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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 310 bits (794), Expect = 5e-83
Identities = 159/175 (90%), Positives = 163/175 (93%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRVKC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+SKDL SSDHTV PVD D+S SDGRGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASI--ESDGRGIIIVKLRRGQELRLRAIARKGIG 173
[2][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 308 bits (788), Expect = 3e-82
Identities = 155/175 (88%), Positives = 164/175 (93%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
MEGASY R PR+KIRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1 MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQC+YCSVEFHLR KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TSKDLYSSDHTVVPVDFS DSS ++S+ RGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLYSSDHTVVPVDFS--DSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIG 173
[3][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
Tax=Medicago sativa RepID=Q45NH1_MEDSA
Length = 184
Score = 301 bits (770), Expect = 3e-80
Identities = 155/170 (91%), Positives = 160/170 (94%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPT+AIDLVEIEVNSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL 426
FIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRVKC+TD TLDV+SKDL
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120
Query: 427 YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
SSDHTV PVD D +SVE SDGRGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 ISSDHTVTPVDVPGGD-ASVE-SDGRGIIIVKLRRGQELRLRAIARKGIG 168
[4][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 300 bits (767), Expect = 7e-80
Identities = 150/175 (85%), Positives = 162/175 (92%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
MEG SY R P++KIRE+KDDY KFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KCMTD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TSKDL SSDHTVVPVDFS DSS +++D +GIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLISSDHTVVPVDFS--DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIG 173
[5][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 300 bits (767), Expect = 7e-80
Identities = 150/175 (85%), Positives = 162/175 (92%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
MEG SY R P++KIRE+KDDY KFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KCMTD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TSKDL SSDHTVVPVDFS DSS +++D +GIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLISSDHTVVPVDFS--DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIG 173
[6][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 294 bits (752), Expect = 4e-78
Identities = 147/178 (82%), Positives = 159/178 (89%), Gaps = 3/178 (1%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
ME SY R P++KIRE+KDDY+KFELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1 MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLR KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDF---SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TSKDLYSSDH V+PVDF S A+ T RGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIG 178
[7][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 283 bits (725), Expect = 5e-75
Identities = 142/175 (81%), Positives = 159/175 (90%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+GA+Y R P++KIRELKDDY KFELR+TD S+ANALRRVMISEVPTVAIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEF L KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS+DLYS+D TV PVDF+ DSS ++S+ +GIIIVKLR+GQEL+LRAIARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIG 174
[8][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 280 bits (717), Expect = 4e-74
Identities = 141/175 (80%), Positives = 158/175 (90%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+GA+Y R P++KIRELKDDY KFELR+TD S+ANALRRVMISEVPTVAIDLVEIEVNSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIAHRLGLI LTSERAM MRFSRDCDACDGDGQCE+CSVEF L KC+TD TLDV
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS+DLYS+D TV PVDF+ DSS ++S+ +GIIIVKLR+GQEL+LRAIARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIG 174
[9][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 264 bits (675), Expect = 3e-69
Identities = 130/177 (73%), Positives = 152/177 (85%), Gaps = 2/177 (1%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+ SY R P V+IR++KDD +KFELRDTDAS+ANALRR+MI+EVPT+AIDLVEIE NSS
Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEF+AHRLGLIP+ S+RAM MR SRDCDACDGDG+CEYCS+EFHL VKC D TLDV
Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFS--AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS DL SSD +++PVD + AAD E++D RGI+IVKLRKGQEL+LRAIARKGIG
Sbjct: 121 TSLDLVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIG 177
[10][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 253 bits (645), Expect = 1e-65
Identities = 126/175 (72%), Positives = 151/175 (86%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+G +Y R P VKIRELKDDY KFELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIA RL LIPLTSERAM MRF +DC+ C+GD CE+CSVEF L KC+TD TLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS+DLYS+D TV PVDF+ ++SS+ ++S+ +GIII KLR+GQEL+L+A+ARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIG 174
[11][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 253 bits (645), Expect = 1e-65
Identities = 126/175 (72%), Positives = 151/175 (86%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+G +Y R P VKIRELKDDY KFELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VLNDEFIA RL LIPLTSERAM MRF +DC+ C+GD CE+CSVEF L KC+TD TLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS+DLYS+D TV PVDF+ ++SS+ ++S+ +GIII KLR+GQEL+L+A+ARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIG 174
[12][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 252 bits (644), Expect = 1e-65
Identities = 134/183 (73%), Positives = 146/183 (79%), Gaps = 10/183 (5%)
Frame = +1
Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
G SY R PRV+IRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 7 GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66
Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL + +D TL+VT
Sbjct: 67 NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126
Query: 415 SKDLYSSDHTVVPVDFSAA---------DSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
S DL S+D V PVD + A + +D RGI+IVKLR+GQELRLRAIARK
Sbjct: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186
Query: 568 GIG 576
GIG
Sbjct: 187 GIG 189
[13][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 251 bits (642), Expect = 2e-65
Identities = 136/183 (74%), Positives = 147/183 (80%), Gaps = 10/183 (5%)
Frame = +1
Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
GASY R PRV+IR+LKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 6 GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL + +D TL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 125
Query: 415 SKDLYSSDHTVVPVDFSAA--------DSSSVETS-DGRGIIIVKLRKGQELRLRAIARK 567
S DL S D V PVD + A D TS + RGI+IVKLR+GQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQELRLRAIARK 185
Query: 568 GIG 576
GIG
Sbjct: 186 GIG 188
[14][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 251 bits (640), Expect = 4e-65
Identities = 134/183 (73%), Positives = 147/183 (80%), Gaps = 10/183 (5%)
Frame = +1
Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
G SY R PRV+IRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 6 GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65
Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414
NDEFIAHRLGLIPLTS AM MRFSRDCDACDGDG CEYCSVEFHL V +D TL+VT
Sbjct: 66 NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125
Query: 415 SKDLYSSDHTVVPVDFSAADSSSV---------ETSDGRGIIIVKLRKGQELRLRAIARK 567
S DL S D V PVD + A ++ +++ RGI+IVKLR+GQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185
Query: 568 GIG 576
GIG
Sbjct: 186 GIG 188
[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 178 bits (452), Expect = 2e-43
Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
Frame = +1
Query: 58 GASYARMPRVKIRELKD--DYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
G SY R+P V I E + ++F+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17 GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VL DEFIAHRLGLIPLTS+RAM M F +CD+C GD C+ C+VEF L VK D DV
Sbjct: 77 VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T +DL SS+ VVPV+ D V I I KL KGQE+ LRA+A+KG+G
Sbjct: 137 TQRDLKSSNDAVVPVEID-VDKQGVLEECKMDICIAKLYKGQEITLRALAKKGMG 190
[16][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E4A699
Length = 275
Score = 171 bits (433), Expect = 4e-41
Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P +++ EL DD +KF + DTD SVAN++RR +++EVPT+AID VEI+ NSSVL+DE
Sbjct: 3 YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FI+HR+GLIPLTS+ + + F+RDC + C CSVE L VKC D T VTS+D
Sbjct: 63 FISHRVGLIPLTSDEVVDKLNFNRDCGC---EEFCSDCSVELSLDVKCTDDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ VVPV +SS D I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LLSSNQKVVPVPSRNQESSDYGEVD--DILIVKLRKGQELRLRAYAKKGFG 168
[17][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
rerio RepID=Q7ZV11_DANRE
Length = 275
Score = 171 bits (433), Expect = 4e-41
Identities = 91/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170
[18][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
Length = 275
Score = 171 bits (432), Expect = 5e-41
Identities = 93/171 (54%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[19][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
RepID=UPI000001AB34
Length = 275
Score = 170 bits (430), Expect = 8e-41
Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPLTS+ + +++SRDC D C CSVE L V+C D T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCSECSVELTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFG 170
[20][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
Tax=Antheraea pernyi RepID=Q76L19_ANTPE
Length = 275
Score = 170 bits (430), Expect = 8e-41
Identities = 91/171 (53%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL DD +KF + DT+ SVAN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L VKC D T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCAD---FCSECSVEFTLDVKCTDDQTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SSD VVPV D + + I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQELKLRAYAKKGFG 170
[21][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
RepID=UPI00003AA556
Length = 275
Score = 169 bits (429), Expect = 1e-40
Identities = 92/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFG 170
[22][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
(Silurana) tropicalis RepID=Q6P7Y7_XENTR
Length = 275
Score = 169 bits (429), Expect = 1e-40
Identities = 91/171 (53%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + +++SRDC D C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[23][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
Length = 275
Score = 169 bits (429), Expect = 1e-40
Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPLTS+ + +++SRDC D C CSVE L V+C D T VTS+D
Sbjct: 63 FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFG 170
[24][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
Length = 275
Score = 169 bits (428), Expect = 1e-40
Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V++ EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + +++SRDC D C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[25][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI00019253CC
Length = 273
Score = 169 bits (427), Expect = 2e-40
Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA PRVKI E DD +KF L +TD SVAN+LRR+ I+EVPT+AID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 247 FIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L VKC ++T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S D V+PV D + ET + I+IVKLRKGQEL+L A A+KG G
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFG 169
[26][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
magnipapillata RepID=UPI0001925380
Length = 289
Score = 169 bits (427), Expect = 2e-40
Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA PRVKI E DD +KF L +TD SVAN+LRR+ I+EVPT+AID V+IE N+SVL+DE
Sbjct: 3 YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62
Query: 247 FIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS E+ M +SRDC + C+ CSV+F L VKC ++T VTS+D
Sbjct: 63 FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S D V+PV D + ET + I+IVKLRKGQEL+L A A+KG G
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFG 169
[27][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BL52_OSMMO
Length = 275
Score = 169 bits (427), Expect = 2e-40
Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD +VAN++RRV +SEV T+AID ++I+ NSSVL+DE
Sbjct: 3 YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ V+PV + D+ + + II+VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQELRLRAYAKKGFG 170
[28][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z918_BRAFL
Length = 275
Score = 168 bits (426), Expect = 2e-40
Identities = 89/169 (52%), Positives = 119/169 (70%), Gaps = 1/169 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P+V + EL D+ +KF + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE
Sbjct: 3 YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + M++SRDC + C C++E L VKC D T VT++D
Sbjct: 63 FIAHRVGLIPLTSDDIVDRMQYSRDCTCAE---FCADCAIELTLDVKCTDDQTRHVTTRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
L SS+ VVPV A+ + + I+IVKLRKGQEL+LRA A+KG
Sbjct: 120 LISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQELKLRAFAKKG 168
[29][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
salmonis RepID=C1BV58_9MAXI
Length = 279
Score = 168 bits (426), Expect = 2e-40
Identities = 93/170 (54%), Positives = 120/170 (70%), Gaps = 2/170 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P + I EL +D +KF L DTD SVANA+RRVMI+E P +AID V++E NS+VL+DE
Sbjct: 3 YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLG+IPLTS+ A+ M++SRDC D C C+VEF L VKC ++T +VTS D
Sbjct: 63 FIAHRLGMIPLTSDDAVDSMQYSRDCTCTD---FCRECAVEFTLDVKCHEETTRNVTSAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVE-TSDGRGIIIVKLRKGQELRLRAIARKG 570
L SSD V+PV + E ++ I+IVKLRKGQEL++RA A+KG
Sbjct: 120 LKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRAYAKKG 169
[30][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
RepID=UPI00005EAD58
Length = 275
Score = 167 bits (424), Expect = 4e-40
Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV + D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[31][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
RepID=Q1HQ43_BOMMO
Length = 275
Score = 167 bits (424), Expect = 4e-40
Identities = 90/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL D+ +KF + DT+ SVAN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + +R+SRDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SSD VVPV D + + I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFG 170
[32][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
RepID=C1BXW0_ESOLU
Length = 275
Score = 167 bits (423), Expect = 5e-40
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170
[33][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5XBM8_SALSA
Length = 275
Score = 167 bits (423), Expect = 5e-40
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L V+C D T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170
[34][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
scapularis RepID=B7QL55_IXOSC
Length = 274
Score = 167 bits (423), Expect = 5e-40
Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL D+ +KF + DTD SVAN+LRRV I+EV T+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF + VKC+ + T VT+ D
Sbjct: 63 FIAHRLGLIPLTSDEIVDKMQYSRDCTCAD---FCTECSVEFTIDVKCLDEQTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SSD VVPV D ++ E + I+IVKLRKGQE++ RA A+KG G
Sbjct: 120 LKSSDPRVVPVTSRHKDDTN-EYGETDDILIVKLRKGQEVKARAYAKKGFG 169
[35][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
Length = 273
Score = 167 bits (422), Expect = 7e-40
Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL D +KF++ DTD SVAN+LRRV I+E PT+AID V+++ NS+VL+DE
Sbjct: 3 YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIA R+GLIPLTS+ + +++SRDC D C CSVEF+L VKC + T VT+ D
Sbjct: 63 FIASRIGLIPLTSDEIVDRLQYSRDCTCSD---FCHDCSVEFNLHVKCSEEMTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S++ VVPV DS E + I+I+KLRKGQEL++RA A+KG G
Sbjct: 120 LVSNNPRVVPVTSRNQDSDINEYGEKDDILIIKLRKGQELKIRAFAKKGFG 170
[36][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186DA34
Length = 275
Score = 166 bits (421), Expect = 9e-40
Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I +L D+ +KF++ DT+ SVAN++RRV I+E PT+AID V++E NS+VL DE
Sbjct: 3 YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FI+HR+GLIPLTS+ + ++++RDC D C CSVEF L VKC D T VT+ D
Sbjct: 63 FISHRVGLIPLTSDEVVDRIQYTRDCTCLD---FCPECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SSD V+PV + + E + I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQELKLRAYAKKGFG 170
[37][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
Tax=Tribolium castaneum RepID=UPI0000D5785C
Length = 274
Score = 166 bits (421), Expect = 9e-40
Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I +L DD +KF + DTD SVAN++RRV+I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + +++ RDC D C CSVEF L VKC D T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVQRLQYPRDCICTD---FCHECSVEFTLDVKCTDDHTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SSD V+P D S E D I+I+KLRKGQEL+++A A+KG G
Sbjct: 120 LKSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQELKVKAYAKKGFG 170
[38][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
Length = 274
Score = 166 bits (421), Expect = 9e-40
Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + T S+AN LRR+ I+E PT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGL+PLTS+ + M FSRDC D C+ CS+EF L VKC DST VT++D
Sbjct: 63 FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
L S++ VPV + S E + I+IVKLRKGQEL+LRA A+KG
Sbjct: 120 LISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQELKLRAFAKKG 168
[39][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
RepID=RPB3_BOVIN
Length = 275
Score = 166 bits (421), Expect = 9e-40
Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[40][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
RepID=B5X5T8_SALSA
Length = 275
Score = 166 bits (419), Expect = 2e-39
Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE
Sbjct: 3 YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIPLTS+ + M++SRDC D C CSVE L +C D T VTS+D
Sbjct: 63 FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDARCTEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV + D+ + + I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170
[41][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 166 bits (419), Expect = 2e-39
Identities = 91/168 (54%), Positives = 115/168 (68%)
Frame = +1
Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
R P ++I E+K+D + F L +TD SVANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
AHRLGLIPL S+ ++RDC D +C+ CSVE L VKC + DVTS DL S
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+ V+PV S+S + I IVKLR+GQE++LRAIA+KG+G
Sbjct: 127 QNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVG 169
[42][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
RepID=UPI0000DC0B4D
Length = 330
Score = 165 bits (417), Expect = 3e-39
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[43][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
musculus RepID=UPI00016D3816
Length = 302
Score = 165 bits (417), Expect = 3e-39
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[44][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q9DB22_MOUSE
Length = 275
Score = 165 bits (417), Expect = 3e-39
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[45][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
RepID=Q99M46_MOUSE
Length = 275
Score = 165 bits (417), Expect = 3e-39
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[46][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
RepID=Q3UUX3_MOUSE
Length = 332
Score = 165 bits (417), Expect = 3e-39
Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[47][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
Length = 276
Score = 164 bits (415), Expect = 5e-39
Identities = 87/171 (50%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL ++ +KF++ DT+ SVAN++RRV I+E PT+AID V+IE NS+VL+DE
Sbjct: 3 YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+G+IPL S+ + ++++RDC D C C VEF L VKC ++T VT+ D
Sbjct: 63 FLAHRIGMIPLISDEVVDRIQYTRDCQCMD---FCPECCVEFTLDVKCSDETTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ VVPV D + E + I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQELKLRAYAKKGFG 170
[48][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
Length = 257
Score = 164 bits (415), Expect = 5e-39
Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[49][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z6D1_HUMAN
Length = 424
Score = 164 bits (415), Expect = 5e-39
Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[50][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
RepID=RPB3_HUMAN
Length = 275
Score = 164 bits (415), Expect = 5e-39
Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[51][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
RepID=UPI00006A469F
Length = 277
Score = 163 bits (412), Expect = 1e-38
Identities = 86/171 (50%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
+A P V I EL +D +KF + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE
Sbjct: 3 FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F++HR+GLIPLTS+ + +++SRDC D C+ CSVEF+L VKC + T VT++D
Sbjct: 63 FLSHRIGLIPLTSDDVVDKIQYSRDCMC---DDFCQDCSVEFYLDVKCTGEGTRQVTTRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S + VVP+ + SS + I+I KLRKGQ L+ +A A+KG G
Sbjct: 120 LISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAFAKKGFG 170
[52][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
(DNA directed) polypeptide C, 33kDa(POLR2C), transcript
variant gamma, n=1 Tax=Macaca fascicularis
RepID=Q4R533_MACFA
Length = 251
Score = 162 bits (410), Expect = 2e-38
Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L + V+PV D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LIPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[53][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
RepID=Q16XU4_AEDAE
Length = 275
Score = 162 bits (409), Expect = 2e-38
Identities = 91/172 (52%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL D+ +KF + DTD SV N+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVERMQYSRDCTCLD---FCTECSVEFTLDVKCNDEHTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
L SSD V+PV D E +G I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRAYAKKGFG 171
[54][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
Length = 273
Score = 161 bits (407), Expect = 4e-38
Identities = 90/172 (52%), Positives = 116/172 (67%), Gaps = 2/172 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I EL D+ +KF + DT+ SVAN+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3 YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + M++SRDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRVGLIPLISDEVVDRMQYSRDCPCLD---FCNECSVEFTLDVKCNEEHTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
L SSD V+PV D E +G I+I+KLRKGQEL+L+A A+KG G
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFG 171
[55][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
Length = 276
Score = 160 bits (406), Expect = 5e-38
Identities = 84/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I +L ++ +KF++ DT+ SVAN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3 YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+G+IPL S+ + ++++RDC D C CSVEF L VKC D T VT+ D
Sbjct: 63 FLAHRIGMIPLISDDVVDRIQYTRDCQCMD---FCPECSVEFTLDVKCTEDQTRHVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
SSD V+PV + + E + I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFG 170
[56][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
Length = 275
Score = 160 bits (404), Expect = 9e-38
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L +S+ V+PV + D+ E+SD I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKTSNPKVLPVTSRNQGEEDNEYGESSD--EILIIKLRKGQELKLRAYAKKGFG 171
[57][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
melanogaster RepID=O97183_DROME
Length = 275
Score = 159 bits (403), Expect = 1e-37
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171
[58][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
Length = 275
Score = 159 bits (403), Expect = 1e-37
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171
[59][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
Length = 275
Score = 159 bits (403), Expect = 1e-37
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171
[60][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3RV95_TRIAD
Length = 274
Score = 159 bits (403), Expect = 1e-37
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA PRV I +L ++ +KF L +TD SVAN+LRR+ I+ VPT+AID V+ N+SVL+DE
Sbjct: 3 YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLT + + +++SRDC+ + C CSVEF L V+C D T VT++D
Sbjct: 63 FIAHRLGLIPLTCDEVIDRLQYSRDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SSD VVPV + +V I+I KLR+GQE++++A A+KG+G
Sbjct: 120 LISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLG 170
[61][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
Length = 275
Score = 159 bits (402), Expect = 1e-37
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESTD--EILIIKLRKGQELKLRAYAKKGFG 171
[62][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
Length = 275
Score = 159 bits (402), Expect = 1e-37
Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPVDF---SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V+PV D+ E++D I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRHQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171
[63][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
Length = 275
Score = 159 bits (401), Expect = 2e-37
Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
F+AHR+GLIPL S+ + ++++RDC D C CSVEF L VKC + T VT+ D
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119
Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V+PV + D+ E++D I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171
[64][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 158 bits (400), Expect = 3e-37
Identities = 85/171 (49%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V I L D+ ++F L DTD SVAN+LRR+ ++EVPT+AID V+IE NSSVL+DE
Sbjct: 3 YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + M+FSRDC + C++C+VE LRV+C + VT+ D
Sbjct: 63 FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L +S+ V P + + E + I+IVKLRKGQ++ ++ IA+KG G
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFG 170
[65][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
RepID=RPB3_MOUSE
Length = 275
Score = 158 bits (400), Expect = 3e-37
Identities = 88/171 (51%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L S+ V+PV D+ + + I+IVKLRKGQELRLRA +K G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSG 170
[66][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2GNN7_CHAGB
Length = 338
Score = 152 bits (385), Expect = 1e-35
Identities = 83/165 (50%), Positives = 108/165 (65%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P VKI + +KFEL + D + AN+LRRVM+ E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL ++ G+ F+RDCD DG CE+CSV L KC D + V ++DL +
Sbjct: 76 RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTG 132
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ V + V S+G G +I+KLR GQE++L IA+KGI
Sbjct: 133 ERINQV----LGTPVVSDSEGLGALILKLRPGQEIKLECIAKKGI 173
[67][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
Length = 337
Score = 152 bits (383), Expect = 2e-35
Identities = 83/165 (50%), Positives = 110/165 (66%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P VKI + + +KFEL +T+ S AN+LRRVM++E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL +E + +SRDCD D CE+CSV +L KC D + V ++DL
Sbjct: 76 RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V V S + +G+G +I+KLR GQE++L+ IA+KGI
Sbjct: 133 DRVNQV----LGSPIINDPEGQGPLILKLRHGQEIKLQCIAKKGI 173
[68][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
Length = 266
Score = 150 bits (379), Expect = 7e-35
Identities = 87/171 (50%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V + ++ +KF L +TD SVANA+RRV I+EVPT+AID V+IE N+++LNDE
Sbjct: 3 YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIA R+GLIPLT + + M + R+C + CE CSVE L V C TD+ VT D
Sbjct: 63 FIAQRVGLIPLTCDNVVDKMTYFRECPCRE---FCEQCSVELTLDVCCTTDAPRHVTGAD 119
Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L SS+ V PV AD SS + I+IVK+RKGQ L+LRAIA+KG G
Sbjct: 120 LISSNRDVQPVPSRDADESSYVGQE--SILIVKMRKGQRLKLRAIAKKGFG 168
[69][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
Length = 282
Score = 150 bits (378), Expect = 9e-35
Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 7/177 (3%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIP S+ M+++RDC+ + C+ CS+ F L++KC ++TL VT++
Sbjct: 63 FIAHRMGLIPFISDYHVEKMQYTRDCECAE---FCDECSIPFILQMKCKDEATLAVTTEH 119
Query: 424 L---YSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L ++ D TV P A S+ E + I+IVKLRKGQEL L+A +KG G
Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFG 176
[70][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
RepID=A3GF98_PICST
Length = 315
Score = 147 bits (370), Expect = 8e-34
Identities = 83/165 (50%), Positives = 106/165 (64%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V IRE + D++ F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGL+PL SE + +SRDC D C CSV L KC TDST++V + DL
Sbjct: 69 RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDLAKFH 125
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ S V RG +I KLRK QELRL IA+KGI
Sbjct: 126 NG------SRLGDPVVRDVQKRGPLICKLRKHQELRLTCIAKKGI 164
[71][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI0000123F31
Length = 399
Score = 146 bits (369), Expect = 1e-33
Identities = 84/176 (47%), Positives = 114/176 (64%), Gaps = 6/176 (3%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIP S+ M+++R+C+ + C+ CS+ F L+ KC ++TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTRECECAE---FCDECSIPFILQTKCTDEATLAVTTAD 119
Query: 424 L--YSSDHTVVPVDFSAADSSSV---ETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L + TV P A E I+IVKLRKGQEL L+A A+KG G
Sbjct: 120 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFG 175
[72][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 146 bits (369), Expect = 1e-33
Identities = 90/193 (46%), Positives = 116/193 (60%), Gaps = 19/193 (9%)
Frame = +1
Query: 55 EGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSV 234
+G R P + ++E+ +D +KF L TD S+ANALRRV+I+EVPT+AIDLVE+ NSS
Sbjct: 5 DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64
Query: 235 LNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVT 414
L DEFIAHRLGLIPL S +A M F D GD + V LRVKC++D T DVT
Sbjct: 65 LCDEFIAHRLGLIPLVSHKAADMEFPYD---YAGDDE-TVTDVPIELRVKCVSDQTEDVT 120
Query: 415 SKDL-----YSSDHTVVPVDF--------------SAADSSSVETSDGRGIIIVKLRKGQ 537
S DL Y+ TV PV + + AD S + D I+I+KLRK Q
Sbjct: 121 SNDLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQAD-GDKHPILILKLRKNQ 179
Query: 538 ELRLRAIARKGIG 576
E+ +R +ARKG+G
Sbjct: 180 EINMRCVARKGVG 192
[73][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY52_CLAL4
Length = 307
Score = 146 bits (368), Expect = 1e-33
Identities = 87/174 (50%), Positives = 108/174 (62%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
ME S PRV IR+ + D++ F LR D SVAN+LRR M+SEVPT+AIDLVEI+VN+S
Sbjct: 1 MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VL DE ++HRLGLIPL SE + +SRDC D C CSV+ L KC +DST++V
Sbjct: 61 VLADELLSHRLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNV 117
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
S DL + S + RG +I KLRK QELRL IA+KGI
Sbjct: 118 YSSDLAKFHNG------SKLGDPVIRDPAHRGPLICKLRKHQELRLTCIAKKGI 165
[74][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
Length = 311
Score = 144 bits (363), Expect = 5e-33
Identities = 83/165 (50%), Positives = 106/165 (64%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
PRV IR +++ F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11 PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL SE + +SRDC D C CSV+ L KC TDST+ V S DL
Sbjct: 71 RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDLAKFH 127
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ D A D+ +G +I KLRK QELR+ IA+KGI
Sbjct: 128 NGSKLGDPVARDNHR------KGPLICKLRKHQELRITCIAKKGI 166
[75][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7EJ53_SCLS1
Length = 335
Score = 144 bits (363), Expect = 5e-33
Identities = 83/166 (50%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKI E ++ FEL + D S AN+LRR ++SEVPT+AID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S+ + ++RDCD DG CE CSV L +C D + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKVYARDL---- 127
Query: 439 HTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
V P + + V T DG G +I KLRKGQELR++ IA KGI
Sbjct: 128 -VVDPQRANKWVGNPVITDPDGLGPVIAKLRKGQELRMKCIALKGI 172
[76][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
Length = 246
Score = 144 bits (362), Expect = 6e-33
Identities = 81/144 (56%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Frame = +1
Query: 148 VANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCD 324
VAN++RR +++EVPT+AID VEI+ NSSVL+DEFI+HR+GLIPLTS+ + + F+RDC
Sbjct: 1 VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60
Query: 325 ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGR 504
+ C CSVE L VKC D T VTS+DL SS+ VVPV +SS D
Sbjct: 61 C---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVD-- 115
Query: 505 GIIIVKLRKGQELRLRAIARKGIG 576
I+IVKLRKGQELRLRA A+KG G
Sbjct: 116 DILIVKLRKGQELRLRAYAKKGFG 139
[77][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
albicans RepID=Q5A462_CANAL
Length = 318
Score = 143 bits (361), Expect = 8e-33
Identities = 79/165 (47%), Positives = 104/165 (63%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V IRE + D++ F L++ D +VAN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL SE + +SRDC D C CSV L C T+ST++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
H + S + RG +I KLRK QEL L IA+KGI
Sbjct: 126 H-----NGSKLGDPVIRDPQARGPLICKLRKHQELSLTCIAKKGI 165
[78][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
dubliniensis CD36 RepID=B9WGL5_CANDC
Length = 313
Score = 143 bits (361), Expect = 8e-33
Identities = 79/165 (47%), Positives = 104/165 (63%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V IRE + D++ F L++ D +VAN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9 PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL SE + +SRDC D C CSV L C T+ST++V + DL
Sbjct: 69 RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
H + S + RG +I KLRK QEL L IA+KGI
Sbjct: 126 H-----NGSKLGDPVIRDPQARGPLICKLRKHQELSLTCIAKKGI 165
[79][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
RepID=A6S2E5_BOTFB
Length = 336
Score = 142 bits (359), Expect = 1e-32
Identities = 82/166 (49%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKI E ++ FEL + D S AN+LRR ++SEVPT+AID V+IE N+SVL DEFIAH
Sbjct: 15 PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S+ + ++RDCD +G CE CSV L +C D + V ++DL
Sbjct: 75 RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDL---- 127
Query: 439 HTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
V P + + V T DG G +I KLRKGQELR++ IA KGI
Sbjct: 128 -VVDPQRANKWVGNPVITDPDGLGPVIAKLRKGQELRMKCIALKGI 172
[80][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
RepID=A8XFM5_CAEBR
Length = 280
Score = 142 bits (357), Expect = 2e-32
Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE
Sbjct: 3 YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62
Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHR+GLIP S+ M+++R C+ C+ CS+ F L+ KC ++TL VT+ D
Sbjct: 63 FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAVTTAD 118
Query: 424 L--YSSDHTVVPVDFSAADSSSV---ETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L + TV P A E I+IVKLRKGQEL L+A A+KG G
Sbjct: 119 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFG 174
[81][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
RepID=B8PBS2_POSPM
Length = 265
Score = 142 bits (357), Expect = 2e-32
Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V+IREL+ D++ F + + D ++AN+LRRVM++++PTVAID+VEIE N++VL DEFIAH
Sbjct: 4 PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLG+IPL S GMR++RDC C++C+VE L V C +DVTS L S
