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[1][TOP] >UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula RepID=Q2MGQ5_MEDTR Length = 318 Score = 310 bits (794), Expect = 5e-83 Identities = 159/175 (90%), Positives = 163/175 (93%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRVKC+TD TLDV Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +SKDL SSDHTV PVD D+S SDGRGIIIVKLR+GQELRLRAIARKGIG Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASI--ESDGRGIIIVKLRRGQELRLRAIARKGIG 173 [2][TOP] >UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus communis RepID=B9RYB6_RICCO Length = 318 Score = 308 bits (788), Expect = 3e-82 Identities = 155/175 (88%), Positives = 164/175 (93%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 MEGASY R PR+KIRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQC+YCSVEFHLR KC+TD TLDV Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TSKDLYSSDHTVVPVDFS DSS ++S+ RGIIIVKLR+GQELRLRAIARKGIG Sbjct: 121 TSKDLYSSDHTVVPVDFS--DSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIG 173 [3][TOP] >UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1 Tax=Medicago sativa RepID=Q45NH1_MEDSA Length = 184 Score = 301 bits (770), Expect = 3e-80 Identities = 155/170 (91%), Positives = 160/170 (94%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPT+AIDLVEIEVNSSVLNDE Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60 Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL 426 FIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRVKC+TD TLDV+SKDL Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120 Query: 427 YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 SSDHTV PVD D +SVE SDGRGIIIVKLR+GQELRLRAIARKGIG Sbjct: 121 ISSDHTVTPVDVPGGD-ASVE-SDGRGIIIVKLRRGQELRLRAIARKGIG 168 [4][TOP] >UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7P9N6_VITVI Length = 318 Score = 300 bits (767), Expect = 7e-80 Identities = 150/175 (85%), Positives = 162/175 (92%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 MEG SY R P++KIRE+KDDY KFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KCMTD TLDV Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TSKDL SSDHTVVPVDFS DSS +++D +GIIIVKLR+GQELRLRAIARKGIG Sbjct: 121 TSKDLISSDHTVVPVDFS--DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIG 173 [5][TOP] >UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5B429_VITVI Length = 318 Score = 300 bits (767), Expect = 7e-80 Identities = 150/175 (85%), Positives = 162/175 (92%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 MEG SY R P++KIRE+KDDY KFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KCMTD TLDV Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TSKDL SSDHTVVPVDFS DSS +++D +GIIIVKLR+GQELRLRAIARKGIG Sbjct: 121 TSKDLISSDHTVVPVDFS--DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIG 173 [6][TOP] >UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR Length = 346 Score = 294 bits (752), Expect = 4e-78 Identities = 147/178 (82%), Positives = 159/178 (89%), Gaps = 3/178 (1%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 ME SY R P++KIRE+KDDY+KFELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLR KC+TD TLDV Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDF---SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TSKDLYSSDH V+PVDF S A+ T RGIIIVKLR+GQELRLRAIARKGIG Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIG 178 [7][TOP] >UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis thaliana RepID=RPB3A_ARATH Length = 319 Score = 283 bits (725), Expect = 5e-75 Identities = 142/175 (81%), Positives = 159/175 (90%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+GA+Y R P++KIRELKDDY KFELR+TD S+ANALRRVMISEVPTVAIDLVEIEVNSS Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEF L KC+TD TLDV Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS+DLYS+D TV PVDF+ DSS ++S+ +GIIIVKLR+GQEL+LRAIARKGIG Sbjct: 121 TSRDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIG 174 [8][TOP] >UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1 Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH Length = 319 Score = 280 bits (717), Expect = 4e-74 Identities = 141/175 (80%), Positives = 158/175 (90%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+GA+Y R P++KIRELKDDY KFELR+TD S+ANALRRVMISEVPTVAIDLVEIEVNSS Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIAHRLGLI LTSERAM MRFSRDCDACDGDGQCE+CSVEF L KC+TD TLDV Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS+DLYS+D TV PVDF+ DSS ++S+ +GIIIVKLR+GQEL+LRAIARKGIG Sbjct: 121 TSRDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIG 174 [9][TOP] >UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SHD1_PHYPA Length = 324 Score = 264 bits (675), Expect = 3e-69 Identities = 130/177 (73%), Positives = 152/177 (85%), Gaps = 2/177 (1%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+ SY R P V+IR++KDD +KFELRDTDAS+ANALRR+MI+EVPT+AIDLVEIE NSS Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEF+AHRLGLIP+ S+RAM MR SRDCDACDGDG+CEYCS+EFHL VKC D TLDV Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFS--AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS DL SSD +++PVD + AAD E++D RGI+IVKLRKGQEL+LRAIARKGIG Sbjct: 121 TSLDLVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIG 177 [10][TOP] >UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana RepID=A8MR04_ARATH Length = 235 Score = 253 bits (645), Expect = 1e-65 Identities = 126/175 (72%), Positives = 151/175 (86%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+G +Y R P VKIRELKDDY KFELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIA RL LIPLTSERAM MRF +DC+ C+GD CE+CSVEF L KC+TD TLDV Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS+DLYS+D TV PVDF+ ++SS+ ++S+ +GIII KLR+GQEL+L+A+ARKGIG Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIG 174 [11][TOP] >UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis thaliana RepID=RPB3B_ARATH Length = 319 Score = 253 bits (645), Expect = 1e-65 Identities = 126/175 (72%), Positives = 151/175 (86%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+G +Y R P VKIRELKDDY KFELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VLNDEFIA RL LIPLTSERAM MRF +DC+ C+GD CE+CSVEF L KC+TD TLDV Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS+DLYS+D TV PVDF+ ++SS+ ++S+ +GIII KLR+GQEL+L+A+ARKGIG Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIG 174 [12][TOP] >UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ Length = 330 Score = 252 bits (644), Expect = 1e-65 Identities = 134/183 (73%), Positives = 146/183 (79%), Gaps = 10/183 (5%) Frame = +1 Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237 G SY R PRV+IRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66 Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414 NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL + +D TL+VT Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126 Query: 415 SKDLYSSDHTVVPVDFSAA---------DSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 S DL S+D V PVD + A + +D RGI+IVKLR+GQELRLRAIARK Sbjct: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186 Query: 568 GIG 576 GIG Sbjct: 187 GIG 189 [13][TOP] >UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum bicolor RepID=C5X7D7_SORBI Length = 328 Score = 251 bits (642), Expect = 2e-65 Identities = 136/183 (74%), Positives = 147/183 (80%), Gaps = 10/183 (5%) Frame = +1 Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237 GASY R PRV+IR+LKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL Sbjct: 6 GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65 Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414 NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL + +D TL+VT Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 125 Query: 415 SKDLYSSDHTVVPVDFSAA--------DSSSVETS-DGRGIIIVKLRKGQELRLRAIARK 567 S DL S D V PVD + A D TS + RGI+IVKLR+GQELRLRAIARK Sbjct: 126 SNDLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQELRLRAIARK 185 Query: 568 GIG 576 GIG Sbjct: 186 GIG 188 [14][TOP] >UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea mays RepID=B6TCC3_MAIZE Length = 328 Score = 251 bits (640), Expect = 4e-65 Identities = 134/183 (73%), Positives = 147/183 (80%), Gaps = 10/183 (5%) Frame = +1 Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237 G SY R PRV+IRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65 Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414 NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL V +D TL+VT Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125 Query: 415 SKDLYSSDHTVVPVDFSAADSSSV---------ETSDGRGIIIVKLRKGQELRLRAIARK 567 S DL S D V PVD + A ++ +++ RGI+IVKLR+GQELRLRAIARK Sbjct: 126 SNDLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185 Query: 568 GIG 576 GIG Sbjct: 186 GIG 188 [15][TOP] >UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SM40_PHYPA Length = 385 Score = 178 bits (452), Expect = 2e-43 Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 2/175 (1%) Frame = +1 Query: 58 GASYARMPRVKIRELKD--DYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 G SY R+P V I E + ++F+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VL DEFIAHRLGLIPLTS+RAM M F +CD+C GD C+ C+VEF L VK D DV Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T +DL SS+ VVPV+ D V I I KL KGQE+ LRA+A+KG+G Sbjct: 137 TQRDLKSSNDAVVPVEID-VDKQGVLEECKMDICIAKLYKGQEITLRALAKKGMG 190 [16][TOP] >UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A699 Length = 275 Score = 171 bits (433), Expect = 4e-41 Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P +++ EL DD +KF + DTD SVAN++RR +++EVPT+AID VEI+ NSSVL+DE Sbjct: 3 YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FI+HR+GLIPLTS+ + + F+RDC + C CSVE L VKC D T VTS+D Sbjct: 63 FISHRVGLIPLTSDEVVDKLNFNRDCGC---EEFCSDCSVELSLDVKCTDDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ VVPV +SS D I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LLSSNQKVVPVPSRNQESSDYGEVD--DILIVKLRKGQELRLRAYAKKGFG 168 [17][TOP] >UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio rerio RepID=Q7ZV11_DANRE Length = 275 Score = 171 bits (433), Expect = 4e-41 Identities = 91/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170 [18][TOP] >UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1 Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU Length = 275 Score = 171 bits (432), Expect = 5e-41 Identities = 93/171 (54%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [19][TOP] >UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes RepID=UPI000001AB34 Length = 275 Score = 170 bits (430), Expect = 8e-41 Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID ++I+ NSSVL+DE Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPLTS+ + +++SRDC D C CSVE L V+C D T VTS+D Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCSECSVELTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFG 170 [20][TOP] >UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1 Tax=Antheraea pernyi RepID=Q76L19_ANTPE Length = 275 Score = 170 bits (430), Expect = 8e-41 Identities = 91/171 (53%), Positives = 116/171 (67%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL DD +KF + DT+ SVAN++RRV I+E PT+AID +++E NS+VL+DE Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L VKC D T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCAD---FCSECSVEFTLDVKCTDDQTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SSD VVPV D + + I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQELKLRAYAKKGFG 170 [21][TOP] >UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus RepID=UPI00003AA556 Length = 275 Score = 169 bits (429), Expect = 1e-40 Identities = 92/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I+IVKLRKGQEL+LRA A+KG G Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFG 170 [22][TOP] >UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus (Silurana) tropicalis RepID=Q6P7Y7_XENTR Length = 275 Score = 169 bits (429), Expect = 1e-40 Identities = 91/171 (53%), Positives = 122/171 (71%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + +++SRDC D C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [23][TOP] >UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG Length = 275 Score = 169 bits (429), Expect = 1e-40 Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID ++I+ NSSVL+DE Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPLTS+ + +++SRDC D C CSVE L V+C D T VTS+D Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFG 170 [24][TOP] >UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA Length = 275 Score = 169 bits (428), Expect = 1e-40 Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V++ EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + +++SRDC D C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [25][TOP] >UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI00019253CC Length = 273 Score = 169 bits (427), Expect = 2e-40 Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA PRVKI E DD +KF L +TD SVAN+LRR+ I+EVPT+AID V+IE N+SVL+DE Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62 Query: 247 FIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L VKC ++T VTS+D Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S D V+PV D + ET + I+IVKLRKGQEL+L A A+KG G Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFG 169 [26][TOP] >UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925380 Length = 289 Score = 169 bits (427), Expect = 2e-40 Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA PRVKI E DD +KF L +TD SVAN+LRR+ I+EVPT+AID V+IE N+SVL+DE Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62 Query: 247 FIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L VKC ++T VTS+D Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S D V+PV D + ET + I+IVKLRKGQEL+L A A+KG G Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFG 169 [27][TOP] >UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BL52_OSMMO Length = 275 Score = 169 bits (427), Expect = 2e-40 Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD +VAN++RRV +SEV T+AID ++I+ NSSVL+DE Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ V+PV + D+ + + II+VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQELRLRAYAKKGFG 170 [28][TOP] >UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Z918_BRAFL Length = 275 Score = 168 bits (426), Expect = 2e-40 Identities = 89/169 (52%), Positives = 119/169 (70%), Gaps = 1/169 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P+V + EL D+ +KF + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + M++SRDC + C C++E L VKC D T VT++D Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAE---FCADCAIELTLDVKCTDDQTRHVTTRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 L SS+ VVPV A+ + + I+IVKLRKGQEL+LRA A+KG Sbjct: 120 LISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQELKLRAFAKKG 168 [29][TOP] >UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus salmonis RepID=C1BV58_9MAXI Length = 279 Score = 168 bits (426), Expect = 2e-40 Identities = 93/170 (54%), Positives = 120/170 (70%), Gaps = 2/170 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P + I EL +D +KF L DTD SVANA+RRVMI+E P +AID V++E NS+VL+DE Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLG+IPLTS+ A+ M++SRDC D C C+VEF L VKC ++T +VTS D Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTD---FCRECAVEFTLDVKCHEETTRNVTSAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVE-TSDGRGIIIVKLRKGQELRLRAIARKG 570 L SSD V+PV + E ++ I+IVKLRKGQEL++RA A+KG Sbjct: 120 LKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRAYAKKG 169 [30][TOP] >UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa n=1 Tax=Monodelphis domestica RepID=UPI00005EAD58 Length = 275 Score = 167 bits (424), Expect = 4e-40 Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [31][TOP] >UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori RepID=Q1HQ43_BOMMO Length = 275 Score = 167 bits (424), Expect = 4e-40 Identities = 90/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL D+ +KF + DT+ SVAN++RRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SSD VVPV D + + I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFG 170 [32][TOP] >UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius RepID=C1BXW0_ESOLU Length = 275 Score = 167 bits (423), Expect = 5e-40 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170 [33][TOP] >UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar RepID=B5XBM8_SALSA Length = 275 Score = 167 bits (423), Expect = 5e-40 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170 [34][TOP] >UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes scapularis RepID=B7QL55_IXOSC Length = 274 Score = 167 bits (423), Expect = 5e-40 Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL D+ +KF + DTD SVAN+LRRV I+EV T+AID V++E NS+VL+DE Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + M++SRDC D C CSVEF + VKC+ + T VT+ D Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCAD---FCTECSVEFTIDVKCLDEQTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SSD VVPV D ++ E + I+IVKLRKGQE++ RA A+KG G Sbjct: 120 LKSSDPRVVPVTSRHKDDTN-EYGETDDILIVKLRKGQEVKARAYAKKGFG 169 [35][TOP] >UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI Length = 273 Score = 167 bits (422), Expect = 7e-40 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL D +KF++ DTD SVAN+LRRV I+E PT+AID V+++ NS+VL+DE Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIA R+GLIPLTS+ + +++SRDC D C CSVEF+L VKC + T VT+ D Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSD---FCHDCSVEFNLHVKCSEEMTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S++ VVPV DS E + I+I+KLRKGQEL++RA A+KG G Sbjct: 120 LVSNNPRVVPVTSRNQDSDINEYGEKDDILIIKLRKGQELKIRAFAKKGFG 170 [36][TOP] >UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186DA34 Length = 275 Score = 166 bits (421), Expect = 9e-40 Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I +L D+ +KF++ DT+ SVAN++RRV I+E PT+AID V++E NS+VL DE Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FI+HR+GLIPLTS+ + ++++RDC D C CSVEF L VKC D T VT+ D Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLD---FCPECSVEFTLDVKCTDDHTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SSD V+PV + + E + I+IVKLRKGQEL+LRA A+KG G Sbjct: 120 LKSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQELKLRAYAKKGFG 170 [37][TOP] >UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1 Tax=Tribolium castaneum RepID=UPI0000D5785C Length = 274 Score = 166 bits (421), Expect = 9e-40 Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I +L DD +KF + DTD SVAN++RRV+I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + +++ RDC D C CSVEF L VKC D T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTD---FCHECSVEFTLDVKCTDDHTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SSD V+P D S E D I+I+KLRKGQEL+++A A+KG G Sbjct: 120 LKSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQELKVKAYAKKGFG 170 [38][TOP] >UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE Length = 274 Score = 166 bits (421), Expect = 9e-40 Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 1/169 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + T S+AN LRR+ I+E PT+AID V+IE N+SVL+DE Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGL+PLTS+ + M FSRDC D C+ CS+EF L VKC DST VT++D Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 L S++ VPV + S E + I+IVKLRKGQEL+LRA A+KG Sbjct: 120 LISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQELKLRAFAKKG 168 [39][TOP] >UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus RepID=RPB3_BOVIN Length = 275 Score = 166 bits (421), Expect = 9e-40 Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [40][TOP] >UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar RepID=B5X5T8_SALSA Length = 275 Score = 166 bits (419), Expect = 2e-39 Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIPLTS+ + M++SRDC D C CSVE L +C D T VTS+D Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDARCTEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170 [41][TOP] >UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium discoideum RepID=RPB3_DICDI Length = 302 Score = 166 bits (419), Expect = 2e-39 Identities = 91/168 (54%), Positives = 115/168 (68%) Frame = +1 Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252 R P ++I E+K+D + F L +TD SVANALRRVMI+EVPT+ IDLVE E N+SVL DEFI Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69 Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432 AHRLGLIPL S+ ++RDC D +C+ CSVE L VKC + DVTS DL S Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126 Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 + V+PV S+S + I IVKLR+GQE++LRAIA+KG+G Sbjct: 127 QNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVG 169 [42][TOP] >UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus RepID=UPI0000DC0B4D Length = 330 Score = 165 bits (417), Expect = 3e-39 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [43][TOP] >UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus musculus RepID=UPI00016D3816 Length = 302 Score = 165 bits (417), Expect = 3e-39 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [44][TOP] >UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus RepID=Q9DB22_MOUSE Length = 275 Score = 165 bits (417), Expect = 3e-39 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [45][TOP] >UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae RepID=Q99M46_MOUSE Length = 275 Score = 165 bits (417), Expect = 3e-39 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [46][TOP] >UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus RepID=Q3UUX3_MOUSE Length = 332 Score = 165 bits (417), Expect = 3e-39 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [47][TOP] >UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE Length = 276 Score = 164 bits (415), Expect = 5e-39 Identities = 87/171 (50%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL ++ +KF++ DT+ SVAN++RRV I+E PT+AID V+IE NS+VL+DE Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+G+IPL S+ + ++++RDC D C C VEF L VKC ++T VT+ D Sbjct: 63 FLAHRIGMIPLISDEVVDRIQYTRDCQCMD---FCPECCVEFTLDVKCSDETTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ VVPV D + E + I+IVKLRKGQEL+LRA A+KG G Sbjct: 120 LKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQELKLRAYAKKGFG 170 [48][TOP] >UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160 Length = 257 Score = 164 bits (415), Expect = 5e-39 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [49][TOP] >UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33 kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B7Z6D1_HUMAN Length = 424 Score = 164 bits (415), Expect = 5e-39 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [50][TOP] >UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens RepID=RPB3_HUMAN Length = 275 Score = 164 bits (415), Expect = 5e-39 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [51][TOP] >UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide C isoform 2 n=1 Tax=Ciona intestinalis RepID=UPI00006A469F Length = 277 Score = 163 bits (412), Expect = 1e-38 Identities = 86/171 (50%), Positives = 117/171 (68%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 +A P V I EL +D +KF + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F++HR+GLIPLTS+ + +++SRDC D C+ CSVEF+L VKC + T VT++D Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMC---DDFCQDCSVEFYLDVKCTGEGTRQVTTRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S + VVP+ + SS + I+I KLRKGQ L+ +A A+KG G Sbjct: 120 LISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAFAKKGFG 170 [52][TOP] >UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II (DNA directed) polypeptide C, 33kDa(POLR2C), transcript variant gamma, n=1 Tax=Macaca fascicularis RepID=Q4R533_MACFA Length = 251 Score = 162 bits (410), Expect = 2e-38 Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L + V+PV D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 120 LIPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [53][TOP] >UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti RepID=Q16XU4_AEDAE Length = 275 Score = 162 bits (409), Expect = 2e-38 Identities = 91/172 (52%), Positives = 115/172 (66%), Gaps = 2/172 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL D+ +KF + DTD SV N+LRRV I+E PT+AID V++E N++VL DE Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + M++SRDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLD---FCTECSVEFTLDVKCNDEHTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 L SSD V+PV D E +G I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRAYAKKGFG 171 [54][TOP] >UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA Length = 273 Score = 161 bits (407), Expect = 4e-38 Identities = 90/172 (52%), Positives = 116/172 (67%), Gaps = 2/172 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I EL D+ +KF + DT+ SVAN+LRRV I+E PT+AID V++E N++VL DE Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + M++SRDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLD---FCNECSVEFTLDVKCNEEHTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 L SSD V+PV D E +G I+I+KLRKGQEL+L+A A+KG G Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFG 171 [55][TOP] >UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA, isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D Length = 276 Score = 160 bits (406), Expect = 5e-38 Identities = 84/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I +L ++ +KF++ DT+ SVAN++RRV I+E PT+AID +++E NS+VL+DE Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+G+IPL S+ + ++++RDC D C CSVEF L VKC D T VT+ D Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMD---FCPECSVEFTLDVKCTEDQTRHVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 SSD V+PV + + E + I+IVKLRKGQEL+LRA A+KG G Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFG 170 [56][TOP] >UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS Length = 275 Score = 160 bits (404), Expect = 9e-38 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L +S+ V+PV + D+ E+SD I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKTSNPKVLPVTSRNQGEEDNEYGESSD--EILIIKLRKGQELKLRAYAKKGFG 171 [57][TOP] >UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila melanogaster RepID=O97183_DROME Length = 275 Score = 159 bits (403), Expect = 1e-37 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171 [58][TOP] >UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI Length = 275 Score = 159 bits (403), Expect = 1e-37 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171 [59][TOP] >UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA Length = 275 Score = 159 bits (403), Expect = 1e-37 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171 [60][TOP] >UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RV95_TRIAD Length = 274 Score = 159 bits (403), Expect = 1e-37 Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA PRV I +L ++ +KF L +TD SVAN+LRR+ I+ VPT+AID V+ N+SVL+DE Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLT + + +++SRDC+ + C CSVEF L V+C D T VT++D Sbjct: 63 FIAHRLGLIPLTCDEVIDRLQYSRDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SSD VVPV + +V I+I KLR+GQE++++A A+KG+G Sbjct: 120 LISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLG 170 [61][TOP] >UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR Length = 275 Score = 159 bits (402), Expect = 1e-37 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESTD--EILIIKLRKGQELKLRAYAKKGFG 171 [62][TOP] >UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE Length = 275 Score = 159 bits (402), Expect = 1e-37 Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPVDF---SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V+PV D+ E++D I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSNAKVLPVTSRHQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171 [63][TOP] >UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI Length = 275 Score = 159 bits (401), Expect = 2e-37 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119 Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171 [64][TOP] >UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1 Tax=Brugia malayi RepID=A8PAX3_BRUMA Length = 275 Score = 158 bits (400), Expect = 3e-37 Identities = 85/171 (49%), Positives = 116/171 (67%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V I L D+ ++F L DTD SVAN+LRR+ ++EVPT+AID V+IE NSSVL+DE Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + M+FSRDC + C++C+VE LRV+C + VT+ D Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L +S+ V P + + E + I+IVKLRKGQ++ ++ IA+KG G Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFG 170 [65][TOP] >UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus RepID=RPB3_MOUSE Length = 275 Score = 158 bits (400), Expect = 3e-37 Identities = 88/171 (51%), Positives = 117/171 (68%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L S+ V+PV D+ + + I+IVKLRKGQELRLRA +K G Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSG 170 [66][TOP] >UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2GNN7_CHAGB Length = 338 Score = 152 bits (385), Expect = 1e-35 Identities = 83/165 (50%), Positives = 108/165 (65%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P VKI + +KFEL + D + AN+LRRVM+ E+PT+AIDLVEIE NSSVL DEFIAH Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL ++ G+ F+RDCD DG CE+CSV L KC D + V ++DL + Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTG 132 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + V + V S+G G +I+KLR GQE++L IA+KGI Sbjct: 133 ERINQV----LGTPVVSDSEGLGALILKLRPGQEIKLECIAKKGI 173 [67][TOP] >UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1 Tax=Neurospora crassa RepID=Q9P5U3_NEUCR Length = 337 Score = 152 bits (383), Expect = 2e-35 Identities = 83/165 (50%), Positives = 110/165 (66%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P VKI + + +KFEL +T+ S AN+LRRVM++E+PT+AIDLVEIE NSSVL DEFIAH Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL +E + +SRDCD D CE+CSV +L KC D + V ++DL Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V V S + +G+G +I+KLR GQE++L+ IA+KGI Sbjct: 133 DRVNQV----LGSPIINDPEGQGPLILKLRHGQEIKLQCIAKKGI 173 [68][TOP] >UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1 Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA Length = 266 Score = 150 bits (379), Expect = 7e-35 Identities = 87/171 (50%), Positives = 112/171 (65%), Gaps = 1/171 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V + ++ +KF L +TD SVANA+RRV I+EVPT+AID V+IE N+++LNDE Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIA R+GLIPLT + + M + R+C + CE CSVE L V C TD+ VT D Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCRE---FCEQCSVELTLDVCCTTDAPRHVTGAD 119 Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L SS+ V PV AD SS + I+IVK+RKGQ L+LRAIA+KG G Sbjct: 120 LISSNRDVQPVPSRDADESSYVGQE--SILIVKMRKGQRLKLRAIAKKGFG 168 [69][TOP] >UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q93338_CAEEL Length = 282 Score = 150 bits (378), Expect = 9e-35 Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 7/177 (3%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62 Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIP S+ M+++RDC+ + C+ CS+ F L++KC ++TL VT++ Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAE---FCDECSIPFILQMKCKDEATLAVTTEH 119 Query: 424 L---YSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L ++ D TV P A S+ E + I+IVKLRKGQEL L+A +KG G Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFG 176 [70][TOP] >UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis RepID=A3GF98_PICST Length = 315 Score = 147 bits (370), Expect = 8e-34 Identities = 83/165 (50%), Positives = 106/165 (64%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V IRE + D++ F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGL+PL SE + +SRDC D C CSV L KC TDST++V + DL Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDLAKFH 125 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + S V RG +I KLRK QELRL IA+KGI Sbjct: 126 NG------SRLGDPVVRDVQKRGPLICKLRKHQELRLTCIAKKGI 164 [71][TOP] >UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16 RepID=UPI0000123F31 Length = 399 Score = 146 bits (369), Expect = 1e-33 Identities = 84/176 (47%), Positives = 114/176 (64%), Gaps = 6/176 (3%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62 Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIP S+ M+++R+C+ + C+ CS+ F L+ KC ++TL VT+ D Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAE---FCDECSIPFILQTKCTDEATLAVTTAD 119 Query: 424 L--YSSDHTVVPVDFSAADSSSV---ETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L + TV P A E I+IVKLRKGQEL L+A A+KG G Sbjct: 120 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFG 175 [72][TOP] >UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp. RCC299 RepID=C1EBY2_9CHLO Length = 331 Score = 146 bits (369), Expect = 1e-33 Identities = 90/193 (46%), Positives = 116/193 (60%), Gaps = 19/193 (9%) Frame = +1 Query: 55 EGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSV 234 +G R P + ++E+ +D +KF L TD S+ANALRRV+I+EVPT+AIDLVE+ NSS Sbjct: 5 DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64 Query: 235 LNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVT 414 L DEFIAHRLGLIPL S +A M F D GD + V LRVKC++D T DVT Sbjct: 65 LCDEFIAHRLGLIPLVSHKAADMEFPYD---YAGDDE-TVTDVPIELRVKCVSDQTEDVT 120 Query: 415 SKDL-----YSSDHTVVPVDF--------------SAADSSSVETSDGRGIIIVKLRKGQ 537 S DL Y+ TV PV + + AD S + D I+I+KLRK Q Sbjct: 121 SNDLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQAD-GDKHPILILKLRKNQ 179 Query: 538 ELRLRAIARKGIG 576 E+ +R +ARKG+G Sbjct: 180 EINMRCVARKGVG 192 [73][TOP] >UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XY52_CLAL4 Length = 307 Score = 146 bits (368), Expect = 1e-33 Identities = 87/174 (50%), Positives = 108/174 (62%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 ME S PRV IR+ + D++ F LR D SVAN+LRR M+SEVPT+AIDLVEI+VN+S Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VL DE ++HRLGLIPL SE + +SRDC D C CSV+ L KC +DST++V Sbjct: 61 VLADELLSHRLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNV 117 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 S DL + S + RG +I KLRK QELRL IA+KGI Sbjct: 118 YSSDLAKFHNG------SKLGDPVIRDPAHRGPLICKLRKHQELRLTCIAKKGI 165 [74][TOP] >UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA Length = 311 Score = 144 bits (363), Expect = 5e-33 Identities = 83/165 (50%), Positives = 106/165 (64%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 PRV IR +++ F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL SE + +SRDC D C CSV+ L KC TDST+ V S DL Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDLAKFH 127 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + D A D+ +G +I KLRK QELR+ IA+KGI Sbjct: 128 NGSKLGDPVARDNHR------KGPLICKLRKHQELRITCIAKKGI 166 [75][TOP] >UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EJ53_SCLS1 Length = 335 Score = 144 bits (363), Expect = 5e-33 Identities = 83/166 (50%), Positives = 106/166 (63%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKI E ++ FEL + D S AN+LRR ++SEVPT+AID V+IE N+SVL DEFIAH Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S+ + ++RDCD DG CE CSV L +C D + V ++DL Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKVYARDL---- 127 Query: 439 HTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573 V P + + V T DG G +I KLRKGQELR++ IA KGI Sbjct: 128 -VVDPQRANKWVGNPVITDPDGLGPVIAKLRKGQELRMKCIALKGI 172 [76][TOP] >UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01 Length = 246 Score = 144 bits (362), Expect = 6e-33 Identities = 81/144 (56%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Frame = +1 Query: 148 VANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCD 324 VAN++RR +++EVPT+AID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RDC Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60 Query: 325 ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGR 504 + C CSVE L VKC D T VTS+DL SS+ VVPV +SS D Sbjct: 61 C---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVD-- 115 Query: 505 GIIIVKLRKGQELRLRAIARKGIG 576 I+IVKLRKGQELRLRA A+KG G Sbjct: 116 DILIVKLRKGQELRLRAYAKKGFG 139 [77][TOP] >UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida albicans RepID=Q5A462_CANAL Length = 318 Score = 143 bits (361), Expect = 8e-33 Identities = 79/165 (47%), Positives = 104/165 (63%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V IRE + D++ F L++ D +VAN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL SE + +SRDC D C CSV L C T+ST++V + DL Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 H + S + RG +I KLRK QEL L IA+KGI Sbjct: 126 H-----NGSKLGDPVIRDPQARGPLICKLRKHQELSLTCIAKKGI 165 [78][TOP] >UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida dubliniensis CD36 RepID=B9WGL5_CANDC Length = 313 Score = 143 bits (361), Expect = 8e-33 Identities = 79/165 (47%), Positives = 104/165 (63%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V IRE + D++ F L++ D +VAN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL SE + +SRDC D C CSV L C T+ST++V + DL Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 H + S + RG +I KLRK QEL L IA+KGI Sbjct: 126 H-----NGSKLGDPVIRDPQARGPLICKLRKHQELSLTCIAKKGI 165 [79][TOP] >UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6S2E5_BOTFB Length = 336 Score = 142 bits (359), Expect = 1e-32 Identities = 82/166 (49%), Positives = 106/166 (63%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKI E ++ FEL + D S AN+LRR ++SEVPT+AID V+IE N+SVL DEFIAH Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S+ + ++RDCD +G CE CSV L +C D + V ++DL Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDL---- 127 Query: 439 HTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573 V P + + V T DG G +I KLRKGQELR++ IA KGI Sbjct: 128 -VVDPQRANKWVGNPVITDPDGLGPVIAKLRKGQELRMKCIALKGI 172 [80][TOP] >UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae RepID=A8XFM5_CAEBR Length = 280 Score = 142 bits (357), Expect = 2e-32 Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 6/176 (3%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62 Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHR+GLIP S+ M+++R C+ C+ CS+ F L+ KC ++TL VT+ D Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAVTTAD 118 Query: 424 L--YSSDHTVVPVDFSAADSSSV---ETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L + TV P A E I+IVKLRKGQEL L+A A+KG G Sbjct: 119 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFG 174 [81][TOP] >UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R RepID=B8PBS2_POSPM Length = 265 Score = 142 bits (357), Expect = 2e-32 Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V+IREL+ D++ F + + D ++AN+LRRVM++++PTVAID+VEIE N++VL DEFIAH Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLG+IPL S GMR++RDC C++C+VE L V C +DVTS L S Sbjct: 64 RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 D + + S ++I K+RKGQELRLR IA+KG+ Sbjct: 121 DELAKRPENFGHPVGKFDPSVS-PVLIAKIRKGQELRLRCIAKKGV 165 [82][TOP] >UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE Length = 275 Score = 141 bits (355), Expect = 4e-32 Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 2/171 (1%) Frame = +1 Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249 +R P + +R L+ DYM FEL++TD S ANALRR M++EVPT+AIDLVE+E N++VLNDEF Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69 Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL- 426 +AHRLGLIPL S A+ + + G + F L V C + +DVTS DL Sbjct: 70 LAHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLV 124 Query: 427 -YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 D VVPV++ +A + I+I KLR+GQ L+L A ARKGIG Sbjct: 125 PLEPDAGVVPVNYHSATE--------KPIVICKLRRGQHLKLVARARKGIG 167 [83][TOP] >UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina RepID=B2B158_PODAN Length = 334 Score = 141 bits (355), Expect = 4e-32 Identities = 82/168 (48%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P VKI + +KFEL++ D S AN+LRRVM++E+PT+AIDLVEIE NSSVL DEFIAH Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL +E + +SRDCD + CE CSV+ L KC + V+++DL Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL---- 128 Query: 439 HTVVPVDFSAADSSS---VETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VPV S + DG G +I+KLR QE++L IA+KGI Sbjct: 129 ---VPVGERINQSLGTPVINDKDGTGPLILKLRPEQEIKLECIAKKGI 173 [84][TOP] >UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii RepID=A5DQ44_PICGU Length = 305 Score = 141 bits (355), Expect = 4e-32 Identities = 80/164 (48%), Positives = 105/164 (64%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV IR+ + D++ F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 LG+IPL SE + +SRDC D C CSV+ L KC +DST+ V + DL + Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDLAKFHN 125 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 S V RG +I KLRK QELRL IA+KGI Sbjct: 126 G------SKLGDPVVRDHHQRGPLICKLRKHQELRLTCIAKKGI 163 [85][TOP] >UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YWI1_NECH7 Length = 335 Score = 140 bits (353), Expect = 7e-32 Identities = 79/165 (47%), Positives = 104/165 (63%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKI ++ FEL T+ + ANALRRV+ +EVPT+AIDLVEIE+NSSVL DEFIAH Sbjct: 15 PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S+ + SRDCD + CE CSV +L KC +D + V ++DL Sbjct: 75 RLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDLVVDG 131 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 ++ S + +G G +I KLRK QEL++ IA+KGI Sbjct: 132 RHA-----NSVGSPVITDPEGYGCLIAKLRKDQELKITCIAKKGI 171 [86][TOP] >UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1 RepID=UPI000023DAEE Length = 337 Score = 139 bits (350), Expect = 2e-31 Identities = 80/165 (48%), Positives = 104/165 (63%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKI ++ FEL T+ S ANA+RRV+ +EVPT+AIDLVEIE NSSVL DEFIAH Sbjct: 15 PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S+ + +SRDCD + CE CSV L KC +D + V ++DL Sbjct: 75 RLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDL---- 127 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V ++ S + +G G +I KLRK QEL++ IA+KGI Sbjct: 128 -VVDGRHGNSVGSPMIMDPEGYGCLIAKLRKHQELKISCIAKKGI 171 [87][TOP] >UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MDV1_CANTT Length = 327 Score = 139 bits (350), Expect = 2e-31 Identities = 79/165 (47%), Positives = 101/165 (61%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V IR + D++ F LR+ D SVAN++RR M++EVPT++IDLVEIE N+SVL DEF++H Sbjct: 9 PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL SE + +SRDC D C CSV L C ++T++V + DL + Sbjct: 69 RLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTT 125 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 HT S RG II KLRK QEL L IA+KGI Sbjct: 126 HT-----GSKLGDPVFRDPRNRGPIICKLRKDQELALTCIAKKGI 165 [88][TOP] >UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL Length = 336 Score = 139 bits (350), Expect = 2e-31 Identities = 78/165 (47%), Positives = 106/165 (64%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V +R+ + D + F L+ D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S+ + +SRDC AC D C CSV L KC +DST++V + DL Sbjct: 67 RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDL---- 119 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + ++ + RG +I KLR+ QE+RL IA+KGI Sbjct: 120 ---LKLNTELLGKPIIRDPQNRGPLICKLRRHQEIRLTCIAKKGI 161 [89][TOP] >UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC 6260 RepID=UPI000151B3AC Length = 305 Score = 139 bits (349), Expect = 2e-31 Identities = 79/164 (48%), Positives = 104/164 (63%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV IR+ + D++ F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 LG+IPL SE + +SRDC D C C V+ L KC +DST+ V + DL + Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDLAKFHN 125 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 S V RG +I KLRK QELRL IA+KGI Sbjct: 126 G------SKLGDPVVRDHHQRGPLICKLRKHQELRLTCIAKKGI 163 [90][TOP] >UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RSP9_OSTLU Length = 318 Score = 137 bits (346), Expect = 5e-31 Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 4/168 (2%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 V + L+D+ + F+L+ D S+ANALRR+MI++VPTV+IDLVE+ NSSVL DEF+AHRL Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70 Query: 265 GLIPLTSERAMGM----RFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432 GLIPL S +A + ++ D D V L V+C +D T DVTS DL S Sbjct: 71 GLIPLDSTKASELVKPYEYTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLIS 122 Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 D V PV F S ++ GI+I KLRK Q+L L+ IARKG G Sbjct: 123 HDERVKPVSFGGTGGGSAKSG---GILIAKLRKNQQLSLKCIARKGTG 167 [91][TOP] >UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G229_PHATR Length = 320 Score = 137 bits (344), Expect = 8e-31 Identities = 83/181 (45%), Positives = 109/181 (60%), Gaps = 12/181 (6%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 Y R PRV+I ++ +KF L ++D SVAN LRR+MI+EVPT+AIDLVE NS+VLNDE Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62 Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDA------CDGDGQCEYCSVEFHLRVKCMTD---- 396 +IAHR+GLIP+ + A ++ S DA C C CSVEF L + Sbjct: 63 YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEED 122 Query: 397 --STLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 + L VTSKDL S++ V P F + D + + G+ IVKL GQ L+L+AIAR G Sbjct: 123 VLAPLTVTSKDLVSNNELVQPAHFLSQDEQ--DEAQDEGVAIVKLGPGQRLKLKAIARMG 180 Query: 571 I 573 I Sbjct: 181 I 181 [92][TOP] >UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K2N9_SCHJY Length = 308 Score = 136 bits (342), Expect = 1e-30 Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 7/172 (4%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V I+ + + ++F L +TD S+AN+LRRV++ E+PTVAIDLVEI VN+SV+ DEF+AH Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64 Query: 259 RLGLIPLTSER-----AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 RLG+IPL S +G+ ++R+CD D C CSVE L KC D T++V ++D Sbjct: 65 RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121 Query: 424 LYSSDHTVV--PVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 L ++ + PV AD+ S G +I+KLRK QE+ LR IA+KGI Sbjct: 122 LVVDSNSTLGQPV---LADARS------HGPLILKLRKEQEVSLRCIAKKGI 164 [93][TOP] >UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194E98D Length = 129 Score = 135 bits (341), Expect = 2e-30 Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 1/130 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVP 453 L S++ V+P Sbjct: 120 LISNNPRVIP 129 [94][TOP] >UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces cerevisiae RepID=RPB3_YEAST Length = 318 Score = 135 bits (341), Expect = 2e-30 Identities = 78/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKIRE D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S + +SRDC D C+ CSV L+ ++ST +V SKDL Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDL---- 118 Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V+ + + ++ +G G++I KLRKGQEL+L +A+KGI Sbjct: 119 --VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGI 163 [95][TOP] >UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MVZ5_9CHLO Length = 333 Score = 135 bits (340), Expect = 2e-30 Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 18/186 (9%) Frame = +1 Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252 R P + ++EL + ++F L TD SVANALRRV+I+EVPT+AIDLV++ N+S L DEFI Sbjct: 10 RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69 Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVK-CMTDSTLDVTSKDLY 429 AHRLGLIPL SE+A+ M F D GD + V F L C + T+DVTS DL Sbjct: 70 AHRLGLIPLLSEKAVEMEFPYD---YAGDDE-SVTDVHFELNTGICASAETVDVTSNDLV 125 Query: 430 SSDHTVVPVDF-----------------SAADSSSVETSDGRGIIIVKLRKGQELRLRAI 558 D V PV++ AA + D G++IVKLR+GQ++ +R + Sbjct: 126 CYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMRCV 185 Query: 559 ARKGIG 576 ARKG+G Sbjct: 186 ARKGVG 191 [96][TOP] >UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DHI5_LACTC Length = 328 Score = 135 bits (340), Expect = 2e-30 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKIRE D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S + + RDC D C+ CSV L+ ++ST +V +KDL Sbjct: 66 RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDL---- 118 Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V+ + + ++ DG G++I KLRKGQEL+L+ +A+KGI Sbjct: 119 --VIVSNLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCVAKKGI 163 [97][TOP] >UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1 Tax=Ostreococcus tauri RepID=Q01F02_OSTTA Length = 301 Score = 134 bits (338), Expect = 4e-30 Identities = 78/169 (46%), Positives = 104/169 (61%), Gaps = 5/169 (2%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 V + L+D + F L+ D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRL Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70 Query: 265 GLIPLTSERAMGM-----RFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429 GLIPL+S++ + D A D V L V+C+T+ +DVTS+D+ Sbjct: 71 GLIPLSSKKVSELFKPYEYMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMV 121 Query: 430 SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 S D V P+ F S + + GI+IVKLR Q+L L+ IARKG G Sbjct: 122 SYDERVKPITFQGTVSDAAKPG---GILIVKLRNKQQLLLKCIARKGTG 167 [98][TOP] >UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1 Tax=Candida glabrata RepID=Q6FPN4_CANGA Length = 312 Score = 134 bits (336), Expect = 7e-30 Identities = 77/165 (46%), Positives = 106/165 (64%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKIRE D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S + +SRDC D C+ CSV L+ ++ST +V +KDL Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLL--- 119 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V + ++ +G G++I KLRKGQEL+L IA+KGI Sbjct: 120 -IVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIAKKGI 163 [99][TOP] >UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P8L3_USTMA Length = 329 Score = 134 bits (336), Expect = 7e-30 Identities = 79/178 (44%), Positives = 109/178 (61%), Gaps = 14/178 (7%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P++ +R+L D+ F L + D S AN+LRR+MI+++PTVAID+VEI N++VL DE +AH Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71 Query: 259 RLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLG++PL S + A + RDC DG C+ CSVE LR +C T L+VTS+DL S Sbjct: 72 RLGMVPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128 Query: 436 D----HTVVPVDFSAADSSSVETSDGR---------GIIIVKLRKGQELRLRAIARKG 570 D T+ D A ++ GR I++VK+ KGQEL +R IARKG Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKG 186 [100][TOP] >UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D0L9_LACBS Length = 304 Score = 134 bits (336), Expect = 7e-30 Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 18/183 (9%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V+IRELK D + F L + D + AN+LRRVM++++PTVAID+VEIE+N++VL DEFIAH Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLG++PL S +R +RDC G C +C++ L V C D+T++VTS L Sbjct: 69 RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL--- 122 Query: 436 DHTVVPVDFSAADSS-SVETSDGRG----------------IIIVKLRKGQELRLRAIAR 564 V+P D+S S E RG I+I K+RKGQEL+++ +A+ Sbjct: 123 --DVIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVKCVAK 180 Query: 565 KGI 573 KGI Sbjct: 181 KGI 183 [101][TOP] >UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO Length = 311 Score = 133 bits (334), Expect = 1e-29 Identities = 76/165 (46%), Positives = 105/165 (63%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKIRE D + F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGL+PL S+ + + RDC D C+ CSV L ++ST +V +KDL Sbjct: 66 RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDL---- 118 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V + ++ + G++I KLRKGQELRL+ +A+KGI Sbjct: 119 QIVSDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVAKKGI 163 [102][TOP] >UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA Length = 307 Score = 133 bits (334), Expect = 1e-29 Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKIRE D + F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S + + RDC D C+ CSVE L ++ST +V +KDL Sbjct: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDLQ--- 119 Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + D + ++ + G++I KLRKGQE+R++ IA+KGI Sbjct: 120 ---ITSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGI 163 [103][TOP] >UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO Length = 297 Score = 131 bits (330), Expect = 3e-29 Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 5/168 (2%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 + IR + + + F L +T +VAN+LRRV+++E+PTVAIDLVEI VN+SV+ DEF+AHRL Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66 Query: 265 GLIPLTSER-----AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429 G+IPL S +G+ ++R+CD D C CSVE L KC + T+++ ++DL Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123 Query: 430 SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 S ++ + A S RG +I KLRK QE+ LR IA+KGI Sbjct: 124 VSSNSSLGHPILADPKS-------RGPLICKLRKEQEISLRCIAKKGI 164 [104][TOP] >UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33 kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens RepID=B7Z377_HUMAN Length = 155 Score = 131 bits (329), Expect = 4e-29 Identities = 70/131 (53%), Positives = 93/131 (70%), Gaps = 1/131 (0%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119 Query: 424 LYSSDHTVVPV 456 L S+ V+PV Sbjct: 120 LISNSPRVIPV 130 [105][TOP] >UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N5W0_COPC7 Length = 366 Score = 131 bits (329), Expect = 4e-29 Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 22/187 (11%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P V++RE+K D + F L + D + AN+ RRV+++++PTVAIDLVE E N+SVL DE+IAH Sbjct: 8 PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLG IPL S +R++RDC QC YC+V+ L V C D+T++VTS L Sbjct: 68 RLGQIPLISTNCDEAIRYTRDCTCLS---QCSYCAVQLRLDVACNDDTTMEVTSNHL--- 121 Query: 436 DHTVVPVDFSAADSSSVETSDGRG---------------------IIIVKLRKGQELRLR 552 VVP+D D E G ++I K+RKGQELR++ Sbjct: 122 --EVVPLD----DYMQEEIQHGEEKAKRTQWFGHPVGKNEPGTPPVLICKIRKGQELRVK 175 Query: 553 AIARKGI 573 IA+KGI Sbjct: 176 CIAKKGI 182 [106][TOP] >UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QC29_PENMQ Length = 352 Score = 130 bits (328), Expect = 6e-29 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SVL DEF+AH Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYS 432 RLGLIPL S+ M ++RDC + C CSV L +C D + V S+DL Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL-- 126 Query: 433 SDHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + +G+G +I KL KGQEL+L IARKGI Sbjct: 127 ----VVTGDRANEWVGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 171 [107][TOP] >UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN Length = 331 Score = 130 bits (326), Expect = 1e-28 Identities = 74/171 (43%), Positives = 105/171 (61%), Gaps = 6/171 (3%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L D + AN+LRR M++EVPTVAIDLVE+E N+SVL DEF+AH Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL--- 426 RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECED---HCARCSVTLQLHARCTGDDIMRVYARDLAVA 129 Query: 427 --YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 ++D PV + +G+G +I KLR+GQEL++ IA+KGI Sbjct: 130 GERANDWVGTPV---------ITDPEGKGPLICKLRRGQELKMTCIAKKGI 171 [108][TOP] >UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H5R6_PARBA Length = 352 Score = 130 bits (326), Expect = 1e-28 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + + F L D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ M +SRDCD +G C C V L V+C + + V ++DL Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDL--- 127 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 ++ D + S + ++G+G +I KL +GQEL++ IA+KGI Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172 [109][TOP] >UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1GI99_PARBD Length = 352 Score = 130 bits (326), Expect = 1e-28 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + + F L D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ M +SRDCD +G C C V L V+C + + V ++DL Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL--- 127 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 ++ D + S + ++G+G +I KL +GQEL++ IA+KGI Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172 [110][TOP] >UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SC71_PARBP Length = 283 Score = 130 bits (326), Expect = 1e-28 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + + F L D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ M +SRDCD +G C C V L V+C + + V ++DL Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL--- 127 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 ++ D + S + ++G+G +I KL +GQEL++ IA+KGI Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172 [111][TOP] >UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8M3N2_TALSN Length = 353 Score = 130 bits (326), Expect = 1e-28 Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SV+ DEF+AH Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYS 432 RLGLIPL S+ M ++RDC + C CSV L +C D + V S+DL Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL-- 126 Query: 433 SDHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + +G+G +I KL KGQEL+L IARKGI Sbjct: 127 ----VVTGDRANEWVGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 171 [112][TOP] >UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II subunit B3) (RNA polymerase II subunit 3) (DNA-directed RNA polymerase II subunit C) (DNA-directed RNA polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC Length = 275 Score = 129 bits (325), Expect = 1e-28 Identities = 76/172 (44%), Positives = 112/172 (65%), Gaps = 2/172 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS-K 420 FIAHR+GLIPLTS+ + +++SR +G C C+ +F + C+ + +T Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRGNSVTEG---CR-CANKFTGLLGCLPFPSFQITQVT 118 Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 L ++ + V + D+ + + I+IVKLRKGQELRLRA A+KG G Sbjct: 119 KLVNTTFFSLQVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170 [113][TOP] >UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732 RepID=C5DWL5_ZYGRC Length = 308 Score = 129 bits (325), Expect = 1e-28 Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 2/167 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+VKIRE + + F L + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPL S + + RDC D C+ CSV L+ ++ST +V +KDL Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDL---- 118 Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V+ + + ++ +G G++I KLRKGQEL L+ +A+KGI Sbjct: 119 --VIVSNLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLKCVAKKGI 163 [114][TOP] >UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest subunit (Fragment) n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B8BWN8_THAPS Length = 297 Score = 129 bits (324), Expect = 2e-28 Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 10/177 (5%) Frame = +1 Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252 R P+V+I + +++F L +TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+I Sbjct: 2 RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61 Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHL----------RVKCMTDST 402 AHRLGL+P+ R M ++C D +C C VEF L R D Sbjct: 62 AHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLA 115 Query: 403 LDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 L VTS+DL S++ V P F + + S GI IVKL GQ L+L+AIAR GI Sbjct: 116 LTVTSRDLISNNMLVSPAHF--LNEEEQDESHDEGISIVKLGPGQHLKLKAIARMGI 170 [115][TOP] >UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE Length = 276 Score = 129 bits (324), Expect = 2e-28 Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 2/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 PR+++ E D + F L+ D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AH Sbjct: 11 PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RLGLIPLTSE A + RDC C+ C++C V L V+ T+ VT+ DL S Sbjct: 71 RLGLIPLTSEAADKFYYPRDCTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTTDDLISQ- 127 Query: 439 HTVVPVDFSAAD--SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 DF A S+ E++ I+I KL KGQ ++L A A+KG G Sbjct: 128 ---AAGDFMAVKPISAREESNIRNPIVICKLAKGQRIQLTAFAKKGFG 172 [116][TOP] >UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate + (RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QC01_ASPNC Length = 338 Score = 129 bits (323), Expect = 2e-28 Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + + +G G +I KLR+GQEL++ IA+KGI Sbjct: 129 GERA----NEWVGNPVILDPEGNGPLICKLRRGQELKMTCIAKKGI 170 [117][TOP] >UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus RepID=A1C6Y7_ASPCL Length = 333 Score = 128 bits (322), Expect = 3e-28 Identities = 72/171 (42%), Positives = 108/171 (63%), Gaps = 6/171 (3%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + ++ F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY-- 429 RLGLIPL S+ + ++RDCD D +C CSV L +C D + V ++DL Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCED---RCARCSVTLTLHARCTGDEIMPVYARDLVVT 128 Query: 430 ---SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 +++ PV + +G+G +I KLR+GQEL++ IA+KG+ Sbjct: 129 GERANEWVGTPV---------LTDPEGKGSLICKLRRGQELKMTCIAKKGM 170 [118][TOP] >UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT Length = 348 Score = 128 bits (321), Expect = 4e-28 Identities = 72/168 (42%), Positives = 98/168 (58%) Frame = +1 Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252 R P ++I E +KF L +TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66 Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432 HRLGL+P+ S + F D C +C CSV++ L +KC + +VT D+YS Sbjct: 67 VHRLGLLPIDSRQIRDFNFK---DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYS 123 Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 + V + V + GI+I KL GQ L R A KGIG Sbjct: 124 T-LPVPNIPLPVPRKEDVTDPNNEGILIAKLGPGQSLTARMTATKGIG 170 [119][TOP] >UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis RepID=C5GT99_AJEDR Length = 346 Score = 128 bits (321), Expect = 4e-28 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F L D + AN+LRR +++EVPTVAID+VEIE N+SVL DEFIAH Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ M +SRDCD +G C C V L+ +C + + V ++DL Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDL--- 126 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + ++G+G +I KLR+GQE+++ +A+KGI Sbjct: 127 ---VVVGDRANEWVGNPVITDAEGKGPLICKLRRGQEIKMTCVAKKGI 171 [120][TOP] >UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NSH0_AJECG Length = 475 Score = 128 bits (321), Expect = 4e-28 Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F L D + AN+LRR +++E+PTVAID+VEIE N+SVL DEFI+H Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ M +SRDCD +G C C V L+ +C + + V ++DL Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL--- 126 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + ++G+G +I KLR+GQE+++ IA+KGI Sbjct: 127 ---VVVGDRANEWVGNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGI 171 [121][TOP] >UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR Length = 342 Score = 127 bits (319), Expect = 6e-28 Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + + +G G +I KLR+GQEL++ IA+KGI Sbjct: 129 GERA----NEWVGNPVITDPEGNGPLICKLRRGQELKMTCIAKKGI 170 [122][TOP] >UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2 Tax=Emericella nidulans RepID=C8V1J2_EMENI Length = 333 Score = 127 bits (319), Expect = 6e-28 Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + ++RDC+ D C CSV L +C +D + V ++DL + Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTSDEIMRVYARDLVIT 128 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + + DG G +I KLR+GQEL++ IA+KGI Sbjct: 129 GERA----NEWVGNPVITDPDGNGPLICKLRRGQELKMTCIAKKGI 170 [123][TOP] >UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357 RepID=B8NGG7_ASPFN Length = 338 Score = 127 bits (319), Expect = 6e-28 Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + + +G G +I KLR+GQEL++ IA+KGI Sbjct: 129 GERA----NEWVGNPVITDPEGNGPLICKLRRGQELKMTCIAKKGI 170 [124][TOP] >UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1DHL4_NEOFI Length = 336 Score = 127 bits (318), Expect = 8e-28 Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 128 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + +G+G +I KLR+GQEL++ +A+KGI Sbjct: 129 GERA----NEWVGDPVITDPEGKGPLICKLRRGQELKMTCVAKKGI 170 [125][TOP] >UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155CFD6 Length = 352 Score = 125 bits (313), Expect = 3e-27 Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 1/138 (0%) Frame = +1 Query: 166 RVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDG 342 R I P ++ID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++SRDC + Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EE 169 Query: 343 QCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVK 522 C CSVEF L V+C D T VTS+DL S+ V+PV + D+ + + I+IVK Sbjct: 170 FCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVK 229 Query: 523 LRKGQELRLRAIARKGIG 576 LRKGQELRLRA A+KG G Sbjct: 230 LRKGQELRLRAYAKKGFG 247 [126][TOP] >UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG Length = 304 Score = 124 bits (312), Expect = 4e-27 Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 1/169 (0%) Frame = +1 Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249 ++ P+V I +DD ++ L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61 Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429 I+HRLGLIPL SE M++SRDC D C+ CSV L + + + D+Y Sbjct: 62 ISHRLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSARHEGEE----GTTDVY 114 Query: 430 SSDHTVVPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGI 573 SS V + V D +GI++ KLR QEL +R IA+KGI Sbjct: 115 SSSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGI 163 [127][TOP] >UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4R7L3_MAGGR Length = 330 Score = 124 bits (311), Expect = 5e-27 Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 VKI ++ FEL + D S+AN++RRVM++E+PTVAID EI+ N+SVL DEFIAHRL Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GL+PL++ A + ++RDCD + CE CSV + KC ++ V +Y+ D Sbjct: 77 GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESEDPNYVMK--VYARDMV 131 Query: 445 VVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573 V + + + V T DG G+I+ KLR+ QE+ +R +A+KGI Sbjct: 132 VDGRRVNQSVGTPVITDPDGLGVILFKLRRNQEVHIRCVAKKGI 175 [128][TOP] >UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CSH3_CRYPV Length = 355 Score = 124 bits (310), Expect = 7e-27 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 3/171 (1%) Frame = +1 Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252 R P+ +I EL + ++F L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67 Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432 HR+GLIPL S F D C+ +C CSVE+ L V C +T +VT D+ Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124 Query: 433 -SDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576 + T+VP+ D S DG GI+I KL GQ + +R A KGIG Sbjct: 125 VATSTLVPMPVPKKDDS----VDGMNNGILIAKLGPGQRIAMRMTACKGIG 171 [129][TOP] >UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis RepID=Q5CNH1_CRYHO Length = 355 Score = 124 bits (310), Expect = 7e-27 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 3/171 (1%) Frame = +1 Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252 R P+ +I EL + ++F L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67 Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432 HR+GLIPL S F D C+ +C CSVE+ L V C +T +VT D+ Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124 Query: 433 -SDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576 + T+VP+ D S DG GI+I KL GQ + +R A KGIG Sbjct: 125 VATSTLVPMPVPKKDDS----VDGMNNGILIAKLGPGQRIAMRMTACKGIG 171 [130][TOP] >UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis RepID=Q1DX59_COCIM Length = 345 Score = 124 bits (310), Expect = 7e-27 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F L D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + M ++R+CD +G C C + L KC + + V ++DL Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDL--- 126 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + G+G II KLR+GQE+++ +KGI Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGI 171 [131][TOP] >UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1 Tax=Coccidioides posadasii C735 delta SOWgp RepID=C5P0B5_COCP7 Length = 345 Score = 124 bits (310), Expect = 7e-27 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F L D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + M ++R+CD +G C C + L KC + + V ++DL Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDL--- 126 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + G+G II KLR+GQE+++ +KGI Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGI 171 [132][TOP] >UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QC30_PENMQ Length = 370 Score = 124 bits (310), Expect = 7e-27 Identities = 75/155 (48%), Positives = 98/155 (63%), Gaps = 4/155 (2%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297 F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SVL DEF+AHRLGLIPL S+ Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103 Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYSSDHTVVPVDFSA-- 468 M ++RDC + C CSV L +C D + V S+DL VV D + Sbjct: 104 DMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL------VVTGDRANEW 154 Query: 469 ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + + +G+G +I KL KGQEL+L IARKGI Sbjct: 155 VGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 189 [133][TOP] >UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR Length = 334 Score = 123 bits (308), Expect = 1e-26 Identities = 68/163 (41%), Positives = 98/163 (60%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 V+ E F +++ + AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRL Sbjct: 12 VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GL+PL+S+ + +SRDCD +G C+ C+V L KC + V ++DL T Sbjct: 72 GLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVIESRT 128 Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 P D + S+G G IVKLR+GQ + +R IA+KGI Sbjct: 129 --PND--EVGKPVITDSEGTGSCIVKLRRGQAINMRCIAKKGI 167 [134][TOP] >UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii GT1 RepID=B9PNQ8_TOXGO Length = 484 Score = 122 bits (306), Expect = 2e-26 Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 10/183 (5%) Frame = +1 Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237 G S A P + ++E+ + +KF L + D S+AN LRRVMISEVP++AIDLV + N+SVL Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203 Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417 +DE+I+HRLGL+P+ S R DCD D C CSV++ L V C DS L VT Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259 Query: 418 KD----------LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 +D L S+ + ++ + GI IVKLRK Q + +R A K Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319 Query: 568 GIG 576 GIG Sbjct: 320 GIG 322 [135][TOP] >UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii RepID=B6KGB1_TOXGO Length = 484 Score = 122 bits (306), Expect = 2e-26 Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 10/183 (5%) Frame = +1 Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237 G S A P + ++E+ + +KF L + D S+AN LRRVMISEVP++AIDLV + N+SVL Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203 Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417 +DE+I+HRLGL+P+ S R DCD D C CSV++ L V C DS L VT Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259 Query: 418 KD----------LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 +D L S+ + ++ + GI IVKLRK Q + +R A K Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319 Query: 568 GIG 576 GIG Sbjct: 320 GIG 322 [136][TOP] >UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE Length = 345 Score = 122 bits (305), Expect = 3e-26 Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 3/168 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +R+++ + F L D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S+ + M ++RDCD +G C C + L KC + + V ++DL Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDL--- 126 Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 VV D + + + G+G II KLR+ QE+++ +KGI Sbjct: 127 ---VVIGDRANEWVGNPVINDPAGKGPIICKLRRDQEVKMTCTVKKGI 171 [137][TOP] >UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus RepID=B0XTA3_ASPFC Length = 392 Score = 121 bits (304), Expect = 3e-26 Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297 F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+ Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141 Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADS 477 + ++RDCD D C CSV L +C D + V ++DL S Sbjct: 142 DVEYTRDCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERA----NEWVGD 194 Query: 478 SSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + +G+G +I KLR+GQEL++ +A+KGI Sbjct: 195 PVITDPEGKGPLICKLRRGQELKMTCVAKKGI 226 [138][TOP] >UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L2P7_PLAKH Length = 334 Score = 121 bits (303), Expect = 4e-26 Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 3/172 (1%) Frame = +1 Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249 A+ V+I +L D M F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69 Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429 +AHRLGLIP+ S F C + C C++++ ++VKC S +DVT D+ Sbjct: 70 LAHRLGLIPIDSRNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIDVTHYDIE 126 Query: 430 SSDH---TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 S +H +PV F ++ +++ I IV L K Q L ++ IA KGIG Sbjct: 127 SVEHEPNVPMPVPFEDRNNKMAQSN---AIPIVTLSKNQTLHMKLIATKGIG 175 [139][TOP] >UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax RepID=A5K6U4_PLAVI Length = 333 Score = 120 bits (300), Expect = 1e-25 Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 1/170 (0%) Frame = +1 Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249 A+ V+I +L D M F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68 Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429 +AHRLGLIP+ S F C + C C++++ ++VKC S +++T D+ Sbjct: 69 LAHRLGLIPIDSTNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIEITHHDIE 125 Query: 430 SSDHTV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 S +H VP+ D ++ + ++ I IV L K Q L ++ IA KGIG Sbjct: 126 SVEHEPNVPMPVPLEDRNN-QMAESNAIPIVTLSKNQTLHMKLIATKGIG 174 [140][TOP] >UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RAE4_AJECN Length = 576 Score = 120 bits (300), Expect = 1e-25 Identities = 67/154 (43%), Positives = 98/154 (63%), Gaps = 3/154 (1%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297 F L D + AN+LRR +++E+PTVAID+VEIE N+SVL DEFI+HRLGLIPL S+ Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109 Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSA--A 471 M +SRDCD +G C C V L+ +C + + V ++DL V+ D + Sbjct: 110 DMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL------VIVGDRANEWV 160 Query: 472 DSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 + + ++G+G +I KLR+GQE+++ IA+KGI Sbjct: 161 GNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGI 194 [141][TOP] >UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2 n=1 Tax=Pan troglodytes RepID=UPI0000E242AB Length = 242 Score = 119 bits (299), Expect = 1e-25 Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 1/129 (0%) Frame = +1 Query: 193 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEF 369 +AID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++SRDC + C CSVEF Sbjct: 12 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEF 68 Query: 370 HLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRL 549 L V+C D T VTS+DL S+ V+PV D+ + + I+IVKLRKGQELRL Sbjct: 69 TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRL 128 Query: 550 RAIARKGIG 576 RA A+KG G Sbjct: 129 RAYAKKGFG 137 [142][TOP] >UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480 RepID=C5FPK3_NANOT Length = 359 Score = 119 bits (299), Expect = 1e-25 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297 F L D + AN+ RR +++E+PTVAID+VEIEVN+SVL DEFI+HRLGLIPL S+ Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96 Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADS 477 M +SRDCD +G C+ C + L KC ++ + V ++DL VV + Sbjct: 97 DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDL-----VVVGDRANEWVG 148 Query: 478 SSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573 + V T +G+G II KLR+GQE++ I +KGI Sbjct: 149 NPVLTDPEGKGPIICKLRRGQEVKFNCIVKKGI 181 [143][TOP] >UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI Length = 314 Score = 119 bits (298), Expect = 2e-25 Identities = 69/143 (48%), Positives = 91/143 (63%) Frame = +1 Query: 145 SVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSRDCD 324 ++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+ + +SRDC Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79 Query: 325 ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGR 504 C D C+ CSV L C D T+D+ S+DL HT + + Sbjct: 80 VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMV--HTT--PERPELGKPIYTDPAKK 133 Query: 505 GIIIVKLRKGQELRLRAIARKGI 573 GI+I KLRK Q LR++ IA+KGI Sbjct: 134 GILICKLRKNQSLRIKCIAKKGI 156 [144][TOP] >UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UL31_PHANO Length = 335 Score = 119 bits (297), Expect = 2e-25 Identities = 66/163 (40%), Positives = 97/163 (59%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 V+ E F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRL Sbjct: 12 VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GLIPL+S + ++RDCD +G C+ C+V L KC + V ++DL + Sbjct: 72 GLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESNR 128 Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 P D + S+G G IVKLR+GQ + +R IA+KGI Sbjct: 129 --PND--EVGRPVITDSEGTGSCIVKLRRGQAINMRCIAKKGI 167 [145][TOP] >UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium falciparum 3D7 RepID=Q8I2S6_PLAF7 Length = 335 Score = 117 bits (292), Expect = 8e-25 Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 1/166 (0%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++ I +L D + F L ++++ +ANALRR+M+SE+PT+AID+V + N+S +DEFIAHR Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 LGLIP+ S F C + C C++++ + VKC + +DV+ D+ S +H Sbjct: 72 LGLIPIDSRNVNNYEFREKCKCKE---TCSKCTIQYIIEVKCNHSNKIDVSHYDIESLEH 128 Query: 442 TV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 VP+ + +SV + I IV L K Q L ++ IA KGIG Sbjct: 129 EPNVPMPIPHGNKNSVSEN---AIPIVTLSKNQTLHMKLIATKGIG 171 [146][TOP] >UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP Length = 307 Score = 117 bits (292), Expect = 8e-25 Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 9/175 (5%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P ++I L + K L++T+ S+ N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--------MTD-STLDV 411 RLGL+PL S A R++R+CD + C CS +F L + TD +T+D Sbjct: 64 RLGLLPLFSNFAHEFRYTRECDC---EQYCSKCSFKFSLDIYAEKFPQSIFSTDLNTIDK 120 Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 Y + P+ + SS ET D + I+I KL GQ ++L AIA+KGIG Sbjct: 121 KENFFYQQ---INPIHY----SSLKETLDQKPILIGKLGIGQRIKLVAIAKKGIG 168 [147][TOP] >UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9J5_NOSCE Length = 233 Score = 115 bits (287), Expect = 3e-24 Identities = 74/165 (44%), Positives = 95/165 (57%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++ I E D+ +KF LRDT S ANALRR++ISEVPTV IDLVEIE+N++ L DE I+HR Sbjct: 2 KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 LGL+PL +++ + R D C D C+ CSV L V TD + VT KDL S D Sbjct: 62 LGLVPLYTKKDLVFR-----DDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDD 116 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V+ SS V I KL Q L++ A KG+G Sbjct: 117 VVI-------RSSPV---------ICKLGTRQNLKVICKAFKGVG 145 [148][TOP] >UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LCN7_9ALVE Length = 336 Score = 114 bits (286), Expect = 4e-24 Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 7/174 (4%) Frame = +1 Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255 MP +++ L D +KF + + + ++ANALRR+MI+EVPT+AID V IE NSS L DEF+A Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71 Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 HRLGL+P+ S+ +DC C C+V++ L V DVT D+ Sbjct: 72 HRLGLLPINSKEVDSYSDPKDCQCY---SSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPV 128 Query: 436 DHTVV------PVDFSAADSSSVETSDGR-GIIIVKLRKGQELRLRAIARKGIG 576 D P+ D + E + R GI+I KLR+ Q+L + ARKG+G Sbjct: 129 DQGTSIPESRRPLPVPLWDRTKTEEENRRNGIVIAKLRRNQQLTMHMEARKGVG 182 [149][TOP] >UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6GWS8_PENCW Length = 335 Score = 113 bits (283), Expect = 9e-24 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 2/166 (1%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+V +RE + + F L D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71 Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLG+IPL S + ++RDCD D C CSV L +C + +Y+ Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARCGSG------IMSVYAR 122 Query: 436 DHTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKG 570 D VV + V T + +G +I KLRKGQE+++ +A+KG Sbjct: 123 DLIVVGERINDKIGDPVTTDPENKGPLICKLRKGQEVKMTCLAKKG 168 [150][TOP] >UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata RepID=Q4UFZ3_THEAN Length = 354 Score = 112 bits (281), Expect = 2e-23 Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 7/182 (3%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+ A P +++ +L+ D M F L ++D S ANA+RRV++SE+P++AI++V + N+S Sbjct: 1 MDWAPRQIKPSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L V C ++ V Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCNDSNSRLV 117 Query: 412 TSKDLYSSD-HTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 T D+ D H+ +P+ AD ++ + GI IVKL++GQ + ++ A KG Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGQSINMKLTASKG 176 Query: 571 IG 576 +G Sbjct: 177 LG 178 [151][TOP] >UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon cuniculi RepID=Q8SRR5_ENCCU Length = 240 Score = 112 bits (279), Expect = 3e-23 Identities = 64/167 (38%), Positives = 95/167 (56%) Frame = +1 Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255 M + + EL ++++F L +T ANALRR++ISEVPT+AID+VEIE N++VL DE +A Sbjct: 1 MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60 Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 HRLGLIP+ S+R + + + C G C CSV F + V D+ V+++D+ Sbjct: 61 HRLGLIPIYSKRELKYK-----EECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCD 115 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 + V+ G +I KL + Q L+ R I RKG+G Sbjct: 116 EEDVIIKS---------------GPVITKLARDQGLKARCIGRKGVG 147 [152][TOP] >UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva RepID=Q4N9T5_THEPA Length = 354 Score = 111 bits (278), Expect = 4e-23 Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 M+ A P ++I +L+ D M F L ++D S ANA+RRV++SE+P++AI++V + N+S Sbjct: 1 MDWAPRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L V C + V Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCKDSDSRVV 117 Query: 412 TSKDLYSSD-HTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 T D+ D H+ +P+ AD ++ + GI IVKL++G + ++ A KG Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGHSINMKLTASKG 176 Query: 571 IG 576 +G Sbjct: 177 LG 178 [153][TOP] >UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei RepID=Q4Z7P9_PLABE Length = 331 Score = 111 bits (277), Expect = 5e-23 Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 1/166 (0%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +++I+ + + M+F L +++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 +GLIP+ S F C + C C+V++ + VKC + ++V+ D+ + DH Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKINVSHYDIEALDH 126 Query: 442 TV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +P+ + ++ I IV L K Q + ++ A KGIG Sbjct: 127 EPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKLTATKGIG 172 [154][TOP] >UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta RepID=Q9AW23_GUITH Length = 299 Score = 110 bits (276), Expect = 6e-23 Identities = 63/164 (38%), Positives = 94/164 (57%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +K+ ++ D +K + AN++RR+M++E+PT+AID V IE N+S DEFIAHRL Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GLIP+ SE A +++SR+CD + +CE CS+ F L V +S S+ Sbjct: 61 GLIPIFSENADLIKYSRECDC---ENECEKCSILFTLDVHANETEKTITSSMVKCSTACY 117 Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 + F +S + D III KL GQ ++L+A +KGIG Sbjct: 118 PLKTFFIINNSGNSRNYDDYAIIIAKLNPGQNIKLKAYVKKGIG 161 [155][TOP] >UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila RepID=CNJC_TETTH Length = 310 Score = 110 bits (275), Expect = 8e-23 Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 5/170 (2%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++ + L++ +F L + D S+AN+LRR++++E+ T+AI V++ N+S L DE+IAHR Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL-YSSD 438 LGLIPL S + + +C+ G+C+ C++ F LRV T+ L+VTS DL D Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121 Query: 439 HT----VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 HT V P+ + GI I+KL KGQ++ A+KGIG Sbjct: 122 HTDEDAVRPIKVYSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIG 171 [156][TOP] >UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RLX3_PLAYO Length = 335 Score = 110 bits (274), Expect = 1e-22 Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 1/165 (0%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 ++I+ + + M+F L ++++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+ Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GLIP+ S F C + C C+V++ + VKC + +DV+ D+ + DH Sbjct: 75 GLIPIDSRNIKNYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 131 Query: 445 V-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +P+ + ++ I I+ L K Q + ++ A KGIG Sbjct: 132 PNIPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKLTATKGIG 176 [157][TOP] >UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium chabaudi RepID=Q4XR41_PLACH Length = 331 Score = 109 bits (273), Expect = 1e-22 Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 ++I+ + + M F L +++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+ Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH- 441 GLIP+ S F C + C C+V++ + VKC + +DV+ D+ + DH Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 127 Query: 442 ----TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +P D + ++T+ I IV L K Q L ++ A KGIG Sbjct: 128 PNIPMPIPNDNKHNNIDKMDTA----IPIVTLSKNQTLHMKLTATKGIG 172 [158][TOP] >UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1 Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR Length = 363 Score = 106 bits (265), Expect = 1e-21 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 7/171 (4%) Frame = +1 Query: 82 RVKIRELKD------DYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243 +VKI + K + ++F+L + D S AN LRRVM++EVP + I+ V I N+SVL D Sbjct: 28 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87 Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSK 420 E IAHR+GL+PL S +A M+++RDC C G G C C + L+V C ++ +L V Sbjct: 88 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 145 Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 L D V PV +S+ G+ ++ L + QEL LR + RK I Sbjct: 146 SLKIDDEEVYPV-----------SSEEHGVWLLTLGRSQELNLRVVIRKNI 185 [159][TOP] >UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2 Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG Length = 337 Score = 104 bits (260), Expect = 4e-21 Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG 300 F+L + D S AN LRRV+++EVP + ++ V I N+SVL DE IAHR+GL+PL S+RA Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80 Query: 301 MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDLYSSDHTVVPVDFSAADS 477 M+F DC C G G C C + L+V+C ++ +L V + L D V PV Sbjct: 81 MQFFHDC-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV------- 131 Query: 478 SSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 +S+ RG+ ++ L + QE+ LR + RK I Sbjct: 132 ----SSEERGVWLLTLGRSQEINLRVLIRKSI 159 [160][TOP] >UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA Length = 322 Score = 104 bits (260), Expect = 4e-21 Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 13/179 (7%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P++ + + ++F L + ANALRRVMI+EVPT+A+D VE N+S L DE+IAH Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGD--GQCEYCSVEFHLRVKC--MTDSTLDVTSKDL 426 RL LIP SE A + C+ CDG G C C+V + + C +DS ++VTS DL Sbjct: 73 RLALIPFVSEDADKFFYHSQCN-CDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131 Query: 427 -------YSSDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576 ++ T+ + ++ D + + I KL GQ LRL A RKGIG Sbjct: 132 KLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGIG 190 [161][TOP] >UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major strain Friedlin RepID=Q4FY45_LEIMA Length = 337 Score = 104 bits (259), Expect = 6e-21 Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 2/165 (1%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 VK + + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSSD 438 GL+PL SE+A + F +DC C G G C C + L+V+C + S L D Sbjct: 69 GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDD 126 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V PV +++ GI +V L + Q L L + RK I Sbjct: 127 AEVYPV-----------SAEEHGIWLVTLGRSQVLDLHVVIRKNI 160 [162][TOP] >UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania infantum RepID=A4I451_LEIIN Length = 337 Score = 104 bits (259), Expect = 6e-21 Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 2/165 (1%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 VK + + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSSD 438 GL+PL SE+A + F +DC C G G C C + L+V+C + S L D Sbjct: 69 GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDD 126 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 V PV +++ GI +V L + Q L L + RK I Sbjct: 127 AEVYPV-----------SAEEHGIWLVTLGRSQVLDLHVVIRKNI 160 [163][TOP] >UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania braziliensis RepID=A4HH22_LEIBR Length = 337 Score = 104 bits (259), Expect = 6e-21 Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%) Frame = +1 Query: 115 MKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 294 + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A Sbjct: 19 LTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKA 78 Query: 295 MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAAD 474 + F +DC C G G C C + L+V+C + SK ++ D + D Sbjct: 79 KRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQI-------D 125 Query: 475 SSSV--ETSDGRGIIIVKLRKGQELRLRAIARKGI 573 S+ V +++ GI +V L + Q L L + RK I Sbjct: 126 SAEVYPVSAEEHGIWLVTLGRSQVLDLNVLIRKNI 160 [164][TOP] >UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis RepID=A7AWB4_BABBO Length = 382 Score = 103 bits (258), Expect = 7e-21 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 46/221 (20%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 ME +S P + I L M F L + D + AN+LRR+M+SE+P++AI++V + N+S Sbjct: 1 MEWSSRQLRPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 VL+DE+IAHRLGL+P+ S A + C D +C C+VE+ L VKCM D T V Sbjct: 61 VLHDEYIAHRLGLLPIESSSARNFEYRDKCTCSD---KCSRCTVEYSLDVKCM-DDTRVV 116 Query: 412 TSKDL--------YSSDHTVVPVDFSAAD-----------------------SSSVETSD 498 T D+ + + +PV +AD + +V+ D Sbjct: 117 THYDINLDSWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPD 176 Query: 499 G---------------RGIIIVKLRKGQELRLRAIARKGIG 576 G GI IVKL++GQ L L+ A KG+G Sbjct: 177 GPHTGAVDRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLG 217 [165][TOP] >UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis RepID=Q5CJZ9_CRYHO Length = 344 Score = 103 bits (257), Expect = 1e-20 Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +K+ ELK DY+ F++ DAS+ANALRR+++ E+PTVAI+ V+I N+ V+ DE +AHRL Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS---TLDVTSKDLYSS 435 GLIP+ + + D D + + C F L VKC D +TSK +YS Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170 Query: 436 DHTVVPVDFS-----AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 D +P+ + V T D I+I KLR GQ + K IG Sbjct: 171 DLVWIPLSDNQRKKFGKSPPKVVTDD---ILITKLRPGQSIEAILYCEKNIG 219 [166][TOP] >UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa II RepID=Q5CPY6_CRYPV Length = 344 Score = 103 bits (256), Expect = 1e-20 Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +K+ ELK DY+ F++ DAS+ANALRR+++ E+PTVAI+ V+I N+ V+ DE +AHRL Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS---TLDVTSKDLYSS 435 GLIP+ + + D D + + C F L VKC D +TSK +YS Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170 Query: 436 DHTVVPVDFS-----AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 D +P+ + V T D I+I KLR GQ + K IG Sbjct: 171 DLVWIPLSDNQRKKFGKTPPKVVTDD---ILITKLRPGQSIEAILYCEKNIG 219 [167][TOP] >UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1 Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT Length = 351 Score = 100 bits (250), Expect = 6e-20 Identities = 69/169 (40%), Positives = 91/169 (53%), Gaps = 5/169 (2%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +KI EL DY+ F+L DA+VANALRR+++ EVPTVAI+ V+I NS V+ DE +AHRL Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GLIP + + + D D + + C VE + K D +TSK +YS D Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVCFKLCVECN---KYDIDDKNGITSKAIYSKDLI 182 Query: 445 VVPVDFSAAD-----SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 VP+ S SV D I+I KLR GQ + KGIG Sbjct: 183 WVPMSESQKQIFEKKPPSVVYPD---ILITKLRPGQVIEAILYCEKGIG 228 [168][TOP] >UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER Length = 117 Score = 99.0 bits (245), Expect = 2e-19 Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 1/85 (1%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSERAM-GMRFSRD 318 F+AHR+GLIPL S+ + ++++RD Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRD 87 [169][TOP] >UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE Length = 308 Score = 98.6 bits (244), Expect = 3e-19 Identities = 67/165 (40%), Positives = 90/165 (54%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R++I EL D+ KF + D S+ANA+RRVMI+EVP +AI V+I N+S L+DEF+A R Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 LGLIPL S A + + DA D Q V F LR K + D+ L++TS+ L Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQ--KTKVVFTLRQKNLNDAPLEITSQHLEPEFG 129 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V + S GI I +L K Q + +R A KG G Sbjct: 130 QVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVRCHALKGFG 174 [170][TOP] >UniRef100_Q8IP63 RNA polymerase II 33kD subunit, isoform B n=1 Tax=Drosophila melanogaster RepID=Q8IP63_DROME Length = 117 Score = 97.8 bits (242), Expect = 5e-19 Identities = 47/74 (63%), Positives = 60/74 (81%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSE 288 F+AHR+GLIPL S+ Sbjct: 63 FLAHRIGLIPLISD 76 [171][TOP] >UniRef100_B3MN19 GF19666 n=1 Tax=Drosophila ananassae RepID=B3MN19_DROAN Length = 125 Score = 97.8 bits (242), Expect = 5e-19 Identities = 47/74 (63%), Positives = 60/74 (81%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62 Query: 247 FIAHRLGLIPLTSE 288 F+AHR+GLIPL S+ Sbjct: 63 FLAHRIGLIPLISD 76 [172][TOP] >UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI Length = 375 Score = 95.9 bits (237), Expect = 2e-18 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 18/183 (9%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV+ +L F L DAS+ANALRR++ISE+PT+AI+ V I N+SV+ DE +AHR Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113 Query: 262 LGLIPLTSERAMGMR-----FSRDCDACDGDGQCEYCSVEFHLRVKCM---------TDS 399 LGL+P T+ +A G+R ++ D GD +Y +V+ LR++C DS Sbjct: 114 LGLVPFTANKA-GLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIECTRNPDAAPGEIDS 171 Query: 400 TLDVTSKDLYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 T + +++SD VP +++ ++V ++ I++ KLR GQ L + K Sbjct: 172 TKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTN-PDILLAKLRPGQVLEMDMHMHK 230 Query: 568 GIG 576 GIG Sbjct: 231 GIG 233 [173][TOP] >UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12ZR3_METBU Length = 267 Score = 95.9 bits (237), Expect = 2e-18 Identities = 68/164 (41%), Positives = 