BB906274 ( RCE04463 )

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[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
           RepID=Q2MGQ5_MEDTR
          Length = 318

 Score =  310 bits (794), Expect = 5e-83
 Identities = 159/175 (90%), Positives = 163/175 (93%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS
Sbjct: 1   MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRVKC+TD TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           +SKDL SSDHTV PVD    D+S    SDGRGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 SSKDLISSDHTVTPVDVPGGDASI--ESDGRGIIIVKLRRGQELRLRAIARKGIG 173

[2][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
           communis RepID=B9RYB6_RICCO
          Length = 318

 Score =  308 bits (788), Expect = 3e-82
 Identities = 155/175 (88%), Positives = 164/175 (93%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           MEGASY R PR+KIRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQC+YCSVEFHLR KC+TD TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TSKDLYSSDHTVVPVDFS  DSS  ++S+ RGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLYSSDHTVVPVDFS--DSSGYDSSEQRGIIIVKLRRGQELRLRAIARKGIG 173

[3][TOP]
>UniRef100_Q45NH1 DNA-directed RNA polymerase II third largest subunit (Fragment) n=1
           Tax=Medicago sativa RepID=Q45NH1_MEDSA
          Length = 184

 Score =  301 bits (770), Expect = 3e-80
 Identities = 155/170 (91%), Positives = 160/170 (94%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPT+AIDLVEIEVNSSVLNDE
Sbjct: 1   YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60

Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL 426
           FIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCEYCSVEFHLRVKC+TD TLDV+SKDL
Sbjct: 61  FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120

Query: 427 YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            SSDHTV PVD    D +SVE SDGRGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 ISSDHTVTPVDVPGGD-ASVE-SDGRGIIIVKLRRGQELRLRAIARKGIG 168

[4][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7P9N6_VITVI
          Length = 318

 Score =  300 bits (767), Expect = 7e-80
 Identities = 150/175 (85%), Positives = 162/175 (92%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           MEG SY R P++KIRE+KDDY KFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KCMTD TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TSKDL SSDHTVVPVDFS  DSS  +++D +GIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLISSDHTVVPVDFS--DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIG 173

[5][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
           RepID=A5B429_VITVI
          Length = 318

 Score =  300 bits (767), Expect = 7e-80
 Identities = 150/175 (85%), Positives = 162/175 (92%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           MEG SY R P++KIRE+KDDY KFELR+TDAS+ANALRRVMI+EVPTVAIDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEFHLR KCMTD TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TSKDL SSDHTVVPVDFS  DSS  +++D +GIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLISSDHTVVPVDFS--DSSGYDSADKKGIIIVKLRRGQELRLRAIARKGIG 173

[6][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
          Length = 346

 Score =  294 bits (752), Expect = 4e-78
 Identities = 147/178 (82%), Positives = 159/178 (89%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           ME  SY R P++KIRE+KDDY+KFELR+TDAS+ANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLR KC+TD TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDF---SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TSKDLYSSDH V+PVDF   S A+     T   RGIIIVKLR+GQELRLRAIARKGIG
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQELRLRAIARKGIG 178

[7][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
           thaliana RepID=RPB3A_ARATH
          Length = 319

 Score =  283 bits (725), Expect = 5e-75
 Identities = 142/175 (81%), Positives = 159/175 (90%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+GA+Y R P++KIRELKDDY KFELR+TD S+ANALRRVMISEVPTVAIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLIPLTSERAM MRFSRDCDACDGDGQCE+CSVEF L  KC+TD TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS+DLYS+D TV PVDF+  DSS  ++S+ +GIIIVKLR+GQEL+LRAIARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIG 174

[8][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
           Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
          Length = 319