Sbjct: 64 RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
D + + S ++I K+RKGQELRLR IA+KG+
Sbjct: 121 DELAKRPENFGHPVGKFDPSVS-PVLIAKIRKGQELRLRCIAKKGV 165
[82][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 141 bits (355), Expect = 4e-32
Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
Frame = +1
Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
+R P + +R L+ DYM FEL++TD S ANALRR M++EVPT+AIDLVE+E N++VLNDEF
Sbjct: 10 SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69
Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL- 426
+AHRLGLIPL S A+ + + G + F L V C + +DVTS DL
Sbjct: 70 LAHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLV 124
Query: 427 -YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
D VVPV++ +A + I+I KLR+GQ L+L A ARKGIG
Sbjct: 125 PLEPDAGVVPVNYHSATE--------KPIVICKLRRGQHLKLVARARKGIG 167
[83][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
RepID=B2B158_PODAN
Length = 334
Score = 141 bits (355), Expect = 4e-32
Identities = 82/168 (48%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P VKI + +KFEL++ D S AN+LRRVM++E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16 PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL +E + +SRDCD + CE CSV+ L KC + V+++DL
Sbjct: 76 RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL---- 128
Query: 439 HTVVPVDFSAADSSS---VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VPV S + DG G +I+KLR QE++L IA+KGI
Sbjct: 129 ---VPVGERINQSLGTPVINDKDGTGPLILKLRPEQEIKLECIAKKGI 173
[84][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DQ44_PICGU
Length = 305
Score = 141 bits (355), Expect = 4e-32
Identities = 80/164 (48%), Positives = 105/164 (64%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV IR+ + D++ F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
LG+IPL SE + +SRDC D C CSV+ L KC +DST+ V + DL +
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDLAKFHN 125
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
S V RG +I KLRK QELRL IA+KGI
Sbjct: 126 G------SKLGDPVVRDHHQRGPLICKLRKHQELRLTCIAKKGI 163
[85][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YWI1_NECH7
Length = 335
Score = 140 bits (353), Expect = 7e-32
Identities = 79/165 (47%), Positives = 104/165 (63%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKI ++ FEL T+ + ANALRRV+ +EVPT+AIDLVEIE+NSSVL DEFIAH
Sbjct: 15 PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S+ + SRDCD + CE CSV +L KC +D + V ++DL
Sbjct: 75 RLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDLVVDG 131
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
++ S + +G G +I KLRK QEL++ IA+KGI
Sbjct: 132 RHA-----NSVGSPVITDPEGYGCLIAKLRKDQELKITCIAKKGI 171
[86][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023DAEE
Length = 337
Score = 139 bits (350), Expect = 2e-31
Identities = 80/165 (48%), Positives = 104/165 (63%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKI ++ FEL T+ S ANA+RRV+ +EVPT+AIDLVEIE NSSVL DEFIAH
Sbjct: 15 PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S+ + +SRDCD + CE CSV L KC +D + V ++DL
Sbjct: 75 RLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDL---- 127
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V ++ S + +G G +I KLRK QEL++ IA+KGI
Sbjct: 128 -VVDGRHGNSVGSPMIMDPEGYGCLIAKLRKHQELKISCIAKKGI 171
[87][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
tropicalis MYA-3404 RepID=C5MDV1_CANTT
Length = 327
Score = 139 bits (350), Expect = 2e-31
Identities = 79/165 (47%), Positives = 101/165 (61%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V IR + D++ F LR+ D SVAN++RR M++EVPT++IDLVEIE N+SVL DEF++H
Sbjct: 9 PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL SE + +SRDC D C CSV L C ++T++V + DL +
Sbjct: 69 RLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTT 125
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
HT S RG II KLRK QEL L IA+KGI
Sbjct: 126 HT-----GSKLGDPVFRDPRNRGPIICKLRKDQELALTCIAKKGI 165
[88][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
Length = 336
Score = 139 bits (350), Expect = 2e-31
Identities = 78/165 (47%), Positives = 106/165 (64%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V +R+ + D + F L+ D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7 PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S+ + +SRDC AC D C CSV L KC +DST++V + DL
Sbjct: 67 RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDL---- 119
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ ++ + RG +I KLR+ QE+RL IA+KGI
Sbjct: 120 ---LKLNTELLGKPIIRDPQNRGPLICKLRRHQEIRLTCIAKKGI 161
[89][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151B3AC
Length = 305
Score = 139 bits (349), Expect = 2e-31
Identities = 79/164 (48%), Positives = 104/164 (63%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV IR+ + D++ F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9 RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
LG+IPL SE + +SRDC D C C V+ L KC +DST+ V + DL +
Sbjct: 69 LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDLAKFHN 125
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
S V RG +I KLRK QELRL IA+KGI
Sbjct: 126 G------SKLGDPVVRDHHQRGPLICKLRKHQELRLTCIAKKGI 163
[90][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 137 bits (346), Expect = 5e-31
Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
V + L+D+ + F+L+ D S+ANALRR+MI++VPTV+IDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70
Query: 265 GLIPLTSERAMGM----RFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
GLIPL S +A + ++ D D V L V+C +D T DVTS DL S
Sbjct: 71 GLIPLDSTKASELVKPYEYTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLIS 122
Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
D V PV F S ++ GI+I KLRK Q+L L+ IARKG G
Sbjct: 123 HDERVKPVSFGGTGGGSAKSG---GILIAKLRKNQQLSLKCIARKGTG 167
[91][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 137 bits (344), Expect = 8e-31
Identities = 83/181 (45%), Positives = 109/181 (60%), Gaps = 12/181 (6%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
Y R PRV+I ++ +KF L ++D SVAN LRR+MI+EVPT+AIDLVE NS+VLNDE
Sbjct: 3 YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62
Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDA------CDGDGQCEYCSVEFHLRVKCMTD---- 396
+IAHR+GLIP+ + A ++ S DA C C CSVEF L +
Sbjct: 63 YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEED 122
Query: 397 --STLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
+ L VTSKDL S++ V P F + D + + G+ IVKL GQ L+L+AIAR G
Sbjct: 123 VLAPLTVTSKDLVSNNELVQPAHFLSQDEQ--DEAQDEGVAIVKLGPGQRLKLKAIARMG 180
Query: 571 I 573
I
Sbjct: 181 I 181
[92][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6K2N9_SCHJY
Length = 308
Score = 136 bits (342), Expect = 1e-30
Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 7/172 (4%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V I+ + + ++F L +TD S+AN+LRRV++ E+PTVAIDLVEI VN+SV+ DEF+AH
Sbjct: 5 PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64
Query: 259 RLGLIPLTSER-----AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
RLG+IPL S +G+ ++R+CD D C CSVE L KC D T++V ++D
Sbjct: 65 RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121
Query: 424 LYSSDHTVV--PVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
L ++ + PV AD+ S G +I+KLRK QE+ LR IA+KGI
Sbjct: 122 LVVDSNSTLGQPV---LADARS------HGPLILKLRKEQEVSLRCIAKKGI 164
[93][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
guttata RepID=UPI000194E98D
Length = 129
Score = 135 bits (341), Expect = 2e-30
Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPLTS+ + M++SRDC D C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVP 453
L S++ V+P
Sbjct: 120 LISNNPRVIP 129
[94][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
cerevisiae RepID=RPB3_YEAST
Length = 318
Score = 135 bits (341), Expect = 2e-30
Identities = 78/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKIRE D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S + +SRDC D C+ CSV L+ ++ST +V SKDL
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDL---- 118
Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V+ + + ++ +G G++I KLRKGQEL+L +A+KGI
Sbjct: 119 --VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGI 163
[95][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 135 bits (340), Expect = 2e-30
Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 18/186 (9%)
Frame = +1
Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
R P + ++EL + ++F L TD SVANALRRV+I+EVPT+AIDLV++ N+S L DEFI
Sbjct: 10 RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69
Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVK-CMTDSTLDVTSKDLY 429
AHRLGLIPL SE+A+ M F D GD + V F L C + T+DVTS DL
Sbjct: 70 AHRLGLIPLLSEKAVEMEFPYD---YAGDDE-SVTDVHFELNTGICASAETVDVTSNDLV 125
Query: 430 SSDHTVVPVDF-----------------SAADSSSVETSDGRGIIIVKLRKGQELRLRAI 558
D V PV++ AA + D G++IVKLR+GQ++ +R +
Sbjct: 126 CYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMRCV 185
Query: 559 ARKGIG 576
ARKG+G
Sbjct: 186 ARKGVG 191
[96][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DHI5_LACTC
Length = 328
Score = 135 bits (340), Expect = 2e-30
Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKIRE D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S + + RDC D C+ CSV L+ ++ST +V +KDL
Sbjct: 66 RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDL---- 118
Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V+ + + ++ DG G++I KLRKGQEL+L+ +A+KGI
Sbjct: 119 --VIVSNLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCVAKKGI 163
[97][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 134 bits (338), Expect = 4e-30
Identities = 78/169 (46%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
V + L+D + F L+ D S+ANALRRVMI++VPT+AIDLVE+ NSSVL DEF+AHRL
Sbjct: 11 VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70
Query: 265 GLIPLTSERAMGM-----RFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
GLIPL+S++ + D A D V L V+C+T+ +DVTS+D+
Sbjct: 71 GLIPLSSKKVSELFKPYEYMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMV 121
Query: 430 SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
S D V P+ F S + + GI+IVKLR Q+L L+ IARKG G
Sbjct: 122 SYDERVKPITFQGTVSDAAKPG---GILIVKLRNKQQLLLKCIARKGTG 167
[98][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
Tax=Candida glabrata RepID=Q6FPN4_CANGA
Length = 312
Score = 134 bits (336), Expect = 7e-30
Identities = 77/165 (46%), Positives = 106/165 (64%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKIRE D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH
Sbjct: 6 PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S + +SRDC D C+ CSV L+ ++ST +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLL--- 119
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V + ++ +G G++I KLRKGQEL+L IA+KGI
Sbjct: 120 -IVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIAKKGI 163
[99][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4P8L3_USTMA
Length = 329
Score = 134 bits (336), Expect = 7e-30
Identities = 79/178 (44%), Positives = 109/178 (61%), Gaps = 14/178 (7%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P++ +R+L D+ F L + D S AN+LRR+MI+++PTVAID+VEI N++VL DE +AH
Sbjct: 12 PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71
Query: 259 RLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLG++PL S + A + RDC DG C+ CSVE LR +C T L+VTS+DL S
Sbjct: 72 RLGMVPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128
Query: 436 D----HTVVPVDFSAADSSSVETSDGR---------GIIIVKLRKGQELRLRAIARKG 570
D T+ D A ++ GR I++VK+ KGQEL +R IARKG
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKG 186
[100][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0D0L9_LACBS
Length = 304
Score = 134 bits (336), Expect = 7e-30
Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 18/183 (9%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V+IRELK D + F L + D + AN+LRRVM++++PTVAID+VEIE+N++VL DEFIAH
Sbjct: 9 PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLG++PL S +R +RDC G C +C++ L V C D+T++VTS L
Sbjct: 69 RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL--- 122
Query: 436 DHTVVPVDFSAADSS-SVETSDGRG----------------IIIVKLRKGQELRLRAIAR 564
V+P D+S S E RG I+I K+RKGQEL+++ +A+
Sbjct: 123 --DVIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVKCVAK 180
Query: 565 KGI 573
KGI
Sbjct: 181 KGI 183
[101][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
Length = 311
Score = 133 bits (334), Expect = 1e-29
Identities = 76/165 (46%), Positives = 105/165 (63%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKIRE D + F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6 PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGL+PL S+ + + RDC D C+ CSV L ++ST +V +KDL
Sbjct: 66 RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDL---- 118
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V + ++ + G++I KLRKGQELRL+ +A+KGI
Sbjct: 119 QIVSDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVAKKGI 163
[102][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
Length = 307
Score = 133 bits (334), Expect = 1e-29
Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKIRE D + F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6 PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S + + RDC D C+ CSVE L ++ST +V +KDL
Sbjct: 66 RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDLQ--- 119
Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ D + ++ + G++I KLRKGQE+R++ IA+KGI
Sbjct: 120 ---ITSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGI 163
[103][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
Length = 297
Score = 131 bits (330), Expect = 3e-29
Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+ IR + + + F L +T +VAN+LRRV+++E+PTVAIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 265 GLIPLTSER-----AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
G+IPL S +G+ ++R+CD D C CSVE L KC + T+++ ++DL
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 430 SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
S ++ + A S RG +I KLRK QE+ LR IA+KGI
Sbjct: 124 VSSNSSLGHPILADPKS-------RGPLICKLRKEQEISLRCIAKKGI 164
[104][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
RepID=B7Z377_HUMAN
Length = 155
Score = 131 bits (329), Expect = 4e-29
Identities = 70/131 (53%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
FIAHRLGLIPL S+ + +++SRDC + C CSVEF L V+C D T VTS+D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 424 LYSSDHTVVPV 456
L S+ V+PV
Sbjct: 120 LISNSPRVIPV 130
[105][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N5W0_COPC7
Length = 366
Score = 131 bits (329), Expect = 4e-29
Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 22/187 (11%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P V++RE+K D + F L + D + AN+ RRV+++++PTVAIDLVE E N+SVL DE+IAH
Sbjct: 8 PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLG IPL S +R++RDC QC YC+V+ L V C D+T++VTS L
Sbjct: 68 RLGQIPLISTNCDEAIRYTRDCTCLS---QCSYCAVQLRLDVACNDDTTMEVTSNHL--- 121
Query: 436 DHTVVPVDFSAADSSSVETSDGRG---------------------IIIVKLRKGQELRLR 552
VVP+D D E G ++I K+RKGQELR++
Sbjct: 122 --EVVPLD----DYMQEEIQHGEEKAKRTQWFGHPVGKNEPGTPPVLICKIRKGQELRVK 175
Query: 553 AIARKGI 573
IA+KGI
Sbjct: 176 CIAKKGI 182
[106][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC29_PENMQ
Length = 352
Score = 130 bits (328), Expect = 6e-29
Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SVL DEF+AH
Sbjct: 12 PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYS 432
RLGLIPL S+ M ++RDC + C CSV L +C D + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL-- 126
Query: 433 SDHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + +G+G +I KL KGQEL+L IARKGI
Sbjct: 127 ----VVTGDRANEWVGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 171
[107][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
Length = 331
Score = 130 bits (326), Expect = 1e-28
Identities = 74/171 (43%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L D + AN+LRR M++EVPTVAIDLVE+E N+SVL DEF+AH
Sbjct: 13 PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL--- 426
RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL
Sbjct: 73 RLGLIPLNSKNCDQDLEYTRDCECED---HCARCSVTLQLHARCTGDDIMRVYARDLAVA 129
Query: 427 --YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
++D PV + +G+G +I KLR+GQEL++ IA+KGI
Sbjct: 130 GERANDWVGTPV---------ITDPEGKGPLICKLRRGQELKMTCIAKKGI 171
[108][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H5R6_PARBA
Length = 352
Score = 130 bits (326), Expect = 1e-28
Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + + F L D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ M +SRDCD +G C C V L V+C + + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDL--- 127
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
++ D + S + ++G+G +I KL +GQEL++ IA+KGI
Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172
[109][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GI99_PARBD
Length = 352
Score = 130 bits (326), Expect = 1e-28
Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + + F L D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ M +SRDCD +G C C V L V+C + + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL--- 127
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
++ D + S + ++G+G +I KL +GQEL++ IA+KGI
Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172
[110][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SC71_PARBP
Length = 283
Score = 130 bits (326), Expect = 1e-28
Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + + F L D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH
Sbjct: 14 PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ M +SRDCD +G C C V L V+C + + V ++DL
Sbjct: 74 RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL--- 127
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
++ D + S + ++G+G +I KL +GQEL++ IA+KGI
Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172
[111][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
10500 RepID=B8M3N2_TALSN
Length = 353
Score = 130 bits (326), Expect = 1e-28
Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SV+ DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYS 432
RLGLIPL S+ M ++RDC + C CSV L +C D + V S+DL
Sbjct: 72 RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL-- 126
Query: 433 SDHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + +G+G +I KL KGQEL+L IARKGI