88/164 (53%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 + I EL D KF L +T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RL Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GLIPLT+ + +D CDG G C C+V L V+ V S D+ SSD Sbjct: 63 GLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPN 119 Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V P D + I I+ LR GQ++ L AIA G G Sbjct: 120 VQPAD--------------KNIPIIDLRVGQKVVLEAIAHMGYG 149 [174][TOP] >UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S4F3_TRIAD Length = 349 Score = 95.1 bits (235), Expect = 3e-18 Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 10/181 (5%) Frame = +1 Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243 S+ + +++I ++ ++ M+F++ DAS+ANA RR+M+SEVP +AI+ V I N+S++ D Sbjct: 42 SFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQD 101 Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTL--DVTS 417 E +AHRLGLIP+ ++ + F+ GD S+ F L++KC+ + + D T Sbjct: 102 EVLAHRLGLIPIAADPKLFDNFN------PGDTPTNKNSITFTLQIKCIRNRSAHSDATD 155 Query: 418 -KDLYSSDHTV---VPVDFSAADSSSVETSDGR----GIIIVKLRKGQELRLRAIARKGI 573 ++LY + + + ++ +++ D R I+I KLR GQE+ L I KG Sbjct: 156 PEELYINSKVTTKDLKLKYNEDQDNAIPNKDIRPVHEDILIAKLRPGQEIDLEMICVKGT 215 Query: 574 G 576 G Sbjct: 216 G 216 [175][TOP] >UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KG24_CRYNE Length = 377 Score = 94.0 bits (232), Expect = 8e-18 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 29/194 (14%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 PR+ +R L + F L + + AN+LRRVM+++VPT+AID V N++ L DE IAH Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84 Query: 259 RLGLIPLTSER-AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S + G+R++RDCD +G C YC V L+V T S D +S Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV---TFSGNDGEQFMRVTS 138 Query: 436 DHTVV---------------PVDFSAADSSSVETSD-------GRG------IIIVKLRK 531 D V P + S D + D G+G I+I K+ K Sbjct: 139 DMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGK 198 Query: 532 GQELRLRAIARKGI 573 GQE+ + A KGI Sbjct: 199 GQEIDVLCKAYKGI 212 [176][TOP] >UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q55RL9_CRYNE Length = 377 Score = 94.0 bits (232), Expect = 8e-18 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 29/194 (14%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 PR+ +R L + F L + + AN+LRRVM+++VPT+AID V N++ L DE IAH Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84 Query: 259 RLGLIPLTSER-AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 RLGLIPL S + G+R++RDCD +G C YC V L+V T S D +S Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV---TFSGNDGEQFMRVTS 138 Query: 436 DHTVV---------------PVDFSAADSSSVETSD-------GRG------IIIVKLRK 531 D V P + S D + D G+G I+I K+ K Sbjct: 139 DMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGK 198 Query: 532 GQELRLRAIARKGI 573 GQE+ + A KGI Sbjct: 199 GQEIDVLCKAYKGI 212 [177][TOP] >UniRef100_Q46GD0 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanosarcina barkeri str. Fusaro RepID=Q46GD0_METBF Length = 266 Score = 94.0 bits (232), Expect = 8e-18 Identities = 65/164 (39%), Positives = 85/164 (51%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 V I EL D KF L S AN +RR MI++VPT+AI+ V + N+SVL DE +A RL Sbjct: 5 VDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALRL 64 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 LIPL ++ + +CD C G+G C C V L + V S+DL SSD Sbjct: 65 SLIPLVTDVETYVP-QAECDVCGGEG-CPACEVSLTL----SAEGPCTVYSRDLISSDPK 118 Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 + P D I IV+L+KGQ+L L A+A G G Sbjct: 119 IQPAD--------------PNIPIVELKKGQKLVLEALAHMGYG 148 [178][TOP] >UniRef100_Q2NFZ6 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=RPOD_METST Length = 270 Score = 93.6 bits (231), Expect = 1e-17 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 2/166 (1%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 ++IRE D+ F + D + N +RR+ + E+PT+AI+ V I N + + DE +AHRL Sbjct: 3 IEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRL 62 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM--TDSTLDVTSKDLYSSD 438 GLIP+ ++ + S CD + C++C V F L+ KC DS + V SKDL S D Sbjct: 63 GLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKCEEGNDSKI-VYSKDLKSDD 117 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V PV + I IV+LR+G+E+ L AIA G+G Sbjct: 118 PAVKPVYDT--------------IPIVRLREGEEVELEAIAELGLG 149 [179][TOP] >UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus kamchatkensis 1221n RepID=B8D6F8_DESK1 Length = 280 Score = 92.8 bits (229), Expect = 2e-17 Identities = 67/166 (40%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 + I E +K LRD + N+LRR ++SEVPT+A+D V I NSSV DE+I+HRL Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62 Query: 265 GLIPLTSERAMG-MRFSRDC-DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 GLIPL S A+ + +C +A D + C V L L V S+DL SSD Sbjct: 63 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 VVPV I I+KL K Q +RL A AR G G Sbjct: 123 PDVVPVYGE--------------IPILKLIKDQSIRLEAYARLGRG 154 [180][TOP] >UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis RepID=UPI000180C3EB Length = 345 Score = 92.4 bits (228), Expect = 2e-17 Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 9/173 (5%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 + + EL D M+F++ DA++ANA RR++I+EVPT+AI+ V I N++V+ DE +AHRL Sbjct: 48 INVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRL 107 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD-------STLDVTSK- 420 GLIPLT++ + D D DG E ++EF L +KC + + LDV K Sbjct: 108 GLIPLTADAKLFEYRQGD----DADGTPE-DTLEFELNIKCTKNLSAPKDTTDLDVLYKH 162 Query: 421 -DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +YS D +P+ + D +V+ I++ KLR G L ++ A KG+G Sbjct: 163 HKVYSKDIKWIPLG-NQKDLLTVKPVYD-DILVAKLRPGHILDVKLHAVKGVG 213 [181][TOP] >UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain containing protein n=1 Tax=Babesia bovis RepID=A7AQ72_BABBO Length = 319 Score = 91.7 bits (226), Expect = 4e-17 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 12/177 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKF----------ELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 R + E+KD +KF E+ + ++ANA+RR++++EVPT+AI+ V I N+ Sbjct: 25 RTVLDEVKDVKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTG 84 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 V+ DE +AHRLGL+P + + + + D D + C FHL+V+C +S Sbjct: 85 VIQDEVLAHRLGLVPFDCNPDL-IPYRDNEDLSDKNSVC------FHLKVECKKESLAGR 137 Query: 412 TSKDLYSSDHTVVPVDFSAAD--SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T+ +Y+ D VP+ A+ + + I++ KL GQE+ L+A KGIG Sbjct: 138 TNLPVYAGDMKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIG 194 [182][TOP] >UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus mordax RepID=C1BKA8_OSMMO Length = 351 Score = 91.3 bits (225), Expect = 5e-17 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R+ I E+ + M+F++ DA++ANA RR+M++EVPT+A++ V I N+S++ DE +AHR Sbjct: 51 RIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHR 110 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423 LGLIP+ ++ + + + + +G E +++ L++KC + S D Sbjct: 111 LGLIPIKADPRLFEYRNIGEEGGEEEG-TEIDTIQLQLKIKCTRNPRAPKDSSDPRELYL 169 Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 +YS D VP+ A + G I+I +LR GQEL + KGIG Sbjct: 170 NHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQELDVVMSCVKGIG 224 [183][TOP] >UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1 Tax=Neurospora crassa RepID=Q7SHT0_NEUCR Length = 378 Score = 91.3 bits (225), Expect = 5e-17 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 14/167 (8%) Frame = +1 Query: 118 KFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 297 +F L DAS+ANA RR+MI+++PT+AI+ + + N+SV+ DE + HRLGLIP T + Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135 Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDHTVV 450 F + G+ C+Y +VE L+VKC + + SKD +Y+ D V Sbjct: 136 LHNFLKWYK--KGETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFV 193 Query: 451 PVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 P FS ++ D I++ K+R GQE+ L KG+G Sbjct: 194 PKGRQAKYFSGENAIRPTNPD---ILVAKMRPGQEIDLTMHMHKGVG 237 [184][TOP] >UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E11AB Length = 347 Score = 90.9 bits (224), Expect = 6e-17 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 11/183 (6%) Frame = +1 Query: 61 ASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLN 240 A + + ++ + L + M+F++ DA++ NA RR++++EVPT+AI+ V I N+S++ Sbjct: 40 AKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQ 99 Query: 241 DEFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417 DE +AHRLGLIP+ ++ R R S D +A + +G E +++ L++ C + S Sbjct: 100 DEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDS 157 Query: 418 KD---------LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARK 567 D +YS D VP+ A ++ G I+I +LR GQEL + K Sbjct: 158 SDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIK 217 Query: 568 GIG 576 GIG Sbjct: 218 GIG 220 [185][TOP] >UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E11AA Length = 351 Score = 90.9 bits (224), Expect = 6e-17 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 11/183 (6%) Frame = +1 Query: 61 ASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLN 240 A + + ++ + L + M+F++ DA++ NA RR++++EVPT+AI+ V I N+S++ Sbjct: 44 AKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQ 103 Query: 241 DEFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417 DE +AHRLGLIP+ ++ R R S D +A + +G E +++ L++ C + S Sbjct: 104 DEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDS 161 Query: 418 KD---------LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARK 567 D +YS D VP+ A ++ G I+I +LR GQEL + K Sbjct: 162 SDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIK 221 Query: 568 GIG 576 GIG Sbjct: 222 GIG 224 [186][TOP] >UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pyrenophora tritici-repentis Pt-1C-BFP RepID=B2WCA1_PYRTR Length = 376 Score = 90.9 bits (224), Expect = 6e-17 Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 21/174 (12%) Frame = +1 Query: 118 KFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 297 +F L D SVANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA Sbjct: 63 QFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRAT 122 Query: 298 GMR---FSRDCDACDGD-GQCEYCSVEFHLRVKCM-------------TDSTLDVTSKDL 426 R +++ D +G G +V L+ KC TD ++ Sbjct: 123 LRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHNV 182 Query: 427 YSSDHTVVPVDFSAADSSSVE----TSDGRGIIIVKLRKGQELRLRAIARKGIG 576 Y+ D P A + S E S I+I K+R GQEL +R A KGIG Sbjct: 183 YAKDMRFEPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIG 236 [187][TOP] >UniRef100_Q8PV16 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosarcina mazei RepID=RPOD_METMA Length = 266 Score = 90.9 bits (224), Expect = 6e-17 Identities = 65/164 (39%), Positives = 85/164 (51%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 V I EL D KF L + AN +RR MI++VPT+AI+ V + N+SVL DE +A RL Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 LIPL ++ M +C+ C G+G C C V L + V S+DL SSD Sbjct: 65 SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTL----SAEGPGTVYSRDLISSDPK 118 Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 + P D I IV+L+KGQ+L L AIA G G Sbjct: 119 IQPAD--------------PNIPIVELKKGQKLVLEAIAHMGYG 148 [188][TOP] >UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox lucius RepID=C1BYW4_ESOLU Length = 263 Score = 90.5 bits (223), Expect = 8e-17 Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R+ + ++ + M+F++ DAS+ANA RR++++EVPT+A++ V I N+S++ DE +A R Sbjct: 51 RIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQR 110 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423 LGLIP+ ++ R +A D +G E +++ L++KC + S D Sbjct: 111 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNHQATKDSADPQELYL 165 Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 +YS D T VP+ A + G I++ KLR GQEL + KGIG Sbjct: 166 NHMVYSKDMTWVPIGNQADVVADANIGPVHGDILLAKLRPGQELDIVMHCVKGIG 220 [189][TOP] >UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JXY4_SCHJY Length = 349 Score = 90.5 bits (223), Expect = 8e-17 Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 10/174 (5%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +KI L D M F++ DAS+ NA RR++I+E+PT+AI+ V I N+S+L DE ++HRL Sbjct: 48 IKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRL 107 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC---------MTDSTLDVTS 417 GLIPL ++ M F R + +Y +V F L VKC TD + Sbjct: 108 GLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLN 166 Query: 418 KDLYSSDHTVVPVDFSAAD-SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 ++ S + P A + + T I++ KLR GQE+ L A A GIG Sbjct: 167 SEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIG 220 [190][TOP] >UniRef100_C8S812 RNA polymerase insert n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S812_FERPL Length = 262 Score = 90.1 bits (222), Expect = 1e-16 Identities = 65/165 (39%), Positives = 88/165 (53%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V+I ++ +KF L+D+D ANA RR M S VPT+A+D V+ +N+S+L DE IAHR Sbjct: 2 KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 +GLIPL ++ F C C+G+G C C V L V + V S DL D Sbjct: 62 IGLIPLKTDLER-YNFQDKC-VCEGEG-CPNCQVSLRLNV----EGPKTVYSGDLIPDDP 114 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V PV I IV+L +GQ+L L A+AR G G Sbjct: 115 EVKPV--------------YDNIPIVELYEGQQLMLEAVARLGTG 145 [191][TOP] >UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera RepID=UPI00019857F6 Length = 372 Score = 89.7 bits (221), Expect = 1e-16 Identities = 68/190 (35%), Positives = 99/190 (52%), Gaps = 25/190 (13%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV++ L +D M+F++ D S+ANA RR++I+E+PT+AI+ V I N+S++ DE +AHR Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426 LGLIP+ ++ + F D + D E ++ F+L V+C L V S +L Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLP 179 Query: 427 -----------YSSDHTVVP---VDFSAADSSSVETSDGR------GIIIVKLRKGQELR 546 +S T P FS + S E SD III KL GQE+ Sbjct: 180 HGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIE 239 Query: 547 LRAIARKGIG 576 L A A KG+G Sbjct: 240 LEAHAVKGMG 249 [192][TOP] >UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF50_PARBP Length = 345 Score = 89.7 bits (221), Expect = 1e-16 Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294 F L DAS+ANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E Sbjct: 31 FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 90 Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438 +R+ R + D G +Y ++ HL VKC + +D +Y+ D Sbjct: 91 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKD 150 Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV F D T+ I++ KLR GQ++ + KGIG Sbjct: 151 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 199 [193][TOP] >UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SSV7_METLZ Length = 275 Score = 89.7 bits (221), Expect = 1e-16 Identities = 63/159 (39%), Positives = 84/159 (52%) Frame = +1 Query: 100 LKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPL 279 L D +F + + ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+ Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67 Query: 280 TSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVD 459 ++ + R +C G+G C +C+V F L V + VTS DL S D VVPV Sbjct: 68 KTD--LSQYVPRSECSCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVPVH 120 Query: 460 FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 I IVKL + Q++ L A+A G Sbjct: 121 --------------NNIPIVKLWENQKVVLEAVAEVNYG 145 [194][TOP] >UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E468FB Length = 335 Score = 89.4 bits (220), Expect = 2e-16 Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R+ + L ++F++ D +VANA RR++++EVPT+AI+ V I N+S++ DE +AHR Sbjct: 35 RIDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHR 94 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM--TDSTLDVTSKDLYSS 435 LGLIP+ ++ + + + D G G+ ++EF L+VKC +++ D T D Sbjct: 95 LGLIPIKADPRI-FEYREEGDE-TGTGE---DTIEFQLKVKCTKNPNASKDATDPDELYK 149 Query: 436 DHTVVPVDFSAADSSSVETSDG--------RGIIIVKLRKGQELRLRAIARKGIG 576 + V F + E + G + I+I KLR GQE+ L+ KGIG Sbjct: 150 NAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIAKLRPGQEIDLKMHCVKGIG 204 [195][TOP] >UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA Length = 347 Score = 89.4 bits (220), Expect = 2e-16 Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 11/176 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R+ I +++DD ++F++ DAS+ANA RR+++SEVPTVA++ V + N+S++ DE +AHR Sbjct: 50 RIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHR 109 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSS 435 LGLIP+ ++ + S D D +G E +++F L VKC + ++ D + + Sbjct: 110 LGLIPIRADPRLFEYRSAD----DAEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYL 164 Query: 436 DHTVVPVDFSAADSSS-----VETSDGR----GIIIVKLRKGQELRLRAIARKGIG 576 +H V + ET R I+I +LR GQE+ + KGIG Sbjct: 165 NHKVYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIG 220 [196][TOP] >UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex quinquefasciatus RepID=B0W725_CULQU Length = 335 Score = 89.4 bits (220), Expect = 2e-16 Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 11/181 (6%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 + R ++ + +++ ++F++ ++ANA RR+M+SEVP++AI+ V I N+S++ DE Sbjct: 40 FKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99 Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVTS 417 +AHRLGLIPL ++ + + + DA + ++EF L+VKC DST +VT+ Sbjct: 100 VLAHRLGLIPLKADPRLFEYKTNEGDAANAQD-----TLEFELKVKCTKKNKDST-EVTN 153 Query: 418 KDLYSSDHTV-------VPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGI 573 D +H++ VPV A+ + I+I ++R G E ++ A KG+ Sbjct: 154 NDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPIDDDILISRMRPGHEFDIKLFAVKGV 213 Query: 574 G 576 G Sbjct: 214 G 214 [197][TOP] >UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1GK69_PARBD Length = 380 Score = 89.4 bits (220), Expect = 2e-16 Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294 F L DAS+ANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E Sbjct: 66 FSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125 Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438 +R+ R + D G +Y ++ HL V+C + +D +Y+ D Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKD 185 Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV F D T+ I++ KLR GQ++ + KGIG Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 234 [198][TOP] >UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1 Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949 Length = 346 Score = 89.0 bits (219), Expect = 2e-16 Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 13/178 (7%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV + ++++D ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE +AHR Sbjct: 50 RVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHR 109 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423 LGLIP+T++ R R D + + D +++F L+VKC + + S D Sbjct: 110 LGLIPITADPRLFEYRNQGDEEGTEID------TLQFQLKVKCTWNPSAAKDSSDPNQLY 163 Query: 424 ----LYSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +Y+ T VP+ A + + D