 Score =  280 bits (717), Expect = 4e-74
 Identities = 141/175 (80%), Positives = 158/175 (90%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+GA+Y R P++KIRELKDDY KFELR+TD S+ANALRRVMISEVPTVAIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIAHRLGLI LTSERAM MRFSRDCDACDGDGQCE+CSVEF L  KC+TD TLDV
Sbjct: 61  VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS+DLYS+D TV PVDF+  DSS  ++S+ +GIIIVKLR+GQEL+LRAIARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-IDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIG 174

[9][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SHD1_PHYPA
          Length = 324

 Score =  264 bits (675), Expect = 3e-69
 Identities = 130/177 (73%), Positives = 152/177 (85%), Gaps = 2/177 (1%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+  SY R P V+IR++KDD +KFELRDTDAS+ANALRR+MI+EVPT+AIDLVEIE NSS
Sbjct: 1   MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEF+AHRLGLIP+ S+RAM MR SRDCDACDGDG+CEYCS+EFHL VKC  D TLDV
Sbjct: 61  VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFS--AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS DL SSD +++PVD +  AAD    E++D RGI+IVKLRKGQEL+LRAIARKGIG
Sbjct: 121 TSLDLVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQELKLRAIARKGIG 177

[10][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
           RepID=A8MR04_ARATH
          Length = 235

 Score =  253 bits (645), Expect = 1e-65
 Identities = 126/175 (72%), Positives = 151/175 (86%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+G +Y R P VKIRELKDDY KFELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIA RL LIPLTSERAM MRF +DC+ C+GD  CE+CSVEF L  KC+TD TLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS+DLYS+D TV PVDF+ ++SS+ ++S+ +GIII KLR+GQEL+L+A+ARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIG 174

[11][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
           thaliana RepID=RPB3B_ARATH
          Length = 319

 Score =  253 bits (645), Expect = 1e-65
 Identities = 126/175 (72%), Positives = 151/175 (86%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+G +Y R P VKIRELKDDY KFELR+TD S+ANALRRVMISEVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VLNDEFIA RL LIPLTSERAM MRF +DC+ C+GD  CE+CSVEF L  KC+TD TLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS+DLYS+D TV PVDF+ ++SS+ ++S+ +GIII KLR+GQEL+L+A+ARKGIG
Sbjct: 121 TSRDLYSADPTVTPVDFT-SNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIG 174

[12][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
          Length = 330

 Score =  252 bits (644), Expect = 1e-65
 Identities = 134/183 (73%), Positives = 146/183 (79%), Gaps = 10/183 (5%)
 Frame = +1

Query: 58  GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
           G SY R PRV+IRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 7   GVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 66

Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414
           NDEFIAHRLGLIPLTS  AM MRFSRDCDACDGDG CEYCSVEFHL  +   +D TL+VT
Sbjct: 67  NDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 126

Query: 415 SKDLYSSDHTVVPVDFSAA---------DSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
           S DL S+D  V PVD + A            +   +D RGI+IVKLR+GQELRLRAIARK
Sbjct: 127 SNDLRSTDPKVCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLRAIARK 186

Query: 568 GIG 576
           GIG
Sbjct: 187 GIG 189

[13][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
           bicolor RepID=C5X7D7_SORBI
          Length = 328

 Score =  251 bits (642), Expect = 2e-65
 Identities = 136/183 (74%), Positives = 147/183 (80%), Gaps = 10/183 (5%)
 Frame = +1

Query: 58  GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
           GASY R PRV+IR+LKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 6   GASYQRFPRVRIRDLKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65

Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414
           NDEFIAHRLGLIPLTS  AM MRFSRDCDACDGDG CEYCSVEFHL  +   +D TL+VT
Sbjct: 66  NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTLEVT 125

Query: 415 SKDLYSSDHTVVPVDFSAA--------DSSSVETS-DGRGIIIVKLRKGQELRLRAIARK 567
           S DL S D  V PVD + A        D     TS + RGI+IVKLR+GQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQQALGGTDPFGANTSNENRGILIVKLRRGQELRLRAIARK 185