Sbjct: 127 ----VVTGDRANEWVGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 171
[112][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
subunit B3) (RNA polymerase II subunit 3) (DNA-directed
RNA polymerase II subunit C) (DNA-directed RNA
polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
Length = 275
Score = 129 bits (325), Expect = 1e-28
Identities = 76/172 (44%), Positives = 112/172 (65%), Gaps = 2/172 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS-K 420
FIAHR+GLIPLTS+ + +++SR +G C C+ +F + C+ + +T
Sbjct: 63 FIAHRVGLIPLTSDDIVDKLQYSRGNSVTEG---CR-CANKFTGLLGCLPFPSFQITQVT 118
Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
L ++ + V + D+ + + I+IVKLRKGQELRLRA A+KG G
Sbjct: 119 KLVNTTFFSLQVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170
[113][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DWL5_ZYGRC
Length = 308
Score = 129 bits (325), Expect = 1e-28
Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+VKIRE + + F L + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6 PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPL S + + RDC D C+ CSV L+ ++ST +V +KDL
Sbjct: 66 RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDL---- 118
Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V+ + + ++ +G G++I KLRKGQEL L+ +A+KGI
Sbjct: 119 --VIVSNLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLKCVAKKGI 163
[114][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 129 bits (324), Expect = 2e-28
Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
Frame = +1
Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
R P+V+I + +++F L +TD S+AN LRR+MI+EVPT+AIDLVE NSSVLNDE+I
Sbjct: 2 RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61
Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHL----------RVKCMTDST 402
AHRLGL+P+ R M ++C D +C C VEF L R D
Sbjct: 62 AHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLA 115
Query: 403 LDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
L VTS+DL S++ V P F + + S GI IVKL GQ L+L+AIAR GI
Sbjct: 116 LTVTSRDLISNNMLVSPAHF--LNEEEQDESHDEGISIVKLGPGQHLKLKAIARMGI 170
[115][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
Length = 276
Score = 129 bits (324), Expect = 2e-28
Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
PR+++ E D + F L+ D ++AN+ RRVMI+EVPT+AID V I N+SVL+DEF+AH
Sbjct: 11 PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RLGLIPLTSE A + RDC C+ C++C V L V+ T+ VT+ DL S
Sbjct: 71 RLGLIPLTSEAADKFYYPRDCTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTTDDLISQ- 127
Query: 439 HTVVPVDFSAAD--SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
DF A S+ E++ I+I KL KGQ ++L A A+KG G
Sbjct: 128 ---AAGDFMAVKPISAREESNIRNPIVICKLAKGQRIQLTAFAKKGFG 172
[116][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
(RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QC01_ASPNC
Length = 338
Score = 129 bits (323), Expect = 2e-28
Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S
Sbjct: 72 RLGLIPLISKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ + +G G +I KLR+GQEL++ IA+KGI
Sbjct: 129 GERA----NEWVGNPVILDPEGNGPLICKLRRGQELKMTCIAKKGI 170
[117][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
RepID=A1C6Y7_ASPCL
Length = 333
Score = 128 bits (322), Expect = 3e-28
Identities = 72/171 (42%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + ++ F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY-- 429
RLGLIPL S+ + ++RDCD D +C CSV L +C D + V ++DL
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCDCED---RCARCSVTLTLHARCTGDEIMPVYARDLVVT 128
Query: 430 ---SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+++ PV + +G+G +I KLR+GQEL++ IA+KG+
Sbjct: 129 GERANEWVGTPV---------LTDPEGKGSLICKLRRGQELKMTCIAKKGM 170
[118][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 128 bits (321), Expect = 4e-28
Identities = 72/168 (42%), Positives = 98/168 (58%)
Frame = +1
Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
R P ++I E +KF L +TD S+ANALRR+M++E+PT+AIDLV I N+SVL+DEFI
Sbjct: 7 RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66
Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
HRLGL+P+ S + F D C +C CSV++ L +KC + +VT D+YS
Sbjct: 67 VHRLGLLPIDSRQIRDFNFK---DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYS 123
Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+ V + V + GI+I KL GQ L R A KGIG
Sbjct: 124 T-LPVPNIPLPVPRKEDVTDPNNEGILIAKLGPGQSLTARMTATKGIG 170
[119][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
RepID=C5GT99_AJEDR
Length = 346
Score = 128 bits (321), Expect = 4e-28
Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F L D + AN+LRR +++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ M +SRDCD +G C C V L+ +C + + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMYYSRDCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDL--- 126
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + ++G+G +I KLR+GQE+++ +A+KGI
Sbjct: 127 ---VVVGDRANEWVGNPVITDAEGKGPLICKLRRGQEIKMTCVAKKGI 171
[120][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
capsulatus G186AR RepID=C0NSH0_AJECG
Length = 475
Score = 128 bits (321), Expect = 4e-28
Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F L D + AN+LRR +++E+PTVAID+VEIE N+SVL DEFI+H
Sbjct: 13 PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ M +SRDCD +G C C V L+ +C + + V ++DL
Sbjct: 73 RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL--- 126
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + ++G+G +I KLR+GQE+++ IA+KGI
Sbjct: 127 ---VVVGDRANEWVGNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGI 171
[121][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
Length = 342
Score = 127 bits (319), Expect = 6e-28
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ + +G G +I KLR+GQEL++ IA+KGI
Sbjct: 129 GERA----NEWVGNPVITDPEGNGPLICKLRRGQELKMTCIAKKGI 170
[122][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
Tax=Emericella nidulans RepID=C8V1J2_EMENI
Length = 333
Score = 127 bits (319), Expect = 6e-28
Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + ++RDC+ D C CSV L +C +D + V ++DL +
Sbjct: 72 RLGLIPLDSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTSDEIMRVYARDLVIT 128
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ + DG G +I KLR+GQEL++ IA+KGI
Sbjct: 129 GERA----NEWVGNPVITDPDGNGPLICKLRRGQELKMTCIAKKGI 170
[123][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
RepID=B8NGG7_ASPFN
Length = 338
Score = 127 bits (319), Expect = 6e-28
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ + +G G +I KLR+GQEL++ IA+KGI
Sbjct: 129 GERA----NEWVGNPVITDPEGNGPLICKLRRGQELKMTCIAKKGI 170
[124][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
RepID=A1DHL4_NEOFI
Length = 336
Score = 127 bits (318), Expect = 8e-28
Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + ++RDC+ D C CSV L +C D + V ++DL S
Sbjct: 72 RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 128
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ +G+G +I KLR+GQEL++ +A+KGI
Sbjct: 129 GERA----NEWVGDPVITDPEGKGPLICKLRRGQELKMTCVAKKGI 170
[125][TOP]
>UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
polypeptide C n=1 Tax=Ornithorhynchus anatinus
RepID=UPI000155CFD6
Length = 352
Score = 125 bits (313), Expect = 3e-27
Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Frame = +1
Query: 166 RVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDG 342
R I P ++ID V+I+ NSSVL+DEFIAHRLGLIPLTS+ + +++SRDC +
Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EE 169
Query: 343 QCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVK 522
C CSVEF L V+C D T VTS+DL S+ V+PV + D+ + + I+IVK
Sbjct: 170 FCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVK 229
Query: 523 LRKGQELRLRAIARKGIG 576
LRKGQELRLRA A+KG G
Sbjct: 230 LRKGQELRLRAYAKKGFG 247
[126][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
Length = 304
Score = 124 bits (312), Expect = 4e-27
Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 1/169 (0%)
Frame = +1
Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
++ P+V I +DD ++ L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF
Sbjct: 2 SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61
Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
I+HRLGLIPL SE M++SRDC D C+ CSV L + + + D+Y
Sbjct: 62 ISHRLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSARHEGEE----GTTDVY 114
Query: 430 SSDHTVVPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGI 573
SS V + V D +GI++ KLR QEL +R IA+KGI
Sbjct: 115 SSSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGI 163
[127][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R7L3_MAGGR
Length = 330
Score = 124 bits (311), Expect = 5e-27
Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
VKI ++ FEL + D S+AN++RRVM++E+PTVAID EI+ N+SVL DEFIAHRL
Sbjct: 17 VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GL+PL++ A + ++RDCD + CE CSV + KC ++ V +Y+ D
Sbjct: 77 GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESEDPNYVMK--VYARDMV 131
Query: 445 VVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
V + + + V T DG G+I+ KLR+ QE+ +R +A+KGI
Sbjct: 132 VDGRRVNQSVGTPVITDPDGLGVILFKLRRNQEVHIRCVAKKGI 175
[128][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 124 bits (310), Expect = 7e-27
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Frame = +1
Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
R P+ +I EL + ++F L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
HR+GLIPL S F D C+ +C CSVE+ L V C +T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 433 -SDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
+ T+VP+ D S DG GI+I KL GQ + +R A KGIG
Sbjct: 125 VATSTLVPMPVPKKDDS----VDGMNNGILIAKLGPGQRIAMRMTACKGIG 171
[129][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 124 bits (310), Expect = 7e-27
Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Frame = +1
Query: 73 RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
R P+ +I EL + ++F L +TD S+AN LRR++++E+PT+AIDLV + N+SVL+DEFI
Sbjct: 8 RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67
Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
HR+GLIPL S F D C+ +C CSVE+ L V C +T +VT D+
Sbjct: 68 VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124
Query: 433 -SDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
+ T+VP+ D S DG GI+I KL GQ + +R A KGIG
Sbjct: 125 VATSTLVPMPVPKKDDS----VDGMNNGILIAKLGPGQRIAMRMTACKGIG 171
[130][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DX59_COCIM
Length = 345
Score = 124 bits (310), Expect = 7e-27
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F L D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + M ++R+CD +G C C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDL--- 126
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + G+G II KLR+GQE+++ +KGI
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGI 171
[131][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
Tax=Coccidioides posadasii C735 delta SOWgp
RepID=C5P0B5_COCP7
Length = 345
Score = 124 bits (310), Expect = 7e-27
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F L D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + M ++R+CD +G C C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDL--- 126
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + G+G II KLR+GQE+++ +KGI
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGI 171
[132][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
18224 RepID=B6QC30_PENMQ
Length = 370
Score = 124 bits (310), Expect = 7e-27
Identities = 75/155 (48%), Positives = 98/155 (63%), Gaps = 4/155 (2%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SVL DEF+AHRLGLIPL S+
Sbjct: 44 FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103
Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYSSDHTVVPVDFSA-- 468
M ++RDC + C CSV L +C D + V S+DL VV D +
Sbjct: 104 DMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL------VVTGDRANEW 154
Query: 469 ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ + +G+G +I KL KGQEL+L IARKGI
Sbjct: 155 VGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 189
[133][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
Length = 334
Score = 123 bits (308), Expect = 1e-26
Identities = 68/163 (41%), Positives = 98/163 (60%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
V+ E F +++ + AN+LRRVM+SE+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GL+PL+S+ + +SRDCD +G C+ C+V L KC + V ++DL T
Sbjct: 72 GLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVIESRT 128
Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
P D + S+G G IVKLR+GQ + +R IA+KGI
Sbjct: 129 --PND--EVGKPVITDSEGTGSCIVKLRRGQAINMRCIAKKGI 167
[134][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 122 bits (306), Expect = 2e-26
Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
Frame = +1
Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
G S A P + ++E+ + +KF L + D S+AN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
+DE+I+HRLGL+P+ S R DCD D C CSV++ L V C DS L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259
Query: 418 KD----------LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
+D L S+ + ++ + GI IVKLRK Q + +R A K
Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319
Query: 568 GIG 576
GIG
Sbjct: 320 GIG 322
[135][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 122 bits (306), Expect = 2e-26
Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
Frame = +1
Query: 58 GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
G S A P + ++E+ + +KF L + D S+AN LRRVMISEVP++AIDLV + N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203
Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
+DE+I+HRLGL+P+ S R DCD D C CSV++ L V C DS L VT
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259
Query: 418 KD----------LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
+D L S+ + ++ + GI IVKLRK Q + +R A K
Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319
Query: 568 GIG 576
GIG
Sbjct: 320 GIG 322
[136][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
Length = 345
Score = 122 bits (305), Expect = 3e-26
Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +R+++ + F L D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13 PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S+ + M ++RDCD +G C C + L KC + + V ++DL
Sbjct: 73 RLGLIPLHSKNCDVDMVYARDCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDL--- 126
Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
VV D + + + G+G II KLR+ QE+++ +KGI
Sbjct: 127 ---VVIGDRANEWVGNPVINDPAGKGPIICKLRRDQEVKMTCTVKKGI 171
[137][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
RepID=B0XTA3_ASPFC
Length = 392
Score = 121 bits (304), Expect = 3e-26
Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
F+L D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+
Sbjct: 82 FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141
Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADS 477
+ ++RDCD D C CSV L +C D + V ++DL S
Sbjct: 142 DVEYTRDCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERA----NEWVGD 194
Query: 478 SSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ +G+G +I KLR+GQEL++ +A+KGI
Sbjct: 195 PVITDPEGKGPLICKLRRGQELKMTCVAKKGI 226
[138][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L2P7_PLAKH
Length = 334
Score = 121 bits (303), Expect = 4e-26
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
Frame = +1
Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
A+ V+I +L D M F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 10 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69
Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
+AHRLGLIP+ S F C + C C++++ ++VKC S +DVT D+
Sbjct: 70 LAHRLGLIPIDSRNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIDVTHYDIE 126
Query: 430 SSDH---TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
S +H +PV F ++ +++ I IV L K Q L ++ IA KGIG
Sbjct: 127 SVEHEPNVPMPVPFEDRNNKMAQSN---AIPIVTLSKNQTLHMKLIATKGIG 175
[139][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
RepID=A5K6U4_PLAVI
Length = 333
Score = 120 bits (300), Expect = 1e-25
Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
Frame = +1
Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
A+ V+I +L D M F L +++ +ANALRR+M+SE+PT+AID+V + N+S +DEF
Sbjct: 9 AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68
Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
+AHRLGLIP+ S F C + C C++++ ++VKC S +++T D+
Sbjct: 69 LAHRLGLIPIDSTNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIEITHHDIE 125
Query: 430 SSDHTV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
S +H VP+ D ++ + ++ I IV L K Q L ++ IA KGIG
Sbjct: 126 SVEHEPNVPMPVPLEDRNN-QMAESNAIPIVTLSKNQTLHMKLIATKGIG 174
[140][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
NAm1 RepID=A6RAE4_AJECN
Length = 576
Score = 120 bits (300), Expect = 1e-25
Identities = 67/154 (43%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
F L D + AN+LRR +++E+PTVAID+VEIE N+SVL DEFI+HRLGLIPL S+
Sbjct: 50 FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109
Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSA--A 471
M +SRDCD +G C C V L+ +C + + V ++DL V+ D +
Sbjct: 110 DMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL------VIVGDRANEWV 160
Query: 472 DSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+ + ++G+G +I KLR+GQE+++ IA+KGI
Sbjct: 161 GNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGI 194
[141][TOP]
>UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2
n=1 Tax=Pan troglodytes RepID=UPI0000E242AB
Length = 242
Score = 119 bits (299), Expect = 1e-25
Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Frame = +1
Query: 193 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEF 369
+AID V+I+ NSSVL+DEFIAHRLGLIPL S+ + +++SRDC + C CSVEF
Sbjct: 12 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEF 68
Query: 370 HLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRL 549
L V+C D T VTS+DL S+ V+PV D+ + + I+IVKLRKGQELRL
Sbjct: 69 TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRL 128
Query: 550 RAIARKGIG 576
RA A+KG G
Sbjct: 129 RAYAKKGFG 137
[142][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
RepID=C5FPK3_NANOT
Length = 359
Score = 119 bits (299), Expect = 1e-25
Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
F L D + AN+ RR +++E+PTVAID+VEIEVN+SVL DEFI+HRLGLIPL S+
Sbjct: 37 FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96
Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADS 477
M +SRDCD +G C+ C + L KC ++ + V ++DL VV +
Sbjct: 97 DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDL-----VVVGDRANEWVG 148
Query: 478 SSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
+ V T +G+G II KLR+GQE++ I +KGI
Sbjct: 149 NPVLTDPEGKGPIICKLRRGQEVKFNCIVKKGI 181
[143][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
Length = 314
Score = 119 bits (298), Expect = 2e-25
Identities = 69/143 (48%), Positives = 91/143 (63%)
Frame = +1
Query: 145 SVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSRDCD 324
++AN+LRRVM++E+PT+AIDLVEI N+SVL DEFI+HRLGLIPL S+ + +SRDC
Sbjct: 21 TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79
Query: 325 ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGR 504
C D C+ CSV L C D T+D+ S+DL HT + +
Sbjct: 80 VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMV--HTT--PERPELGKPIYTDPAKK 133
Query: 505 GIIIVKLRKGQELRLRAIARKGI 573
GI+I KLRK Q LR++ IA+KGI
Sbjct: 134 GILICKLRKNQSLRIKCIAKKGI 156
[144][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UL31_PHANO
Length = 335
Score = 119 bits (297), Expect = 2e-25
Identities = 66/163 (40%), Positives = 97/163 (59%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
V+ E F +++ + AN+LRRVM++E+PT+AID+VE+ N+SVL DEF+ HRL
Sbjct: 12 VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GLIPL+S + ++RDCD +G C+ C+V L KC + V ++DL +
Sbjct: 72 GLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESNR 128
Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
P D + S+G G IVKLR+GQ + +R IA+KGI
Sbjct: 129 --PND--EVGRPVITDSEGTGSCIVKLRRGQAINMRCIAKKGI 167
[145][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8I2S6_PLAF7
Length = 335
Score = 117 bits (292), Expect = 8e-25
Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++ I +L D + F L ++++ +ANALRR+M+SE+PT+AID+V + N+S +DEFIAHR
Sbjct: 12 QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
LGLIP+ S F C + C C++++ + VKC + +DV+ D+ S +H
Sbjct: 72 LGLIPIDSRNVNNYEFREKCKCKE---TCSKCTIQYIIEVKCNHSNKIDVSHYDIESLEH 128
Query: 442 TV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
VP+ + +SV + I IV L K Q L ++ IA KGIG
Sbjct: 129 EPNVPMPIPHGNKNSVSEN---AIPIVTLSKNQTLHMKLIATKGIG 171
[146][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
Length = 307
Score = 117 bits (292), Expect = 8e-25
Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 9/175 (5%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P ++I L + K L++T+ S+ N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4 PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--------MTD-STLDV 411
RLGL+PL S A R++R+CD + C CS +F L + TD +T+D
Sbjct: 64 RLGLLPLFSNFAHEFRYTRECDC---EQYCSKCSFKFSLDIYAEKFPQSIFSTDLNTIDK 120
Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
Y + P+ + SS ET D + I+I KL GQ ++L AIA+KGIG
Sbjct: 121 KENFFYQQ---INPIHY----SSLKETLDQKPILIGKLGIGQRIKLVAIAKKGIG 168
[147][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V9J5_NOSCE
Length = 233
Score = 115 bits (287), Expect = 3e-24
Identities = 74/165 (44%), Positives = 95/165 (57%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++ I E D+ +KF LRDT S ANALRR++ISEVPTV IDLVEIE+N++ L DE I+HR
Sbjct: 2 KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
LGL+PL +++ + R D C D C+ CSV L V TD + VT KDL S D
Sbjct: 62 LGLVPLYTKKDLVFR-----DDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDD 116
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V+ SS V I KL Q L++ A KG+G
Sbjct: 117 VVI-------RSSPV---------ICKLGTRQNLKVICKAFKGVG 145
[148][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 114 bits (286), Expect = 4e-24
Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Frame = +1
Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
MP +++ L D +KF + + + ++ANALRR+MI+EVPT+AID V IE NSS L DEF+A
Sbjct: 12 MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71
Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
HRLGL+P+ S+ +DC C C+V++ L V DVT D+
Sbjct: 72 HRLGLLPINSKEVDSYSDPKDCQCY---SSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPV 128
Query: 436 DHTVV------PVDFSAADSSSVETSDGR-GIIIVKLRKGQELRLRAIARKGIG 576
D P+ D + E + R GI+I KLR+ Q+L + ARKG+G
Sbjct: 129 DQGTSIPESRRPLPVPLWDRTKTEEENRRNGIVIAKLRRNQQLTMHMEARKGVG 182
[149][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GWS8_PENCW
Length = 335
Score = 113 bits (283), Expect = 9e-24
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+V +RE + + F L D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12 PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71
Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLG+IPL S + ++RDCD D C CSV L +C + +Y+
Sbjct: 72 RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARCGSG------IMSVYAR 122
Query: 436 DHTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKG 570
D VV + V T + +G +I KLRKGQE+++ +A+KG
Sbjct: 123 DLIVVGERINDKIGDPVTTDPENKGPLICKLRKGQEVKMTCLAKKG 168
[150][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 112 bits (281), Expect = 2e-23
Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+ A P +++ +L+ D M F L ++D S ANA+RRV++SE+P++AI++V + N+S
Sbjct: 1 MDWAPRQIKPSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L V C ++ V
Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCNDSNSRLV 117
Query: 412 TSKDLYSSD-HTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
T D+ D H+ +P+ AD ++ + GI IVKL++GQ + ++ A KG
Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGQSINMKLTASKG 176
Query: 571 IG 576
+G
Sbjct: 177 LG 178
[151][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
cuniculi RepID=Q8SRR5_ENCCU
Length = 240
Score = 112 bits (279), Expect = 3e-23
Identities = 64/167 (38%), Positives = 95/167 (56%)
Frame = +1
Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
M + + EL ++++F L +T ANALRR++ISEVPT+AID+VEIE N++VL DE +A
Sbjct: 1 MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60
Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
HRLGLIP+ S+R + + + C G C CSV F + V D+ V+++D+
Sbjct: 61 HRLGLIPIYSKRELKYK-----EECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCD 115
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+ V+ G +I KL + Q L+ R I RKG+G
Sbjct: 116 EEDVIIKS---------------GPVITKLARDQGLKARCIGRKGVG 147
[152][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 111 bits (278), Expect = 4e-23
Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
M+ A P ++I +L+ D M F L ++D S ANA+RRV++SE+P++AI++V + N+S
Sbjct: 1 MDWAPRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VL+DE+I+HRLGL+P+ S A F C D +C C+V++ L V C + V
Sbjct: 61 VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCKDSDSRVV 117
Query: 412 TSKDLYSSD-HTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
T D+ D H+ +P+ AD ++ + GI IVKL++G + ++ A KG
Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGHSINMKLTASKG 176
Query: 571 IG 576
+G
Sbjct: 177 LG 178
[153][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
RepID=Q4Z7P9_PLABE
Length = 331
Score = 111 bits (277), Expect = 5e-23
Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+++I+ + + M+F L +++A++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR
Sbjct: 10 KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
+GLIP+ S F C + C C+V++ + VKC + ++V+ D+ + DH
Sbjct: 70 IGLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKINVSHYDIEALDH 126
Query: 442 TV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+P+ + ++ I IV L K Q + ++ A KGIG
Sbjct: 127 EPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKLTATKGIG 172
[154][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
RepID=Q9AW23_GUITH
Length = 299
Score = 110 bits (276), Expect = 6e-23
Identities = 63/164 (38%), Positives = 94/164 (57%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+K+ ++ D +K + AN++RR+M++E+PT+AID V IE N+S DEFIAHRL
Sbjct: 1 MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GLIP+ SE A +++SR+CD + +CE CS+ F L V +S S+
Sbjct: 61 GLIPIFSENADLIKYSRECDC---ENECEKCSILFTLDVHANETEKTITSSMVKCSTACY 117
Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+ F +S + D III KL GQ ++L+A +KGIG
Sbjct: 118 PLKTFFIINNSGNSRNYDDYAIIIAKLNPGQNIKLKAYVKKGIG 161
[155][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 110 bits (275), Expect = 8e-23
Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++ + L++ +F L + D S+AN+LRR++++E+ T+AI V++ N+S L DE+IAHR
Sbjct: 5 KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL-YSSD 438
LGLIPL S + + +C+ G+C+ C++ F LRV T+ L+VTS DL D
Sbjct: 65 LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121
Query: 439 HT----VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
HT V P+ + GI I+KL KGQ++ A+KGIG
Sbjct: 122 HTDEDAVRPIKVYSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIG 171
[156][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
yoelii yoelii RepID=Q7RLX3_PLAYO
Length = 335
Score = 110 bits (274), Expect = 1e-22
Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
++I+ + + M+F L ++++++ANALRR+M+SEVPT+AID+V + N+S +DEFIAHR+
Sbjct: 15 IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GLIP+ S F C + C C+V++ + VKC + +DV+ D+ + DH
Sbjct: 75 GLIPIDSRNIKNYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 131
Query: 445 V-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+P+ + ++ I I+ L K Q + ++ A KGIG
Sbjct: 132 PNIPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKLTATKGIG 176
[157][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
chabaudi RepID=Q4XR41_PLACH
Length = 331
Score = 109 bits (273), Expect = 1e-22
Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
++I+ + + M F L +++ ++ANALRR+M+SEVPT+A+D+V + N+S +DEFIAHR+
Sbjct: 11 IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH- 441
GLIP+ S F C + C C+V++ + VKC + +DV+ D+ + DH
Sbjct: 71 GLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 127
Query: 442 ----TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+P D + ++T+ I IV L K Q L ++ A KGIG
Sbjct: 128 PNIPMPIPNDNKHNNIDKMDTA----IPIVTLSKNQTLHMKLTATKGIG 172
[158][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 106 bits (265), Expect = 1e-21
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 7/171 (4%)
Frame = +1
Query: 82 RVKIRELKD------DYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
+VKI + K + ++F+L + D S AN LRRVM++EVP + I+ V I N+SVL D
Sbjct: 28 KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87
Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSK 420
E IAHR+GL+PL S +A M+++RDC C G G C C + L+V C ++ +L V
Sbjct: 88 EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 145
Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
L D V PV +S+ G+ ++ L + QEL LR + RK I
Sbjct: 146 SLKIDDEEVYPV-----------SSEEHGVWLLTLGRSQELNLRVVIRKNI 185
[159][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 104 bits (260), Expect = 4e-21
Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG 300
F+L + D S AN LRRV+++EVP + ++ V I N+SVL DE IAHR+GL+PL S+RA
Sbjct: 21 FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80
Query: 301 MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDLYSSDHTVVPVDFSAADS 477
M+F DC C G G C C + L+V+C ++ +L V + L D V PV
Sbjct: 81 MQFFHDC-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV------- 131
Query: 478 SSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+S+ RG+ ++ L + QE+ LR + RK I
Sbjct: 132 ----SSEERGVWLLTLGRSQEINLRVLIRKSI 159
[160][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 104 bits (260), Expect = 4e-21
Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 13/179 (7%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P++ + + ++F L + ANALRRVMI+EVPT+A+D VE N+S L DE+IAH
Sbjct: 13 PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGD--GQCEYCSVEFHLRVKC--MTDSTLDVTSKDL 426
RL LIP SE A + C+ CDG G C C+V + + C +DS ++VTS DL
Sbjct: 73 RLALIPFVSEDADKFFYHSQCN-CDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131
Query: 427 -------YSSDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
++ T+ + ++ D + + I KL GQ LRL A RKGIG
Sbjct: 132 KLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGIG 190
[161][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 104 bits (259), Expect = 6e-21
Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
VK + + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSSD 438
GL+PL SE+A + F +DC C G G C C + L+V+C + S L D
Sbjct: 69 GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDD 126
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V PV +++ GI +V L + Q L L + RK I
Sbjct: 127 AEVYPV-----------SAEEHGIWLVTLGRSQVLDLHVVIRKNI 160
[162][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 104 bits (259), Expect = 6e-21
Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
VK + + F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRL
Sbjct: 9 VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSSD 438
GL+PL SE+A + F +DC C G G C C + L+V+C + S L D
Sbjct: 69 GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDD 126
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
V PV +++ GI +V L + Q L L + RK I
Sbjct: 127 AEVYPV-----------SAEEHGIWLVTLGRSQVLDLHVVIRKNI 160
[163][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 104 bits (259), Expect = 6e-21
Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Frame = +1
Query: 115 MKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 294
+ F+L + D+S ANALRRVM++E+PT+AI+ V I N+SVL DE IAHRLGL+PL SE+A
Sbjct: 19 LTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKA 78
Query: 295 MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAAD 474
+ F +DC C G G C C + L+V+C + SK ++ D + D
Sbjct: 79 KRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQI-------D 125
Query: 475 SSSV--ETSDGRGIIIVKLRKGQELRLRAIARKGI 573
S+ V +++ GI +V L + Q L L + RK I
Sbjct: 126 SAEVYPVSAEEHGIWLVTLGRSQVLDLNVLIRKNI 160
[164][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 103 bits (258), Expect = 7e-21
Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 46/221 (20%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
ME +S P + I L M F L + D + AN+LRR+M+SE+P++AI++V + N+S
Sbjct: 1 MEWSSRQLRPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
VL+DE+IAHRLGL+P+ S A + C D +C C+VE+ L VKCM D T V
Sbjct: 61 VLHDEYIAHRLGLLPIESSSARNFEYRDKCTCSD---KCSRCTVEYSLDVKCM-DDTRVV 116
Query: 412 TSKDL--------YSSDHTVVPVDFSAAD-----------------------SSSVETSD 498
T D+ + + +PV +AD + +V+ D
Sbjct: 117 THYDINLDSWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPD 176
Query: 499 G---------------RGIIIVKLRKGQELRLRAIARKGIG 576
G GI IVKL++GQ L L+ A KG+G
Sbjct: 177 GPHTGAVDRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLG 217
[165][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 103 bits (257), Expect = 1e-20
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+K+ ELK DY+ F++ DAS+ANALRR+++ E+PTVAI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS---TLDVTSKDLYSS 435
GLIP+ + + D D + + C F L VKC D +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 436 DHTVVPVDFS-----AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
D +P+ + V T D I+I KLR GQ + K IG
Sbjct: 171 DLVWIPLSDNQRKKFGKSPPKVVTDD---ILITKLRPGQSIEAILYCEKNIG 219
[166][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 103 bits (256), Expect = 1e-20
Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+K+ ELK DY+ F++ DAS+ANALRR+++ E+PTVAI+ V+I N+ V+ DE +AHRL
Sbjct: 57 IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS---TLDVTSKDLYSS 435
GLIP+ + + D D + + C F L VKC D +TSK +YS
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170
Query: 436 DHTVVPVDFS-----AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
D +P+ + V T D I+I KLR GQ + K IG
Sbjct: 171 DLVWIPLSDNQRKKFGKTPPKVVTDD---ILITKLRPGQSIEAILYCEKNIG 219
[167][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 100 bits (250), Expect = 6e-20
Identities = 69/169 (40%), Positives = 91/169 (53%), Gaps = 5/169 (2%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+KI EL DY+ F+L DA+VANALRR+++ EVPTVAI+ V+I NS V+ DE +AHRL
Sbjct: 66 IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GLIP + + + D D + + C VE + K D +TSK +YS D
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVCFKLCVECN---KYDIDDKNGITSKAIYSKDLI 182
Query: 445 VVPVDFSAAD-----SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
VP+ S SV D I+I KLR GQ + KGIG
Sbjct: 183 WVPMSESQKQIFEKKPPSVVYPD---ILITKLRPGQVIEAILYCEKGIG 228
[168][TOP]
>UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER
Length = 117
Score = 99.0 bits (245), Expect = 2e-19
Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSERAM-GMRFSRD 318
F+AHR+GLIPL S+ + ++++RD
Sbjct: 63 FLAHRIGLIPLISDDVVERLQYTRD 87
[169][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 98.6 bits (244), Expect = 3e-19
Identities = 67/165 (40%), Positives = 90/165 (54%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R++I EL D+ KF + D S+ANA+RRVMI+EVP +AI V+I N+S L+DEF+A R
Sbjct: 13 RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
LGLIPL S A + + DA D Q V F LR K + D+ L++TS+ L
Sbjct: 72 LGLIPLVSYAADSKMYDWEADADSIDDQ--KTKVVFTLRQKNLNDAPLEITSQHLEPEFG 129
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V + S GI I +L K Q + +R A KG G
Sbjct: 130 QVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVRCHALKGFG 174
[170][TOP]
>UniRef100_Q8IP63 RNA polymerase II 33kD subunit, isoform B n=1 Tax=Drosophila
melanogaster RepID=Q8IP63_DROME
Length = 117
Score = 97.8 bits (242), Expect = 5e-19
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSE 288
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[171][TOP]
>UniRef100_B3MN19 GF19666 n=1 Tax=Drosophila ananassae RepID=B3MN19_DROAN
Length = 125
Score = 97.8 bits (242), Expect = 5e-19
Identities = 47/74 (63%), Positives = 60/74 (81%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62
Query: 247 FIAHRLGLIPLTSE 288
F+AHR+GLIPL S+
Sbjct: 63 FLAHRIGLIPLISD 76
[172][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 95.9 bits (237), Expect = 2e-18
Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 18/183 (9%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV+ +L F L DAS+ANALRR++ISE+PT+AI+ V I N+SV+ DE +AHR
Sbjct: 54 RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113
Query: 262 LGLIPLTSERAMGMR-----FSRDCDACDGDGQCEYCSVEFHLRVKCM---------TDS 399
LGL+P T+ +A G+R ++ D GD +Y +V+ LR++C DS
Sbjct: 114 LGLVPFTANKA-GLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIECTRNPDAAPGEIDS 171
Query: 400 TLDVTSKDLYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
T + +++SD VP +++ ++V ++ I++ KLR GQ L + K
Sbjct: 172 TKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTN-PDILLAKLRPGQVLEMDMHMHK 230
Query: 568 GIG 576
GIG
Sbjct: 231 GIG 233
[173][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
burtonii DSM 6242 RepID=Q12ZR3_METBU
Length = 267
Score = 95.9 bits (237), Expect = 2e-18
Identities = 68/164 (41%), Positives = 88/164 (53%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+ I EL D KF L +T A+ AN +RR M+++VPT+AID V I N+SVL DE +A RL
Sbjct: 3 IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GLIPLT+ + +D CDG G C C+V L V+ V S D+ SSD
Sbjct: 63 GLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPN 119
Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V P D + I I+ LR GQ++ L AIA G G
Sbjct: 120 VQPAD--------------KNIPIIDLRVGQKVVLEAIAHMGYG 149
[174][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S4F3_TRIAD
Length = 349
Score = 95.1 bits (235), Expect = 3e-18
Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 10/181 (5%)
Frame = +1
Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
S+ + +++I ++ ++ M+F++ DAS+ANA RR+M+SEVP +AI+ V I N+S++ D
Sbjct: 42 SFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQD 101
Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTL--DVTS 417
E +AHRLGLIP+ ++ + F+ GD S+ F L++KC+ + + D T
Sbjct: 102 EVLAHRLGLIPIAADPKLFDNFN------PGDTPTNKNSITFTLQIKCIRNRSAHSDATD 155
Query: 418 -KDLYSSDHTV---VPVDFSAADSSSVETSDGR----GIIIVKLRKGQELRLRAIARKGI 573
++LY + + + ++ +++ D R I+I KLR GQE+ L I KG
Sbjct: 156 PEELYINSKVTTKDLKLKYNEDQDNAIPNKDIRPVHEDILIAKLRPGQEIDLEMICVKGT 215
Query: 574 G 576
G
Sbjct: 216 G 216
[175][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
neoformans RepID=Q5KG24_CRYNE
Length = 377
Score = 94.0 bits (232), Expect = 8e-18
Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
PR+ +R L + F L + + AN+LRRVM+++VPT+AID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 259 RLGLIPLTSER-AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S + G+R++RDCD +G C YC V L+V T S D +S
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV---TFSGNDGEQFMRVTS 138
Query: 436 DHTVV---------------PVDFSAADSSSVETSD-------GRG------IIIVKLRK 531
D V P + S D + D G+G I+I K+ K
Sbjct: 139 DMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGK 198
Query: 532 GQELRLRAIARKGI 573
GQE+ + A KGI
Sbjct: 199 GQEIDVLCKAYKGI 212
[176][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q55RL9_CRYNE
Length = 377
Score = 94.0 bits (232), Expect = 8e-18
Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
PR+ +R L + F L + + AN+LRRVM+++VPT+AID V N++ L DE IAH
Sbjct: 25 PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84
Query: 259 RLGLIPLTSER-AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
RLGLIPL S + G+R++RDCD +G C YC V L+V T S D +S
Sbjct: 85 RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV---TFSGNDGEQFMRVTS 138
Query: 436 DHTVV---------------PVDFSAADSSSVETSD-------GRG------IIIVKLRK 531
D V P + S D + D G+G I+I K+ K
Sbjct: 139 DMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGK 198
Query: 532 GQELRLRAIARKGI 573
GQE+ + A KGI
Sbjct: 199 GQEIDVLCKAYKGI 212
[177][TOP]
>UniRef100_Q46GD0 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanosarcina
barkeri str. Fusaro RepID=Q46GD0_METBF
Length = 266
Score = 94.0 bits (232), Expect = 8e-18
Identities = 65/164 (39%), Positives = 85/164 (51%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
V I EL D KF L S AN +RR MI++VPT+AI+ V + N+SVL DE +A RL
Sbjct: 5 VDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALRL 64
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
LIPL ++ + +CD C G+G C C V L + V S+DL SSD
Sbjct: 65 SLIPLVTDVETYVP-QAECDVCGGEG-CPACEVSLTL----SAEGPCTVYSRDLISSDPK 118
Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+ P D I IV+L+KGQ+L L A+A G G
Sbjct: 119 IQPAD--------------PNIPIVELKKGQKLVLEALAHMGYG 148
[178][TOP]
>UniRef100_Q2NFZ6 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosphaera
stadtmanae DSM 3091 RepID=RPOD_METST
Length = 270
Score = 93.6 bits (231), Expect = 1e-17
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
++IRE D+ F + D + N +RR+ + E+PT+AI+ V I N + + DE +AHRL
Sbjct: 3 IEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRL 62
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM--TDSTLDVTSKDLYSSD 438
GLIP+ ++ + S CD + C++C V F L+ KC DS + V SKDL S D
Sbjct: 63 GLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKCEEGNDSKI-VYSKDLKSDD 117
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V PV + I IV+LR+G+E+ L AIA G+G
Sbjct: 118 PAVKPVYDT--------------IPIVRLREGEEVELEAIAELGLG 149
[179][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 92.8 bits (229), Expect = 2e-17
Identities = 67/166 (40%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+ I E +K LRD + N+LRR ++SEVPT+A+D V I NSSV DE+I+HRL
Sbjct: 3 IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62
Query: 265 GLIPLTSERAMG-MRFSRDC-DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
GLIPL S A+ + +C +A D + C V L L V S+DL SSD
Sbjct: 63 GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
VVPV I I+KL K Q +RL A AR G G
Sbjct: 123 PDVVPVYGE--------------IPILKLIKDQSIRLEAYARLGRG 154
[180][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 92.4 bits (228), Expect = 2e-17
Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 9/173 (5%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+ + EL D M+F++ DA++ANA RR++I+EVPT+AI+ V I N++V+ DE +AHRL
Sbjct: 48 INVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRL 107
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD-------STLDVTSK- 420
GLIPLT++ + D D DG E ++EF L +KC + + LDV K
Sbjct: 108 GLIPLTADAKLFEYRQGD----DADGTPE-DTLEFELNIKCTKNLSAPKDTTDLDVLYKH 162
Query: 421 -DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+YS D +P+ + D +V+ I++ KLR G L ++ A KG+G
Sbjct: 163 HKVYSKDIKWIPLG-NQKDLLTVKPVYD-DILVAKLRPGHILDVKLHAVKGVG 213
[181][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein n=1 Tax=Babesia bovis
RepID=A7AQ72_BABBO
Length = 319
Score = 91.7 bits (226), Expect = 4e-17
Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKF----------ELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
R + E+KD +KF E+ + ++ANA+RR++++EVPT+AI+ V I N+
Sbjct: 25 RTVLDEVKDVKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTG 84
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
V+ DE +AHRLGL+P + + + + D D + C FHL+V+C +S
Sbjct: 85 VIQDEVLAHRLGLVPFDCNPDL-IPYRDNEDLSDKNSVC------FHLKVECKKESLAGR 137
Query: 412 TSKDLYSSDHTVVPVDFSAAD--SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T+ +Y+ D VP+ A+ + + I++ KL GQE+ L+A KGIG
Sbjct: 138 TNLPVYAGDMKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIG 194
[182][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 91.3 bits (225), Expect = 5e-17
Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R+ I E+ + M+F++ DA++ANA RR+M++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 51 RIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHR 110
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
LGLIP+ ++ + + + + +G E +++ L++KC + S D
Sbjct: 111 LGLIPIKADPRLFEYRNIGEEGGEEEG-TEIDTIQLQLKIKCTRNPRAPKDSSDPRELYL 169
Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
+YS D VP+ A + G I+I +LR GQEL + KGIG
Sbjct: 170 NHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQELDVVMSCVKGIG 224
[183][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
Length = 378
Score = 91.3 bits (225), Expect = 5e-17
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Frame = +1
Query: 118 KFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 297
+F L DAS+ANA RR+MI+++PT+AI+ + + N+SV+ DE + HRLGLIP T +
Sbjct: 76 QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135
Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDHTVV 450
F + G+ C+Y +VE L+VKC + + SKD +Y+ D V
Sbjct: 136 LHNFLKWYK--KGETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFV 193
Query: 451 PVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
P FS ++ D I++ K+R GQE+ L KG+G
Sbjct: 194 PKGRQAKYFSGENAIRPTNPD---ILVAKMRPGQEIDLTMHMHKGVG 237
[184][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AB
Length = 347
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
Frame = +1
Query: 61 ASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLN 240
A + + ++ + L + M+F++ DA++ NA RR++++EVPT+AI+ V I N+S++
Sbjct: 40 AKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQ 99
Query: 241 DEFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
DE +AHRLGLIP+ ++ R R S D +A + +G E +++ L++ C + S
Sbjct: 100 DEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDS 157
Query: 418 KD---------LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARK 567
D +YS D VP+ A ++ G I+I +LR GQEL + K
Sbjct: 158 SDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIK 217
Query: 568 GIG 576
GIG
Sbjct: 218 GIG 220
[185][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AA
Length = 351
Score = 90.9 bits (224), Expect = 6e-17
Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
Frame = +1
Query: 61 ASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLN 240
A + + ++ + L + M+F++ DA++ NA RR++++EVPT+AI+ V I N+S++
Sbjct: 44 AKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQ 103
Query: 241 DEFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
DE +AHRLGLIP+ ++ R R S D +A + +G E +++ L++ C + S
Sbjct: 104 DEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDS 161
Query: 418 KD---------LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARK 567
D +YS D VP+ A ++ G I+I +LR GQEL + K
Sbjct: 162 SDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIK 221
Query: 568 GIG 576
GIG
Sbjct: 222 GIG 224
[186][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 90.9 bits (224), Expect = 6e-17
Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
Frame = +1
Query: 118 KFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 297
+F L D SVANA RR+++SE+PT+AI+ V I N+S++ DE +AHRLGLIPL +RA
Sbjct: 63 QFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRAT 122
Query: 298 GMR---FSRDCDACDGD-GQCEYCSVEFHLRVKCM-------------TDSTLDVTSKDL 426
R +++ D +G G +V L+ KC TD ++
Sbjct: 123 LRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHNV 182
Query: 427 YSSDHTVVPVDFSAADSSSVE----TSDGRGIIIVKLRKGQELRLRAIARKGIG 576
Y+ D P A + S E S I+I K+R GQEL +R A KGIG
Sbjct: 183 YAKDMRFEPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIG 236
[187][TOP]
>UniRef100_Q8PV16 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosarcina mazei
RepID=RPOD_METMA
Length = 266
Score = 90.9 bits (224), Expect = 6e-17
Identities = 65/164 (39%), Positives = 85/164 (51%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
V I EL D KF L + AN +RR MI++VPT+AI+ V + N+SVL DE +A RL
Sbjct: 5 VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
LIPL ++ M +C+ C G+G C C V L + V S+DL SSD
Sbjct: 65 SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTL----SAEGPGTVYSRDLISSDPK 118
Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+ P D I IV+L+KGQ+L L AIA G G
Sbjct: 119 IQPAD--------------PNIPIVELKKGQKLVLEAIAHMGYG 148
[188][TOP]
>UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
lucius RepID=C1BYW4_ESOLU
Length = 263
Score = 90.5 bits (223), Expect = 8e-17
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R+ + ++ + M+F++ DAS+ANA RR++++EVPT+A++ V I N+S++ DE +A R
Sbjct: 51 RIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQR 110
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
LGLIP+ ++ R +A D +G E +++ L++KC + S D
Sbjct: 111 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNHQATKDSADPQELYL 165
Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
+YS D T VP+ A + G I++ KLR GQEL + KGIG
Sbjct: 166 NHMVYSKDMTWVPIGNQADVVADANIGPVHGDILLAKLRPGQELDIVMHCVKGIG 220
[189][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 90.5 bits (223), Expect = 8e-17
Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 10/174 (5%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+KI L D M F++ DAS+ NA RR++I+E+PT+AI+ V I N+S+L DE ++HRL
Sbjct: 48 IKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRL 107
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC---------MTDSTLDVTS 417
GLIPL ++ M F R + +Y +V F L VKC TD +
Sbjct: 108 GLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLN 166
Query: 418 KDLYSSDHTVVPVDFSAAD-SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
++ S + P A + + T I++ KLR GQE+ L A A GIG
Sbjct: 167 SEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIG 220
[190][TOP]
>UniRef100_C8S812 RNA polymerase insert n=1 Tax=Ferroglobus placidus DSM 10642
RepID=C8S812_FERPL
Length = 262
Score = 90.1 bits (222), Expect = 1e-16
Identities = 65/165 (39%), Positives = 88/165 (53%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V+I ++ +KF L+D+D ANA RR M S VPT+A+D V+ +N+S+L DE IAHR
Sbjct: 2 KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
+GLIPL ++ F C C+G+G C C V L V + V S DL D
Sbjct: 62 IGLIPLKTDLER-YNFQDKC-VCEGEG-CPNCQVSLRLNV----EGPKTVYSGDLIPDDP 114
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V PV I IV+L +GQ+L L A+AR G G
Sbjct: 115 EVKPV--------------YDNIPIVELYEGQQLMLEAVARLGTG 145
[191][TOP]
>UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019857F6
Length = 372
Score = 89.7 bits (221), Expect = 1e-16
Identities = 68/190 (35%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV++ L +D M+F++ D S+ANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
LGLIP+ ++ + F D + D E ++ F+L V+C L V S +L
Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLP 179
Query: 427 -----------YSSDHTVVP---VDFSAADSSSVETSDGR------GIIIVKLRKGQELR 546
+S T P FS + S E SD III KL GQE+
Sbjct: 180 HGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIE 239
Query: 547 LRAIARKGIG 576
L A A KG+G
Sbjct: 240 LEAHAVKGMG 249
[192][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 89.7 bits (221), Expect = 1e-16
Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294
F L DAS+ANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 31 FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 90
Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
+R+ R + D G +Y ++ HL VKC + +D +Y+ D
Sbjct: 91 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKD 150
Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV F D T+ I++ KLR GQ++ + KGIG
Sbjct: 151 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 199
[193][TOP]
>UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum
labreanum Z RepID=A2SSV7_METLZ
Length = 275
Score = 89.7 bits (221), Expect = 1e-16
Identities = 63/159 (39%), Positives = 84/159 (52%)
Frame = +1
Query: 100 LKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPL 279
L D +F + + ANALRR MI EVPT+AI+ + I N+SVL DE +AHRLGLIP+
Sbjct: 8 LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67
Query: 280 TSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVD 459
++ + R +C G+G C +C+V F L V + VTS DL S D VVPV
Sbjct: 68 KTD--LSQYVPRSECSCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVPVH 120
Query: 460 FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
I IVKL + Q++ L A+A G
Sbjct: 121 --------------NNIPIVKLWENQKVVLEAVAEVNYG 145
[194][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E468FB
Length = 335
Score = 89.4 bits (220), Expect = 2e-16
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R+ + L ++F++ D +VANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 35 RIDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHR 94
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM--TDSTLDVTSKDLYSS 435
LGLIP+ ++ + + + D G G+ ++EF L+VKC +++ D T D
Sbjct: 95 LGLIPIKADPRI-FEYREEGDE-TGTGE---DTIEFQLKVKCTKNPNASKDATDPDELYK 149
Query: 436 DHTVVPVDFSAADSSSVETSDG--------RGIIIVKLRKGQELRLRAIARKGIG 576
+ V F + E + G + I+I KLR GQE+ L+ KGIG
Sbjct: 150 NAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIAKLRPGQEIDLKMHCVKGIG 204
[195][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 89.4 bits (220), Expect = 2e-16
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R+ I +++DD ++F++ DAS+ANA RR+++SEVPTVA++ V + N+S++ DE +AHR
Sbjct: 50 RIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHR 109
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSS 435
LGLIP+ ++ + S D D +G E +++F L VKC + ++ D + +
Sbjct: 110 LGLIPIRADPRLFEYRSAD----DAEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYL 164
Query: 436 DHTVVPVDFSAADSSS-----VETSDGR----GIIIVKLRKGQELRLRAIARKGIG 576
+H V + ET R I+I +LR GQE+ + KGIG
Sbjct: 165 NHKVYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIG 220
[196][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
quinquefasciatus RepID=B0W725_CULQU
Length = 335
Score = 89.4 bits (220), Expect = 2e-16
Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
+ R ++ + +++ ++F++ ++ANA RR+M+SEVP++AI+ V I N+S++ DE
Sbjct: 40 FKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99
Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVTS 417
+AHRLGLIPL ++ + + + DA + ++EF L+VKC DST +VT+
Sbjct: 100 VLAHRLGLIPLKADPRLFEYKTNEGDAANAQD-----TLEFELKVKCTKKNKDST-EVTN 153
Query: 418 KDLYSSDHTV-------VPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGI 573
D +H++ VPV A+ + I+I ++R G E ++ A KG+
Sbjct: 154 NDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPIDDDILISRMRPGHEFDIKLFAVKGV 213
Query: 574 G 576
G
Sbjct: 214 G 214
[197][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 89.4 bits (220), Expect = 2e-16
Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294
F L DAS+ANA RR++ISE+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 66 FSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125
Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
+R+ R + D G +Y ++ HL V+C + +D +Y+ D
Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKD 185
Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV F D T+ I++ KLR GQ++ + KGIG
Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 234
[198][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 89.0 bits (219), Expect = 2e-16
Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV + ++++D ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHR 109
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
LGLIP+T++ R R D + + D +++F L+VKC + + S D
Sbjct: 110 LGLIPITADPRLFEYRNQGDEEGTEID------TLQFQLKVKCTWNPSAAKDSSDPNQLY 163