I+I +LR GQEL L KG+G Sbjct: 164 LNHKVYTKHMTWVPLGNQADLFPEGAIRPVHD--DILITQLRPGQELDLLMHYVKGVG 219 [199][TOP] >UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M554_ENTHI Length = 283 Score = 88.6 bits (218), Expect = 3e-16 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 1/176 (0%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 ME Y R P + E K++ + F + TD S+ N LRRV+++E PT+AI LV + NSS Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 L DEFIAHRLGLIP+ S + + D L+ + ++ + V Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVV 106 Query: 412 TSKDLYS-SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS DL S D V PV++ +D I+I +L Q + + +KG G Sbjct: 107 TSNDLVSIGDKRVAPVNYK---------NDVDPIVITQLGPRQNIHMVCYVKKGTG 153 [200][TOP] >UniRef100_B1YC30 DNA-directed RNA polymerase subunit D n=1 Tax=Thermoproteus neutrophilus V24Sta RepID=RPOD_THENV Length = 262 Score = 88.6 bits (218), Expect = 3e-16 Identities = 65/165 (39%), Positives = 88/165 (53%) Frame = +1 Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255 MP VK+ E ++K + S+ N+LRRV+ISE+P +AID V + N+SV+ DE +A Sbjct: 1 MPAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLA 60 Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435 HRLGLIPLT+ + DC++ G C+V F L+V D + V S DL S Sbjct: 61 HRLGLIPLTTP-LQSLPPIEDCES--GLADPSECTVRFTLQVN--ADGEVTVYSGDLVSE 115 Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 VVPV + I IVKL KGQ + L A A+ G Sbjct: 116 RPDVVPVH--------------KDIPIVKLVKGQSIVLEAYAKLG 146 [201][TOP] >UniRef100_O28002 DNA-directed RNA polymerase subunit D n=1 Tax=Archaeoglobus fulgidus RepID=RPOD_ARCFU Length = 264 Score = 88.6 bits (218), Expect = 3e-16 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 1/168 (0%) Frame = +1 Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255 MP ++I E KD +KF L++ ++AN+ RR M +EVP +A+D V+I +NSS DE IA Sbjct: 2 MPEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIA 61 Query: 256 HRLGLIPLTSERAMGMRFSRDCD-ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432 HRL ++P+ + RF+ + +C G+G C C + F L V+ K +YS Sbjct: 62 HRLAMLPI---KTYLDRFNMQSECSCGGEG-CPNCQISFRLNVE---------GPKVVYS 108 Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 DF + D V D I +++L +GQ+L L A+AR G G Sbjct: 109 G-------DFISDDPDVVFAID--NIPVLELFEGQQLMLEAVARLGTG 147 [202][TOP] >UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FAR4_MAIZE Length = 372 Score = 88.2 bits (217), Expect = 4e-16 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 19/184 (10%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +++I L +DYM+F++ DAS+ANA RR++ISEVPT+AI+ V + N+SV+ DE ++HR Sbjct: 73 KIEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHR 132 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426 LGLIPL ++ + S + D E ++ + L V C +S + V S +L Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPNERNTIVYKLHVSCPKNSQRITVKSSELEWLP 186 Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564 S D FS + +E G + I I +L GQ + L A A Sbjct: 187 EGSQLSMSAPAQSGDKQKTFTSFSQSQKEILEKPLGVKYKDITIARLGPGQAIELEAHAV 246 Query: 565 KGIG 576 KG G Sbjct: 247 KGTG 250 [203][TOP] >UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EHR6_ENTDI Length = 283 Score = 88.2 bits (217), Expect = 4e-16 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 1/176 (0%) Frame = +1 Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231 ME Y R P + E K++ + F + TD S+ N LRRV+++E PT+AI LV + NSS Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60 Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411 L DEFIAHRLGLIP+ S + + D L+ + ++ + V Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKKENNSNQLVVV 106 Query: 412 TSKDLYS-SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 TS DL S D V PV++ +D I+I +L Q + + +KG G Sbjct: 107 TSNDLVSIGDKRVAPVNY---------RNDVDPIVITQLGPRQNIHMVCYVKKGTG 153 [204][TOP] >UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KIG6_CRYNE Length = 350 Score = 88.2 bits (217), Expect = 4e-16 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 11/173 (6%) Frame = +1 Query: 91 IRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 270 ++ L ++F+L DAS+ANALRR +I+EVPTVAI+ V + N+S++ DE + HR+GL Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110 Query: 271 IPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD-------- 423 +PL + R++ R S + + D +V F LRV+C +D + D Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164 Query: 424 -LYSSDHTVVPV-DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +YS VP D I++VKLR GQ++ L ARKG+G Sbjct: 165 NVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVG 217 [205][TOP] >UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PBM5_USTMA Length = 320 Score = 88.2 bits (217), Expect = 4e-16 Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 13/178 (7%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V + L D +F+L DAS+ANA+RRV+++EVPTVAI+ V I N+S++ DE ++HR Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153 Query: 262 LGLIPLT-SERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYS 432 LGL+PL + + MR GD + +V FHL+ KC + + T D Sbjct: 154 LGLVPLAINPDKVAMRM-------PGDEADDSNTVVFHLKAKCERNRSAARGETDPDKLY 206 Query: 433 SDHTVVPVDF----------SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 H V ADS D I+I KLR GQEL L KGIG Sbjct: 207 IGHNVYSEQLRWDAKGGQEKDFADSPPRPVQD--KILIAKLRPGQELDLELHCEKGIG 262 [206][TOP] >UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HA00_AJECH Length = 380 Score = 88.2 bits (217), Expect = 4e-16 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294 F L DA++ANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125 Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438 +R+ R + G +Y +V HL V+C + D +Y+ D Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185 Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV + + V S I++ KLR GQ++ + KGIG Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234 [207][TOP] >UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1 Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG Length = 380 Score = 88.2 bits (217), Expect = 4e-16 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294 F L DA++ANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125 Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438 +R+ R + G +Y +V HL V+C + D +Y+ D Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185 Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV + + V S I++ KLR GQ++ + KGIG Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234 [208][TOP] >UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN Length = 380 Score = 88.2 bits (217), Expect = 4e-16 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294 F L DA++ANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125 Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438 +R+ R + G +Y +V HL V+C + D +Y+ D Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185 Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV + + V S I++ KLR GQ++ + KGIG Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234 [209][TOP] >UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus marinus F1 RepID=A3DMQ6_STAMF Length = 280 Score = 88.2 bits (217), Expect = 4e-16 Identities = 63/156 (40%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Frame = +1 Query: 115 MKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 294 ++ ++D V N++RR +I+EVPT+AID V +NSSV DE+IAHRLGLIPLTSE A Sbjct: 13 LRLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAA 72 Query: 295 MG-MRFSRDC-DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSA 468 + + +C +A D E C V+ L K + + S DL +SD V PV Sbjct: 73 LDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKPV---- 128 Query: 469 ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 I I+ L K QE+RL A AR G G Sbjct: 129 ----------YDNIPIIVLGKNQEIRLEAYARLGRG 154 [210][TOP] >UniRef100_UPI00005A0224 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C isoform 2 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0224 Length = 72 Score = 87.8 bits (216), Expect = 5e-16 Identities = 42/68 (61%), Positives = 55/68 (80%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62 Query: 247 FIAHRLGL 270 FIAHRLGL Sbjct: 63 FIAHRLGL 70 [211][TOP] >UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio RepID=Q6DRM8_DANRE Length = 343 Score = 87.8 bits (216), Expect = 5e-16 Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 11/176 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R++I ++ ++F++ DA++ANA RR++++EVPT+AI+ V I N+S++ DE +AHR Sbjct: 47 RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 106 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423 LGL+P+ ++ R R S D + + D +++ L+VKC + S D Sbjct: 107 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 160 Query: 424 ----LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 +YS D +P+ A + + G I++ ++R GQEL + KGIG Sbjct: 161 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIG 216 [212][TOP] >UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio RepID=A2ATX1_DANRE Length = 362 Score = 87.8 bits (216), Expect = 5e-16 Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 11/176 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R++I ++ ++F++ DA++ANA RR++++EVPT+AI+ V I N+S++ DE +AHR Sbjct: 66 RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 125 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423 LGL+P+ ++ R R S D + + D +++ L+VKC + S D Sbjct: 126 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 179 Query: 424 ----LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 +YS D +P+ A + + G I++ ++R GQEL + KGIG Sbjct: 180 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIG 235 [213][TOP] >UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment) n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR Length = 347 Score = 87.8 bits (216), Expect = 5e-16 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V I L + M FE+ DAS+ANA RR++I+E+PT+A + V I N+S++ DE ++HR Sbjct: 46 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 105 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423 +GL+P++++ M F + +Y +V F L KC + KD Sbjct: 106 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 164 Query: 424 ---LYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +YS D P + A + V D I++ KLR GQE+ L A A GIG Sbjct: 165 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPD---IVVAKLRPGQEIDLEAHAILGIG 219 [214][TOP] >UniRef100_Q0W1V3 DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W1V3_UNCMA Length = 262 Score = 87.8 bits (216), Expect = 5e-16 Identities = 63/163 (38%), Positives = 86/163 (52%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +++I ELKD KF L D + AN LRR MI++VP +AID V+I N+SVL DE +A R Sbjct: 2 KLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALR 61 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 LGLIPL + M + +C+ C G G C C V + + V S D+ SSD Sbjct: 62 LGLIPLKTNLDM-YQLQSECE-CKGAG-CSLCQV----TLSVSAEGPCVVHSSDMKSSDP 114 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 VPVD I I++L++GQ++ AR G Sbjct: 115 ETVPVD--------------NNIPIIELKQGQKVVASGTARLG 143 [215][TOP] >UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO Length = 348 Score = 87.8 bits (216), Expect = 5e-16 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V I L + M FE+ DAS+ANA RR++I+E+PT+A + V I N+S++ DE ++HR Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423 +GL+P++++ M F + +Y +V F L KC + KD Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165 Query: 424 ---LYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +YS D P + A + V D I++ KLR GQE+ L A A GIG Sbjct: 166 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPD---IVVAKLRPGQEIDLEAHAILGIG 220 [216][TOP] >UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE Length = 316 Score = 87.4 bits (215), Expect = 7e-16 Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 13/183 (7%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 + R + I D+ + FE+ + DA +AN+LRR+MI+E+PT+AI V++ N+SV+ DE Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86 Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTLD 408 +AHRLGLIP+ ++ ++F + D + E S++F L KC D ++ Sbjct: 87 VLAHRLGLIPIIAD---PLQF---VEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIE 140 Query: 409 --VTSKDLYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 T+ ++SS P F+A V ++ III KLR+ QEL LR I K Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSN----IIIAKLRENQELNLRLICEK 196 Query: 568 GIG 576 G+G Sbjct: 197 GVG 199 [217][TOP] >UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI Length = 339 Score = 87.4 bits (215), Expect = 7e-16 Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +VKI L D+Y F+L D S+ANA RR+MI+++PT+A++ V I N+S++ DE +AHR Sbjct: 46 QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD--LYSS 435 LGL+PL R DA + + + S F LR+ + D T K+ +Y+ Sbjct: 106 LGLVPLVINPERINALPRGLDASEIEDYYD-DSNTFVLRLNVTCERLADGTMKNAHIYAR 164 Query: 436 DHTVVPV--------DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 D T P+ D + V D I+I KLR Q + L G G Sbjct: 165 DITFDPMGNQCQWVKDEGLENVFKVANPD---ILIAKLRPNQSINLTMFCHLGFG 216 [218][TOP] >UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H4P1_PARBA Length = 380 Score = 87.4 bits (215), Expect = 7e-16 Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 19/171 (11%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294 F L DAS+ANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E Sbjct: 66 FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125 Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438 +R+ R + D G +Y ++ HL V+C + D +Y+ D Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKD 185 Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV F D T+ I++ KLR GQ++ + KGIG Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 234 [219][TOP] >UniRef100_Q171Q8 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti RepID=Q171Q8_AEDAE Length = 335 Score = 86.7 bits (213), Expect = 1e-15 Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 11/176 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++ I +++ ++F++ + ++ANA RR+M+SEVP++AI+ V I N+S++ DE +AHR Sbjct: 45 QIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHR 104 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVTSKDLYS 432 LGLIPL RA F + D + ++EF L+VKC DST ++T+ D Sbjct: 105 LGLIPL---RADPRLFEYKTNENDPPNALD--TLEFELKVKCTKKNKDST-EITNNDSMY 158 Query: 433 SDHTV-------VPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGIG 576 +H++ +PV A+ + I+I K+R G E ++ A KGIG Sbjct: 159 KNHSIYSGQIKWIPVGNQASIYKEADVGPIDDDILISKMRPGHEFDIKLFAMKGIG 214 [220][TOP] >UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2 Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO Length = 346 Score = 86.7 bits (213), Expect = 1e-15 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 5/169 (2%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +K + + + FEL+ DA++ NALRR++ISEVPTVAI+ V+I N+ V+ DE +AHRL Sbjct: 61 LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120 Query: 265 GLIP-LTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTL--DVTSKDLYSS 435 GLIP + A+ R + + D + ++ L VKC T+ +L TS +Y+ Sbjct: 121 GLIPFIVDPTALNYR-QPNQEVTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYAK 172 Query: 436 DHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576 P+ S ++ + I+I KLR GQE+ L+A KG+G Sbjct: 173 HIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVG 221 [221][TOP] >UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE Length = 316 Score = 86.7 bits (213), Expect = 1e-15 Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 13/183 (7%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 + R + I D+ + FE+ + DA +AN+LRR+MI+E+PT+AI V++ N+SV+ DE Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86 Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTLD 408 +AHRLGLIP+ ++ ++F + D + E S++F L KC D ++ Sbjct: 87 VLAHRLGLIPIIAD---PLQF---IEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPIE 140 Query: 409 --VTSKDLYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 T+ ++SS P F+A V ++ III KLR+ QEL LR I K Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSN----IIIAKLRENQELNLRLICEK 196 Query: 568 GIG 576 G+G Sbjct: 197 GVG 199 [222][TOP] >UniRef100_B5IWT9 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus barophilus MP RepID=B5IWT9_9EURY Length = 258 Score = 86.7 bits (213), Expect = 1e-15 Identities = 64/165 (38%), Positives = 83/165 (50%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++K+ E ++D ++F L DA+ ANALRRV+I EVPT A+D VE N S L DE IAHR Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441 L +IPLT+ RF D D E+ + + + V S DL S D Sbjct: 62 LAMIPLTTPYD---RFELDALELD----------EYTVTLSLEAEGPGVVYSGDLKSDDP 108 Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V PV I IVKL +GQ+L L A A+ G G Sbjct: 109 DVKPVT--------------PNIPIVKLAEGQKLTLNAYAKLGRG 139 [223][TOP] >UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo salar RepID=B5X7Z3_SALSA Length = 353 Score = 86.3 bits (212), Expect = 2e-15 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 10/175 (5%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 R+ + ++ + ++F++ DA++ANA RR++++EVPT+A++ V I N+S++ DE +AHR Sbjct: 57 RIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHR 116 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423 LGLIP+ ++ R +A D +G E +++ L++KC + S D Sbjct: 117 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNPRATKDSADPRELYL 171 Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576 +YS D P+ A + G I++ +LR GQEL + KGIG Sbjct: 172 NHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQELDIVMHCVKGIG 226 [224][TOP] >UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH Length = 336 Score = 86.3 bits (212), Expect = 2e-15 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 16/174 (9%) Frame = +1 Query: 103 KDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 282 K+ ++F+L DA +ANALRR+MI+EVPT+AI V I N+S++ DE +AHRLGLIP+ Sbjct: 54 KNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIY 113 Query: 283 SERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--------MTDSTLDVTSKDLYSSD 438 ++ + + D E S++F L++KC +++ L+ + + Y + Sbjct: 114 ADPRLFEEKQEE------DEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLEN 167 Query: 439 HTVVPVDF----SAADSSSVETSDGR----GIIIVKLRKGQELRLRAIARKGIG 576 V DF + E + R II+ KLR+ QE+ I +KGIG Sbjct: 168 AIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIG 221 [225][TOP] >UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC Length = 344 Score = 86.3 bits (212), Expect = 2e-15 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 10/180 (5%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 + R ++ I L D M+F++ + ++ANA+RR++++EVPT+A D V + N+S++ DE Sbjct: 42 FERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDE 101 Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSK 420 +AHR+GL+P + M +D + D +VEF L+VKC + + D T+ Sbjct: 102 VLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPKDATTP 155 Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGR--------GIIIVKLRKGQELRLRAIARKGIG 576 D DH V + S G II+ KLR GQE+ L+ KG G Sbjct: 156 DELYKDHVVYTRHLTWTPIGSQAEIFGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTG 215 [226][TOP] >UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1 Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI Length = 291 Score = 86.3 bits (212), Expect = 2e-15 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +KI E + ++F+ D SVAN LRR+MI+EVPT+AI++V +E NSS + DE + HRL Sbjct: 8 IKISE-SPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66 Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444 GLIP+ ++ +F +D D E ++ F L V C DS + + +YSSD Sbjct: 67 GLIPILAD-PRKFKFPKDRHFTD---PTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLI 122 Query: 445 VVP---VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 P + + AD D I+I +L+ Q ++ + KGIG Sbjct: 123 WEPQGEQETTFADCPIKPVFD--DILIAELQPHQHIKCKLFCCKGIG 167 [227][TOP] >UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1 Tax=Taeniopygia guttata RepID=UPI000194C203 Length = 346 Score = 85.5 bits (210), Expect = 3e-15 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 15/180 (8%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV + ++D ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE +AHR Sbjct: 50 RVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423 LGLIP+ ++ R R D + + D +++F L++KC + S D Sbjct: 110 LGLIPIRADPRLFEYRNQGDQEGTEID------TLQFQLKIKCKRNPQAAKESSDPDELY 163 Query: 424 ----LYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +YS T VP+ F AD V I+I LR GQE+ + KGIG Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDD----ILIALLRPGQEIDVLMHCVKGIG 219 [228][TOP] >UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum RepID=UPI000175846B Length = 338 Score = 85.5 bits (210), Expect = 3e-15 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 10/175 (5%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV I +++ ++F+L +AN RR+M+S+VPT+AI+ V I N+S++ DE +AHR Sbjct: 44 RVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHR 103 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMT--DSTLD-VTSKDLY 429 LGLIPL ++ R M+ R +G E ++EF L++KC DS+ D + ++D+Y Sbjct: 104 LGLIPLKADPRLFEMKTDRKSSTAEG---TEQDTLEFALKIKCTNNKDSSKDSLRAEDMY 160 Query: 430 SSDHTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +++ VP+ S V I+I K+R G EL L+ +A K G Sbjct: 161 KNNNVYSKHIKWVPIGKQKERFSDVGPIH-PDILIAKMRPGHELDLKLLAVKSNG 214 [229][TOP] >UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1 Tax=Monodelphis domestica RepID=UPI0000F2C148 Length = 346 Score = 85.5 bits (210), Expect = 3e-15 Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 13/183 (7%) Frame = +1 Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246 + R RV + + ++ ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE Sbjct: 45 FEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDE 104 Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 +AHRLGLIP+ ++ R R D D + D +++F L+VKC + S D Sbjct: 105 ILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------TLQFQLKVKCTRNPQAAKDSSD 158 Query: 424 ---------LYSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 +Y+ T +P+ A + + D I+I +LR GQEL L K Sbjct: 159 PNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHD--DILIAQLRPGQELDLLMHCVK 216 Query: 568 GIG 576 GIG Sbjct: 217 GIG 219 [230][TOP] >UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7PPN8_ANOGA Length = 261 Score = 85.5 bits (210), Expect = 3e-15 Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 12/183 (6%) Frame = +1 Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243 S+ R ++ + ++ ++F++ ++AN RR+M+SEVP++AI+ V I N+S++ D Sbjct: 1 SFKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQD 60 Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVT 414 E +AHRLGLIPL ++ M + A + D ++EF L+VKC DST +VT Sbjct: 61 EVLAHRLGLIPLRADPRM-----FEYKANETDPPSALDTLEFELKVKCTRKNKDST-EVT 114 Query: 415 SKDLYSSDHTV-------VPVDFSAA--DSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567 + + +H++ VP+ A ++V D I+I K+R G E ++ A K Sbjct: 115 NNENMYKNHSIYSGQIKWVPIGNQATIYTEAAVGPIDD-DILISKMRPGHEFDIKLFAVK 173 Query: 568 GIG 576 G+G Sbjct: 174 GVG 176 [231][TOP] >UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2 Tax=Aspergillus RepID=B8NHK8_ASPFN Length = 373 Score = 85.5 bits (210), Expect = 3e-15 Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 18/170 (10%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERA 294 F L DAS+ANA RR++++EVP+VAI+ V + N+SV+ DE +A RLGLIPL + + Sbjct: 66 FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGI 125 Query: 295 MGMRFSRDC--DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDH 441 MR+ + D +G +Y ++ L ++C + D T D +Y+ D Sbjct: 126 NWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDI 185 Query: 442 TVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 T PV F+ D+ D I+I KLR GQ++ L KGIG Sbjct: 186 TFHPVGRQEQFFTGEDAIQPVNPD---ILIAKLRPGQKIDLEMHCIKGIG 232 [232][TOP] >UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella RepID=C8TDY9_EIMTE Length = 147 Score = 85.1 bits (209), Expect = 4e-15 Identities = 43/78 (55%), Positives = 60/78 (76%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +++ EL + ++F L + DAS+ANALRRVMISEVPT+AIDLV + N+SVL+DE+I HRL Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103 Query: 265 GLIPLTSERAMGMRFSRD 318 GL+P+ S +G +RD Sbjct: 104 GLLPIDSSN-VGNFVARD 120 [233][TOP] >UniRef100_B4KGY1 GI17014 n=1 Tax=Drosophila mojavensis RepID=B4KGY1_DROMO Length = 333 Score = 85.1 bits (209), Expect = 4e-15 Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 12/181 (6%) Frame = +1 Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249 +++ V +R ++ ++F+L ++ANA RR+M+SEVP++AI+ V I N+S++ DE Sbjct: 38 SKLQVVIVRNDEEHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97 Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKD 423 +AHR+GL+PL RA F+ D G E ++E+ L+VKC D++ D ++ D Sbjct: 98 LAHRMGLLPL---RADPRLFAYRTDESTDQG-TEQDTLEYELKVKCTRRKDASKDQSNFD 153 Query: 424 -------LYSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIARKGI 573 +YS +P A S E+S G I+I +LR G EL LR IA KGI Sbjct: 154 DIYRNHKVYSGHLKWLPKGKQAQIYS--ESSVGCIHEDILIAQLRPGHELDLRLIAVKGI 211 Query: 574 G 576 G Sbjct: 212 G 212 [234][TOP] >UniRef100_UPI00019261EE PREDICTED: similar to DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Hydra magnipapillata RepID=UPI00019261EE Length = 354 Score = 84.7 bits (208), Expect = 5e-15 Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 16/181 (8%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++ + +L + M+F++ DAS+ANA RR++I+EVPT+AI+ V I N++++ DE +AHR Sbjct: 48 KIDVIKLNQNEMEFDMIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHR 107 Query: 262 LGLIPLTSE----RAMGMRFSRDCDACDGDGQC--EYCSVEFHLRVKCMTD--STLDVTS 417 LGLIP+ ++ + + D + E+ + F L++KC + ++ D T Sbjct: 108 LGLIPILADPREFNFPPAKLEDESKLTDEERLAVDEHHHLVFELKIKCSKNPKASSDATD 167 Query: 418 KDLYSSDHTV-------VPVDFSAAD-SSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 D+ ++ V +P+ A S+++ I+I KLR GQEL +R KGI Sbjct: 168 PDVLYLNNKVMTKHMKWIPIGRQAEKFSTNIVRPVFDDILIAKLRPGQELDIRMHCVKGI 227 Query: 574 G 576 G Sbjct: 228 G 228 [235][TOP] >UniRef100_UPI00017936CF PREDICTED: similar to DNA-directed RNA polymerase n=1 Tax=Acyrthosiphon pisum RepID=UPI00017936CF Length = 325 Score = 84.7 bits (208), Expect = 5e-15 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 ++ I D+ ++F+L D +VAN+LRRV+ISEVP++AI+ V I N+S + DE +AHR Sbjct: 33 KINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHR 92 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV------TSK 420 LGLIPL ++ R M+ + + + D S+ + +++KC T LD S Sbjct: 93 LGLIPLKADPRQFKMKEDENSEPNEHD------SLVYEMKIKC-TKKDLDALAHKQFISF 145 Query: 421 DLYSSDHTVVPV----DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573 +Y+ +P+ D + + D I+I KLR GQE+ L+ A KGI Sbjct: 146 PVYAKHIKWLPLGNQKDIFTEKDVGIISDD---ILIAKLRPGQEIELKMFAVKGI 197 [236][TOP] >UniRef100_Q29L21 GA17664 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29L21_DROPS Length = 333 Score = 84.7 bits (208), Expect = 5e-15 Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 11/176 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V I +D ++F++ ++ANA RR+M+SEVP++AI+ V I N+S++ DE +AHR Sbjct: 42 QVAIVRNDEDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHR 101 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYS 432 +GL+PL ++ R R G+ E ++E+ L+VKC D++ D ++ D Sbjct: 102 MGLLPLKADPRLFAYRTEE-----SGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIY 156 Query: 433 SDHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +H V +P A S S+ I+I +LR G EL LR +A KG+G Sbjct: 157 KNHKVYSGHLKWLPKGKQAQIYSESMVNCIHEDILIAQLRPGHELDLRLVAVKGLG 212 [237][TOP] >UniRef100_A8Q352 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8Q352_MALGO Length = 270 Score = 84.7 bits (208), Expect = 5e-15 Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 14/136 (10%) Frame = +1 Query: 205 LVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRV 381 +VEI +N++VL DEF+AHRLG+IPL S + A + R+C DG C+ CSVE L Sbjct: 1 MVEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDG---CDRCSVELSLDA 57 Query: 382 KCMTD-STLDVTSKDL---------YSSDHTVVPVDFSAADSSSVETSD---GRGIIIVK 522 C +D + VTSKDL YS + PV D D G++IV+ Sbjct: 58 LCTSDRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFGKPVGQDDPNANGVVIVQ 117 Query: 523 LRKGQELRLRAIARKG 570 LRKGQ ++ R IARKG Sbjct: 118 LRKGQHIKARCIARKG 133 [238][TOP] >UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1 Tax=Gallus gallus RepID=UPI00003ACD10 Length = 346 Score = 84.3 bits (207), Expect = 6e-15 Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 15/180 (8%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV + +D ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE +AHR Sbjct: 50 RVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109 Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423 LGLIP+ ++ R R D + + D +++F L++KC + S D Sbjct: 110 LGLIPIRADPRLFEYRNQGDEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELY 163 Query: 424 ----LYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +YS T VP+ F AD V I+I LR GQE+ + KGIG Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDD----ILIALLRPGQEIDVLMHCVKGIG 219 [239][TOP] >UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1 Tax=Vitis vinifera RepID=A7Q9B1_VITVI Length = 362 Score = 84.3 bits (207), Expect = 6e-15 Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 17/182 (9%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 RV++ L +D M+F++ D S+ANA RR++I+E+PT+AI+ V I N+S++ DE +AHR Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTL-----D 408 LGLIP+ ++ + F D + D E ++ F+L V+C +T + Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTGMVIVLCIYA 179 Query: 409 VTSKDLYSSDHTVVPVDFSAADSSSVETSDGR------GIIIVKLRKGQELRLRAIARKG 570 V + + S++ +P + S E SD III KL GQE+ L A A KG Sbjct: 180 VLNNAVKSNELKWLP--HGSDQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKG 237 Query: 571 IG 576 +G Sbjct: 238 MG 239 [240][TOP] >UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina RepID=B2A971_PODAN Length = 372 Score = 84.3 bits (207), Expect = 6e-15 Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 17/169 (10%) Frame = +1 Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG 300 F L DAS+ANA RR+MI++VPT+AI+ V + N+SV+ DE +AHRLGLIP T R Sbjct: 66 FSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGREGL 125 Query: 301 MRFSR-DCDACDGD-GQC-EYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDHT 444 F + +GD +C ++ +V L VKC + D D +Y+ D Sbjct: 126 TDFLKWYRKPANGDPAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKDIV 185 Query: 445 VVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 P+ FS D D I+I KLR GQE+ ++ KG+G Sbjct: 186 FKPIGRQVDYFSGEDIIRPVNPD---ILIAKLRPGQEINVQMHMHKGVG 231 [241][TOP] >UniRef100_Q10MU3 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein, expressed n=1 Tax=Oryza sativa Japonica Group RepID=Q10MU3_ORYSJ Length = 352 Score = 84.0 bits (206), Expect = 8e-15 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 19/184 (10%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V + L +D M+F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426 LGLIPL ++ + S + D E ++ + L V C S L V S DL Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186 Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564 S D FS + +E G + I I +L GQ + L A Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246 Query: 565 KGIG 576 KGIG Sbjct: 247 KGIG 250 [242][TOP] >UniRef100_Q10MU2 Os03g0295400 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10MU2_ORYSJ Length = 379 Score = 84.0 bits (206), Expect = 8e-15 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 19/184 (10%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V + L +D M+F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426 LGLIPL ++ + S + D E ++ + L V C S L V S DL Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186 Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564 S D FS + +E G + I I +L GQ + L A Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246 Query: 565 KGIG 576 KGIG Sbjct: 247 KGIG 250 [243][TOP] >UniRef100_B4NW96 GE11271 n=1 Tax=Drosophila yakuba RepID=B4NW96_DROYA Length = 333 Score = 84.0 bits (206), Expect = 8e-15 Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 11/182 (6%) Frame = +1 Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243 +Y +KI + +D ++F+L ++ANA RR+M+S+VP++AI+ V I N+S++ D Sbjct: 36 AYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQD 95 Query: 244 EFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVT 414 E +AHR+GL+PL ++ R R +A E ++EF L+VKC D+ D + Sbjct: 96 EVLAHRMGLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQS 150 Query: 415 SKDLYSSDHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570 + D +H V +P A + S I+I +LR G EL LR +A KG Sbjct: 151 NFDDIYKNHKVYSGHLKWLPKGKQAQIYNESAVNCIHDDILIAQLRPGHELDLRLVAVKG 210 Query: 571 IG 576 +G Sbjct: 211 LG 212 [244][TOP] >UniRef100_B4LUA3 GJ24400 n=1 Tax=Drosophila virilis RepID=B4LUA3_DROVI Length = 333 Score = 84.0 bits (206), Expect = 8e-15 Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 10/179 (5%) Frame = +1 Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249 +++ V +R +++ ++F+L ++ANA RR+M+SEVP++AI+ V I N+S++ DE Sbjct: 38 SKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97 Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKD 423 +AHR+GL+PL RA F+ + G E ++E+ L+VKC D++ D ++ D Sbjct: 98 LAHRMGLLPL---RADPRLFAYRTEESTEQG-TEQDTLEYELKVKCTRRKDASKDQSNFD 153 Query: 424 LYSSDHTVVPVDFS---AADSSSVETSDGRG-----IIIVKLRKGQELRLRAIARKGIG 576 +H V + T + G I+I +LR G EL LR IA KG+G Sbjct: 154 DIYKNHKVYSGHLKWLPKGKQGQIYTENSVGCIHEDILIAQLRPGHELDLRLIAVKGLG 212 [245][TOP] >UniRef100_B3N4C9 GG25034 n=1 Tax=Drosophila erecta RepID=B3N4C9_DROER Length = 329 Score = 84.0 bits (206), Expect = 8e-15 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +KI + +D ++F+L ++ANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+ Sbjct: 39 IKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 98 Query: 265 GLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYSS 435 GL+PL ++ R R +A E ++EF L+VKC D+ D ++ D Sbjct: 99 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 153 Query: 436 DHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +H V +P A S S I+I +LR G EL LR +A KG+G Sbjct: 154 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLG 208 [246][TOP] >UniRef100_Q0UUA6 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0UUA6_PHANO Length = 350 Score = 84.0 bits (206), Expect = 8e-15 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 20/185 (10%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +VK F L D SVANA RR++++E+PT+AI+ V I N+S++ DE +AHR Sbjct: 27 KVKFHTHSPHDTSFSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQNTSIIQDEVLAHR 86 Query: 262 LGLIPLTSERAMGMR----FSRDCDACDGDG-QCEYCSVEFHLRVKCM------------ 390 LGLIPL G+R + ++ D +G G +Y +V L V+C Sbjct: 87 LGLIPLCGSH-KGLRWLKWYKKETDDDEGSGTPSDYNTVIMKLDVECSWQEGGLQRAVQG 145 Query: 391 -TDSTLDVTSKDLYSSDHTVVPV--DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIA 561 TD ++Y+ D P+ F S + I+IVK+R GQ+++L A Sbjct: 146 ETDPDKLYIGHNVYAKDLVWEPLGKQFDEFPSGEEIRATNPDILIVKMRPGQKIQLSMHA 205 Query: 562 RKGIG 576 KGIG Sbjct: 206 IKGIG 210 [247][TOP] >UniRef100_C5A249 DNA-directed RNA polymerase subunit D (RpoD) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A249_THEGJ Length = 260 Score = 84.0 bits (206), Expect = 8e-15 Identities = 62/166 (37%), Positives = 82/166 (49%) Frame = +1 Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258 P+ +I E ++D +KF LR D ANALRR +++EVPT A+D VE N S L DE IAH Sbjct: 3 PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62 Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438 RL +IPLT+ RFS D D ++ + + + V S DL S D Sbjct: 63 RLAMIPLTTPVE---RFSLDALELD----------DYTVTLSLQAEGPGMVYSGDLKSDD 109 Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 V P + I IVKL +GQ+L A A+ G G Sbjct: 110 EGVKPAN--------------PNIPIVKLAEGQKLTFNAYAKLGRG 141 [248][TOP] >UniRef100_UPI000186EDAD DNA-directed RNA polymerase I 40 kDa polypeptide, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186EDAD Length = 347 Score = 83.6 bits (205), Expect = 1e-14 Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 11/176 (6%) Frame = +1 Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261 +V I +L D M+F+L + +VANA RR+++SEVP++AI+ V + N++++ DE +AHR Sbjct: 44 KVVIVKLNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHR 103 Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS---KDLYS 432 LGL+PL ++ + S + + + E ++EF L++KC + S DLY Sbjct: 104 LGLVPLKADSRLFEYRSENSNEPN-----EQDTLEFELKIKCSVNKEGHKNSYQIDDLY- 157 Query: 433 SDHTVVP-----VDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIARKGIG 576 +H+V V + ++ E + G I++ KLR GQEL L+ A KG+G Sbjct: 158 INHSVYSKHLKWVPIGSQGTTYDEKNIGPVLPDILLNKLRPGQELDLKLHAVKGLG 213 [249][TOP] >UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TAS0_SOYBN Length = 388 Score = 83.6 bits (205), Expect = 1e-14 Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 23/194 (11%) Frame = +1 Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243 S+ +V+++ L D ++F++ D ++ANA RR++I+EVPT+AI+ V I N+SV+ D Sbjct: 76 SFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQD 135 Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423 E ++HRLGLIP+ ++ + F +A GD + E ++ F L V+C D Sbjct: 136 EVLSHRLGLIPIRADPRL---FEYPENA--GDDKNEKNTIVFKLHVRCQVGQPRITVKSD 190 Query: 424 L--YSSDHTVVPVD---------------FSAADSSSVETSDGR------GIIIVKLRKG 534 + + + +P + F+ + S E S+ II+ KL G Sbjct: 191 KLKWLPNGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPG 250 Query: 535 QELRLRAIARKGIG 576 QE+ L A A KGIG Sbjct: 251 QEIELEAHAVKGIG 264 [250][TOP] >UniRef100_Q9VMX3 CG3756 n=1 Tax=Drosophila melanogaster RepID=Q9VMX3_DROME Length = 333 Score = 83.6 bits (205), Expect = 1e-14 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%) Frame = +1 Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264 +KI +D ++F+L ++ANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+ Sbjct: 43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102 Query: 265 GLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYSS 435 GL+PL ++ R R +A E ++EF L+VKC D+ D ++ D Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157 Query: 436 DHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576 +H V +P A S S I+I +LR G EL LR +A KG+G Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLG 212