Query: 568 GIG 576
           GIG
Sbjct: 186 GIG 188

[14][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
           mays RepID=B6TCC3_MAIZE
          Length = 328

 Score =  251 bits (640), Expect = 4e-65
 Identities = 134/183 (73%), Positives = 147/183 (80%), Gaps = 10/183 (5%)
 Frame = +1

Query: 58  GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
           G SY R PRV+IRELKDDY KFELRDTDAS+ANALRRVMI+EVPTVAIDLVEIEVNSSVL
Sbjct: 6   GTSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVL 65

Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM-TDSTLDVT 414
           NDEFIAHRLGLIPLTS  AM MRFSRDCDACDGDG CEYCSVEFHL V    +D TL+VT
Sbjct: 66  NDEFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVT 125

Query: 415 SKDLYSSDHTVVPVDFSAADSSSV---------ETSDGRGIIIVKLRKGQELRLRAIARK 567
           S DL S D  V PVD + A   ++          +++ RGI+IVKLR+GQELRLRAIARK
Sbjct: 126 SNDLRSMDPKVCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185

Query: 568 GIG 576
           GIG
Sbjct: 186 GIG 188

[15][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9SM40_PHYPA
          Length = 385

 Score =  178 bits (452), Expect = 2e-43
 Identities = 97/175 (55%), Positives = 120/175 (68%), Gaps = 2/175 (1%)
 Frame = +1

Query: 58  GASYARMPRVKIRELKD--DYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           G SY R+P V I E     + ++F+L +TD S+AN+LRR M+ EVPT+A DLVEIE+NSS
Sbjct: 17  GVSYHRLPTVSIMESMSSRNVLRFKLENTDVSMANSLRRCMMVEVPTLAFDLVEIEMNSS 76

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VL DEFIAHRLGLIPLTS+RAM M F  +CD+C GD  C+ C+VEF L VK   D   DV
Sbjct: 77  VLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFLLSVKATEDRIKDV 136

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           T +DL SS+  VVPV+    D   V       I I KL KGQE+ LRA+A+KG+G
Sbjct: 137 TQRDLKSSNDAVVPVEID-VDKQGVLEECKMDICIAKLYKGQEITLRALAKKGMG 190

[16][TOP]
>UniRef100_UPI0000E4A699 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
           purpuratus RepID=UPI0000E4A699
          Length = 275

 Score =  171 bits (433), Expect = 4e-41
 Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P +++ EL DD +KF + DTD SVAN++RR +++EVPT+AID VEI+ NSSVL+DE
Sbjct: 3   YANQPTIQLTELTDDNVKFIIEDTDLSVANSIRRTILAEVPTIAIDWVEIQANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FI+HR+GLIPLTS+  +  + F+RDC     +  C  CSVE  L VKC  D T  VTS+D
Sbjct: 63  FISHRVGLIPLTSDEVVDKLNFNRDCGC---EEFCSDCSVELSLDVKCTDDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  VVPV     +SS     D   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LLSSNQKVVPVPSRNQESSDYGEVD--DILIVKLRKGQELRLRAYAKKGFG 168

[17][TOP]
>UniRef100_Q7ZV11 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Danio
           rerio RepID=Q7ZV11_DANRE
          Length = 275

 Score =  171 bits (433), Expect = 4e-41
 Identities = 91/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPLTS+  +  M++SRDC     D  C  CSVE  L V+C  D T  VTS+D
Sbjct: 63  FVAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170

[18][TOP]
>UniRef100_B5FZ64 Putative DNA directed RNA polymerase II polypeptide C n=1
           Tax=Taeniopygia guttata RepID=B5FZ64_TAEGU
          Length = 275

 Score =  171 bits (432), Expect = 5e-41
 Identities = 93/171 (54%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  M++SRDC     D  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[19][TOP]
>UniRef100_UPI000001AB34 UPI000001AB34 related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI000001AB34
          Length = 275

