D++Q G G+++GAE++D +KG++FST
Sbjct: 319 FGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 377
[33][TOP]
>UniRef100_A5BHR4 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5BHR4_VITVI
Length = 611
Score = 124 bits (311), Expect = 5e-27
Identities = 65/179 (36%), Positives = 116/179 (64%)
Frame = +2
Query: 41 DSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTT 220
D + RSG++ ERK++R RA KA N+ +F S +K V S R+L S
Sbjct: 254 DKVVVRSGKKEERKSKRERALEKA-DNIYAFPLPSKTIRKGPGRPSV--STVKRTLNS-- 308
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
R RL+ A E ++S+G++ + LE+++ L E+ G + + WA AGVD+K L+++L
Sbjct: 309 RRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQ 368
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+G +C++++++S LV+ +A+NY+G G++ +D++Q G G+++GAE++D +KG++FST
Sbjct: 369 FGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 427
[34][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 124 bits (310), Expect = 7e-27
Identities = 69/181 (38%), Positives = 100/181 (55%)
Frame = +2
Query: 35 FSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRS 214
F D ID + E V GK + + + G+KK + D +R
Sbjct: 23 FIDDIDETGEEELEEAV--VEENGKKTRKLSATRRRDAGKKKP------YTEDSIRIYLQ 74
Query: 215 TTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKR 394
RLL A EE++L+ I DL++LE+L+E L G P+ +WA G++ ++R
Sbjct: 75 EIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDKEWAQQVGMELPAFQRR 134
Query: 395 LNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFS 574
L G K+KM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFS
Sbjct: 135 LYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 194
Query: 575 T 577
T
Sbjct: 195 T 195
[35][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 123 bits (309), Expect = 9e-27
Identities = 70/172 (40%), Positives = 106/172 (61%), Gaps = 2/172 (1%)
Frame = +2
Query: 68 QTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTAS 247
QT+ + R V + + + G+ KR T D +RS + LL A
Sbjct: 170 QTKERVRGVNLEPRKVQKQSAMRIGN----KRPST------DSMRSYLKDIGSVTLLNAG 219
Query: 248 EEVKLSEGIQDLIKLEKLQEDLAEKFGG--QPTFAQWATMAGVDQKTLRKRLNYGVFCKE 421
+EV+L++ IQDL+ LE ++E+L E+ G + + +QWA AG++ LR+RL+ G K
Sbjct: 220 QEVELAKRIQDLMHLESIRENLIEETGPGVELSESQWAAAAGLNVSALRQRLHDGKAAKN 279
Query: 422 KMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+MI++N+RLV+S+AK Y + MS QDL+QEGC GL+RGAEK+D +G+KFST
Sbjct: 280 EMIQANLRLVVSIAKKYANTNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFST 331
[36][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 122 bits (307), Expect = 2e-26
Identities = 67/188 (35%), Positives = 102/188 (54%)
Frame = +2
Query: 14 LEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSD 193
++D E + ++ +K R+V A + G+KK + D
Sbjct: 23 IDDIDETAEEELEEAVADDNSKKTRKVTATRRR----------DAGKKKP------YTED 66
Query: 194 PLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD 373
+R RLL A EE++L+ I DL++LE+L+E L G P+ +WA G++
Sbjct: 67 SIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDKEWAEQVGME 126
Query: 374 QKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDA 553
++RL G K+KM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D
Sbjct: 127 LPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 186
Query: 554 SKGFKFST 577
KG+KFST
Sbjct: 187 EKGYKFST 194
[37][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 122 bits (307), Expect = 2e-26
Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 1/189 (0%)
Frame = +2
Query: 14 LEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYS- 190
+ED Q D ++++S + E K+ V + ++R + ++ HY+
Sbjct: 38 IEDDDSQEEDYVESQSEEEDESKSEGVAKS-----------------RRRTQAKKKHYTE 80
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +R RLL A EE++L+ I DL++LE+++E L E +P +WA+ +
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDM 140
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
R+RL G K+KM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D
Sbjct: 141 ALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 200
Query: 551 ASKGFKFST 577
KG+KFST
Sbjct: 201 HEKGYKFST 209
[38][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 122 bits (305), Expect = 3e-26
Identities = 61/142 (42%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Frame = +2
Query: 155 KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
++R ++++ HY+ D +R RLL A EE++L+ I DL++LE+++E L+EK
Sbjct: 67 RRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLER 126
Query: 332 QPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQE 511
P ++WA + R RL+ G K+KM++SN+RLV+S+AK Y G+S QDL+QE
Sbjct: 127 DPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 186
Query: 512 GCRGLVRGAEKYDASKGFKFST 577
G GL+R AEK+D KG+KFST
Sbjct: 187 GSLGLIRAAEKFDHEKGYKFST 208
[39][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 121 bits (304), Expect = 3e-26
Identities = 64/146 (43%), Positives = 94/146 (64%), Gaps = 3/146 (2%)
Frame = +2
Query: 149 GRKKRVRTQ--EVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAE 319
GR R R+Q + HY+ D +R RLL A EE++L+ I DL++LE+++E L +
Sbjct: 51 GRSTRRRSQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYD 110
Query: 320 KFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQD 499
K +P +WA + ++ R RL+ G K+KM++SN+RLV+S+AK Y G+S QD
Sbjct: 111 KLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 170
Query: 500 LVQEGCRGLVRGAEKYDASKGFKFST 577
L+QEG GL+R AEK+D KG+KFST
Sbjct: 171 LIQEGSLGLIRAAEKFDHEKGYKFST 196
[40][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 121 bits (304), Expect = 3e-26
Identities = 59/142 (41%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Frame = +2
Query: 155 KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
++R ++++ HY+ D +R RLL A EE++L+ I DL++LE++++ L E+
Sbjct: 68 RRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRDRLQEQLER 127
Query: 332 QPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQE 511
+P + +WA + R RL+ G K+KM++SN+RLV+S+AK Y G+S QDL+QE
Sbjct: 128 EPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 187
Query: 512 GCRGLVRGAEKYDASKGFKFST 577
G GL+R AEK+D KG+KFST
Sbjct: 188 GSLGLIRAAEKFDHEKGYKFST 209
[41][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 121 bits (303), Expect = 4e-26
Identities = 72/191 (37%), Positives = 106/191 (55%), Gaps = 1/191 (0%)
Frame = +2
Query: 8 EELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY 187
EE DAQ SD D +SG+ + + R + G+KK HY
Sbjct: 42 EEYIDAQ---SDEDDLKSGKVAKSRTR------------------TAGKKK-------HY 73
Query: 188 S-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMA 364
+ D +R RLL A EE++L+ I DL++LE+++E+L +P ++WA
Sbjct: 74 TEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAV 133
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
++ ++RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK
Sbjct: 134 DMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 193
Query: 545 YDASKGFKFST 577
+D KG+KFST
Sbjct: 194 FDHEKGYKFST 204
[42][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 120 bits (302), Expect = 6e-26
Identities = 60/142 (42%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Frame = +2
Query: 155 KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
++R ++++ HY+ D +R RLL A EE++L+ I DL++LE+++E L+E+
Sbjct: 66 RRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEQLDR 125
Query: 332 QPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQE 511
P ++WA + R RL+ G K+KM++SN+RLV+S+AK Y G+S QDL+QE
Sbjct: 126 DPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 185
Query: 512 GCRGLVRGAEKYDASKGFKFST 577
G GL+R AEK+D KG+KFST
Sbjct: 186 GSLGLIRAAEKFDHEKGYKFST 207
[43][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 120 bits (301), Expect = 8e-26
Identities = 72/189 (38%), Positives = 105/189 (55%), Gaps = 1/189 (0%)
Frame = +2
Query: 14 LEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYS- 190
+EDA S+ A G +T KAR R G++ KK+ HY+
Sbjct: 22 VEDAASSTSEDNQAGEGGKTT-KARTARRRGQS--------------KKK------HYTE 60
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +R RLL A EE++L+ I DL++LE++ +DL ++ +P +WA +
Sbjct: 61 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDM 120
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
R RL+ G K+KM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D
Sbjct: 121 PLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 180
Query: 551 ASKGFKFST 577
KG+KFST
Sbjct: 181 HEKGYKFST 189
[44][TOP]
>UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84LK8_ORYSJ
Length = 572
Score = 119 bits (299), Expect = 1e-25
Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRT--Q 175
++EEL+ + F RS R ER+++R R A +A+ VS ++ +K++ + +
Sbjct: 200 SNEELQSKGQVF-----VRSTRLLERRSKR-RYAPRASIADVSCSADNSKKKEKSKKYGR 253
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWA 355
+ +P + T LTA EE L IQ L+K+E+ L + G +PT A+WA
Sbjct: 254 VLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWA 313
Query: 356 TMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRG 535
G+ K L+ + G C+EKM +SN RLVI VA+ Y+G G+ +QDLVQ+GC GL++
Sbjct: 314 EAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKT 373
Query: 536 AEKYDASKGFKFST 577
EK++ SKG +F T
Sbjct: 374 FEKFNPSKGCRFPT 387
[45][TOP]
>UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FJ30_MAIZE
Length = 541
Score = 119 bits (298), Expect = 2e-25
Identities = 66/179 (36%), Positives = 102/179 (56%)
Frame = +2
Query: 41 DSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTT 220
D + RS R ER++++ +A N V+ G ++K + + +P R
Sbjct: 178 DQVFIRSTRLLERRSKKRNGGHRALDNGVACS-GVNSKRKDKFGRVLDPDEPFRLFLRDR 236
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
T LTA EE ++ IQ+L+KLE Q +L + G +PT +WA G+ + L+ +
Sbjct: 237 ETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVR 296
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G C+EKM +SN RLVI VA+ Y+G G+ +QDLVQ+GC GL++ EK++ SKG +F T
Sbjct: 297 TGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPT 355
[46][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 119 bits (297), Expect = 2e-25
Identities = 59/142 (41%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
Frame = +2
Query: 155 KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
++R + ++ HY+ D +R RLL A EE++L+ I DL++LE++++ L ++
Sbjct: 57 RRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQLER 116
Query: 332 QPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQE 511
+P +WA ++ R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QE
Sbjct: 117 EPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 176
Query: 512 GCRGLVRGAEKYDASKGFKFST 577
G GL+R AEK+D KG+KFST
Sbjct: 177 GSLGLIRAAEKFDHEKGYKFST 198
[47][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 118 bits (296), Expect = 3e-25
Identities = 58/145 (40%), Positives = 89/145 (61%)
Frame = +2
Query: 143 STGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEK 322
S R++ ++ + D +R RLL A EE++L+ I DL++LE+++E + E
Sbjct: 53 SASRRRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEH 112
Query: 323 FGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDL 502
G PT +W+ ++ ++RL G K+KM+ SN+RLV+S+AK Y G+S QDL
Sbjct: 113 MGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDL 172
Query: 503 VQEGCRGLVRGAEKYDASKGFKFST 577
+QEG GL+R AEK+D KG+KFST
Sbjct: 173 IQEGSLGLIRAAEKFDHEKGYKFST 197
[48][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 118 bits (295), Expect = 4e-25
Identities = 58/141 (41%), Positives = 88/141 (62%)
Frame = +2
Query: 155 KKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ 334
K + + ++ + D +R RLL A EE++L+ I DL+ LE+++++L E+
Sbjct: 77 KAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRL 136
Query: 335 PTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEG 514
P+ A+WA R+RL G K+KM++SN+RLV+S+AK Y G+S QDL+QEG
Sbjct: 137 PSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 196
Query: 515 CRGLVRGAEKYDASKGFKFST 577
GL+R AEK+D KG+KFST
Sbjct: 197 SLGLIRAAEKFDHEKGYKFST 217
[49][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 117 bits (293), Expect = 6e-25
Identities = 58/141 (41%), Positives = 87/141 (61%)
Frame = +2
Query: 155 KKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ 334
K + + + + D +R RLL A EE++L+ I DL+ LE+++++L E+
Sbjct: 77 KAKAKVPKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRL 136
Query: 335 PTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEG 514
P+ A+WA R+RL G K+KM++SN+RLV+S+AK Y G+S QDL+QEG
Sbjct: 137 PSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 196
Query: 515 CRGLVRGAEKYDASKGFKFST 577
GL+R AEK+D KG+KFST
Sbjct: 197 SLGLIRAAEKFDHEKGYKFST 217
[50][TOP]
>UniRef100_B1XQ38 Sigma factor n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQ38_SYNP2
Length = 318
Score = 116 bits (290), Expect = 1e-24
Identities = 58/130 (44%), Positives = 85/130 (65%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DP+R+ LLT EEV S +Q ++ LEKL+ +LAEK +P+ +WA A
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ Q+ L+K+L G K+KM+++N+RLV+SVAK Y M L DL+QEG G+ RG EK+
Sbjct: 68 LSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 128 DPTKGYRFST 137
[51][TOP]
>UniRef100_P96034 Sigma factor n=1 Tax=Synechococcus sp. RepID=P96034_SYNSP
Length = 317
Score = 116 bits (290), Expect = 1e-24
Identities = 58/130 (44%), Positives = 85/130 (65%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DP+R+ LLT EEV S +Q ++ LEKL+ +LAEK +P+ +WA A
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ Q+ L+K+L G K+KM+++N+RLV+SVAK Y M L DL+QEG G+ RG EK+
Sbjct: 68 LSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 128 DPTKGYRFST 137
[52][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 116 bits (290), Expect = 1e-24
Identities = 59/131 (45%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG-QPTFAQWATMA 364
+D +++ LLT +EEV+L++ IQDL+ L + E L E+ GG +PT WA
Sbjct: 269 TDSMKTYLKDIGTVSLLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIEC 328
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
+ ++ L +RL G K MI++N+RLV+S+AK Y MS QDL+QEGC GL+RGAEK
Sbjct: 329 NITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEK 388
Query: 545 YDASKGFKFST 577
+D +G+KFST
Sbjct: 389 FDFKRGYKFST 399
[53][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 115 bits (289), Expect = 2e-24
Identities = 66/177 (37%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKA---ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRA 226
++ +TE +A +A A + + K G G V+ D +R
Sbjct: 112 KASAETESSQAAAKATSEADAKARALANIKIGPKG---------VYTEDSIRVYLQEIGR 162
Query: 227 TRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYG 406
RLL EE++L+ I DL+ LE+L E G P +WA++ + R+RL G
Sbjct: 163 IRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFRRRLMLG 222
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 223 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 279
[54][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 115 bits (289), Expect = 2e-24
Identities = 66/158 (41%), Positives = 89/158 (56%)
Frame = +2
Query: 104 GKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDL 283
GKAA + S K G G V+ D +R RLL EE++L+ I DL
Sbjct: 72 GKAA-KLPSIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADL 121
Query: 284 IKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVA 463
+ LE+L + E G P +WA + + R+RL G KEKM++SN+RLV+S+A
Sbjct: 122 LHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLVVSIA 181
Query: 464 KNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 182 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 219
[55][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 115 bits (289), Expect = 2e-24
Identities = 66/177 (37%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKA---ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRA 226
++ +TE +A+ +A A + + K G G V+ D +R
Sbjct: 95 KASAETESSQAAAKASSEADAKARALANIKIGPKG---------VYTEDSIRVYLQEIGR 145
Query: 227 TRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYG 406
RLL EE++L+ I DL+ LE+L E G P +WA + + R+RL G
Sbjct: 146 IRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFRRRLMLG 205
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 206 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 262
[56][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 115 bits (289), Expect = 2e-24
Identities = 69/188 (36%), Positives = 99/188 (52%)
Frame = +2
Query: 14 LEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSD 193
L +A + +D+ + + T K + +A KA + S K G G V+ D
Sbjct: 88 LANASGKAADTPQSAADAGTSTKEEKAKADAKAKV-LASIKVGPKG---------VYTED 137
Query: 194 PLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD 373
+R RLL EE++L+ I DL+ LE+L G P +WA + +
Sbjct: 138 SIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMP 197
Query: 374 QKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDA 553
R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D
Sbjct: 198 VIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 257
Query: 554 SKGFKFST 577
KG+KFST
Sbjct: 258 EKGYKFST 265
[57][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 115 bits (289), Expect = 2e-24
Identities = 68/169 (40%), Positives = 103/169 (60%), Gaps = 9/169 (5%)
Frame = +2
Query: 98 AAGKAAT--NVVSFKFGSTGRK--KRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLS 265
A GK+AT + + + G+ RK KR + +D +++ + LLT +EV+L+
Sbjct: 219 ADGKSATISSSATTRAGNVVRKTTKRDPSTSRRQTDSMKTYLKDIGSVSLLTGEQEVELA 278
Query: 266 EGIQDLIKLEKLQEDLAE-----KFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
IQDL+ LE ++E L E K + + WA A V ++ L++RL+ G K +MI
Sbjct: 279 MRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMI 338
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
++N+RLV+S+AK Y MS QDL+QEGC GL+RGAEK+D +G+KFST