Query: 424 ----LYSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+Y+ T VP+ A + + D I+I +LR GQEL L KG+G
Sbjct: 164 LNHKVYTKHMTWVPLGNQADLFPEGAIRPVHD--DILITQLRPGQELDLLMHYVKGVG 219
[199][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 88.6 bits (218), Expect = 3e-16
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
ME Y R P + E K++ + F + TD S+ N LRRV+++E PT+AI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
L DEFIAHRLGLIP+ S + + D L+ + ++ + V
Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVV 106
Query: 412 TSKDLYS-SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS DL S D V PV++ +D I+I +L Q + + +KG G
Sbjct: 107 TSNDLVSIGDKRVAPVNYK---------NDVDPIVITQLGPRQNIHMVCYVKKGTG 153
[200][TOP]
>UniRef100_B1YC30 DNA-directed RNA polymerase subunit D n=1 Tax=Thermoproteus
neutrophilus V24Sta RepID=RPOD_THENV
Length = 262
Score = 88.6 bits (218), Expect = 3e-16
Identities = 65/165 (39%), Positives = 88/165 (53%)
Frame = +1
Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
MP VK+ E ++K + S+ N+LRRV+ISE+P +AID V + N+SV+ DE +A
Sbjct: 1 MPAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLA 60
Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
HRLGLIPLT+ + DC++ G C+V F L+V D + V S DL S
Sbjct: 61 HRLGLIPLTTP-LQSLPPIEDCES--GLADPSECTVRFTLQVN--ADGEVTVYSGDLVSE 115
Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
VVPV + I IVKL KGQ + L A A+ G
Sbjct: 116 RPDVVPVH--------------KDIPIVKLVKGQSIVLEAYAKLG 146
[201][TOP]
>UniRef100_O28002 DNA-directed RNA polymerase subunit D n=1 Tax=Archaeoglobus
fulgidus RepID=RPOD_ARCFU
Length = 264
Score = 88.6 bits (218), Expect = 3e-16
Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 1/168 (0%)
Frame = +1
Query: 76 MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
MP ++I E KD +KF L++ ++AN+ RR M +EVP +A+D V+I +NSS DE IA
Sbjct: 2 MPEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIA 61
Query: 256 HRLGLIPLTSERAMGMRFSRDCD-ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
HRL ++P+ + RF+ + +C G+G C C + F L V+ K +YS
Sbjct: 62 HRLAMLPI---KTYLDRFNMQSECSCGGEG-CPNCQISFRLNVE---------GPKVVYS 108
Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
DF + D V D I +++L +GQ+L L A+AR G G
Sbjct: 109 G-------DFISDDPDVVFAID--NIPVLELFEGQQLMLEAVARLGTG 147
[202][TOP]
>UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FAR4_MAIZE
Length = 372
Score = 88.2 bits (217), Expect = 4e-16
Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 19/184 (10%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+++I L +DYM+F++ DAS+ANA RR++ISEVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KIEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHR 132
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
LGLIPL ++ + S + D E ++ + L V C +S + V S +L
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPNERNTIVYKLHVSCPKNSQRITVKSSELEWLP 186
Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564
S D FS + +E G + I I +L GQ + L A A
Sbjct: 187 EGSQLSMSAPAQSGDKQKTFTSFSQSQKEILEKPLGVKYKDITIARLGPGQAIELEAHAV 246
Query: 565 KGIG 576
KG G
Sbjct: 247 KGTG 250
[203][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 88.2 bits (217), Expect = 4e-16
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
Frame = +1
Query: 52 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
ME Y R P + E K++ + F + TD S+ N LRRV+++E PT+AI LV + NSS
Sbjct: 1 MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60
Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
L DEFIAHRLGLIP+ S + + D L+ + ++ + V
Sbjct: 61 YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKKENNSNQLVVV 106
Query: 412 TSKDLYS-SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
TS DL S D V PV++ +D I+I +L Q + + +KG G
Sbjct: 107 TSNDLVSIGDKRVAPVNY---------RNDVDPIVITQLGPRQNIHMVCYVKKGTG 153
[204][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q5KIG6_CRYNE
Length = 350
Score = 88.2 bits (217), Expect = 4e-16
Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
Frame = +1
Query: 91 IRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 270
++ L ++F+L DAS+ANALRR +I+EVPTVAI+ V + N+S++ DE + HR+GL
Sbjct: 51 VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110
Query: 271 IPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD-------- 423
+PL + R++ R S + + D +V F LRV+C +D + D
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164
Query: 424 -LYSSDHTVVPV-DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+YS VP D I++VKLR GQ++ L ARKG+G
Sbjct: 165 NVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVG 217
[205][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 88.2 bits (217), Expect = 4e-16
Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V + L D +F+L DAS+ANA+RRV+++EVPTVAI+ V I N+S++ DE ++HR
Sbjct: 94 KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153
Query: 262 LGLIPLT-SERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYS 432
LGL+PL + + MR GD + +V FHL+ KC + + T D
Sbjct: 154 LGLVPLAINPDKVAMRM-------PGDEADDSNTVVFHLKAKCERNRSAARGETDPDKLY 206
Query: 433 SDHTVVPVDF----------SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
H V ADS D I+I KLR GQEL L KGIG
Sbjct: 207 IGHNVYSEQLRWDAKGGQEKDFADSPPRPVQD--KILIAKLRPGQELDLELHCEKGIG 262
[206][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 88.2 bits (217), Expect = 4e-16
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294
F L DA++ANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
+R+ R + G +Y +V HL V+C + D +Y+ D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV + + V S I++ KLR GQ++ + KGIG
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234
[207][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 88.2 bits (217), Expect = 4e-16
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294
F L DA++ANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
+R+ R + G +Y +V HL V+C + D +Y+ D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV + + V S I++ KLR GQ++ + KGIG
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234
[208][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 88.2 bits (217), Expect = 4e-16
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294
F L DA++ANA RR+MI+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT SE
Sbjct: 66 FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125
Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
+R+ R + G +Y +V HL V+C + D +Y+ D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185
Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV + + V S I++ KLR GQ++ + KGIG
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234
[209][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
marinus F1 RepID=A3DMQ6_STAMF
Length = 280
Score = 88.2 bits (217), Expect = 4e-16
Identities = 63/156 (40%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Frame = +1
Query: 115 MKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 294
++ ++D V N++RR +I+EVPT+AID V +NSSV DE+IAHRLGLIPLTSE A
Sbjct: 13 LRLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAA 72
Query: 295 MG-MRFSRDC-DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSA 468
+ + +C +A D E C V+ L K + + S DL +SD V PV
Sbjct: 73 LDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKPV---- 128
Query: 469 ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
I I+ L K QE+RL A AR G G
Sbjct: 129 ----------YDNIPIIVLGKNQEIRLEAYARLGRG 154
[210][TOP]
>UniRef100_UPI00005A0224 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 2 n=1 Tax=Canis lupus familiaris
RepID=UPI00005A0224
Length = 72
Score = 87.8 bits (216), Expect = 5e-16
Identities = 42/68 (61%), Positives = 55/68 (80%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
YA P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 247 FIAHRLGL 270
FIAHRLGL
Sbjct: 63 FIAHRLGL 70
[211][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
RepID=Q6DRM8_DANRE
Length = 343
Score = 87.8 bits (216), Expect = 5e-16
Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R++I ++ ++F++ DA++ANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 47 RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 106
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
LGL+P+ ++ R R S D + + D +++ L+VKC + S D
Sbjct: 107 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 160
Query: 424 ----LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
+YS D +P+ A + + G I++ ++R GQEL + KGIG
Sbjct: 161 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIG 216
[212][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
RepID=A2ATX1_DANRE
Length = 362
Score = 87.8 bits (216), Expect = 5e-16
Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R++I ++ ++F++ DA++ANA RR++++EVPT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 125
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
LGL+P+ ++ R R S D + + D +++ L+VKC + S D
Sbjct: 126 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 179
Query: 424 ----LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
+YS D +P+ A + + G I++ ++R GQEL + KGIG
Sbjct: 180 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIG 235
[213][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 87.8 bits (216), Expect = 5e-16
Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V I L + M FE+ DAS+ANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 46 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 105
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
+GL+P++++ M F + +Y +V F L KC + KD
Sbjct: 106 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 164
Query: 424 ---LYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+YS D P + A + V D I++ KLR GQE+ L A A GIG
Sbjct: 165 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPD---IVVAKLRPGQEIDLEAHAILGIG 219
[214][TOP]
>UniRef100_Q0W1V3 DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured
methanogenic archaeon RC-I RepID=Q0W1V3_UNCMA
Length = 262
Score = 87.8 bits (216), Expect = 5e-16
Identities = 63/163 (38%), Positives = 86/163 (52%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+++I ELKD KF L D + AN LRR MI++VP +AID V+I N+SVL DE +A R
Sbjct: 2 KLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALR 61
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
LGLIPL + M + +C+ C G G C C V + + V S D+ SSD
Sbjct: 62 LGLIPLKTNLDM-YQLQSECE-CKGAG-CSLCQV----TLSVSAEGPCVVHSSDMKSSDP 114
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
VPVD I I++L++GQ++ AR G
Sbjct: 115 ETVPVD--------------NNIPIIELKQGQKVVASGTARLG 143
[215][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 87.8 bits (216), Expect = 5e-16
Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V I L + M FE+ DAS+ANA RR++I+E+PT+A + V I N+S++ DE ++HR
Sbjct: 47 KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
+GL+P++++ M F + +Y +V F L KC + KD
Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165
Query: 424 ---LYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+YS D P + A + V D I++ KLR GQE+ L A A GIG
Sbjct: 166 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPD---IVVAKLRPGQEIDLEAHAILGIG 220
[216][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
Length = 316
Score = 87.4 bits (215), Expect = 7e-16
Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 13/183 (7%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
+ R + I D+ + FE+ + DA +AN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTLD 408
+AHRLGLIP+ ++ ++F + D + E S++F L KC D ++
Sbjct: 87 VLAHRLGLIPIIAD---PLQF---VEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIE 140
Query: 409 --VTSKDLYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
T+ ++SS P F+A V ++ III KLR+ QEL LR I K
Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSN----IIIAKLRENQELNLRLICEK 196
Query: 568 GIG 576
G+G
Sbjct: 197 GVG 199
[217][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 87.4 bits (215), Expect = 7e-16
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+VKI L D+Y F+L D S+ANA RR+MI+++PT+A++ V I N+S++ DE +AHR
Sbjct: 46 QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD--LYSS 435
LGL+PL R DA + + + S F LR+ + D T K+ +Y+
Sbjct: 106 LGLVPLVINPERINALPRGLDASEIEDYYD-DSNTFVLRLNVTCERLADGTMKNAHIYAR 164
Query: 436 DHTVVPV--------DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
D T P+ D + V D I+I KLR Q + L G G
Sbjct: 165 DITFDPMGNQCQWVKDEGLENVFKVANPD---ILIAKLRPNQSINLTMFCHLGFG 216
[218][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 87.4 bits (215), Expect = 7e-16
Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294
F L DAS+ANA RR++I+E+P++AI+ V I N+SV+ DE +AHRLGL+PLT E
Sbjct: 66 FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125
Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
+R+ R + D G +Y ++ HL V+C + D +Y+ D
Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKD 185
Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV F D T+ I++ KLR GQ++ + KGIG
Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 234
[219][TOP]
>UniRef100_Q171Q8 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
RepID=Q171Q8_AEDAE
Length = 335
Score = 86.7 bits (213), Expect = 1e-15
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++ I +++ ++F++ + ++ANA RR+M+SEVP++AI+ V I N+S++ DE +AHR
Sbjct: 45 QIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHR 104
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVTSKDLYS 432
LGLIPL RA F + D + ++EF L+VKC DST ++T+ D
Sbjct: 105 LGLIPL---RADPRLFEYKTNENDPPNALD--TLEFELKVKCTKKNKDST-EITNNDSMY 158
Query: 433 SDHTV-------VPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGIG 576
+H++ +PV A+ + I+I K+R G E ++ A KGIG
Sbjct: 159 KNHSIYSGQIKWIPVGNQASIYKEADVGPIDDDILISKMRPGHEFDIKLFAMKGIG 214
[220][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 86.7 bits (213), Expect = 1e-15
Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+K + + + FEL+ DA++ NALRR++ISEVPTVAI+ V+I N+ V+ DE +AHRL
Sbjct: 61 LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120
Query: 265 GLIP-LTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTL--DVTSKDLYSS 435
GLIP + A+ R + + D + ++ L VKC T+ +L TS +Y+
Sbjct: 121 GLIPFIVDPTALNYR-QPNQEVTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYAK 172
Query: 436 DHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
P+ S ++ + I+I KLR GQE+ L+A KG+G
Sbjct: 173 HIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVG 221
[221][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
Length = 316
Score = 86.7 bits (213), Expect = 1e-15
Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 13/183 (7%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
+ R + I D+ + FE+ + DA +AN+LRR+MI+E+PT+AI V++ N+SV+ DE
Sbjct: 27 FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86
Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTLD 408
+AHRLGLIP+ ++ ++F + D + E S++F L KC D ++
Sbjct: 87 VLAHRLGLIPIIAD---PLQF---IEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPIE 140
Query: 409 --VTSKDLYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
T+ ++SS P F+A V ++ III KLR+ QEL LR I K
Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSN----IIIAKLRENQELNLRLICEK 196
Query: 568 GIG 576
G+G
Sbjct: 197 GVG 199
[222][TOP]
>UniRef100_B5IWT9 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
barophilus MP RepID=B5IWT9_9EURY
Length = 258
Score = 86.7 bits (213), Expect = 1e-15
Identities = 64/165 (38%), Positives = 83/165 (50%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++K+ E ++D ++F L DA+ ANALRRV+I EVPT A+D VE N S L DE IAHR
Sbjct: 2 KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
L +IPLT+ RF D D E+ + + + V S DL S D
Sbjct: 62 LAMIPLTTPYD---RFELDALELD----------EYTVTLSLEAEGPGVVYSGDLKSDDP 108
Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V PV I IVKL +GQ+L L A A+ G G
Sbjct: 109 DVKPVT--------------PNIPIVKLAEGQKLTLNAYAKLGRG 139
[223][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
salar RepID=B5X7Z3_SALSA
Length = 353
Score = 86.3 bits (212), Expect = 2e-15
Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
R+ + ++ + ++F++ DA++ANA RR++++EVPT+A++ V I N+S++ DE +AHR
Sbjct: 57 RIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHR 116
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
LGLIP+ ++ R +A D +G E +++ L++KC + S D
Sbjct: 117 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNPRATKDSADPRELYL 171
Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
+YS D P+ A + G I++ +LR GQEL + KGIG
Sbjct: 172 NHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQELDIVMHCVKGIG 226
[224][TOP]
>UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1
Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH
Length = 336
Score = 86.3 bits (212), Expect = 2e-15
Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 16/174 (9%)
Frame = +1
Query: 103 KDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 282
K+ ++F+L DA +ANALRR+MI+EVPT+AI V I N+S++ DE +AHRLGLIP+
Sbjct: 54 KNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIY 113
Query: 283 SERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--------MTDSTLDVTSKDLYSSD 438
++ + + D E S++F L++KC +++ L+ + + Y +
Sbjct: 114 ADPRLFEEKQEE------DEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLEN 167
Query: 439 HTVVPVDF----SAADSSSVETSDGR----GIIIVKLRKGQELRLRAIARKGIG 576
V DF + E + R II+ KLR+ QE+ I +KGIG
Sbjct: 168 AIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIG 221
[225][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
Length = 344
Score = 86.3 bits (212), Expect = 2e-15
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
+ R ++ I L D M+F++ + ++ANA+RR++++EVPT+A D V + N+S++ DE
Sbjct: 42 FERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDE 101
Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSK 420
+AHR+GL+P + M +D + D +VEF L+VKC + + D T+
Sbjct: 102 VLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPKDATTP 155
Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGR--------GIIIVKLRKGQELRLRAIARKGIG 576
D DH V + S G II+ KLR GQE+ L+ KG G
Sbjct: 156 DELYKDHVVYTRHLTWTPIGSQAEIFGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTG 215
[226][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
Length = 291
Score = 86.3 bits (212), Expect = 2e-15
Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+KI E + ++F+ D SVAN LRR+MI+EVPT+AI++V +E NSS + DE + HRL
Sbjct: 8 IKISE-SPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66
Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