 Score =  170 bits (430), Expect = 8e-41
 Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID ++I+ NSSVL+DE
Sbjct: 3   YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPLTS+  +  +++SRDC     D  C  CSVE  L V+C  D T  VTS+D
Sbjct: 63  FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCSECSVELTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFG 170

[20][TOP]
>UniRef100_Q76L19 Homologue of DNA-directed RNA polymerase II subunit n=1
           Tax=Antheraea pernyi RepID=Q76L19_ANTPE
          Length = 275

 Score =  170 bits (430), Expect = 8e-41
 Identities = 91/171 (53%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL DD +KF + DT+ SVAN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3   YANQPSVHITELNDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  +R+SRDC   D    C  CSVEF L VKC  D T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVDKIRYSRDCMCAD---FCSECSVEFTLDVKCTDDQTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SSD  VVPV     D    +  +   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQELKLRAYAKKGFG 170

[21][TOP]
>UniRef100_UPI00003AA556 PREDICTED: hypothetical protein n=1 Tax=Gallus gallus
           RepID=UPI00003AA556
          Length = 275

 Score =  169 bits (429), Expect = 1e-40
 Identities = 92/171 (53%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  M++SRDC     D  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 LISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAYAKKGFG 170

[22][TOP]
>UniRef100_Q6P7Y7 Polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Xenopus
           (Silurana) tropicalis RepID=Q6P7Y7_XENTR
          Length = 275

 Score =  169 bits (429), Expect = 1e-40
 Identities = 91/171 (53%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  +++SRDC     D  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[23][TOP]
>UniRef100_Q4SK90 Chromosome 13 SCAF14566, whole genome shotgun sequence. (Fragment)
           n=1 Tax=Tetraodon nigroviridis RepID=Q4SK90_TETNG
          Length = 275

 Score =  169 bits (429), Expect = 1e-40
 Identities = 89/171 (52%), Positives = 121/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD +VAN++RRV +SEVPT+AID ++I+ NSSVL+DE
Sbjct: 3   YANQPTVKITELTDENVKFVIENTDLAVANSIRRVFMSEVPTIAIDWIQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPLTS+  +  +++SRDC     D  C  CSVE  L V+C  D T  VTS+D
Sbjct: 63  FVAHRVGLIPLTSDDIVDKLQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAYAKKGFG 170

[24][TOP]
>UniRef100_Q6IRR3 MGC81245 protein n=1 Tax=Xenopus laevis RepID=Q6IRR3_XENLA
          Length = 275

 Score =  169 bits (428), Expect = 1e-40
 Identities = 90/171 (52%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V++ EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRLTELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  +++SRDC     D  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRVGLIPLTSDDIVDKLQYSRDCTC---DEFCPECSVEFTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[25][TOP]
>UniRef100_UPI00019253CC PREDICTED: similar to predicted protein n=1 Tax=Hydra
           magnipapillata RepID=UPI00019253CC
          Length = 273

 Score =  169 bits (427), Expect = 2e-40
 Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  PRVKI E  DD +KF L +TD SVAN+LRR+ I+EVPT+AID V+IE N+SVL+DE
Sbjct: 3   YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62

Query: 247 FIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS E+   M +SRDC   +    C+ CSV+F L VKC  ++T  VTS+D
Sbjct: 63  FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S D  V+PV     D  +   ET +   I+IVKLRKGQEL+L A A+KG G
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFG 169

[26][TOP]
>UniRef100_UPI0001925380 PREDICTED: similar to predicted protein n=1 Tax=Hydra
           magnipapillata RepID=UPI0001925380
          Length = 289

 Score =  169 bits (427), Expect = 2e-40
 Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  PRVKI E  DD +KF L +TD SVAN+LRR+ I+EVPT+AID V+IE N+SVL+DE
Sbjct: 3   YASQPRVKILEWTDDNLKFILENTDLSVANSLRRIFIAEVPTIAIDWVQIENNTSVLHDE 62