Sbjct: 339 QANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFST 387
[58][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 115 bits (287), Expect = 3e-24
Identities = 68/175 (38%), Positives = 94/175 (53%), Gaps = 8/175 (4%)
Frame = +2
Query: 77 RKARRVRAAG--------KAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATR 232
+ A+ +AAG KAA + S K G G V+ D +R R
Sbjct: 156 KAAKAPKAAGDQKPAGDEKAAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIR 206
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EE++L+ I DL++LE+L G P +WA + + R+RL G
Sbjct: 207 LLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRR 266
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 267 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 321
[59][TOP]
>UniRef100_B4WG00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WG00_9SYNE
Length = 319
Score = 115 bits (287), Expect = 3e-24
Identities = 52/115 (45%), Positives = 79/115 (68%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLT +E+ L + +Q L+KLE +++DL E +PT A+WA + + L+K + G
Sbjct: 23 LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQ 82
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K+KM++SN+RLV+S+AK Y+GS + + DL+QEG GL RG EK+D KG++FST
Sbjct: 83 AKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFST 137
[60][TOP]
>UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE
Length = 541
Score = 115 bits (287), Expect = 3e-24
Identities = 66/179 (36%), Positives = 101/179 (56%)
Frame = +2
Query: 41 DSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTT 220
D + RS R ER++++ +A N V+ ++ RK + + S R
Sbjct: 178 DQVFIRSTRLLERRSKKRNGGHRALDNGVACSGVNSKRKDKFGRVLIQTS-LFRLFLRDR 236
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
T LTA EE ++ IQ+L+KLE Q +L + G +PT +WA G+ + L+ +
Sbjct: 237 ETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVR 296
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G C+EKM +SN RLVI VA+ Y+G G+ +QDLVQ+GC GL++ EK++ SKG +F T
Sbjct: 297 TGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPT 355
[61][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 114 bits (286), Expect = 4e-24
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +2
Query: 74 ERKARRVRAAGKA-ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASE 250
E KA+ + A A A + S K G G V+ D +R RLL E
Sbjct: 130 EEKAKAIAAEKAAKAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDE 180
Query: 251 EVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
E++L+ I DL+ LE+L G +P +WA + + R+RL G KEKM+
Sbjct: 181 EIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMV 240
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 241 QSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 289
[62][TOP]
>UniRef100_C7QVB1 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QVB1_CYAP0
Length = 318
Score = 114 bits (286), Expect = 4e-24
Identities = 57/129 (44%), Positives = 81/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
DP+R+ LLT EE+ ++ +Q + LE L+E L E+ G +PT AQWA A +
Sbjct: 9 DPVRAYLREIGRVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKM 68
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
QK LR + G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D
Sbjct: 69 TQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 551 ASKGFKFST 577
+KG++FST
Sbjct: 129 PTKGYRFST 137
[63][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 114 bits (286), Expect = 4e-24
Identities = 68/191 (35%), Positives = 98/191 (51%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVH 184
S +L A +Q ++ D ++T A+ + S K G G V+
Sbjct: 116 STDLSAAADQLLEAADGAKDKKTAANAKAL----------ASIKVGPKG---------VY 156
Query: 185 YSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMA 364
D +R RLL EE++L+ I DL+ LE+L + G P +WA +
Sbjct: 157 TEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLV 216
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
+ R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK
Sbjct: 217 DMPPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 276
Query: 545 YDASKGFKFST 577
+D KG+KFST
Sbjct: 277 FDHEKGYKFST 287
[64][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 114 bits (285), Expect = 5e-24
Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 2/194 (1%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSID--ARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQ 175
T+ L+ + +Q + + A + + TE + +A KA + S K G G
Sbjct: 75 TAANLDASADQLLAAAETTATAVKATETSVAKAKADAKAKV-LASIKVGPKG-------- 125
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWA 355
V+ D +R RLL EE++L+ I DL+ LE+L G P +WA
Sbjct: 126 -VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWA 184
Query: 356 TMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRG 535
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R
Sbjct: 185 ALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 244
Query: 536 AEKYDASKGFKFST 577
AEK+D KG+KFST
Sbjct: 245 AEKFDHEKGYKFST 258
[65][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 114 bits (284), Expect = 7e-24
Identities = 67/176 (38%), Positives = 92/176 (52%)
Frame = +2
Query: 50 DARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRAT 229
D+ G T+ +AR A S K G G V+ D +R
Sbjct: 98 DSLIGDLTDAEAREKALA--------SIKLGPKG---------VYTEDSIRVYLQEIGRI 140
Query: 230 RLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGV 409
RLL EE++L+ I DL+ LE+L + G PT +WA + + R+RL
Sbjct: 141 RLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFRRRLMLAR 200
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 201 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 256
[66][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 114 bits (284), Expect = 7e-24
Identities = 63/156 (40%), Positives = 88/156 (56%)
Frame = +2
Query: 110 AATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIK 289
AA + S K G G V+ D +R RLL EE++L+ I DL++
Sbjct: 90 AAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQ 140
Query: 290 LEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKN 469
LE+ + G P+ +WA +A + R+RL G KEKM++SN+RLV+S+AK
Sbjct: 141 LEEEAAQFESENGHFPSVKEWAVLADMPLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKK 200
Query: 470 YQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 201 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 236
[67][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 114 bits (284), Expect = 7e-24
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +2
Query: 74 ERKARRVRAAGKA-ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASE 250
E KA+ A +A A + S K G G V+ D +R RLL E
Sbjct: 110 EEKAKAASAEKEAKAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDE 160
Query: 251 EVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
E++L+ I DL+ LE+L G +P +WA + + R+RL G KEKM+
Sbjct: 161 EIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMV 220
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 221 QSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 269
[68][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 114 bits (284), Expect = 7e-24
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +2
Query: 74 ERKARRVRAAGKA-ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASE 250
E KA+ A +A A + S K G G V+ D +R RLL E
Sbjct: 94 EEKAKTAAAEKEAKAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDE 144
Query: 251 EVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
E++L+ I DL+ LE+L G +P +WA + + R+RL G KEKM+
Sbjct: 145 EIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGRRAKEKMV 204
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 205 QSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 253
[69][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 114 bits (284), Expect = 7e-24
Identities = 63/156 (40%), Positives = 88/156 (56%)
Frame = +2
Query: 110 AATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIK 289
AA + S K G G V+ D +R RLL EE++L+ I DL++
Sbjct: 90 AAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQ 140
Query: 290 LEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKN 469
LE+ + G P+ +WA +A + R+RL G KEKM++SN+RLV+S+AK
Sbjct: 141 LEEEAAQFESENGHFPSVKEWAVLADMPLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKK 200
Query: 470 YQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 201 YMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 236
[70][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 114 bits (284), Expect = 7e-24
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +2
Query: 74 ERKARRVRAAGKA-ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASE 250
E KA+ A +A A + S K G G V+ D +R RLL E
Sbjct: 110 EEKAKAATAEKEAKAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDE 160
Query: 251 EVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
E++L+ I DL+ LE+L G +P +WA + + R+RL G KEKM+
Sbjct: 161 EIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMV 220
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 221 QSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 269
[71][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 114 bits (284), Expect = 7e-24
Identities = 67/169 (39%), Positives = 92/169 (54%), Gaps = 1/169 (0%)
Frame = +2
Query: 74 ERKARRVRAAGKA-ATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASE 250
E KA+ A +A A + S K G G V+ D +R RLL E
Sbjct: 117 EEKAKTAAAEKEAKAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDE 167
Query: 251 EVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
E++L+ I DL+ LE+L G +P +WA + + R+RL G KEKM+
Sbjct: 168 EIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGRRAKEKMV 227
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 228 QSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 276
[72][TOP]
>UniRef100_A3YWT8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YWT8_9SYNE
Length = 349
Score = 114 bits (284), Expect = 7e-24
Identities = 60/139 (43%), Positives = 90/139 (64%), Gaps = 1/139 (0%)
Frame = +2
Query: 164 VRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ-PT 340
VRT D +RS LLT +E+ L +Q+L++LE+ +++L + GGQ P+
Sbjct: 27 VRTLPPVDGDLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPS 86
Query: 341 FAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCR 520
A+WA+ AG+ L+++L+ G KE+M+ +N+RLV+SVAK Y M L DL+QEG
Sbjct: 87 AAEWASAAGLSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTI 146
Query: 521 GLVRGAEKYDASKGFKFST 577
GLVRG EK+D ++G+KFST
Sbjct: 147 GLVRGVEKFDPTRGYKFST 165
[73][TOP]
>UniRef100_B0JTP4 Group 2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
NIES-843 RepID=B0JTP4_MICAN
Length = 318
Score = 113 bits (283), Expect = 9e-24
Identities = 56/130 (43%), Positives = 83/130 (63%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DP+R+ LLT EE+ ++ +Q LI LEK++E L K G P+ QW+ A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAE 67
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ ++ LR+ L G F K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 128 DPTKGYRFST 137
[74][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 113 bits (283), Expect = 9e-24
Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Frame = +2
Query: 71 TERKARRVRAAGKAATNVVSFKFGSTGRKKR-----------VRTQEVHYSDPLRSLRST 217
T++ + + AA AA N + K +T ++ V + V+ D +R
Sbjct: 95 TKKASTKDAAAKDAAANAATAKPETTAAAEKDAKAKALASIKVGPKGVYTEDSIRVYLQE 154
Query: 218 TRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRL 397
RLL EE++L+ I DL+ LE+L G +P +WA + + R+RL
Sbjct: 155 IGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPVIKFRRRL 214
Query: 398 NYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 215 MLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 274
[75][TOP]
>UniRef100_A3ITT4 RNA polymerase sigma factor SigD n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ITT4_9CHRO
Length = 318
Score = 113 bits (282), Expect = 1e-23
Identities = 55/129 (42%), Positives = 83/129 (64%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
DP+R+ LLT EE+ ++ +Q L+ LEKL++D+ E+ G +PT QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+K L+ + G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 551 ASKGFKFST 577
+KG++FST
Sbjct: 129 PTKGYRFST 137
[76][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 112 bits (281), Expect = 2e-23
Identities = 70/199 (35%), Positives = 98/199 (49%), Gaps = 8/199 (4%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKA--------ATNVVSFKFGSTGRKK 160
S +L+ A +Q +S + A +A K A + S K G G
Sbjct: 79 SSDLDAAADQLLAKAAGKSAETPTKAAANAASASKEEKAKADAKAKVLASIKVGPKG--- 135
Query: 161 RVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPT 340
V+ D +R RLL EE++L+ I DL+ LE+L G P
Sbjct: 136 ------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPD 189
Query: 341 FAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCR 520
+WA + + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG
Sbjct: 190 TKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 249
Query: 521 GLVRGAEKYDASKGFKFST 577
GL+R AEK+D KG+KFST
Sbjct: 250 GLIRAAEKFDHEKGYKFST 268
[77][TOP]
>UniRef100_A3Z1L6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3Z1L6_9SYNE
Length = 330
Score = 112 bits (281), Expect = 2e-23
Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ-PTFAQWATMAG 367
D +RS LLT +E+ L +Q+L++LE+ +++L + GGQ P+ A+WA+ AG
Sbjct: 20 DLVRSYLRDIGRVPLLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAG 79
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+++L+ G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 80 LSPALLKRKLSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 139
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 140 DPTRGYKFST 149
[78][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 112 bits (280), Expect = 2e-23
Identities = 64/151 (42%), Positives = 91/151 (60%), Gaps = 8/151 (5%)
Frame = +2
Query: 149 GRKKRVRTQ--EVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAE 319
GR R RTQ + HY+ D +R RLL A EE++L+ I DL+++E++++ L +
Sbjct: 86 GRASRRRTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLCQ 145
Query: 320 KFGGQPTFAQ-----WATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSG 484
+ G + WA G+ R RL G KEKM++SN+RLV+S+AK Y G
Sbjct: 146 ELGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNRG 205
Query: 485 MSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 206 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 236
[79][TOP]
>UniRef100_A8YAB5 Genome sequencing data, contig C249 n=1 Tax=Microcystis aeruginosa
PCC 7806 RepID=A8YAB5_MICAE
Length = 318
Score = 112 bits (280), Expect = 2e-23
Identities = 55/130 (42%), Positives = 83/130 (63%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DP+R+ LL+ EE+ ++ +Q LI LEK++E L K G P+ QW+ A
Sbjct: 8 TDPVRAYLREIGRVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAE 67
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ ++ LR+ L G F K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+
Sbjct: 68 ISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 128 DPTKGYRFST 137
[80][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
Length = 487
Score = 112 bits (280), Expect = 2e-23
Identities = 63/174 (36%), Positives = 96/174 (55%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRL 235
RS RQ ER+A+ RA + + T KK+ + Q D L+ +L
Sbjct: 129 RSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQL 187
Query: 236 LTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFC 415
LTA EE +L IQ L+KLEK++ L + G +PT +WA G+ L+ ++ G
Sbjct: 188 LTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSS 247
Query: 416 KEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+EK+I +N+RLV+ +AK YQ G++ QDL+QEG GL++ EK+ G +F+T
Sbjct: 248 REKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFAT 301
[81][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LD95_ARATH
Length = 547
Score = 112 bits (280), Expect = 2e-23
Identities = 63/174 (36%), Positives = 96/174 (55%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRL 235
RS RQ ER+A+ RA + + T KK+ + Q D L+ +L
Sbjct: 189 RSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQL 247
Query: 236 LTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFC 415
LTA EE +L IQ L+KLEK++ L + G +PT +WA G+ L+ ++ G
Sbjct: 248 LTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSS 307
Query: 416 KEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+EK+I +N+RLV+ +AK YQ G++ QDL+QEG GL++ EK+ G +F+T
Sbjct: 308 REKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFAT 361
[82][TOP]
>UniRef100_B9HE05 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HE05_POPTR
Length = 559
Score = 112 bits (280), Expect = 2e-23
Identities = 59/175 (33%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLR-STTRATR 232
R+G++ ERK RR RAA S S +T + + P R S++ + R
Sbjct: 208 RTGKKEERKFRRERAASDNGKKTTSLSLPS-------KTVQNNLPKPTFVKRTSSSSSRR 260
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
L A E K++ G++ LE+++ L E+ G + + WA G+D+K L+++L +G +
Sbjct: 261 SLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFGWY 320
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
C++++IK+ LV+ +A+NY+G G++++DL+Q G GL++GAE++D ++G++FST
Sbjct: 321 CRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFST 375
[83][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 112 bits (279), Expect = 3e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 82 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 141
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 142 LTDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 201
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 202 EKFDHEKGYKFST 214