GLIP+ ++ +F +D D E ++ F L V C DS + + +YSSD
Sbjct: 67 GLIPILAD-PRKFKFPKDRHFTD---PTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLI 122
Query: 445 VVP---VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
P + + AD D I+I +L+ Q ++ + KGIG
Sbjct: 123 WEPQGEQETTFADCPIKPVFD--DILIAELQPHQHIKCKLFCCKGIG 167
[227][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 85.5 bits (210), Expect = 3e-15
Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 15/180 (8%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV + ++D ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
LGLIP+ ++ R R D + + D +++F L++KC + S D
Sbjct: 110 LGLIPIRADPRLFEYRNQGDQEGTEID------TLQFQLKIKCKRNPQAAKESSDPDELY 163
Query: 424 ----LYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+YS T VP+ F AD V I+I LR GQE+ + KGIG
Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDD----ILIALLRPGQEIDVLMHCVKGIG 219
[228][TOP]
>UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum
RepID=UPI000175846B
Length = 338
Score = 85.5 bits (210), Expect = 3e-15
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 10/175 (5%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV I +++ ++F+L +AN RR+M+S+VPT+AI+ V I N+S++ DE +AHR
Sbjct: 44 RVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHR 103
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMT--DSTLD-VTSKDLY 429
LGLIPL ++ R M+ R +G E ++EF L++KC DS+ D + ++D+Y
Sbjct: 104 LGLIPLKADPRLFEMKTDRKSSTAEG---TEQDTLEFALKIKCTNNKDSSKDSLRAEDMY 160
Query: 430 SSDHTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+++ VP+ S V I+I K+R G EL L+ +A K G
Sbjct: 161 KNNNVYSKHIKWVPIGKQKERFSDVGPIH-PDILIAKMRPGHELDLKLLAVKSNG 214
[229][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Monodelphis domestica RepID=UPI0000F2C148
Length = 346
Score = 85.5 bits (210), Expect = 3e-15
Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 13/183 (7%)
Frame = +1
Query: 67 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
+ R RV + + ++ ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE
Sbjct: 45 FEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDE 104
Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
+AHRLGLIP+ ++ R R D D + D +++F L+VKC + S D
Sbjct: 105 ILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------TLQFQLKVKCTRNPQAAKDSSD 158
Query: 424 ---------LYSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
+Y+ T +P+ A + + D I+I +LR GQEL L K
Sbjct: 159 PNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHD--DILIAQLRPGQELDLLMHCVK 216
Query: 568 GIG 576
GIG
Sbjct: 217 GIG 219
[230][TOP]
>UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7PPN8_ANOGA
Length = 261
Score = 85.5 bits (210), Expect = 3e-15
Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 12/183 (6%)
Frame = +1
Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
S+ R ++ + ++ ++F++ ++AN RR+M+SEVP++AI+ V I N+S++ D
Sbjct: 1 SFKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQD 60
Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVT 414
E +AHRLGLIPL ++ M + A + D ++EF L+VKC DST +VT
Sbjct: 61 EVLAHRLGLIPLRADPRM-----FEYKANETDPPSALDTLEFELKVKCTRKNKDST-EVT 114
Query: 415 SKDLYSSDHTV-------VPVDFSAA--DSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
+ + +H++ VP+ A ++V D I+I K+R G E ++ A K
Sbjct: 115 NNENMYKNHSIYSGQIKWVPIGNQATIYTEAAVGPIDD-DILISKMRPGHEFDIKLFAVK 173
Query: 568 GIG 576
G+G
Sbjct: 174 GVG 176
[231][TOP]
>UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2
Tax=Aspergillus RepID=B8NHK8_ASPFN
Length = 373
Score = 85.5 bits (210), Expect = 3e-15
Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 18/170 (10%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERA 294
F L DAS+ANA RR++++EVP+VAI+ V + N+SV+ DE +A RLGLIPL + +
Sbjct: 66 FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGI 125
Query: 295 MGMRFSRDC--DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDH 441
MR+ + D +G +Y ++ L ++C + D T D +Y+ D
Sbjct: 126 NWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDI 185
Query: 442 TVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
T PV F+ D+ D I+I KLR GQ++ L KGIG
Sbjct: 186 TFHPVGRQEQFFTGEDAIQPVNPD---ILIAKLRPGQKIDLEMHCIKGIG 232
[232][TOP]
>UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella
RepID=C8TDY9_EIMTE
Length = 147
Score = 85.1 bits (209), Expect = 4e-15
Identities = 43/78 (55%), Positives = 60/78 (76%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+++ EL + ++F L + DAS+ANALRRVMISEVPT+AIDLV + N+SVL+DE+I HRL
Sbjct: 44 IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103
Query: 265 GLIPLTSERAMGMRFSRD 318
GL+P+ S +G +RD
Sbjct: 104 GLLPIDSSN-VGNFVARD 120
[233][TOP]
>UniRef100_B4KGY1 GI17014 n=1 Tax=Drosophila mojavensis RepID=B4KGY1_DROMO
Length = 333
Score = 85.1 bits (209), Expect = 4e-15
Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 12/181 (6%)
Frame = +1
Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
+++ V +R ++ ++F+L ++ANA RR+M+SEVP++AI+ V I N+S++ DE
Sbjct: 38 SKLQVVIVRNDEEHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97
Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKD 423
+AHR+GL+PL RA F+ D G E ++E+ L+VKC D++ D ++ D
Sbjct: 98 LAHRMGLLPL---RADPRLFAYRTDESTDQG-TEQDTLEYELKVKCTRRKDASKDQSNFD 153
Query: 424 -------LYSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIARKGI 573
+YS +P A S E+S G I+I +LR G EL LR IA KGI
Sbjct: 154 DIYRNHKVYSGHLKWLPKGKQAQIYS--ESSVGCIHEDILIAQLRPGHELDLRLIAVKGI 211
Query: 574 G 576
G
Sbjct: 212 G 212
[234][TOP]
>UniRef100_UPI00019261EE PREDICTED: similar to DNA-directed RNA polymerases I and III
subunit RPAC1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019261EE
Length = 354
Score = 84.7 bits (208), Expect = 5e-15
Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 16/181 (8%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++ + +L + M+F++ DAS+ANA RR++I+EVPT+AI+ V I N++++ DE +AHR
Sbjct: 48 KIDVIKLNQNEMEFDMIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHR 107
Query: 262 LGLIPLTSE----RAMGMRFSRDCDACDGDGQC--EYCSVEFHLRVKCMTD--STLDVTS 417
LGLIP+ ++ + + D + E+ + F L++KC + ++ D T
Sbjct: 108 LGLIPILADPREFNFPPAKLEDESKLTDEERLAVDEHHHLVFELKIKCSKNPKASSDATD 167
Query: 418 KDLYSSDHTV-------VPVDFSAAD-SSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
D+ ++ V +P+ A S+++ I+I KLR GQEL +R KGI
Sbjct: 168 PDVLYLNNKVMTKHMKWIPIGRQAEKFSTNIVRPVFDDILIAKLRPGQELDIRMHCVKGI 227
Query: 574 G 576
G
Sbjct: 228 G 228
[235][TOP]
>UniRef100_UPI00017936CF PREDICTED: similar to DNA-directed RNA polymerase n=1
Tax=Acyrthosiphon pisum RepID=UPI00017936CF
Length = 325
Score = 84.7 bits (208), Expect = 5e-15
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
++ I D+ ++F+L D +VAN+LRRV+ISEVP++AI+ V I N+S + DE +AHR
Sbjct: 33 KINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHR 92
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV------TSK 420
LGLIPL ++ R M+ + + + D S+ + +++KC T LD S
Sbjct: 93 LGLIPLKADPRQFKMKEDENSEPNEHD------SLVYEMKIKC-TKKDLDALAHKQFISF 145
Query: 421 DLYSSDHTVVPV----DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
+Y+ +P+ D + + D I+I KLR GQE+ L+ A KGI
Sbjct: 146 PVYAKHIKWLPLGNQKDIFTEKDVGIISDD---ILIAKLRPGQEIELKMFAVKGI 197
[236][TOP]
>UniRef100_Q29L21 GA17664 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=Q29L21_DROPS
Length = 333
Score = 84.7 bits (208), Expect = 5e-15
Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V I +D ++F++ ++ANA RR+M+SEVP++AI+ V I N+S++ DE +AHR
Sbjct: 42 QVAIVRNDEDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHR 101
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYS 432
+GL+PL ++ R R G+ E ++E+ L+VKC D++ D ++ D
Sbjct: 102 MGLLPLKADPRLFAYRTEE-----SGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIY 156
Query: 433 SDHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+H V +P A S S+ I+I +LR G EL LR +A KG+G
Sbjct: 157 KNHKVYSGHLKWLPKGKQAQIYSESMVNCIHEDILIAQLRPGHELDLRLVAVKGLG 212
[237][TOP]
>UniRef100_A8Q352 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8Q352_MALGO
Length = 270
Score = 84.7 bits (208), Expect = 5e-15
Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 14/136 (10%)
Frame = +1
Query: 205 LVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRV 381
+VEI +N++VL DEF+AHRLG+IPL S + A + R+C DG C+ CSVE L
Sbjct: 1 MVEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDG---CDRCSVELSLDA 57
Query: 382 KCMTD-STLDVTSKDL---------YSSDHTVVPVDFSAADSSSVETSD---GRGIIIVK 522
C +D + VTSKDL YS + PV D D G++IV+
Sbjct: 58 LCTSDRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFGKPVGQDDPNANGVVIVQ 117
Query: 523 LRKGQELRLRAIARKG 570
LRKGQ ++ R IARKG
Sbjct: 118 LRKGQHIKARCIARKG 133
[238][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
Tax=Gallus gallus RepID=UPI00003ACD10
Length = 346
Score = 84.3 bits (207), Expect = 6e-15
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 15/180 (8%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV + +D ++F++ DA++ANA RR++++EVPT+A++ V + N+S++ DE +AHR
Sbjct: 50 RVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109
Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
LGLIP+ ++ R R D + + D +++F L++KC + S D
Sbjct: 110 LGLIPIRADPRLFEYRNQGDEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELY 163
Query: 424 ----LYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+YS T VP+ F AD V I+I LR GQE+ + KGIG
Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDD----ILIALLRPGQEIDVLMHCVKGIG 219
[239][TOP]
>UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q9B1_VITVI
Length = 362
Score = 84.3 bits (207), Expect = 6e-15
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 17/182 (9%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
RV++ L +D M+F++ D S+ANA RR++I+E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 66 RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTL-----D 408
LGLIP+ ++ + F D + D E ++ F+L V+C +T +
Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTGMVIVLCIYA 179
Query: 409 VTSKDLYSSDHTVVPVDFSAADSSSVETSDGR------GIIIVKLRKGQELRLRAIARKG 570
V + + S++ +P + S E SD III KL GQE+ L A A KG
Sbjct: 180 VLNNAVKSNELKWLP--HGSDQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKG 237
Query: 571 IG 576
+G
Sbjct: 238 MG 239
[240][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
RepID=B2A971_PODAN
Length = 372
Score = 84.3 bits (207), Expect = 6e-15
Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Frame = +1
Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG 300
F L DAS+ANA RR+MI++VPT+AI+ V + N+SV+ DE +AHRLGLIP T R
Sbjct: 66 FSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGREGL 125
Query: 301 MRFSR-DCDACDGD-GQC-EYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDHT 444
F + +GD +C ++ +V L VKC + D D +Y+ D
Sbjct: 126 TDFLKWYRKPANGDPAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKDIV 185
Query: 445 VVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
P+ FS D D I+I KLR GQE+ ++ KG+G
Sbjct: 186 FKPIGRQVDYFSGEDIIRPVNPD---ILIAKLRPGQEINVQMHMHKGVG 231
[241][TOP]
>UniRef100_Q10MU3 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU3_ORYSJ
Length = 352
Score = 84.0 bits (206), Expect = 8e-15
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V + L +D M+F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
LGLIPL ++ + S + D E ++ + L V C S L V S DL
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186
Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564
S D FS + +E G + I I +L GQ + L A
Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246
Query: 565 KGIG 576
KGIG
Sbjct: 247 KGIG 250
[242][TOP]
>UniRef100_Q10MU2 Os03g0295400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU2_ORYSJ
Length = 379
Score = 84.0 bits (206), Expect = 8e-15
Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V + L +D M+F++ DAS+ANA RR++I+EVPT+AI+ V + N+SV+ DE ++HR
Sbjct: 73 KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
LGLIPL ++ + S + D E ++ + L V C S L V S DL
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186
Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564
S D FS + +E G + I I +L GQ + L A
Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246
Query: 565 KGIG 576
KGIG
Sbjct: 247 KGIG 250
[243][TOP]
>UniRef100_B4NW96 GE11271 n=1 Tax=Drosophila yakuba RepID=B4NW96_DROYA
Length = 333
Score = 84.0 bits (206), Expect = 8e-15
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
Frame = +1
Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
+Y +KI + +D ++F+L ++ANA RR+M+S+VP++AI+ V I N+S++ D
Sbjct: 36 AYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQD 95
Query: 244 EFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVT 414
E +AHR+GL+PL ++ R R +A E ++EF L+VKC D+ D +
Sbjct: 96 EVLAHRMGLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQS 150
Query: 415 SKDLYSSDHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
+ D +H V +P A + S I+I +LR G EL LR +A KG
Sbjct: 151 NFDDIYKNHKVYSGHLKWLPKGKQAQIYNESAVNCIHDDILIAQLRPGHELDLRLVAVKG 210
Query: 571 IG 576
+G
Sbjct: 211 LG 212
[244][TOP]
>UniRef100_B4LUA3 GJ24400 n=1 Tax=Drosophila virilis RepID=B4LUA3_DROVI
Length = 333
Score = 84.0 bits (206), Expect = 8e-15
Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
Frame = +1
Query: 70 ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
+++ V +R +++ ++F+L ++ANA RR+M+SEVP++AI+ V I N+S++ DE
Sbjct: 38 SKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97
Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKD 423
+AHR+GL+PL RA F+ + G E ++E+ L+VKC D++ D ++ D
Sbjct: 98 LAHRMGLLPL---RADPRLFAYRTEESTEQG-TEQDTLEYELKVKCTRRKDASKDQSNFD 153
Query: 424 LYSSDHTVVPVDFS---AADSSSVETSDGRG-----IIIVKLRKGQELRLRAIARKGIG 576
+H V + T + G I+I +LR G EL LR IA KG+G
Sbjct: 154 DIYKNHKVYSGHLKWLPKGKQGQIYTENSVGCIHEDILIAQLRPGHELDLRLIAVKGLG 212
[245][TOP]
>UniRef100_B3N4C9 GG25034 n=1 Tax=Drosophila erecta RepID=B3N4C9_DROER
Length = 329
Score = 84.0 bits (206), Expect = 8e-15
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+KI + +D ++F+L ++ANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+
Sbjct: 39 IKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 98
Query: 265 GLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYSS 435
GL+PL ++ R R +A E ++EF L+VKC D+ D ++ D
Sbjct: 99 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 153
Query: 436 DHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+H V +P A S S I+I +LR G EL LR +A KG+G
Sbjct: 154 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLG 208
[246][TOP]
>UniRef100_Q0UUA6 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UUA6_PHANO
Length = 350
Score = 84.0 bits (206), Expect = 8e-15
Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+VK F L D SVANA RR++++E+PT+AI+ V I N+S++ DE +AHR
Sbjct: 27 KVKFHTHSPHDTSFSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQNTSIIQDEVLAHR 86
Query: 262 LGLIPLTSERAMGMR----FSRDCDACDGDG-QCEYCSVEFHLRVKCM------------ 390
LGLIPL G+R + ++ D +G G +Y +V L V+C
Sbjct: 87 LGLIPLCGSH-KGLRWLKWYKKETDDDEGSGTPSDYNTVIMKLDVECSWQEGGLQRAVQG 145
Query: 391 -TDSTLDVTSKDLYSSDHTVVPV--DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIA 561
TD ++Y+ D P+ F S + I+IVK+R GQ+++L A
Sbjct: 146 ETDPDKLYIGHNVYAKDLVWEPLGKQFDEFPSGEEIRATNPDILIVKMRPGQKIQLSMHA 205
Query: 562 RKGIG 576
KGIG
Sbjct: 206 IKGIG 210
[247][TOP]
>UniRef100_C5A249 DNA-directed RNA polymerase subunit D (RpoD) n=1 Tax=Thermococcus
gammatolerans EJ3 RepID=C5A249_THEGJ
Length = 260
Score = 84.0 bits (206), Expect = 8e-15
Identities = 62/166 (37%), Positives = 82/166 (49%)
Frame = +1
Query: 79 PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
P+ +I E ++D +KF LR D ANALRR +++EVPT A+D VE N S L DE IAH
Sbjct: 3 PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62
Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
RL +IPLT+ RFS D D ++ + + + V S DL S D
Sbjct: 63 RLAMIPLTTPVE---RFSLDALELD----------DYTVTLSLQAEGPGMVYSGDLKSDD 109
Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
V P + I IVKL +GQ+L A A+ G G
Sbjct: 110 EGVKPAN--------------PNIPIVKLAEGQKLTFNAYAKLGRG 141
[248][TOP]
>UniRef100_UPI000186EDAD DNA-directed RNA polymerase I 40 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186EDAD
Length = 347
Score = 83.6 bits (205), Expect = 1e-14
Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
Frame = +1
Query: 82 RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
+V I +L D M+F+L + +VANA RR+++SEVP++AI+ V + N++++ DE +AHR
Sbjct: 44 KVVIVKLNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHR 103
Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS---KDLYS 432
LGL+PL ++ + S + + + E ++EF L++KC + S DLY
Sbjct: 104 LGLVPLKADSRLFEYRSENSNEPN-----EQDTLEFELKIKCSVNKEGHKNSYQIDDLY- 157
Query: 433 SDHTVVP-----VDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIARKGIG 576
+H+V V + ++ E + G I++ KLR GQEL L+ A KG+G
Sbjct: 158 INHSVYSKHLKWVPIGSQGTTYDEKNIGPVLPDILLNKLRPGQELDLKLHAVKGLG 213
[249][TOP]
>UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TAS0_SOYBN
Length = 388
Score = 83.6 bits (205), Expect = 1e-14
Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
Frame = +1
Query: 64 SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
S+ +V+++ L D ++F++ D ++ANA RR++I+EVPT+AI+ V I N+SV+ D
Sbjct: 76 SFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQD 135
Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
E ++HRLGLIP+ ++ + F +A GD + E ++ F L V+C D
Sbjct: 136 EVLSHRLGLIPIRADPRL---FEYPENA--GDDKNEKNTIVFKLHVRCQVGQPRITVKSD 190
Query: 424 L--YSSDHTVVPVD---------------FSAADSSSVETSDGR------GIIIVKLRKG 534
+ + + +P + F+ + S E S+ II+ KL G
Sbjct: 191 KLKWLPNGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPG 250
Query: 535 QELRLRAIARKGIG 576
QE+ L A A KGIG
Sbjct: 251 QEIELEAHAVKGIG 264
[250][TOP]
>UniRef100_Q9VMX3 CG3756 n=1 Tax=Drosophila melanogaster RepID=Q9VMX3_DROME
Length = 333
Score = 83.6 bits (205), Expect = 1e-14
Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
Frame = +1
Query: 85 VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
+KI +D ++F+L ++ANA RR+M+S+VP++AI+ V I N+S++ DE +AHR+
Sbjct: 43 IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102
Query: 265 GLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYSS 435
GL+PL ++ R R +A E ++EF L+VKC D+ D ++ D
Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157
Query: 436 DHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
+H V +P A S S I+I +LR G EL LR +A KG+G
Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLG 212