Query: 247 FIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS E+   M +SRDC   +    C+ CSV+F L VKC  ++T  VTS+D
Sbjct: 63  FIAHRIGLIPLTSDEKVDKMCYSRDCTCSE---FCDECSVKFTLDVKCTGETTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S D  V+PV     D  +   ET +   I+IVKLRKGQEL+L A A+KG G
Sbjct: 120 LISEDPKVIPVTSRIKDDDTGYGETDE---IVIVKLRKGQELKLHAFAKKGFG 169

[27][TOP]
>UniRef100_C1BL52 DNA-directed RNA polymerase II 33 kDa polypeptide n=1 Tax=Osmerus
           mordax RepID=C1BL52_OSMMO
          Length = 275

 Score =  169 bits (427), Expect = 2e-40
 Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD +VAN++RRV +SEV T+AID ++I+ NSSVL+DE
Sbjct: 3   YANQPTVKITELSDENVKFVIENTDLAVANSIRRVFMSEVATIAIDWIQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  M++SRDC     D  C  CSVE  L V+C  D T  VTS+D
Sbjct: 63  FIAHRVGLIPLTSDDIVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  V+PV   + D+   +  +   II+VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQELRLRAYAKKGFG 170

[28][TOP]
>UniRef100_C3Z918 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
           RepID=C3Z918_BRAFL
          Length = 275

 Score =  168 bits (426), Expect = 2e-40
 Identities = 89/169 (52%), Positives = 119/169 (70%), Gaps = 1/169 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P+V + EL D+ +KF + DTD S+ANA+RR+ I+EVPT+AID V++E NSSVL+DE
Sbjct: 3   YANQPQVHLTELSDENVKFVIEDTDLSMANAVRRIFIAEVPTLAIDWVQLEANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  M++SRDC   +    C  C++E  L VKC  D T  VT++D
Sbjct: 63  FIAHRVGLIPLTSDDIVDRMQYSRDCTCAE---FCADCAIELTLDVKCTDDQTRHVTTRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
           L SS+  VVPV    A+  +    +   I+IVKLRKGQEL+LRA A+KG
Sbjct: 120 LISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQELKLRAFAKKG 168

[29][TOP]
>UniRef100_C1BV58 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Lepeophtheirus
           salmonis RepID=C1BV58_9MAXI
          Length = 279

 Score =  168 bits (426), Expect = 2e-40
 Identities = 93/170 (54%), Positives = 120/170 (70%), Gaps = 2/170 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P + I EL +D +KF L DTD SVANA+RRVMI+E P +AID V++E NS+VL+DE
Sbjct: 3   YANQPSINITELTEDLVKFTLEDTDLSVANAIRRVMIAETPIMAIDWVQLESNSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLG+IPLTS+ A+  M++SRDC   D    C  C+VEF L VKC  ++T +VTS D
Sbjct: 63  FIAHRLGMIPLTSDDAVDSMQYSRDCTCTD---FCRECAVEFTLDVKCHEETTRNVTSAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVE-TSDGRGIIIVKLRKGQELRLRAIARKG 570
           L SSD  V+PV     +    E  ++   I+IVKLRKGQEL++RA A+KG
Sbjct: 120 LKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRAYAKKG 169

[30][TOP]
>UniRef100_UPI00005EAD58 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
           polypeptide C, 33kDa n=1 Tax=Monodelphis domestica
           RepID=UPI00005EAD58
          Length = 275

 Score =  167 bits (424), Expect = 4e-40
 Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV   + D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[31][TOP]
>UniRef100_Q1HQ43 DNA-directed RNA polymerase II polypeptide n=1 Tax=Bombyx mori
           RepID=Q1HQ43_BOMMO
          Length = 275

 Score =  167 bits (424), Expect = 4e-40
 Identities = 90/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL D+ +KF + DT+ SVAN++RRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVHITELSDENVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  +R+SRDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCTDEQTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SSD  VVPV     D    +  +   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAYAKKGFG 170