[84][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 112 bits (279), Expect = 3e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 83 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAE 142
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 143 LIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 202
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 203 EKFDHEKGYKFST 215
[85][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 112 bits (279), Expect = 3e-23
Identities = 69/192 (35%), Positives = 98/192 (51%), Gaps = 1/192 (0%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKA-ATNVVSFKFGSTGRKKRVRTQEV 181
S+ A+ +D+ A + K A +A A + S K G G V
Sbjct: 115 SKTAAKAEAAPADTAKAAVAKPAANKPASAAAEKEARAKALASIKVGPKG---------V 165
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
+ D +R RLL EE++L+ I DL+ LE+L G +P +WA +
Sbjct: 166 YTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAAL 225
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
+ R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AE
Sbjct: 226 VEMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 285
Query: 542 KYDASKGFKFST 577
K+D KG+KFST
Sbjct: 286 KFDHEKGYKFST 297
[86][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 112 bits (279), Expect = 3e-23
Identities = 70/191 (36%), Positives = 98/191 (51%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVH 184
S+ LE ++ S I S ++E K V A + S K G G V+
Sbjct: 100 SKNLEKEDKELSTPI---SETKSESKITDVDDKDAKAKALASIKIGPKG---------VY 147
Query: 185 YSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMA 364
D +R RLL EE++L+ I DL+ LE+L + G P +WA +
Sbjct: 148 TEDSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALV 207
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
+ R+RL G K KM++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK
Sbjct: 208 EMSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 267
Query: 545 YDASKGFKFST 577
+D KG+KFST
Sbjct: 268 FDHEKGYKFST 278
[87][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 111 bits (278), Expect = 4e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 79 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 138
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 139 LIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 198
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 199 EKFDHEKGYKFST 211
[88][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 111 bits (278), Expect = 4e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 79 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 138
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 139 LIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 198
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 199 EKFDHEKGYKFST 211
[89][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 111 bits (278), Expect = 4e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 79 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 138
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 139 LIDMPLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 198
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 199 EKFDHEKGYKFST 211
[90][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 111 bits (278), Expect = 4e-23
Identities = 61/174 (35%), Positives = 97/174 (55%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRL 235
RS R+ ER+++ R + G +K++ + DPLR +L
Sbjct: 190 RSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKKIN-EGFDPKDPLRLFLWGPETKQL 248
Query: 236 LTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFC 415
LTA EE +L +QDL+ LE ++E +FG PT +WA G+ ++ +L+ G
Sbjct: 249 LTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRS 308
Query: 416 KEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+EK+I +N+R+V+ +AK YQG G+SLQDL+QEG GL++ EK+ G +F+T
Sbjct: 309 REKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFAT 362
[91][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 111 bits (277), Expect = 5e-23
Identities = 64/171 (37%), Positives = 92/171 (53%), Gaps = 30/171 (17%)
Frame = +2
Query: 155 KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQ--------- 304
++R R Q HY+ D +R RLL A EE++L+ I DL+ LE+L+
Sbjct: 48 RRRSRAQRAHYTEDSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRARMGAAGTD 107
Query: 305 --EDLAEKFG------------------GQPTFAQWATMAGVDQKTLRKRLNYGVFCKEK 424
D+A+ G + +WA AG+ + R R+ YG K+K
Sbjct: 108 MHSDVADLLGDDDLLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDK 167
Query: 425 MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
M++SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 168 MVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 218
[92][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 111 bits (277), Expect = 5e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 80 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 139
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 140 LIDMPLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 199
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 200 EKFDHEKGYKFST 212
[93][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 111 bits (277), Expect = 5e-23
Identities = 56/133 (42%), Positives = 81/133 (60%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ D +R RLL EE++L+ I DL++LE+L + G P+ +WA
Sbjct: 80 IYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAE 139
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R A
Sbjct: 140 LIDMPLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 199
Query: 539 EKYDASKGFKFST 577
EK+D KG+KFST
Sbjct: 200 EKFDHEKGYKFST 212
[94][TOP]
>UniRef100_Q7V9N8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7V9N8_PROMA
Length = 328
Score = 110 bits (276), Expect = 6e-23
Identities = 59/129 (45%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LLT +E+ L +Q+LI LEKL+ +L G +P+ A AG+
Sbjct: 19 DLVRSYLRDIGRVPLLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGI 78
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ L KRL GV KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 79 SVRELSKRLKRGVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 138
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 139 PARGYKFST 147
[95][TOP]
>UniRef100_B1X0Q3 Group 2 sigma-70 RNA polymerase sigma factor D n=1 Tax=Cyanothece
sp. ATCC 51142 RepID=B1X0Q3_CYAA5
Length = 318
Score = 110 bits (276), Expect = 6e-23
Identities = 54/129 (41%), Positives = 83/129 (64%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
DP+R+ LLT EE+ ++ +Q L+ LEKL+E++ E+ G +PT +QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++ R + G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 551 ASKGFKFST 577
+KG++FST
Sbjct: 129 PTKGYRFST 137
[96][TOP]
>UniRef100_B0C890 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C890_ACAM1
Length = 318
Score = 110 bits (275), Expect = 8e-23
Identities = 58/138 (42%), Positives = 88/138 (63%)
Frame = +2
Query: 164 VRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTF 343
+RT+E+ D +RS LLT EEV + +Q LIKL+ ++++LAE+ QP
Sbjct: 1 MRTKEIA-KDSVRSYLREIGRVPLLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPND 59
Query: 344 AQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRG 523
A+W+ A + + L+K L+ G K KM+++N+RLV+SVAK Y + L DL+QEG G
Sbjct: 60 AEWSAAAKLSEAELQKALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIG 119
Query: 524 LVRGAEKYDASKGFKFST 577
+ RG EK+D +KG++FST
Sbjct: 120 MQRGVEKFDPTKGYRFST 137
[97][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 110 bits (275), Expect = 8e-23
Identities = 56/139 (40%), Positives = 83/139 (59%)
Frame = +2
Query: 161 RVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPT 340
++ + V+ D +R RLL EE++L+ I DL+ LE++ + G P+
Sbjct: 105 KIGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPS 164
Query: 341 FAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCR 520
+WA + + R+RL G KEKM++SN+RLV+S+AK Y G+S QDL+QEG
Sbjct: 165 KKEWAALVEMPVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 224
Query: 521 GLVRGAEKYDASKGFKFST 577
GL+R AEK+D KG+KFST
Sbjct: 225 GLIRAAEKFDHEKGYKFST 243
[98][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 109 bits (273), Expect = 1e-22
Identities = 61/153 (39%), Positives = 90/153 (58%), Gaps = 7/153 (4%)
Frame = +2
Query: 140 GSTGRKKR--VRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDL 313
G+ GR KR ++ + D +R RLL A EE++L+ I DL++LE+ +E +
Sbjct: 69 GAKGRSKRKAASKKKPYTDDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAV 128
Query: 314 AEKFG-----GQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQG 478
++ G + WA + R+RL+ G KEKM++SN+RLV+S+AK Y
Sbjct: 129 FQRMGLWSDPEEVPDTLWAEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMN 188
Query: 479 SGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 189 RGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 221
[99][TOP]
>UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BR19_ORYSJ
Length = 497
Score = 109 bits (273), Expect = 1e-22
Identities = 71/210 (33%), Positives = 111/210 (52%), Gaps = 18/210 (8%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRT--Q 175
++EEL+ + F RS R ER+++R R A +A+ VS ++ +K++ + +
Sbjct: 109 SNEELQSKGQVF-----VRSTRLLERRSKR-RYAPRASIADVSCSADNSKKKEKSKKYGR 162
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQD----------------LIKLEKLQE 307
+ +P + T LTA EE L IQ L+K+E+
Sbjct: 163 VLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHR 222
Query: 308 DLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGM 487
L + G +PT A+WA G+ K L+ + G C+EKM +SN RLVI VA+ Y+G G+
Sbjct: 223 KLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGL 282
Query: 488 SLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+QDLVQ+GC GL++ EK++ SKG +F T
Sbjct: 283 DIQDLVQDGCSGLMKTFEKFNPSKGCRFPT 312
[100][TOP]
>UniRef100_A3IZB7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IZB7_9CHRO
Length = 328
Score = 108 bits (271), Expect = 2e-22
Identities = 52/135 (38%), Positives = 85/135 (62%)
Frame = +2
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
Q ++ +D +R+ LLT +E+ + +Q ++ L + +E+LA++ G +P+ +W
Sbjct: 12 QPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEW 71
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A +++K L+K L G K KMI++N+RLV+++AK YQ M DL+QEG GL R
Sbjct: 72 AKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 533 GAEKYDASKGFKFST 577
G EK+D +KG+KFST
Sbjct: 132 GVEKFDPTKGYKFST 146
[101][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 108 bits (270), Expect = 3e-22
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 5/194 (2%)
Frame = +2
Query: 11 ELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYS 190
EL+ + D D E A AA K + ++K ++ +
Sbjct: 40 ELDASDTDAFDEDDEDDEESLEEDADAAAAAAKGRS-----------KRKAASKKKPYTD 88
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFG-----GQPTFAQWA 355
D +R RLL A EE++L+ I DL++LE+ +E + ++ G + WA
Sbjct: 89 DSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWA 148
Query: 356 TMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRG 535
+ R+RL+ G KEKM++SN+RLV+S+AK Y G+S QDL+QEG GL+R
Sbjct: 149 EEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 208
Query: 536 AEKYDASKGFKFST 577
AEK+D KG+KFST
Sbjct: 209 AEKFDHEKGYKFST 222
[102][TOP]
>UniRef100_Q39515 Chloroplast RNA polymerase sigma subunit n=1 Tax=Cyanidium
caldarium RepID=Q39515_CYACA
Length = 591
Score = 108 bits (270), Expect = 3e-22
Identities = 56/131 (42%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS +LL EE++LS+ + L+ LE+ Q E+ G PT ++WA G
Sbjct: 276 DTIRSYLREIGRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGY 335
Query: 371 --DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
D + LR+ + G KE+M+ +N+RLV+S+AK Y G++LQDL+QEG GL+RG EK
Sbjct: 336 GDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEK 395
Query: 545 YDASKGFKFST 577
+DA +GF+FST
Sbjct: 396 FDAERGFRFST 406
[103][TOP]
>UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8BC85_ORYSI
Length = 537
Score = 108 bits (270), Expect = 3e-22
Identities = 68/200 (34%), Positives = 105/200 (52%), Gaps = 18/200 (9%)
Frame = +2
Query: 32 QFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRT--QEVHYSDPLRS 205
Q + RS R ER+++R R A +A+ VS ++ +K++ + + + +P +
Sbjct: 154 QSKGQVFVRSTRLLERRSKR-RYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKL 212
Query: 206 LRSTTRATRLLTASEEVKLSEGIQD----------------LIKLEKLQEDLAEKFGGQP 337
T LTA EE L IQ L+K+E+ L + G +P
Sbjct: 213 FLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGREP 272
Query: 338 TFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGC 517
T A+WA G+ K L+ + G C+EKM +SN RLVI VA+ Y+G G+ +QDLVQ+GC
Sbjct: 273 TLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGC 332
Query: 518 RGLVRGAEKYDASKGFKFST 577
GL++ EK++ SKG +F T
Sbjct: 333 SGLMKTFEKFNPSKGCRFPT 352
[104][TOP]
>UniRef100_B9RRX0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9RRX0_RICCO
Length = 560
Score = 108 bits (269), Expect = 4e-22
Identities = 59/173 (34%), Positives = 110/173 (63%)
Frame = +2
Query: 59 SGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLL 238
+ ++ ERK+RR RA+ + S S R + +++ S ++ +S +R RL+
Sbjct: 208 TAKKEERKSRRERASARKGHKSPSLPLPS--RPIQSGSEKPTVSSGKKASKSKSR--RLI 263
Query: 239 TASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCK 418
A E +++ GI+ L LEK++ L E+ + + WA AG+D K L+++L++G +C+
Sbjct: 264 IARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVLQQQLSFGWYCR 323
Query: 419 EKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+++IKS LV+ A+NY+G+G++L+DL+Q G G++ GAE++D ++G++FST
Sbjct: 324 DELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGYRFST 376
[105][TOP]
>UniRef100_B5INB3 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5INB3_9CHRO
Length = 335
Score = 107 bits (267), Expect = 7e-22
Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ-PTFAQWATMAG 367
D +RS LLT +E+ L +Q+L+ LE+++++L + GG P+ A+ A AG
Sbjct: 20 DLVRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAG 79
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 80 LSPAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 139
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 140 DPTRGYKFST 149
[106][TOP]
>UniRef100_B5IJI5 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5IJI5_9CHRO
Length = 319
Score = 107 bits (267), Expect = 7e-22
Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ-PTFAQWATMAG 367
D +RS LLT +E+ L +Q+L+ LE+++++L + GG P+ A+ A AG
Sbjct: 4 DLVRSYLRDIGRVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAG 63
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 64 LSPAVLKKRLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 123
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 124 DPTRGYKFST 133
[107][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 107 bits (267), Expect = 7e-22
Identities = 63/174 (36%), Positives = 97/174 (55%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRL 235
RS R R++ RA ++ S +KR+ +Q +DPLR +L
Sbjct: 177 RSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRL-SQGFDPNDPLRLFLWGPETKQL 235
Query: 236 LTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFC 415
LTA EE +L IQDL+ LE ++ L +FG +PT +WA G+ L+ +L+ G
Sbjct: 236 LTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRS 295
Query: 416 KEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+EK+I +N+R+V+ +AK YQ G+ LQDL+QEG GL++ EK+ G +F+T
Sbjct: 296 REKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFAT 349
[108][TOP]
>UniRef100_B1WQ73 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ73_CYAA5
Length = 328
Score = 107 bits (266), Expect = 9e-22
Identities = 52/135 (38%), Positives = 82/135 (60%)
Frame = +2
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
Q + +D +R+ LLT +E+ + +Q ++ L + +E+LA+ G +P+ +W
Sbjct: 12 QPTYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEW 71
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A +++K L K L G K KMI++N+RLV+++AK YQ M DL+QEG GL R
Sbjct: 72 AKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 533 GAEKYDASKGFKFST 577
G EK+D +KG+KFST
Sbjct: 132 GVEKFDPTKGYKFST 146
[109][TOP]
>UniRef100_Q4BYC5 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BYC5_CROWT
Length = 328
Score = 107 bits (266), Expect = 9e-22
Identities = 52/135 (38%), Positives = 83/135 (61%)
Frame = +2
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
Q ++ +D +R+ LLT +E+ + +Q ++ + +E+LA+K G +PT +W
Sbjct: 12 QPMYSADMVRTYLHEIGRVPLLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEW 71
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
+ ++QK L + L G K KMI++N+RLV+++AK YQ M DL+QEG GL R
Sbjct: 72 SKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 533 GAEKYDASKGFKFST 577
G EK+D +KG+KFST
Sbjct: 132 GVEKFDPTKGYKFST 146
[110][TOP]
>UniRef100_Q3ANG0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ANG0_SYNSC
Length = 335
Score = 106 bits (265), Expect = 1e-21
Identities = 55/129 (42%), Positives = 81/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LLT +E+ L +Q+L+ LE L+ +L K G +P+ Q A +G+
Sbjct: 26 DLVRSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGL 85
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+++L +G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 86 SSIQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 145
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 146 PTRGYKFST 154
[111][TOP]
>UniRef100_Q4C529 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C529_CROWT
Length = 318
Score = 106 bits (265), Expect = 1e-21
Identities = 53/129 (41%), Positives = 82/129 (63%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
DP+R+ LL+ EE+ ++ +Q LI LEKL+E++ ++ G +PT +QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+K + G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 551 ASKGFKFST 577
+KG++FST
Sbjct: 129 PTKGYRFST 137
[112][TOP]
>UniRef100_Q46II1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46II1_PROMT
Length = 335
Score = 105 bits (262), Expect = 3e-21
Identities = 55/129 (42%), Positives = 78/129 (60%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +QDL+ LE L+ +L G +P +A AG+
Sbjct: 26 DLVRSYLRDIGRVPLLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGI 85
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+K+L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 86 SPIQLKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 145
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 146 PTRGYKFST 154
[113][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 105 bits (262), Expect = 3e-21
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +2
Query: 230 RLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV-DQKTLRKRLNYG 406
RLL EE++L+ I L+ E ++ L EK +PT ++W V D K R L+
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRSILHNA 202
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KE+M+ +N+RLV+S+AK Y GMSLQDL+QEG GL+R AEK+D+ KGFKFST
Sbjct: 203 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 259
[114][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 105 bits (261), Expect = 3e-21
Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +2
Query: 230 RLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV-DQKTLRKRLNYG 406
RLL EE++L+ I L+ E ++ L EK +PT ++W V D K R L+
Sbjct: 143 RLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKVSDVKKFRAILHNA 202
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KE+M+ +N+RLV+S+AK Y GMSLQDL+QEG GL+R AEK+D+ KGFKFST
Sbjct: 203 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 259
[115][TOP]
>UniRef100_B7K1W1 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801
RepID=B7K1W1_CYAP8
Length = 375
Score = 104 bits (260), Expect = 4e-21
Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL A EE++L+ +Q L++ E+ ++ L E+ PT AQWA G D Q+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 191
[116][TOP]
>UniRef100_C7QR32 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 8802 RepID=C7QR32_CYAP0
Length = 375
Score = 104 bits (260), Expect = 4e-21
Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL A EE++L+ +Q L++ E+ ++ L E+ PT AQWA G D Q+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 191
[117][TOP]
>UniRef100_Q31ME3 RNA polymerase sigma factor rpoD2 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD2_SYNE7
Length = 320
Score = 104 bits (260), Expect = 4e-21
Identities = 56/137 (40%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Frame = +2
Query: 170 TQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFA 346
T YS D +R+ RLLTA EE+ +Q L+ L Q +L ++ G +P+
Sbjct: 3 TSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKE 62
Query: 347 QWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGL 526
+WA ++ + L +++ G K KMI++N+RLV+S+AK YQ M DL+QEG GL
Sbjct: 63 EWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGL 122
Query: 527 VRGAEKYDASKGFKFST 577
RG EK+D SKG+KFST
Sbjct: 123 ERGVEKFDPSKGYKFST 139
[118][TOP]
>UniRef100_D0CM17 Type II alternative RNA polymerase sigma factor, sigma-70 family
n=1 Tax=Synechococcus sp. WH 8109 RepID=D0CM17_9SYNE
Length = 335
Score = 104 bits (259), Expect = 6e-21
Identities = 54/129 (41%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LLT +E+ L +Q+L+ LE L+ +L K G +P+ A +G+
Sbjct: 26 DLVRSYLRDIGRVPLLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGL 85
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+++L +G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 86 SSMQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 145
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 146 PTRGYKFST 154
[119][TOP]
>UniRef100_Q7UA00 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7UA00_SYNPX
Length = 332
Score = 103 bits (258), Expect = 7e-21
Identities = 53/129 (41%), Positives = 81/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LLT +E+ L +QDL+ +E +Q +L + G +P+ + A +G+
Sbjct: 23 DLVRSYLRDIGRVPLLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGL 82
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+++L +G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 83 TPLQLKRKLQHGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 142
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 143 PTRGYKFST 151
[120][TOP]
>UniRef100_Q5MZI5 Group2 RNA polymerase sigma factor RpoD2 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5MZI5_SYNP6
Length = 320
Score = 103 bits (258), Expect = 7e-21
Identities = 56/137 (40%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Frame = +2
Query: 170 TQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFA 346
T YS D +R+ RLLTA EE+ +Q L+ L Q +L ++ G +P+
Sbjct: 3 TSSAQYSPDLVRAYLQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKE 62
Query: 347 QWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGL 526
+WA ++ + L +++ G K KMI++N+RLV+S+AK YQ M DL+QEG GL
Sbjct: 63 EWAAAVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGL 122
Query: 527 VRGAEKYDASKGFKFST 577
RG EK+D SKG+KFST
Sbjct: 123 ERGFEKFDPSKGYKFST 139
[121][TOP]
>UniRef100_A2C609 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C609_PROM3
Length = 350
Score = 103 bits (258), Expect = 7e-21
Identities = 54/129 (41%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+L+ LE+L+ +L K G + + A AG+
Sbjct: 41 DLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGL 100
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ L+K+L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 101 SELQLKKKLQIGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 160
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 161 PTRGYKFST 169
[122][TOP]
>UniRef100_A2C578 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C578_PROM1
Length = 335
Score = 103 bits (258), Expect = 7e-21
Identities = 55/129 (42%), Positives = 78/129 (60%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +QDL+ LE L+ +L G +P +A AG+
Sbjct: 26 DLVRSYLRDIGRVPLLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGL 85
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+K+L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 86 SPIQLKKKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 145
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 146 PTRGYKFST 154
[123][TOP]
>UniRef100_B4WJR0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WJR0_9SYNE
Length = 390
Score = 103 bits (258), Expect = 7e-21
Identities = 61/177 (34%), Positives = 94/177 (53%), Gaps = 6/177 (3%)
Frame = +2
Query: 65 RQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTA 244
+QT K +R A K T K +T + +T+ V+ +D +RS LL+
Sbjct: 37 KQTATKVKRTTKAKKTTT-----KKAATKKSTSTKTKPVYTTDAVRSYLHEIGRVPLLSH 91
Query: 245 SEEVKLSEGIQDLIKLEKLQEDLAEKFG------GQPTFAQWATMAGVDQKTLRKRLNYG 406
+E+ L + +Q ++ L ++E+LA K + + A WA A + + L + G
Sbjct: 92 EDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESELDHHMRRG 151
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI++N+RLV++VAK YQ + DL+QEG GL RG EK+D KG+KFST
Sbjct: 152 QRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFST 208
[124][TOP]
>UniRef100_Q0IBE2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IBE2_SYNS3
Length = 318
Score = 103 bits (257), Expect = 1e-20
Identities = 54/131 (41%), Positives = 82/131 (62%), Gaps = 1/131 (0%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFA-QWATMA 364
+D +RS LL+ +E+ L +Q+L+ LE L+ +L ++ GG+ +WA A
Sbjct: 7 ADLVRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAA 66
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
G+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK
Sbjct: 67 GMSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 126
Query: 545 YDASKGFKFST 577
+D ++G+KFST
Sbjct: 127 FDPTRGYKFST 137
[125][TOP]
>UniRef100_A2C8C3 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C8C3_PROM3
Length = 320
Score = 103 bits (257), Expect = 1e-20
Identities = 54/129 (41%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+L+ LE+L+ +L K G + + A AG+
Sbjct: 11 DLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGL 70
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ L+K+L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 71 SELQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 130
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 131 PTRGYKFST 139
[126][TOP]
>UniRef100_A4CVK0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CVK0_SYNPV
Length = 322
Score = 103 bits (257), Expect = 1e-20
Identities = 55/131 (41%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFA-QWATMA 364
+D +RS LL+ +E+ L +Q+L++LE ++ +L EK GG+ A + A A
Sbjct: 10 ADLVRSYLRDIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAA 69
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
G+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK
Sbjct: 70 GLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 129
Query: 545 YDASKGFKFST 577
+D ++G+KFST
Sbjct: 130 FDPTRGYKFST 140
[127][TOP]
>UniRef100_A3IUR2 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3IUR2_9CHRO
Length = 369
Score = 103 bits (257), Expect = 1e-20
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL A EEV+L+ +Q L++ E+ ++ L E+ PT A+W G + QK RL+ G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 185
[128][TOP]
>UniRef100_A0YTG7 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTG7_9CYAN
Length = 319
Score = 103 bits (257), Expect = 1e-20
Identities = 52/130 (40%), Positives = 82/130 (63%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT +E+ + +Q L++ +E LA++ G +P++A+WA AG
Sbjct: 9 TDSVRTYLREIGRVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAG 68
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
V K L++ L G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+
Sbjct: 69 VSLKELKQALEDGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 128
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 129 DPTKGYRFST 138
[129][TOP]
>UniRef100_Q0DFH9 Os05g0589200 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group
RepID=Q0DFH9_ORYSJ
Length = 464
Score = 103 bits (256), Expect = 1e-20
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 4/187 (2%)
Frame = +2
Query: 29 EQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV----HYSDP 196
E+ +D + RSG+ ERK +R++A+ K + VS K S KK +Q + +Y
Sbjct: 201 EEQNDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYPGR 258
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQ 376
RS+ E+ L I++ LEK++E+L K G + + A WA AG+D+
Sbjct: 259 RRSI-----------VREQSALLVTIKECANLEKIRENLL-KDGSEVSHASWAKAAGIDE 306
Query: 377 KTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDAS 556
LR RL G C+E+++ + LV +AK Y G G + +DL+Q G G++ GAEK+D+
Sbjct: 307 ALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQ 366
Query: 557 KGFKFST 577
KG KFST
Sbjct: 367 KGCKFST 373
[130][TOP]
>UniRef100_B1WQ30 RNA polymerase sigma factor n=2 Tax=Cyanothece sp. ATCC 51142
RepID=B1WQ30_CYAA5
Length = 374
Score = 103 bits (256), Expect = 1e-20
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL A EEV+L+ +Q L++ E+ ++ L E P+ A+WA G + QK RL+ G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 190
[131][TOP]
>UniRef100_A9BD74 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BD74_PROM4
Length = 335
Score = 103 bits (256), Expect = 1e-20
Identities = 52/130 (40%), Positives = 79/130 (60%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +RS LL+ +E+ L +Q+L+ LE L++D G +P + A+ AG
Sbjct: 25 NDLIRSYLRDIGRVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAG 84
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+K+ G KE+M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EK+
Sbjct: 85 LTVGALKKKFRLGERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 145 DPARGYKFST 154
[132][TOP]
>UniRef100_B5W8F6 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5W8F6_SPIMA
Length = 332
Score = 103 bits (256), Expect = 1e-20
Identities = 49/129 (37%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +R+ LLT EE+ + +Q ++ L +++++L ++ PT A+W+ AG+
Sbjct: 23 DAVRTYLHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGL 82
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ + + +N G K+KMI++N+RLV+S+AK YQ M DL+QEG GL RG EK+D
Sbjct: 83 SESEMTEIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 142
Query: 551 ASKGFKFST 577
+G+KFST
Sbjct: 143 PMRGYKFST 151
[133][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 103 bits (256), Expect = 1e-20
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Frame = +2
Query: 17 EDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDP 196
ED + + ++ D+ G++T R A + R++ ++ + D
Sbjct: 29 EDIELELEETSDSNDGKKTRRLA--------------------SARRRNAARKKPYTEDS 68
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLA----EKFGGQ---------- 334
+R RLL A EE++L+ I DL+KLE+++ED ++G Q
Sbjct: 69 IRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIEKI 128
Query: 335 -------------------------PTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSN 439
P +W + ++RL +G KEKM++SN
Sbjct: 129 IVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSN 188
Query: 440 IRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 189 LRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 234
[134][TOP]
>UniRef100_A4CYD7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CYD7_SYNPV
Length = 355
Score = 103 bits (256), Expect = 1e-20
Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFA-QWATMAG 367
D +RS LL+ +E+ L +Q+L++LE ++ +L EK GG+ A + A AG
Sbjct: 45 DLVRSYLRDIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAG 104
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 105 LSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 164
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 165 DPTRGYKFST 174
[135][TOP]
>UniRef100_Q6L565 Putative RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=Q6L565_ORYSJ
Length = 882
Score = 103 bits (256), Expect = 1e-20
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 4/187 (2%)
Frame = +2
Query: 29 EQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV----HYSDP 196
E+ +D + RSG+ ERK +R++A+ K + VS K S KK +Q + +Y
Sbjct: 526 EEQNDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYPGR 583
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQ 376
RS+ E+ L I++ LEK++E+L K G + + A WA AG+D+
Sbjct: 584 RRSI-----------VREQSALLVTIKECANLEKIRENLL-KDGSEVSHASWAKAAGIDE 631
Query: 377 KTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDAS 556
LR RL G C+E+++ + LV +AK Y G G + +DL+Q G G++ GAEK+D+
Sbjct: 632 ALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQ 691
Query: 557 KGFKFST 577
KG KFST
Sbjct: 692 KGCKFST 698
[136][TOP]
>UniRef100_Q6I5E7 Putative uncharacterized protein OSJNBa0022J22.1 n=1 Tax=Oryza
sativa Japonica Group RepID=Q6I5E7_ORYSJ
Length = 799
Score = 103 bits (256), Expect = 1e-20
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 4/187 (2%)
Frame = +2
Query: 29 EQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV----HYSDP 196
E+ +D + RSG+ ERK +R++A+ K + VS K S KK +Q + +Y
Sbjct: 443 EEQNDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYPGR 500
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQ 376
RS+ E+ L I++ LEK++E+L K G + + A WA AG+D+
Sbjct: 501 RRSI-----------VREQSALLVTIKECANLEKIRENLL-KDGSEVSHASWAKAAGIDE 548
Query: 377 KTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDAS 556
LR RL G C+E+++ + LV +AK Y G G + +DL+Q G G++ GAEK+D+
Sbjct: 549 ALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQ 608
Query: 557 KGFKFST 577
KG KFST
Sbjct: 609 KGCKFST 615
[137][TOP]
>UniRef100_Q7NEW6 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NEW6_GLOVI
Length = 362
Score = 102 bits (255), Expect = 2e-20
Identities = 54/115 (46%), Positives = 76/115 (66%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EEV+L++ +Q L+KL L+E L G + + QWA A V L++++ G
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSR 122
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K+KMI++N+RLV+SVAK YQ G+ L DLVQEG GL R EK+D +KG++FST
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFST 177
[138][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 102 bits (255), Expect = 2e-20
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 39/226 (17%)
Frame = +2
Query: 17 EDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDP 196
ED + + + D+ G++T R A + R++ ++ + D
Sbjct: 29 EDIELELEEVSDSNDGKKTRRLA--------------------SARRRDAARKKPYTEDS 68
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQED---------------------- 310
+R RLL A EE++L+ I DL+KLE+++ED
Sbjct: 69 IRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIEKI 128
Query: 311 LAEKFGGQPTFA-----------------QWATMAGVDQKTLRKRLNYGVFCKEKMIKSN 439
+AEK +P + +W + ++RL +G KEKM++SN
Sbjct: 129 IAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSN 188
Query: 440 IRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 189 LRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 234
[139][TOP]
>UniRef100_B4W0H2 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0H2_9CYAN
Length = 352
Score = 102 bits (255), Expect = 2e-20
Identities = 52/144 (36%), Positives = 83/144 (57%)
Frame = +2
Query: 146 TGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKF 325
T K T+ +D +R+ LLT +E+ + +Q ++ L + ++ LAE
Sbjct: 28 TVNTKPKTTKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETL 87
Query: 326 GGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLV 505