[32][TOP]
>UniRef100_C1BXW0 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Esox lucius
           RepID=C1BXW0_ESOLU
          Length = 275

 Score =  167 bits (423), Expect = 5e-40
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE
Sbjct: 3   YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  M++SRDC     D  C  CSVE  L V+C  D T  VTS+D
Sbjct: 63  FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV   + D+   +  +   I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170

[33][TOP]
>UniRef100_B5XBM8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
           RepID=B5XBM8_SALSA
          Length = 275

 Score =  167 bits (423), Expect = 5e-40
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE
Sbjct: 3   YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  M++SRDC     D  C  CSVE  L V+C  D T  VTS+D
Sbjct: 63  FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDVRCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV   + D+   +  +   I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170

[34][TOP]
>UniRef100_B7QL55 RNA polymerase II, subunit POLR2C/RPB3, putative n=1 Tax=Ixodes
           scapularis RepID=B7QL55_IXOSC
          Length = 274

 Score =  167 bits (423), Expect = 5e-40
 Identities = 94/171 (54%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL D+ +KF + DTD SVAN+LRRV I+EV T+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVHISELTDENVKFFVEDTDLSVANSLRRVFIAEVATLAIDWVQLEANSTVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  M++SRDC   D    C  CSVEF + VKC+ + T  VT+ D
Sbjct: 63  FIAHRLGLIPLTSDEIVDKMQYSRDCTCAD---FCTECSVEFTIDVKCLDEQTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SSD  VVPV     D ++ E  +   I+IVKLRKGQE++ RA A+KG G
Sbjct: 120 LKSSDPRVVPVTSRHKDDTN-EYGETDDILIVKLRKGQEVKARAYAKKGFG 169

[35][TOP]
>UniRef100_C4WTK3 ACYPI001769 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WTK3_ACYPI
          Length = 273

 Score =  167 bits (422), Expect = 7e-40
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL  D +KF++ DTD SVAN+LRRV I+E PT+AID V+++ NS+VL+DE
Sbjct: 3   YANQPSVHISELTTDSIKFQIEDTDLSVANSLRRVFIAETPTLAIDWVQLDCNSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIA R+GLIPLTS+  +  +++SRDC   D    C  CSVEF+L VKC  + T  VT+ D
Sbjct: 63  FIASRIGLIPLTSDEIVDRLQYSRDCTCSD---FCHDCSVEFNLHVKCSEEMTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S++  VVPV     DS   E  +   I+I+KLRKGQEL++RA A+KG G
Sbjct: 120 LVSNNPRVVPVTSRNQDSDINEYGEKDDILIIKLRKGQELKIRAFAKKGFG 170

[36][TOP]
>UniRef100_UPI000186DA34 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186DA34
          Length = 275

 Score =  166 bits (421), Expect = 9e-40
 Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I +L D+ +KF++ DT+ SVAN++RRV I+E PT+AID V++E NS+VL DE
Sbjct: 3   YANQPSVHITDLTDENVKFQIEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLADE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FI+HR+GLIPLTS+  +  ++++RDC   D    C  CSVEF L VKC  D T  VT+ D
Sbjct: 63  FISHRVGLIPLTSDEVVDRIQYTRDCTCLD---FCPECSVEFTLDVKCTDDHTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SSD  V+PV     +  + E  +   I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQELKLRAYAKKGFG 170

[37][TOP]
>UniRef100_UPI0000D5785C PREDICTED: similar to DNA-directed RNA polymerase II subunit n=1
           Tax=Tribolium castaneum RepID=UPI0000D5785C
          Length = 274

 Score =  166 bits (421), Expect = 9e-40
 Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I +L DD +KF + DTD SVAN++RRV+I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVHITDLTDDNVKFYIEDTDLSVANSIRRVLIAETPTLAIDWVKLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  +++ RDC   D    C  CSVEF L VKC  D T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVQRLQYPRDCICTD---FCHECSVEFTLDVKCTDDHTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SSD  V+P      D  S E  D   I+I+KLRKGQEL+++A A+KG G
Sbjct: 120 LKSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQELKVKAYAKKGFG 170

[38][TOP]
>UniRef100_A7SI64 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SI64_NEMVE
          Length = 274

 Score =  166 bits (421), Expect = 9e-40
 Identities = 92/169 (54%), Positives = 116/169 (68%), Gaps = 1/169 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF +  T  S+AN LRR+ I+E PT+AID V+IE N+SVL+DE
Sbjct: 3   YANQPSVKILELTDENVKFIIEKTGMSMANGLRRIFIAETPTIAIDWVQIENNTSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGL+PLTS+  +  M FSRDC     D  C+ CS+EF L VKC  DST  VT++D
Sbjct: 63  FIAHRLGLVPLTSDEVVDRMTFSRDCTC---DEFCDDCSIEFTLDVKCTDDSTRHVTTQD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
           L S++   VPV     +  S E  +   I+IVKLRKGQEL+LRA A+KG
Sbjct: 120 LISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQELKLRAFAKKG 168

[39][TOP]
>UniRef100_Q3T0Q3 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Bos taurus
           RepID=RPB3_BOVIN
          Length = 275

 Score =  166 bits (421), Expect = 9e-40
 Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[40][TOP]
>UniRef100_B5X5T8 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Salmo salar
           RepID=B5X5T8_SALSA
          Length = 275

 Score =  166 bits (419), Expect = 2e-39
 Identities = 89/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P VKI EL D+ +KF + +TD SVAN++RRV +SEV T+AID ++I+ NSSV++DE
Sbjct: 3   YANQPIVKITELTDENVKFVIENTDLSVANSIRRVFMSEVATIAIDWIQIDANSSVIHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIPLTS+  +  M++SRDC     D  C  CSVE  L  +C  D T  VTS+D
Sbjct: 63  FIAHRVGLIPLTSDDVVDKMQYSRDCTC---DDFCPECSVELTLDARCTEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV   + D+   +  +   I++VKLRKGQELRLRA A+KG G
Sbjct: 120 LLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAYAKKGFG 170

[41][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
           discoideum RepID=RPB3_DICDI
          Length = 302

 Score =  166 bits (419), Expect = 2e-39
 Identities = 91/168 (54%), Positives = 115/168 (68%)
 Frame = +1

Query: 73  RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
           R P ++I E+K+D + F L +TD SVANALRRVMI+EVPT+ IDLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
           AHRLGLIPL S+      ++RDC   D   +C+ CSVE  L VKC  +   DVTS DL S
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126

Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            +  V+PV      S+S +      I IVKLR+GQE++LRAIA+KG+G
Sbjct: 127 QNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVG 169

[42][TOP]
>UniRef100_UPI0000DC0B4D polymerase II polypeptide C n=1 Tax=Rattus norvegicus
           RepID=UPI0000DC0B4D
          Length = 330

 Score =  165 bits (417), Expect = 3e-39
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[43][TOP]
>UniRef100_UPI00016D3816 polymerase (RNA) II (DNA directed) polypeptide C n=1 Tax=Mus
           musculus RepID=UPI00016D3816
          Length = 302

 Score =  165 bits (417), Expect = 3e-39
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[44][TOP]
>UniRef100_Q9DB22 Putative uncharacterized protein n=1 Tax=Mus musculus
           RepID=Q9DB22_MOUSE
          Length = 275

 Score =  165 bits (417), Expect = 3e-39
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[45][TOP]
>UniRef100_Q99M46 Polymerase (RNA) II (DNA directed) polypeptide C n=2 Tax=Murinae
           RepID=Q99M46_MOUSE
          Length = 275