+PT +WA +++ L+K +N G K KMI++N+RLV+++AK YQ M DL+
Sbjct: 88 EREPTMQEWADHVDLEESALKKIINQGTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLI 147
Query: 506 QEGCRGLVRGAEKYDASKGFKFST 577
QEG GL RG EK+D ++G+KFST
Sbjct: 148 QEGTLGLERGVEKFDPTRGYKFST 171
[140][TOP]
>UniRef100_A3Z7W8 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z7W8_9SYNE
Length = 321
Score = 102 bits (255), Expect = 2e-20
Identities = 55/130 (42%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPT-FAQWATMAG 367
D +RS LL+ +E+ L +Q+L++LE L+ +L ++ GG+ A+ AT AG
Sbjct: 11 DLVRSYLRDIGRVPLLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAG 70
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 71 LSALQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 130
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 131 DPTRGYKFST 140
[141][TOP]
>UniRef100_A0YY85 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YY85_9CYAN
Length = 331
Score = 102 bits (255), Expect = 2e-20
Identities = 49/115 (42%), Positives = 74/115 (64%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL A+EE++L+ I+ L+ ++L+E+L + G P ++ AT G+ + L + G+
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K+KMI SN+RLV+S+AK Y G+ DL+QEG GL R EK+D KG+KFST
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFST 147
[142][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q98RZ3_GUITH
Length = 460
Score = 102 bits (255), Expect = 2e-20
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +2
Query: 230 RLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV-DQKTLRKRLNYG 406
RLL EE++L+ I L+ E ++ L +K +PT ++W V D + R L+
Sbjct: 126 RLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAACKVSDVRKFRSILHNA 185
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KE+M+ +N+RLV+S+AK Y GMSLQDL+QEG GL+R AEK+D+ KGFKFST
Sbjct: 186 RRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFST 242
[143][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 102 bits (254), Expect = 2e-20
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Frame = +2
Query: 17 EDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDP 196
ED + + ++ D+ G++T R A + R++ ++ + D
Sbjct: 29 EDIELELEETSDSNDGKKTRRLA--------------------SARRRDAARKKPYTEDS 68
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLA----EKFGGQ---------- 334
+R RLL A EE++L+ I DL+KLE+++ED ++G Q
Sbjct: 69 IRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIEKI 128
Query: 335 -------------------------PTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSN 439
P +W + ++RL +G KEKM++SN
Sbjct: 129 IVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSN 188
Query: 440 IRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 189 LRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 234
[144][TOP]
>UniRef100_Q116K5 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q116K5_TRIEI
Length = 496
Score = 102 bits (253), Expect = 3e-20
Identities = 53/114 (46%), Positives = 70/114 (61%)
Frame = +2
Query: 236 LTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFC 415
L EE+ L+ I L+ LEK+ E L EK P +WAT A + + L RL G
Sbjct: 202 LHPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWELCDRLEQGRRA 261
Query: 416 KEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K +M+ +N+RLV SVAK YQ G+ QDL+QEG GL+R EK+D +KG+KFST
Sbjct: 262 KNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKGYKFST 315
[145][TOP]
>UniRef100_A3Z449 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z449_9SYNE
Length = 309
Score = 102 bits (253), Expect = 3e-20
Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPT-FAQWATMAGVDQKTLRKRLNYGV 409
LL+ +E+ L +Q+L++LE L+ +L ++ GG+ A+ AT AG+ L+++L G
Sbjct: 13 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 72
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D ++G+KFST
Sbjct: 73 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFST 128
[146][TOP]
>UniRef100_B8C0J0 Plastid RNA polymerase sigma factor (Fragment) n=1
Tax=Thalassiosira pseudonana CCMP1335 RepID=B8C0J0_THAPS
Length = 321
Score = 102 bits (253), Expect = 3e-20
Identities = 51/117 (43%), Positives = 75/117 (64%)
Frame = +2
Query: 227 TRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYG 406
T LLTA EE L ++ ++K E + E L+ + G P+ A+WA A + R+ +
Sbjct: 2 TELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWA--AACSPRLFREMMLTA 59
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K++M++ N+RLV+S+A+ Y G G+++QDLVQEG GL R AEK+D KGFKFST
Sbjct: 60 KEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFST 116
[147][TOP]
>UniRef100_Q5N3S3 Group2 RNA polymerase sigma factor RpoD3 n=1 Tax=Synechococcus
elongatus PCC 6301 RepID=Q5N3S3_SYNP6
Length = 326
Score = 101 bits (252), Expect = 4e-20
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 1/139 (0%)
Frame = +2
Query: 164 VRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ-PT 340
V E SD +R+ LLT EEV L + +Q +KL++L++ L + G + P+
Sbjct: 7 VAKTETPTSDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPS 66
Query: 341 FAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCR 520
+WA AG+ + LR++ + G K KMI++N+RLV+SVAK Y M L DL+QEG
Sbjct: 67 DLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTI 126
Query: 521 GLVRGAEKYDASKGFKFST 577
G+ RG EK+D +KG++FST
Sbjct: 127 GMQRGVEKFDPTKGYRFST 145
[148][TOP]
>UniRef100_Q10WG0 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10WG0_TRIEI
Length = 384
Score = 101 bits (252), Expect = 4e-20
Identities = 54/115 (46%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EE++L++ IQ+L+ EKL E LA G PT ++ A AG + L RL+
Sbjct: 84 LLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRT 143
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K +MI SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D KG+KFST
Sbjct: 144 AKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFST 198
[149][TOP]
>UniRef100_A5GQ42 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GQ42_SYNR3
Length = 324
Score = 101 bits (252), Expect = 4e-20
Identities = 52/129 (40%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+L++LE+ + + + G +P+ + A+ G+
Sbjct: 15 DLVRSYLRDIGRVPLLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGI 74
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
LR+RL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 75 SPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 134
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 135 PTRGYKFST 143
[150][TOP]
>UniRef100_B9FLV6 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group
RepID=B9FLV6_ORYSJ
Length = 1012
Score = 101 bits (252), Expect = 4e-20
Identities = 67/200 (33%), Positives = 105/200 (52%), Gaps = 17/200 (8%)
Frame = +2
Query: 29 EQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV----HYSDP 196
E+ +D + RSG+ ERK +R++A+ K + VS K S KK +Q + +Y
Sbjct: 632 EEQNDVVIVRSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYPGR 689
Query: 197 LRSL-------------RSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQP 337
RS+ RS + ++ E + + LEK++E+L K G +
Sbjct: 690 RRSIVREQSALLVTIKRRSADAGVQWKASAAEERRRASAAECANLEKIRENLL-KDGSEV 748
Query: 338 TFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGC 517
+ A WA AG+D+ LR RL G C+E+++ + LV +AK Y G G + +DL+Q G
Sbjct: 749 SHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGK 808
Query: 518 RGLVRGAEKYDASKGFKFST 577
G++ GAEK+D+ KG KFST
Sbjct: 809 MGVLNGAEKFDSQKGCKFST 828
[151][TOP]
>UniRef100_Q7V934 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V934_PROMM
Length = 335
Score = 101 bits (251), Expect = 5e-20
Identities = 53/129 (41%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+L+ LE+L+ +L + G + + A AG+
Sbjct: 26 DLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGL 85
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ L+K+L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 86 SELQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 145
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 146 PTRGYKFST 154
[152][TOP]
>UniRef100_Q7V6S8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V6S8_PROMM
Length = 320
Score = 101 bits (251), Expect = 5e-20
Identities = 53/129 (41%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+L+ LE+L+ +L + G + + A AG+
Sbjct: 11 DLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGL 70
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ L+K+L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 71 SELQLKKKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 130
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 131 PTRGYKFST 139
[153][TOP]
>UniRef100_B0C249 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0C249_ACAM1
Length = 327
Score = 101 bits (251), Expect = 5e-20
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT EE+ + +Q ++ L LQ+ + ++ G +P+ +WA A
Sbjct: 17 TDMVRTYLHEIGRVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKAN 76
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L L+ G K+KMI++N+RLV+SVAK YQ + L DL+QEG GL RG EK+
Sbjct: 77 LSPSQLELSLHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKF 136
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 137 DPTRGYKFST 146
[154][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 101 bits (251), Expect = 5e-20
Identities = 71/229 (31%), Positives = 101/229 (44%), Gaps = 39/229 (17%)
Frame = +2
Query: 8 EELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY 187
E++E E+ SDS D + R+ RR A K T
Sbjct: 29 EDIELELEETSDSNDGKKNRRLASARRRDAARKKPYTE---------------------- 66
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLA----EKFGGQ------- 334
D +R RLL A EE++L+ I DL+KLE+++ED ++G Q
Sbjct: 67 -DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERI 125
Query: 335 ----------------------------PTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 430
P +W + ++RL +G KEKM+
Sbjct: 126 EKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMV 185
Query: 431 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D KG+KFST
Sbjct: 186 QSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 234
[155][TOP]
>UniRef100_Q31QG5 RNA polymerase sigma factor rpoD3 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD3_SYNE7
Length = 320
Score = 101 bits (251), Expect = 5e-20
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Frame = +2
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQ-PTFAQW 352
E SD +R+ LLT EEV L + +Q +KL++L++ L + G + P+ +W
Sbjct: 5 ETPTSDLVRTYLREIGRVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEW 64
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A AG+ + LR++ + G K KMI++N+RLV+SVAK Y M L DL+QEG G+ R
Sbjct: 65 AAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQR 124
Query: 533 GAEKYDASKGFKFST 577
G EK+D +KG++FST
Sbjct: 125 GVEKFDPTKGYRFST 139
[156][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001983B83
Length = 561
Score = 100 bits (250), Expect = 6e-20
Identities = 60/175 (34%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHY-SDPLRSLRSTTRATR 232
RS R ER++++ R A V GS + + + E + DPLR +
Sbjct: 205 RSTRLLERRSKKRRNPKVA----VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRK 260
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLTA EE +L IQ+L++LE++++ L +PT +WA G+ + L+ +L+ G
Sbjct: 261 LLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNR 320
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
++K+I +N+R+V+ +AK YQG G++LQDL+QEG GL+ EK+ + G +F++
Sbjct: 321 SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFAS 375
[157][TOP]
>UniRef100_Q3B0L4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3B0L4_SYNS9
Length = 332
Score = 100 bits (250), Expect = 6e-20
Identities = 53/129 (41%), Positives = 78/129 (60%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LLT +E+ L +Q L+++E L+ +L + G +P Q A A +
Sbjct: 23 DLVRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAEL 82
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 83 STVQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 142
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 143 PTRGYKFST 151
[158][TOP]
>UniRef100_A5GM05 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GM05_SYNPW
Length = 322
Score = 100 bits (250), Expect = 6e-20
Identities = 55/131 (41%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPT-FAQWATMA 364
+D +RS LL+ +E+ L +Q+L+ LE + +L EK GG+ A+ A A
Sbjct: 10 ADLVRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAA 69
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
G+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK
Sbjct: 70 GLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 129
Query: 545 YDASKGFKFST 577
+D ++G+KFST
Sbjct: 130 FDPTRGYKFST 140
[159][TOP]
>UniRef100_Q062S3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q062S3_9SYNE
Length = 332
Score = 100 bits (250), Expect = 6e-20
Identities = 53/129 (41%), Positives = 78/129 (60%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LLT +E+ L +Q L+++E L+ +L + G +P Q A A +
Sbjct: 23 DLVRSYLRDIGRVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAEL 82
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 83 STVQLKRKLQQGHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 142
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 143 PTRGYKFST 151
[160][TOP]
>UniRef100_Q8RWR8 Sigma factor protein n=1 Tax=Zea mays RepID=Q8RWR8_MAIZE
Length = 568
Score = 100 bits (250), Expect = 6e-20
Identities = 62/186 (33%), Positives = 103/186 (55%)
Frame = +2
Query: 20 DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPL 199
DA ++ S + RSG+ ERK RR+RA+ + S K R K+ R + S +
Sbjct: 204 DAGQEDSQMVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSR--KASSSQFI 261
Query: 200 RSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQK 379
+S R++ + LS I++ LEK++E + ++ G + ++ +WA AGVD+
Sbjct: 262 SEWKSHPGQRRIIVREQSALLST-IKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEA 319
Query: 380 TLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASK 559
L RL G C+++++ + LV +A+ Y G G +L DL+Q G G++ GAEK+D+ K
Sbjct: 320 ELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFDSRK 379
Query: 560 GFKFST 577
G +FST
Sbjct: 380 GCRFST 385
[161][TOP]
>UniRef100_B7FPT1 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7FPT1_PHATR
Length = 324
Score = 100 bits (250), Expect = 6e-20
Identities = 54/117 (46%), Positives = 71/117 (60%)
Frame = +2
Query: 227 TRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYG 406
T LLTA EE L IQ +IK E + E L+ K PT +WA G + +
Sbjct: 9 TELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTS 68
Query: 407 VFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K++M++SN+RLV+S+A+ Y G+SLQDLVQEG GL R AEK++ KGFKFST
Sbjct: 69 REAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFST 125
[162][TOP]
>UniRef100_Q117X0 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q117X0_TRIEI
Length = 336
Score = 100 bits (249), Expect = 8e-20
Identities = 50/129 (38%), Positives = 77/129 (59%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +R+ LLT EE+ + +Q +++ +L+E L EK T +WA V
Sbjct: 27 DTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLEWAEHLLV 86
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+K L++ + G K+KMI++N+RLV+++AK YQ M DL+QEG GL RG EK+D
Sbjct: 87 SEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 146
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 147 PTRGYKFST 155
[163][TOP]
>UniRef100_B8HR54 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7425 RepID=B8HR54_CYAP4
Length = 318
Score = 100 bits (249), Expect = 8e-20
Identities = 46/115 (40%), Positives = 77/115 (66%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLT +E+ + +Q L +++++E+L+++ G +P +WAT A + + L+ +N G
Sbjct: 23 LLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNRGEL 82
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D +KG++FST
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFST 137
[164][TOP]
>UniRef100_B7KAB6 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 7424 RepID=B7KAB6_CYAP7
Length = 318
Score = 100 bits (249), Expect = 8e-20
Identities = 48/130 (36%), Positives = 82/130 (63%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+DP+R+ LLT EE+ L++ +Q + L+ +++ L + +P ++WA+ A
Sbjct: 8 TDPVRAYLREIGRVPLLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAK 67
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ ++ L + + G KEKM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+
Sbjct: 68 ITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 128 DPTKGYRFST 137
[165][TOP]
>UniRef100_A5GI14 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GI14_SYNPW
Length = 355
Score = 100 bits (249), Expect = 8e-20
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPT-FAQWATMAG 367
D +RS LL+ +E+ L +Q+L+ LE + +L EK GG+ A+ A AG
Sbjct: 45 DLVRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAG 104
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 105 LSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 164
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 165 DPTRGYKFST 174
[166][TOP]
>UniRef100_Q9ZP70 Chloroplast sigma factor (Fragment) n=1 Tax=Triticum aestivum
RepID=Q9ZP70_WHEAT
Length = 461
Score = 100 bits (249), Expect = 8e-20
Identities = 70/194 (36%), Positives = 98/194 (50%), Gaps = 3/194 (1%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSG---RQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQ 175
S E +D + + S + ARSG RQ RR R K + V + R R
Sbjct: 91 SAEDDDGKGRSSSVVVARSGVSARQRRMSGRR-RGRSKKGSGAVHLSISPELLQSRNRIY 149
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWA 355
LR T + LLT + V LS+ I+D I L++ + L EK G +P++ Q A
Sbjct: 150 ----------LRGTV-SKELLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMA 198
Query: 356 TMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRG 535
+ LR R+ +E + SNIRLVIS+A+ Y G+ L DL+Q G GL+RG
Sbjct: 199 QSLRISTPELRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRG 258
Query: 536 AEKYDASKGFKFST 577
EK+DAS+GF+ ST
Sbjct: 259 IEKFDASRGFRIST 272
[167][TOP]
>UniRef100_C0PCY3 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=C0PCY3_MAIZE
Length = 565
Score = 100 bits (249), Expect = 8e-20
Identities = 62/186 (33%), Positives = 103/186 (55%)
Frame = +2
Query: 20 DAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPL 199
DA ++ S + RSG+ ERK RR+RA+ + S K R K+ R + S +
Sbjct: 201 DAGQEDSQVVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSR--KASSSQFI 258
Query: 200 RSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQK 379
+S R++ + LS I++ LEK++E + ++ G + ++ +WA AGVD+
Sbjct: 259 SEWKSHPGQRRIIVREQSALLST-IKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVDEA 316
Query: 380 TLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASK 559
L RL G C+++++ + LV +A+ Y G G +L DL+Q G G++ GAEK+D+ K
Sbjct: 317 ELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFDSRK 376
Query: 560 GFKFST 577
G +FST
Sbjct: 377 GCRFST 382
[168][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZW2_NOSP7
Length = 332
Score = 100 bits (248), Expect = 1e-19
Identities = 50/133 (37%), Positives = 82/133 (61%)
Frame = +2
Query: 179 VHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWAT 358
++ +D +R+ LLT +E+ ++ +Q ++ L +E LA + QPT +W
Sbjct: 19 LYTADTVRAYLREIGRIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIE 78
Query: 359 MAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGA 538
+ +K+L ++L+ G K+KMI++N+RLV+S+AK YQ + DL+QEG GL RG
Sbjct: 79 NINIGEKSLLQQLHQGQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGV 138
Query: 539 EKYDASKGFKFST 577
EK+D +KG+KFST
Sbjct: 139 EKFDPTKGYKFST 151
[169][TOP]
>UniRef100_B5VZJ5 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Arthrospira
maxima CS-328 RepID=B5VZJ5_SPIMA
Length = 331
Score = 100 bits (248), Expect = 1e-19
Identities = 51/142 (35%), Positives = 84/142 (59%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
R ++T + +D +R+ LLT +E+ + +Q L++ + +LA++ G
Sbjct: 9 RGDAMKTAKTSDTDSVRAYLREIGRVPLLTHEQEIVYGKQVQQATLLQEKRNELAKQLGY 68
Query: 332 QPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQE 511
+PT AQWA + + L+ L+ G K KM+++N+RLV+SVAK Y + L DL+QE
Sbjct: 69 EPTEAQWAELVNLSVAQLQHILHQGQLAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQE 128
Query: 512 GCRGLVRGAEKYDASKGFKFST 577
G G+ RG EK+D +KG++FST
Sbjct: 129 GTIGMQRGVEKFDPTKGYRFST 150
[170][TOP]
>UniRef100_B4VH85 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4VH85_9CYAN
Length = 374
Score = 100 bits (248), Expect = 1e-19
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Frame = +2
Query: 119 NVVSFKFGST----GRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLI 286
N V +F T G+ ++ + D + + LL EE++L+ +Q L+
Sbjct: 34 NQVEVEFSETETRAGKSRQSGYHKTSSDDTVGAFFKEMARYPLLKPEEEIELATQVQFLV 93
Query: 287 KLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAK 466
+++++ E L ++ G +PT A+ A + ++ RL G K KMI+SN+RLV+S+AK
Sbjct: 94 EMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQISKRKMIRSNLRLVVSIAK 153
Query: 467 NYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 154 RYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFST 190
[171][TOP]
>UniRef100_Q9ZTL1 RNA polymerase sigma factor n=1 Tax=Cyanidium caldarium
RepID=Q9ZTL1_CYACA
Length = 589
Score = 100 bits (248), Expect = 1e-19
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Frame = +2
Query: 62 GRQTERKARRVRAAGKAATNVVSFK---FGSTGRKKRVRTQEVHYSDPLRSLRSTTRATR 232
G + E + A K ++ + + G KK R + + SD + +
Sbjct: 212 GEEDEVTIDEIEIAAKTVARIMDYSDSYWSDHGNKKNRRRRSTN-SDSFSTYLTEIGKVH 270
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
L+ EE ++ + I LE ++EDL + G P +WA + LR +L G
Sbjct: 271 RLSLEEEKEICQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRR 330
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K +M+ +N+RLVI AK ++ G++ QDLVQEG GL+RG EKYDA++GF+FST
Sbjct: 331 AKNRMVAANLRLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFST 385
[172][TOP]
>UniRef100_C5YWX9 Putative uncharacterized protein Sb09g030350 n=1 Tax=Sorghum
bicolor RepID=C5YWX9_SORBI
Length = 529
Score = 100 bits (248), Expect = 1e-19
Identities = 62/188 (32%), Positives = 103/188 (54%)
Frame = +2
Query: 14 LEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSD 193
L++ +++ S + RSG+ ERK +RVRA+ K + +S K KK R S
Sbjct: 160 LDEEEQEDSQVVVVRSGKSEERKLKRVRASEKGSR--ISVKVNPRRPKKSSRKAS---SS 214
Query: 194 PLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD 373
S + R + E+ L I++ LEK++E + ++ G + ++ +WA AG+D
Sbjct: 215 QFISEWKSHPGRRRIIVREQSALLATIKECASLEKIREKMVKE-GQEVSYHRWAEAAGMD 273
Query: 374 QKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDA 553
+ L RL G C+E+++ + LV +A++Y G G +L DL+Q G G++ GAEK+D
Sbjct: 274 EAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTGMGTALDDLLQAGKMGVLDGAEKFDT 333
Query: 554 SKGFKFST 577
KG +FST
Sbjct: 334 RKGCRFST 341
[173][TOP]
>UniRef100_B4FP19 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FP19_MAIZE
Length = 496
Score = 100 bits (248), Expect = 1e-19
Identities = 73/192 (38%), Positives = 102/192 (53%)
Frame = +2
Query: 2 TSEELEDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV 181
+S E ED E+ S + ARSG AR+ R +G+ VV GRK + E+
Sbjct: 129 SSTEDEDEDER-STVVVARSGVS----ARQRRMSGRRRGAVV-------GRKSVTVSPEL 176
Query: 182 HYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATM 361
S LR T + LLT + V+LS I+D I L+ + L EK G +P++ Q A
Sbjct: 177 MQSRNRIYLRGTV-SKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQS 235
Query: 362 AGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAE 541
+ LR R+ +E + SN RLVIS+A+ Y G+ L DL+Q G GL+RG E
Sbjct: 236 LRIPAPELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIE 295
Query: 542 KYDASKGFKFST 577
K+DAS+GF+ ST
Sbjct: 296 KFDASRGFRIST 307
[174][TOP]
>UniRef100_Q55525 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=Q55525_SYNY3
Length = 345
Score = 99.8 bits (247), Expect = 1e-19
Identities = 51/130 (39%), Positives = 79/130 (60%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +RS LLT +E+ L + +Q ++ L + ++ LA++ G +P+ +WA A
Sbjct: 34 ADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAAD 93
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ L + L G K KMI++N+RLV+++AK YQ M DL+QEG GL RG EK+
Sbjct: 94 LSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKF 153
Query: 548 DASKGFKFST 577
D +KG+KFST
Sbjct: 154 DPTKGYKFST 163
[175][TOP]
>UniRef100_B0JY74 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JY74_MICAN
Length = 377
Score = 99.8 bits (247), Expect = 1e-19
Identities = 51/116 (43%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL+A EE++L+ ++ L++ E++++ L E PT +WA+ +D ++ L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 193
[176][TOP]
>UniRef100_A3PFB9 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PFB9_PROM0
Length = 344
Score = 99.8 bits (247), Expect = 1e-19
Identities = 49/129 (37%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+ + +++E G +P+ + +T +
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNL 94
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 95 STSVIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 155 PARGYKFST 163
[177][TOP]
>UniRef100_B8AX92 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AX92_ORYSI
Length = 557
Score = 99.8 bits (247), Expect = 1e-19
Identities = 65/178 (36%), Positives = 98/178 (55%), Gaps = 4/178 (2%)
Frame = +2
Query: 56 RSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEV----HYSDPLRSLRSTTR 223
RSG+ ERK +R++A+ K + VS K S KK +Q + +Y RS+
Sbjct: 210 RSGKSQERKLKRMKASEKGSR--VSVKTPSRKSKKSSSSQFIAEWKNYPGRRRSI----- 262
Query: 224 ATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNY 403
E+ L I++ LEK++E+L K G + + A WA AG+D+ LR RL
Sbjct: 263 ------VREQSALLVTIKECANLEKIRENLL-KDGSEVSHASWAKAAGIDEALLRSRLQE 315
Query: 404 GVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
G C+E+++ + LV +AK Y G G + +DL+Q G G++ GAEK+D+ KG KFST
Sbjct: 316 GYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQKGCKFST 373
[178][TOP]
>UniRef100_B7K8N4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7K8N4_CYAP7
Length = 328
Score = 99.4 bits (246), Expect = 2e-19
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Frame = +2
Query: 155 KKRVRTQEVHYS-DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
K +TQ+ +S D +R+ LLT +E+ + +Q ++ L + ++ LA + G
Sbjct: 5 KVNPKTQKPTFSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGK 64
Query: 332 QPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQE 511
+P +WA + ++ L + + G K KMI++N+RLV+++AK YQ M DL+QE
Sbjct: 65 EPNLTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQE 124
Query: 512 GCRGLVRGAEKYDASKGFKFST 577
G GL RG EK+D +KG+KFST
Sbjct: 125 GSLGLERGVEKFDPTKGYKFST 146
[179][TOP]
>UniRef100_A2BTL1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BTL1_PROMS
Length = 344
Score = 99.4 bits (246), Expect = 2e-19
Identities = 49/129 (37%), Positives = 80/129 (62%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+++ ++ E G +P+ + + +
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNL 94
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
T++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 95 TTSTIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 155 PARGYKFST 163
[180][TOP]
>UniRef100_B9NYX2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9NYX2_PROMA
Length = 333
Score = 99.4 bits (246), Expect = 2e-19
Identities = 50/129 (38%), Positives = 79/129 (61%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+ + +L E G +P+ + +T +
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNL 83
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 84 STSIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 144 PARGYKFST 152
[181][TOP]
>UniRef100_Q9KHE4 RNA polymerase sigma factor n=1 Tax=Nostoc sp. PCC 7120
RepID=Q9KHE4_ANASP
Length = 390
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/115 (46%), Positives = 70/115 (60%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EEV+L+ ++ L ++ LQ DL + G PT AQ A + +K L RL G
Sbjct: 92 LLKPDEEVELARRVRFLEEVRDLQADLQLQIGQHPTKAQVAGQLEITEKQLENRLYQGRV 151
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R EK+D KG+KFST
Sbjct: 152 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFST 206
[182][TOP]
>UniRef100_Q3MDW4 RNA polymerase sigma factor n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MDW4_ANAVT
Length = 378
Score = 99.0 bits (245), Expect = 2e-19
Identities = 53/115 (46%), Positives = 70/115 (60%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EEV+L+ ++ L ++ LQ DL + G PT AQ A + +K L RL G
Sbjct: 80 LLKPDEEVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRV 139
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R EK+D KG+KFST
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFST 194
[183][TOP]
>UniRef100_Q0IDY7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0IDY7_SYNS3
Length = 335
Score = 99.0 bits (245), Expect = 2e-19
Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW-ATMAG 367
D +RS LL+ +E+ L +Q+L+ LE L+ +L ++ GG+ + A AG
Sbjct: 25 DLVRSYLRDIGRVPLLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAG 84
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
V L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+
Sbjct: 85 VSAAQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKF 144
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 145 DPTRGYKFST 154
[184][TOP]
>UniRef100_B8HQG4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HQG4_CYAP4
Length = 327
Score = 99.0 bits (245), Expect = 2e-19
Identities = 54/145 (37%), Positives = 81/145 (55%)
Frame = +2
Query: 143 STGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEK 322
ST + K + +D +R+ LLT +E+ L + +Q L++L + +E L
Sbjct: 2 STLKTKTQTRDSMVSTDMVRTYLHEIGRVPLLTHEQEIVLGKQVQQLMELLEAREKLTTS 61
Query: 323 FGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDL 502
PT +WA A + L + G K+KMI++N+RLV+SVAK YQ + L DL
Sbjct: 62 LDRSPTAEEWAEQANLSVADLNTAVRRGQRAKQKMIEANLRLVVSVAKKYQKRNLELLDL 121
Query: 503 VQEGCRGLVRGAEKYDASKGFKFST 577
+QEG GL RG EK+D ++G+KFST
Sbjct: 122 IQEGTLGLERGVEKFDPTRGYKFST 146
[185][TOP]
>UniRef100_B7K407 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801
RepID=B7K407_CYAP8
Length = 328
Score = 99.0 bits (245), Expect = 2e-19
Identities = 48/135 (35%), Positives = 81/135 (60%)
Frame = +2
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
Q ++ +D +R+ LLT +E+ + +Q ++ L ++++ L + G +P+ +W
Sbjct: 12 QPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEW 71
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A + + L+K + G K KMI++N+RLV+++AK YQ M DL+QEG GL R
Sbjct: 72 AKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 533 GAEKYDASKGFKFST 577
G EK+D +KG+KFST
Sbjct: 132 GVEKFDPTKGYKFST 146
[186][TOP]
>UniRef100_P94906 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa
RepID=P94906_MICAE
Length = 376
Score = 99.0 bits (245), Expect = 2e-19
Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL+A EE++L+ ++ L++ E++++ L E PT +WA +D ++ L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 193
[187][TOP]
>UniRef100_B1PVW0 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVW0_MICAE
Length = 377
Score = 99.0 bits (245), Expect = 2e-19
Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL+A EE++L+ ++ L++ E++++ L E PT +WA +D ++ L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 193
[188][TOP]
>UniRef100_Q03065 RNA polymerase sigma-B factor n=1 Tax=Nostoc sp. PCC 7120
RepID=RPSB_ANASP
Length = 332
Score = 99.0 bits (245), Expect = 2e-19
Identities = 46/115 (40%), Positives = 75/115 (65%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL+ +E+ ++ +Q ++ + +E+LAEK +PT +WA + + L ++L+ G
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K+KMI++N+RLV+S+AK YQ + DL+QEG GL RG EK+D + G+KFST
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFST 151
[189][TOP]
>UniRef100_B0JU57 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JU57_MICAN
Length = 328
Score = 98.6 bits (244), Expect = 3e-19
Identities = 50/144 (34%), Positives = 83/144 (57%)
Frame = +2
Query: 146 TGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKF 325
T + + ++Q +D +R+ LLT +E+ + +Q ++ L + +E L+++
Sbjct: 3 TAKTNQTQSQPTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQL 62
Query: 326 GGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLV 505
G +P +WA + + L + L G K KMI++N+RLV+++AK YQ M DL+
Sbjct: 63 GREPDRLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLI 122
Query: 506 QEGCRGLVRGAEKYDASKGFKFST 577
QEG GL RG EK+D +KG+KFST
Sbjct: 123 QEGSLGLERGVEKFDPTKGYKFST 146
[190][TOP]
>UniRef100_C7QM79 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
sp. PCC 8802 RepID=C7QM79_CYAP0
Length = 328
Score = 98.6 bits (244), Expect = 3e-19
Identities = 48/135 (35%), Positives = 81/135 (60%)
Frame = +2
Query: 173 QEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQW 352
Q ++ +D +R+ LLT +E+ + +Q ++ L ++++ L + G +P+ +W
Sbjct: 12 QPMYSADMVRTYLHEIGRVPLLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEW 71
Query: 353 ATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVR 532
A + + L+K + G K KMI++N+RLV+++AK YQ M DL+QEG GL R
Sbjct: 72 AKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 533 GAEKYDASKGFKFST 577
G EK+D +KG+KFST
Sbjct: 132 GVEKFDPTKGYKFST 146
[191][TOP]
>UniRef100_A8YCV8 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YCV8_MICAE
Length = 328
Score = 98.6 bits (244), Expect = 3e-19
Identities = 50/144 (34%), Positives = 82/144 (56%)
Frame = +2
Query: 146 TGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKF 325
T + + + Q +D +R+ LLT +E+ + +Q ++ L + +E L+++
Sbjct: 3 TAKTNQTQPQPTLNADMVRTYLHEIGRVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQL 62
Query: 326 GGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLV 505
G +P +WA + + L + L G K KMI++N+RLV+++AK YQ M DL+
Sbjct: 63 GREPQHLEWADSVNLSENELDRALKTGDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLI 122
Query: 506 QEGCRGLVRGAEKYDASKGFKFST 577
QEG GL RG EK+D +KG+KFST
Sbjct: 123 QEGSLGLERGVEKFDPTKGYKFST 146
[192][TOP]
>UniRef100_Q8DKM8 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DKM8_THEEB
Length = 309
Score = 98.2 bits (243), Expect = 4e-19
Identities = 49/115 (42%), Positives = 73/115 (63%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLT +E+ L + +Q ++ L + ++ L ++ G + TF +WA + L L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K+KMI++N+RLV+SVAK YQ + L DLVQEG GL RG EK+D ++G+KFST
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFST 128
[193][TOP]
>UniRef100_B0BZB6 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0BZB6_ACAM1
Length = 318
Score = 98.2 bits (243), Expect = 4e-19
Identities = 48/115 (41%), Positives = 70/115 (60%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EE+ + +Q + L+ L++DL E +PT A+WA A + L+K L G
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KM++SN+RLV+S+AK Y + + DL+QEG GL RG EK+D KG++FST
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFST 137
[194][TOP]
>UniRef100_Q710C2 Sigma factor (Fragment) n=1 Tax=Spinacia oleracea
RepID=Q710C2_SPIOL
Length = 548
Score = 98.2 bits (243), Expect = 4e-19
Identities = 52/173 (30%), Positives = 103/173 (59%)
Frame = +2
Query: 59 SGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLL 238
S R+ ERK R+ R + + + K S+ +H+ + ++ R R +
Sbjct: 199 SKRKEERKLRQERRLQASTSKRCACKSESSIESS------IHHVVSTAAKKTKARGRRAI 252
Query: 239 TASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCK 418
A E ++S GI+ + +LEK++ L ++ G + WA AG+D+K L+ L++G +C+
Sbjct: 253 IAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDLHFGWYCR 312
Query: 419 EKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
++++KS LV+ +++ Y+G G++ +DL+Q G G+++GAE++D ++G++FST
Sbjct: 313 DELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFST 365
[195][TOP]
>UniRef100_B8C130 RNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335
RepID=B8C130_THAPS
Length = 318
Score = 98.2 bits (243), Expect = 4e-19
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMA-- 364
D ++ T LL +EE+ L+ IQ LIK E+++E+L + PT+ +WA
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
G+ ++K++ + K + +SN+RLVIS+AK YQG G+++QDL QEG GL R EK
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEK 120
Query: 545 YDASKGFKFST 577
+D +GF+FST
Sbjct: 121 FDPERGFRFST 131
[196][TOP]
>UniRef100_B7GEJ9 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B7GEJ9_PHATR
Length = 329
Score = 98.2 bits (243), Expect = 4e-19
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS T LL +EE+ L +Q LI+ E +E L + PT+ +WAT
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 371 DQKT--LRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
D L+K++ + K + +SNIRLV+S+AK YQ G+S QDL QEG GL R EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 545 YDASKGFKFST 577
+D +GF+FST
Sbjct: 121 FDPERGFRFST 131
[197][TOP]
>UniRef100_Q2JT33 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JT33_SYNJA
Length = 364
Score = 97.8 bits (242), Expect = 5e-19
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 7/122 (5%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG-------VDQKTLRK 391
LL EEV L++ +QD +KL ++ L ++ G +PT A+WA A + + L++
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 392 RLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKF 571
G KE MIK+N+RLV+SVAK YQ G+ L DL+QEG GL R EK+D KG++F
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 177
Query: 572 ST 577
ST
Sbjct: 178 ST 179
[198][TOP]
>UniRef100_A8G7D5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G7D5_PROM2
Length = 344
Score = 97.8 bits (242), Expect = 5e-19
Identities = 49/129 (37%), Positives = 78/129 (60%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+ + + E G +P+ + +T +
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNL 94
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 95 STSIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 155 PARGYKFST 163
[199][TOP]
>UniRef100_B4VTM7 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Microcoleus chthonoplastes PCC 7420
RepID=B4VTM7_9CYAN
Length = 331
Score = 97.8 bits (242), Expect = 5e-19
Identities = 49/130 (37%), Positives = 78/130 (60%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT +E+ + +Q L LE+ +E L E+ G +PT +WA +
Sbjct: 20 TDLVRTYLQEIGRVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASS 79
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ + L+ + G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+
Sbjct: 80 LSEAELQSCIRAGQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKF 139
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 140 DPTKGYRFST 149
[200][TOP]
>UniRef100_A9SLV0 Plastid sigma factor SIG5 n=2 Tax=Physcomitrella patens
RepID=A9SLV0_PHYPA
Length = 632
Score = 97.8 bits (242), Expect = 5e-19
Identities = 54/117 (46%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLTA EE +L+ ++ + KLEKLQ+ L ++ G PT +WA AGVD +R+RL G
Sbjct: 334 LLTAVEENRLAVFMKPMKKLEKLQKVLMKQLGRDPTDEEWAAAAGVDLLIMRRRLALGRA 393
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSL--QDLVQEGCRGLVRGAEKYDASKGFKFST 577
+ K+I+ N+RLV+S A Y MSL QDL QEG GL++ +K+D KG++FST
Sbjct: 394 ARTKLIQRNLRLVLSQAYKYHKDSMSLSIQDLCQEGVIGLMQAVDKFDPGKGYRFST 450
[201][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 97.8 bits (242), Expect = 5e-19
Identities = 46/51 (90%), Positives = 51/51 (100%)
Frame = +2
Query: 425 MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
MIKSNIRLVIS+AKNYQG+GM++QDLVQEGCRGLVRGAEK+DASKGFKFST
Sbjct: 1 MIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFST 51
[202][TOP]
>UniRef100_B2J5S6 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J5S6_NOSP7
Length = 378
Score = 97.4 bits (241), Expect = 7e-19
Identities = 52/115 (45%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL A EEV+L+ ++ L ++ +LQ L K G +PT + A+ + +K L RL G
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R EK+D KG+KFST
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFST 194
[203][TOP]
>UniRef100_B2IZR4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2IZR4_NOSP7
Length = 339
Score = 97.4 bits (241), Expect = 7e-19
Identities = 56/154 (36%), Positives = 85/154 (55%)
Frame = +2
Query: 116 TNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLE 295
T V K S K+ R + D +RS LLT +EV ++ +Q ++ L
Sbjct: 9 TEVQKTKKKSLAADKKPRATD----DIVRSYLQEIGRVDLLTREQEVIFAQQVQLMMNLL 64
Query: 296 KLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQ 475
+E+LA K +PT +WA + + L +L+ G K+KMI++N+RLV++VAK YQ
Sbjct: 65 AAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQAKQKMIQANLRLVVAVAKKYQ 124
Query: 476 GSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
+ DL+QEG GL RG +K+D + G+KFST
Sbjct: 125 HRNLEFMDLIQEGTLGLERGVDKFDPALGYKFST 158
[204][TOP]
>UniRef100_Q4BWZ3 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4BWZ3_CROWT
Length = 374
Score = 97.4 bits (241), Expect = 7e-19
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQ-KTLRKRLNYGV 409
LL A EEV+L++ +Q L+++E+ ++ L E+ P+ A+ A G + K RL+ G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 190
[205][TOP]
>UniRef100_B1XNJ6 RNA polymerase sigma factor n=2 Tax=Synechococcus
RepID=B1XNJ6_SYNP2
Length = 365
Score = 97.4 bits (241), Expect = 7e-19
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQ-KTLRKRLNYGV 409
LL EE++L+ ++ L E+ + +L E+ G PT +WA++ G++ K L L G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 181
[206][TOP]
>UniRef100_A8YJF2 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YJF2_MICAE
Length = 377
Score = 97.4 bits (241), Expect = 7e-19
Identities = 51/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVD-QKTLRKRLNYGV 409
LL+A EE++L+ ++ L++ E++++ L E PT +WA +D ++ L RL G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 410 FCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D +KG+KFST
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFST 193
[207][TOP]
>UniRef100_O24348 Plastid RNA polymerase sigma factor n=1 Tax=Sorghum bicolor
RepID=O24348_SORBI
Length = 500
Score = 97.4 bits (241), Expect = 7e-19
Identities = 66/184 (35%), Positives = 94/184 (51%)
Frame = +2
Query: 26 QEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRS 205
Q F D D R T+ R+ A +S + GRK + E+ S
Sbjct: 130 QLPFEDE-DEDDERLTKAAVVVARSGVSARQRRMSGRRRGPGRKSVTVSPELMQSRNRIY 188
Query: 206 LRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTL 385
LR T + LLT + ++LS I+D I L+ + L EK G +P++ Q A + L
Sbjct: 189 LRGTV-SKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPEL 247
Query: 386 RKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGF 565
R R+ +E + SNIRLVIS+A+ Y G+ L DL+Q G GL+RG EK+DAS+GF
Sbjct: 248 RARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGF 307
Query: 566 KFST 577
+ ST
Sbjct: 308 RIST 311
[208][TOP]
>UniRef100_C5YHG2 Putative uncharacterized protein Sb07g004340 n=1 Tax=Sorghum
bicolor RepID=C5YHG2_SORBI
Length = 500
Score = 97.4 bits (241), Expect = 7e-19
Identities = 66/184 (35%), Positives = 94/184 (51%)
Frame = +2
Query: 26 QEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRS 205
Q F D D R T+ R+ A +S + GRK + E+ S
Sbjct: 130 QLPFEDE-DEDDERLTKAAVVVARSGVSARQRRMSGRRRGPGRKSVTVSPELMQSRNRIY 188
Query: 206 LRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTL 385
LR T + LLT + ++LS I+D I L+ + L EK G +P++ Q A + L
Sbjct: 189 LRGTV-SKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPEL 247
Query: 386 RKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGF 565
R R+ +E + SNIRLVIS+A+ Y G+ L DL+Q G GL+RG EK+DAS+GF
Sbjct: 248 RARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGF 307
Query: 566 KFST 577
+ ST
Sbjct: 308 RIST 311
[209][TOP]
>UniRef100_B1X4M1 Type II alternative RNA polymerase sigma factor, sigma-70 family
protein n=1 Tax=Paulinella chromatophora
RepID=B1X4M1_PAUCH
Length = 321
Score = 97.4 bits (241), Expect = 7e-19
Identities = 50/130 (38%), Positives = 80/130 (61%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +RS LLT +E+ L +Q+LI +++ ++ L K G +PT + A
Sbjct: 12 ADLVRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQEELANSLD 71
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ +++++ +G KE+M+ SN+RLV+S+AK Y M L DLVQEG GL+RG EK+
Sbjct: 72 LSINQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVEKF 131
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 132 DPTRGYKFST 141
[210][TOP]
>UniRef100_B0C599 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C599_ACAM1
Length = 318
Score = 97.1 bits (240), Expect = 9e-19
Identities = 45/115 (39%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL +E+ + +Q +I L++L++ L E+ +P ++WA A + L+K L G
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
KM++SN+RLV+S+AK Y + + DL+QEG GL RG EK+D +KG++FST
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFST 137
[211][TOP]
>UniRef100_B4WMN7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WMN7_9SYNE
Length = 467
Score = 97.1 bits (240), Expect = 9e-19
Identities = 48/115 (41%), Positives = 73/115 (63%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL +EE++L+ ++ ++++E E +E +PT A+ AT G + LR++L
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K +MI+SN+RLV+S+AK Y G+ DL+QEG GL R AEK+D KG+KFST
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFST 283
[212][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 97.1 bits (240), Expect = 9e-19
Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 46/206 (22%)
Frame = +2
Query: 98 AAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQ 277
A GK + + + G+KK + D +R RLL A EE++L+ I
Sbjct: 35 ADGKKTRKITASRRRDPGKKKP------YTEDSIRVYLQEIGRIRLLRAEEEIELARKIA 88
Query: 278 DLIKLEKLQEDLAEKFGGQPTFAQW----------------------------------- 352
DL++LE+++E L E+ +PT QW
Sbjct: 89 DLLQLERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSSKEKEPKWSEVTDMLQK 148
Query: 353 ATMAGVDQKT-----------LRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQD 499
A + +KT ++RL G K+KM+ SN+RLV+S+AK Y G+S QD
Sbjct: 149 AEIISDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQD 208
Query: 500 LVQEGCRGLVRGAEKYDASKGFKFST 577
L+QEG GL+R AEK+D KG+KFST
Sbjct: 209 LIQEGSLGLIRAAEKFDHEKGYKFST 234
[213][TOP]
>UniRef100_O22058 Plastid RNA polymerase sigma-subunit n=1 Tax=Arabidopsis thaliana
RepID=O22058_ARATH
Length = 571
Score = 97.1 bits (240), Expect = 9e-19
Identities = 42/119 (35%), Positives = 82/119 (68%)
Frame = +2
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
R R + E ++S G++ + +E+++ L E+ G + + WA AG+++K L + L+
Sbjct: 268 RKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLH 327
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
YG +C+++++KS LV+ +A+NY+G G++ +DL+Q G G+++GAE++D ++G+KFST
Sbjct: 328 YGWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFST 386
[214][TOP]
>UniRef100_Q2JIA4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JIA4_SYNJB
Length = 366
Score = 96.7 bits (239), Expect = 1e-18
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG-------VDQKTLRK 391
LL EEV L++ +QD +KL L+ L ++ G PT A+W A + + L++
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 392 RLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKF 571
G KE MIK+N+RLV+SVAK YQ G+ L DL+QEG GL R EK+D KG++F
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 179
Query: 572 ST 577
ST
Sbjct: 180 ST 181
[215][TOP]
>UniRef100_B8HU39 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HU39_CYAP4
Length = 372
Score = 96.7 bits (239), Expect = 1e-18
Identities = 49/115 (42%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL SEE++L+ ++ L++L +L++ L + G T + A + ++ L+ R+ G
Sbjct: 74 LLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQV 133
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DLVQEG GL R EK+D KGFKFST
Sbjct: 134 AKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKGFKFST 188
[216][TOP]
>UniRef100_B1XKF5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=B1XKF5_SYNP2
Length = 328
Score = 96.7 bits (239), Expect = 1e-18
Identities = 50/130 (38%), Positives = 77/130 (59%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT EE+ + +Q L+ L++ ++ L E + T +WA A
Sbjct: 17 ADMVRTYLREIGRVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQ 76
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ K L++ L G K KMI++N+RLV+++AK YQ + DL+QEG GL RG EK+
Sbjct: 77 LTPKQLQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKF 136
Query: 548 DASKGFKFST 577
D +KG+KFST
Sbjct: 137 DPTKGYKFST 146
[217][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 96.7 bits (239), Expect = 1e-18
Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 46/191 (24%)
Frame = +2
Query: 143 STGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEK 322
S R++ ++ + D +R RLL A EE++L+ I DL++LE+++E L E+
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 323 FGGQPTFAQW-----------------------------------ATMAGVDQKT----- 382
+PT QW A + +KT
Sbjct: 104 LDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLES 163
Query: 383 ------LRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
++RL G K+KM+ SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK
Sbjct: 164 KAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 223
Query: 545 YDASKGFKFST 577
+D KG+KFST
Sbjct: 224 FDHEKGYKFST 234
[218][TOP]
>UniRef100_Q05UJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05UJ7_9SYNE
Length = 341
Score = 96.7 bits (239), Expect = 1e-18
Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGG 331
R+ + V D +RS LL+ +E+ L +QDL++LE L+ +L + G
Sbjct: 18 RRSQSSRSAVAEVDLVRSYLRDIGRVPLLSHQQEITLGRQVQDLMELEALESELKSESGE 77
Query: 332 QPTFAQ-WATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQ 508
+ + A AG+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+Q
Sbjct: 78 EVVAPEALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQ 137
Query: 509 EGCRGLVRGAEKYDASKGFKFST 577
EG GLVRG EK+D ++G+KFST
Sbjct: 138 EGTIGLVRGVEKFDPTRGYKFST 160
[219][TOP]
>UniRef100_B9YSN2 RNA polymerase sigma factor n=1 Tax='Nostoc azollae' 0708
RepID=B9YSN2_ANAAZ
Length = 389
Score = 96.7 bits (239), Expect = 1e-18
Identities = 51/115 (44%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL EEV+L+ ++ L +++ LQ L E+ G QP+ ++ A + +K L RL G
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KMI+SN+RLV+S+AK Y G+ DL+QEG GL R EK+D KG+KFST
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFST 205
[220][TOP]
>UniRef100_O24621 Sigma factor 3 n=1 Tax=Arabidopsis thaliana RepID=O24621_ARATH
Length = 571
Score = 96.7 bits (239), Expect = 1e-18
Identities = 42/119 (35%), Positives = 82/119 (68%)
Frame = +2
Query: 221 RATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLN 400
R R + E ++S G++ + +E+++ L E+ G + + WA AG+++K L + L+
Sbjct: 268 RKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLH 327
Query: 401 YGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
YG +C+++++KS LV+ +A+NY+G G++ +DL+Q G G+++GAE++D ++G+KFST
Sbjct: 328 YGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFST 386
[221][TOP]
>UniRef100_A9SW01 Plastid sigma factor SIG1 n=2 Tax=Physcomitrella patens
RepID=A9SW01_PHYPA
Length = 677
Score = 96.7 bits (239), Expect = 1e-18
Identities = 66/185 (35%), Positives = 101/185 (54%), Gaps = 5/185 (2%)
Frame = +2
Query: 38 SDSIDARSGRQTERKARRVRAAGK-----AATNVVSFKFGSTGRKKRVRTQEVHYSDPLR 202
S S AR+ R+ E + RRV AGK A T K+ R +RV+ V D L
Sbjct: 302 SGSPSART-RRLESRQRRVAIAGKPTSPDALTIHPLKKYQKGERVRRVKFDGVQ--DYLT 358
Query: 203 SLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKT 382
+ LLT EEV LS+ ++ + L + ++ LA + G P+ +WA +
Sbjct: 359 TYLREITKINLLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGD 418
Query: 383 LRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKG 562
L ++L + ++KM+ +N+RLV+SVAK Y G+ + DL+QEG GL+RG EK+D ++G
Sbjct: 419 LVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRG 478
Query: 563 FKFST 577
+K ST
Sbjct: 479 YKLST 483
[222][TOP]
>UniRef100_Q8DM59 Group2 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus
elongatus BP-1 RepID=Q8DM59_THEEB
Length = 315
Score = 96.3 bits (238), Expect = 2e-18
Identities = 47/115 (40%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLT +EV + +Q L + +++E LA + +PT A+WA A + + L + G
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D +KG++FST
Sbjct: 80 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFST 134
[223][TOP]
>UniRef100_Q318B2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q318B2_PROM9
Length = 344
Score = 96.3 bits (238), Expect = 2e-18
Identities = 48/129 (37%), Positives = 79/129 (61%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+ + ++ E G +P+ + ++ +
Sbjct: 35 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNL 94
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 95 SIPIIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 154
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 155 PARGYKFST 163
[224][TOP]
>UniRef100_P73666 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
RepID=P73666_SYNY3
Length = 318
Score = 96.3 bits (238), Expect = 2e-18
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTF-AQWATMAG 367
D +R+ LLT EE+ ++ IQ ++ L ++++ LAE G+P ++WA A
Sbjct: 8 DSVRAYLREIGRVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAAD 67
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ + L K + G K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+
Sbjct: 68 LSIRELEKAIKEGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 548 DASKGFKFST 577
D +KG++FST
Sbjct: 128 DPTKGYRFST 137
[225][TOP]
>UniRef100_Q9ZTI3 RNA polymerase sigma factor 1 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI3_MAIZE
Length = 398
Score = 96.3 bits (238), Expect = 2e-18
Identities = 70/187 (37%), Positives = 98/187 (52%)
Frame = +2
Query: 17 EDAQEQFSDSIDARSGRQTERKARRVRAAGKAATNVVSFKFGSTGRKKRVRTQEVHYSDP 196
ED E+ S + ARSG AR+ R +G+ V GRK + E+ S
Sbjct: 36 EDEDER-STVVVARSGVS----ARQRRMSGRRRGAFV-------GRKSVTVSPELMQSRN 83
Query: 197 LRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQ 376
LR T + LLT + V+LS I+D I L+ + L EK G +P++ Q A +
Sbjct: 84 RIYLRGTV-SKDLLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPA 142
Query: 377 KTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDAS 556
LR R+ +E + SN RLVIS+A+ Y G+ L DL+Q G GL+RG EK+DAS
Sbjct: 143 PELRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDAS 202
Query: 557 KGFKFST 577
+GF+ ST
Sbjct: 203 RGFRIST 209
[226][TOP]
>UniRef100_Q7EY08 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
Japonica Group RepID=Q7EY08_ORYSJ
Length = 388
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTR-------ATRLLTASEEVKLSEGIQDLIKLEKLQED 310
R+ R + H++ ++S R + LLT + V LS I+D I L++ +
Sbjct: 51 RRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSK 110
Query: 311 LAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMS 490
L EK G +P++ Q A + LR R++ +E + SN+RLVIS+A+ Y G+
Sbjct: 111 LKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVE 170
Query: 491 LQDLVQEGCRGLVRGAEKYDASKGFKFST 577
L DL+Q G GL+RG EK+DAS+GF+ ST
Sbjct: 171 LADLIQGGLIGLLRGIEKFDASRGFRIST 199
[227][TOP]
>UniRef100_A2BZ14 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BZ14_PROM5
Length = 333
Score = 95.9 bits (237), Expect = 2e-18
Identities = 48/129 (37%), Positives = 77/129 (59%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+ + ++ E +P+ + A +
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNL 83
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 84 SSSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 144 PARGYKFST 152
[228][TOP]
>UniRef100_Q05XW0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05XW0_9SYNE
Length = 321
Score = 95.9 bits (237), Expect = 2e-18
Identities = 53/131 (40%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQ-WATMA 364
+D +RS LL+ +E+ L +QDL++LE L+ +L + G + A A
Sbjct: 10 ADLVRSYLRDIGRVPLLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKA 69
Query: 365 GVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEK 544
G+ L+++L G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK
Sbjct: 70 GLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 129
Query: 545 YDASKGFKFST 577
+D ++G+KFST
Sbjct: 130 FDPTRGYKFST 140
[229][TOP]
>UniRef100_Q9MTH2 Sigma factor 3 n=1 Tax=Sinapis alba RepID=Q9MTH2_SINAL
Length = 567
Score = 95.9 bits (237), Expect = 2e-18
Identities = 43/122 (35%), Positives = 83/122 (68%)
Frame = +2
Query: 212 STTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRK 391
S R R + E ++S+G++ + +E+++ L E+ G + + WA AG++QK L
Sbjct: 261 SKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKVASMSCWAEAAGMNQKLLMH 320
Query: 392 RLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKF 571
L++G +C+++++KS LV+ +A+NY+G G++ +DL+Q G G+++GAE++D ++G+KF
Sbjct: 321 NLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKF 380
Query: 572 ST 577
ST
Sbjct: 381 ST 382
[230][TOP]
>UniRef100_Q8S9C8 RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa
RepID=Q8S9C8_CYAPA
Length = 427
Score = 95.9 bits (237), Expect = 2e-18
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
SD S + LL+A EE++LS I+DL++LE +++ LA + G +P +WA AG
Sbjct: 102 SDSFNSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Query: 368 VDQ-KTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGS-GMSLQDLVQEGCRGLVRGAE 541
+ R+ G + ++++SN+R V+S+AK Y M LQDL+QEG GL++ AE
Sbjct: 162 TQPGPAFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAE 221
Query: 542 KYDASKGFKFST 577
++D KGFKF T
Sbjct: 222 RFDLDKGFKFLT 233
[231][TOP]
>UniRef100_Q0J7T6 Os08g0163400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q0J7T6_ORYSJ
Length = 520
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTR-------ATRLLTASEEVKLSEGIQDLIKLEKLQED 310
R+ R + H++ ++S R + LLT + V LS I+D I L++ +
Sbjct: 183 RRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSK 242
Query: 311 LAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMS 490
L EK G +P++ Q A + LR R++ +E + SN+RLVIS+A+ Y G+
Sbjct: 243 LKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVE 302
Query: 491 LQDLVQEGCRGLVRGAEKYDASKGFKFST 577
L DL+Q G GL+RG EK+DAS+GF+ ST
Sbjct: 303 LADLIQGGLIGLLRGIEKFDASRGFRIST 331
[232][TOP]
>UniRef100_O48655 Plastid RNA polymerase sigma factor n=1 Tax=Oryza sativa Japonica
Group RepID=O48655_ORYSJ
Length = 519
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTR-------ATRLLTASEEVKLSEGIQDLIKLEKLQED 310
R+ R + H++ ++S R + LLT + V LS I+D I L++ +
Sbjct: 182 RRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSK 241
Query: 311 LAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMS 490
L EK G +P++ Q A + LR R++ +E + SN+RLVIS+A+ Y G+
Sbjct: 242 LKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVE 301
Query: 491 LQDLVQEGCRGLVRGAEKYDASKGFKFST 577
L DL+Q G GL+RG EK+DAS+GF+ ST
Sbjct: 302 LADLIQGGLIGLLRGIEKFDASRGFRIST 330
[233][TOP]
>UniRef100_A3BPX7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3BPX7_ORYSJ
Length = 420
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTR-------ATRLLTASEEVKLSEGIQDLIKLEKLQED 310
R+ R + H++ ++S R + LLT + V LS I+D I L++ +
Sbjct: 83 RRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSK 142
Query: 311 LAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMS 490
L EK G +P++ Q A + LR R++ +E + SN+RLVIS+A+ Y G+
Sbjct: 143 LKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVE 202
Query: 491 LQDLVQEGCRGLVRGAEKYDASKGFKFST 577
L DL+Q G GL+RG EK+DAS+GF+ ST
Sbjct: 203 LADLIQGGLIGLLRGIEKFDASRGFRIST 231
[234][TOP]
>UniRef100_Q7EY07 Putative plastid RNA polymerase sigma factor n=2 Tax=Oryza sativa
RepID=Q7EY07_ORYSJ
Length = 342
Score = 95.9 bits (237), Expect = 2e-18
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Frame = +2
Query: 152 RKKRVRTQEVHYSDPLRSLRSTTR-------ATRLLTASEEVKLSEGIQDLIKLEKLQED 310
R+ R + H++ ++S R + LLT + V LS I+D I L++ +
Sbjct: 5 RRGRTKNGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSK 64
Query: 311 LAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMS 490
L EK G +P++ Q A + LR R++ +E + SN+RLVIS+A+ Y G+
Sbjct: 65 LKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVE 124
Query: 491 LQDLVQEGCRGLVRGAEKYDASKGFKFST 577
L DL+Q G GL+RG EK+DAS+GF+ ST
Sbjct: 125 LADLIQGGLIGLLRGIEKFDASRGFRIST 153
[235][TOP]
>UniRef100_Q3MBX2 Sigma 28 (Flagella/Sporulation) n=1 Tax=Anabaena variabilis ATCC
29413 RepID=Q3MBX2_ANAVT
Length = 332
Score = 95.5 bits (236), Expect = 3e-18
Identities = 45/115 (39%), Positives = 74/115 (64%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL+ EE++ + +Q L++++E+LA + G +P+ +WA A ++ L + G
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEV 96
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D +KG++FST
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFST 151
[236][TOP]
>UniRef100_Q10XF4 RNA polymerase, sigma 28 subunit n=1 Tax=Trichodesmium erythraeum
IMS101 RepID=Q10XF4_TRIEI
Length = 319
Score = 95.5 bits (236), Expect = 3e-18
Identities = 46/115 (40%), Positives = 72/115 (62%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL+ EE+ + +Q L L++ + LAE G +PT +WA + + L++ + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D +KG++FST
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFST 138
[237][TOP]
>UniRef100_Q9ZTI2 RNA polymerase sigma factor 2 (Fragment) n=1 Tax=Zea mays
RepID=Q9ZTI2_MAIZE
Length = 349
Score = 95.5 bits (236), Expect = 3e-18
Identities = 57/143 (39%), Positives = 80/143 (55%)
Frame = +2
Query: 149 GRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFG 328
GRK + E+ S LR T + LLT + ++LS I+D I L+ + L EK G
Sbjct: 19 GRKSVAISPELMQSRNRIYLRGTV-SKDLLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLG 77
Query: 329 GQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQ 508
+P++ Q A + LR R+ +E + SNIRLVIS+A Y G+ L DL+Q
Sbjct: 78 NEPSYKQLAQSLRISAPELRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQ 137
Query: 509 EGCRGLVRGAEKYDASKGFKFST 577
G GL+RG EK+DAS+GF+ ST
Sbjct: 138 GGLIGLLRGIEKFDASRGFRIST 160
[238][TOP]
>UniRef100_Q9KHE8 Group 2 sigma 70-type sigma factor D n=1 Tax=Nostoc sp. PCC 7120
RepID=Q9KHE8_ANASP
Length = 332
Score = 95.1 bits (235), Expect = 3e-18
Identities = 45/115 (39%), Positives = 75/115 (65%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LL+ EE++ + +Q L++++E+LA + G +P+ +WA A ++ L + + G
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEI 96
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D +KG++FST
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFST 151
[239][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 95.1 bits (235), Expect = 3e-18
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 44/189 (23%)
Frame = +2
Query: 143 STGRKKRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEK 322
S R++ ++ + D +R RLL A EE++L+ I DL++LE+++E L E+
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 323 FGGQPTFAQWA----TMAGVDQKT------------------------------------ 382
+P QW ++Q+
Sbjct: 104 LDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIISDLEKTWKQQSKA 163
Query: 383 ----LRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++RL G K+KM+ SN+RLV+S+AK Y G+S QDL+QEG GL+R AEK+D
Sbjct: 164 YLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 223
Query: 551 ASKGFKFST 577
KG+KFST
Sbjct: 224 HEKGYKFST 232
[240][TOP]
>UniRef100_B4AVJ3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AVJ3_9CHRO
Length = 328
Score = 95.1 bits (235), Expect = 3e-18
Identities = 46/130 (35%), Positives = 78/130 (60%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT +E+ + +Q ++ L + +++LA + +P+ +WA
Sbjct: 17 ADMVRTYLHEIGRVPLLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQ 76
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ ++ L + + G K KMI++N+RLV+++AK YQ M DL+QEG GL RG EK+
Sbjct: 77 MSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKF 136
Query: 548 DASKGFKFST 577
D +KG+KFST
Sbjct: 137 DPTKGYKFST 146
[241][TOP]
>UniRef100_B4W1N4 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W1N4_9CYAN
Length = 416
Score = 94.7 bits (234), Expect = 4e-18
Identities = 68/218 (31%), Positives = 101/218 (46%), Gaps = 27/218 (12%)
Frame = +2
Query: 5 SEELEDAQEQFSDSIDARSGRQTERKARRV---RAAGKAATNVVSFKFGSTGRKKRVRTQ 175
S +L+D +S+D E ++A + T++V GR + +R
Sbjct: 19 SLDLQDNHGDIDNSVDEFVDPDIEEDIDTTSFAKSANRRTTDLVRLYLQEIGRVRLLRRD 78
Query: 176 EVHYSDPLRSLRSTTRATRLLTASEEVKLSEG--IQDLIKLEKLQEDLAEKFGGQPTFAQ 349
E + + R RLL + E I+ + L + + LA + G +P+ +
Sbjct: 79 E-----EVSEAQKVQRYMRLLDLRAKFATPEEPVIEHFVHLIETHDRLASQLGHRPSLER 133
Query: 350 WATMAGVDQKTLRKRL----------------------NYGVFCKEKMIKSNIRLVISVA 463
WAT AGVD TL+ L G+ KE MIK+N+RLV+SVA
Sbjct: 134 WATTAGVDVATLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVA 193
Query: 464 KNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K YQ G+ L DL+QEG GL R EK+D +KG++FST
Sbjct: 194 KKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFST 231
[242][TOP]
>UniRef100_B4WSK5 RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1
Tax=Synechococcus sp. PCC 7335 RepID=B4WSK5_9SYNE
Length = 298
Score = 94.4 bits (233), Expect = 6e-18
Identities = 46/115 (40%), Positives = 69/115 (60%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLT EE+ L + +Q L+ L + L + +PT +WA G+ + L + G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K +M+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D SKG++FST
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFST 117
[243][TOP]
>UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZN70_NODSP
Length = 327
Score = 94.4 bits (233), Expect = 6e-18
Identities = 46/130 (35%), Positives = 77/130 (59%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT EE+ + +Q ++ L ++ LA++ P+ +WA
Sbjct: 17 ADMVRTYLREIGRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVN 76
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ +K + + + G K+KMI++N+RLV+++AK YQ M DL+QEG GL RG EK+
Sbjct: 77 LPEKEVTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKF 136
Query: 548 DASKGFKFST 577
D ++G+KFST
Sbjct: 137 DPTRGYKFST 146
[244][TOP]
>UniRef100_Q9KHE5 RNA polymerase sigma factor n=1 Tax=Nostoc sp. PCC 7120
RepID=Q9KHE5_ANASP
Length = 327
Score = 94.0 bits (232), Expect = 8e-18
Identities = 46/130 (35%), Positives = 76/130 (58%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT +E+ + +Q ++ L +E LA+K +P+ +WA
Sbjct: 17 ADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQ 76
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ +++ + G K+KMI++N+RLV+++AK YQ M DL+QEG GL RG EK+
Sbjct: 77 KSETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKF 136
Query: 548 DASKGFKFST 577
D +G+KFST
Sbjct: 137 DPMRGYKFST 146
[245][TOP]
>UniRef100_Q7UZM9 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7UZM9_PROMP
Length = 333
Score = 94.0 bits (232), Expect = 8e-18
Identities = 48/129 (37%), Positives = 77/129 (59%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +RS LL+ +E+ L +Q+ +++E+ + ++ E +P+ + A +
Sbjct: 24 DLVRSYLRDIGRVPLLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNL 83
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
++KRL G KE+M+ +N+RLV+SVAK Y M L DL+QEG GLVRG EK+D
Sbjct: 84 STSQIKKRLRAGQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFD 143
Query: 551 ASKGFKFST 577
++G+KFST
Sbjct: 144 PARGYKFST 152
[246][TOP]
>UniRef100_Q3MBV9 RNA polymerase sigma factor n=1 Tax=Anabaena variabilis ATCC 29413
RepID=Q3MBV9_ANAVT
Length = 327
Score = 94.0 bits (232), Expect = 8e-18
Identities = 46/130 (35%), Positives = 76/130 (58%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT +E+ + +Q ++ L +E LA+K +P+ +WA
Sbjct: 17 ADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQ 76
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ +++ + G K+KMI++N+RLV+++AK YQ M DL+QEG GL RG EK+
Sbjct: 77 KSETEVKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKF 136
Query: 548 DASKGFKFST 577
D +G+KFST
Sbjct: 137 DPMRGYKFST 146
[247][TOP]
>UniRef100_B2J979 RNA polymerase, sigma 70 subunit, RpoD family n=1 Tax=Nostoc
punctiforme PCC 73102 RepID=B2J979_NOSP7
Length = 332
Score = 94.0 bits (232), Expect = 8e-18
Identities = 47/115 (40%), Positives = 70/115 (60%)
Frame = +2
Query: 233 LLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGVDQKTLRKRLNYGVF 412
LLT EE+ + +Q L + +E LA + G QPT +WA ++ L + + G
Sbjct: 37 LLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEI 96
Query: 413 CKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFST 577
K KM+++N+RLV+SVAK Y + L DL+QEG G+ RG EK+D +KG++FST
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFST 151
[248][TOP]
>UniRef100_D0CHN6 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CHN6_9SYNE
Length = 312
Score = 94.0 bits (232), Expect = 8e-18
Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Frame = +2
Query: 158 KRVRTQEVHYSDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKF-GGQ 334
K + TQ SDP+ +T LLT +EE++L +Q ++ L ED + +F G+
Sbjct: 6 KPLETQRRRSSDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMSLT---EDGSREFEDGE 62
Query: 335 PTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEG 514
T AQ R+ L G KE+M+K+N+RLV+SVAK YQG G+ L DL+QEG
Sbjct: 63 LTTAQ------------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEG 110
Query: 515 CRGLVRGAEKYDASKGFKFST 577
GL R EK+D ++G+KFST
Sbjct: 111 SLGLERAVEKFDPTRGYKFST 131
[249][TOP]
>UniRef100_A0YXP5 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YXP5_9CYAN
Length = 333
Score = 94.0 bits (232), Expect = 8e-18
Identities = 48/129 (37%), Positives = 76/129 (58%)
Frame = +2
Query: 191 DPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAGV 370
D +R+ LLT EE+ + +Q ++K + ++ L +K +P+ +WA +
Sbjct: 24 DTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVEL 83
Query: 371 DQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYD 550
+ L + L+ G K+KMI++N+RLV+S+AK YQ M DL+QEG GL RG EK+D
Sbjct: 84 TEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFD 143
Query: 551 ASKGFKFST 577
+G+KFST
Sbjct: 144 PMRGYKFST 152
[250][TOP]
>UniRef100_B2J2K2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=B2J2K2_NOSP7
Length = 321
Score = 93.6 bits (231), Expect = 1e-17
Identities = 47/130 (36%), Positives = 76/130 (58%)
Frame = +2
Query: 188 SDPLRSLRSTTRATRLLTASEEVKLSEGIQDLIKLEKLQEDLAEKFGGQPTFAQWATMAG 367
+D +R+ LLT +E+ ++ +Q L+ + E L + PT ++WA
Sbjct: 19 TDTVRAYLKEIGRIPLLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQ 78
Query: 368 VDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKY 547
+ ++ L ++LN G K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EK+
Sbjct: 79 LSEQELLQQLNQGKKAKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKF 138
Query: 548 DASKGFKFST 577
+ + G++FST
Sbjct: 139 NPALGYRFST 148