 Score =  165 bits (417), Expect = 3e-39
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[46][TOP]
>UniRef100_Q3UUX3 Putative uncharacterized protein n=1 Tax=Mus musculus
           RepID=Q3UUX3_MOUSE
          Length = 332

 Score =  165 bits (417), Expect = 3e-39
 Identities = 90/171 (52%), Positives = 119/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[47][TOP]
>UniRef100_UPI00015B59AE PREDICTED: similar to DNA-directed RNA polymerase II polypeptide
           n=1 Tax=Nasonia vitripennis RepID=UPI00015B59AE
          Length = 276

 Score =  164 bits (415), Expect = 5e-39
 Identities = 87/171 (50%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL ++ +KF++ DT+ SVAN++RRV I+E PT+AID V+IE NS+VL+DE
Sbjct: 3   YANQPTVHISELTEENIKFQVEDTELSVANSMRRVFIAETPTMAIDWVQIEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+G+IPL S+  +  ++++RDC   D    C  C VEF L VKC  ++T  VT+ D
Sbjct: 63  FLAHRIGMIPLISDEVVDRIQYTRDCQCMD---FCPECCVEFTLDVKCSDETTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  VVPV     D  + E  +   I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQELKLRAYAKKGFG 170

[48][TOP]
>UniRef100_UPI0000D9F160 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
           isoform 1 n=1 Tax=Macaca mulatta RepID=UPI0000D9F160
          Length = 257

 Score =  164 bits (415), Expect = 5e-39
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[49][TOP]
>UniRef100_B7Z6D1 cDNA FLJ57430, highly similar to DNA-directed RNA polymerase II 33
           kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B7Z6D1_HUMAN
          Length = 424

 Score =  164 bits (415), Expect = 5e-39
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[50][TOP]
>UniRef100_P19387 DNA-directed RNA polymerase II subunit RPB3 n=2 Tax=Homo sapiens
           RepID=RPB3_HUMAN
          Length = 275

 Score =  164 bits (415), Expect = 5e-39
 Identities = 90/171 (52%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[51][TOP]
>UniRef100_UPI00006A469F PREDICTED: similar to polymerase (RNA) II (DNA directed)
           polypeptide C isoform 2 n=1 Tax=Ciona intestinalis
           RepID=UPI00006A469F
          Length = 277

 Score =  163 bits (412), Expect = 1e-38
 Identities = 86/171 (50%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           +A  P V I EL +D +KF + DTD S AN++RRV I+EVPT+AID ++IE NSSVLNDE
Sbjct: 3   FANQPTVSITELTEDNVKFVVEDTDLSTANSVRRVFIAEVPTLAIDWIQIEENSSVLNDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F++HR+GLIPLTS+  +  +++SRDC     D  C+ CSVEF+L VKC  + T  VT++D
Sbjct: 63  FLSHRIGLIPLTSDDVVDKIQYSRDCMC---DDFCQDCSVEFYLDVKCTGEGTRQVTTRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S +  VVP+   +   SS    +   I+I KLRKGQ L+ +A A+KG G
Sbjct: 120 LISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAFAKKGFG 170

[52][TOP]
>UniRef100_Q4R533 Brain cDNA, clone: QccE-21516, similar to human polymerase (RNA) II
           (DNA directed) polypeptide C, 33kDa(POLR2C), transcript
           variant gamma, n=1 Tax=Macaca fascicularis
           RepID=Q4R533_MACFA
          Length = 251

 Score =  162 bits (410), Expect = 2e-38
 Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L  +   V+PV     D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 120 LIPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[53][TOP]
>UniRef100_Q16XU4 DNA-directed RNA polymerase II subunit n=1 Tax=Aedes aegypti
           RepID=Q16XU4_AEDAE
          Length = 275

 Score =  162 bits (409), Expect = 2e-38
 Identities = 91/172 (52%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL D+ +KF + DTD SV N+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3   YANQPSVTITELTDENVKFVVEDTDLSVTNSLRRVFIAETPTLAIDWVQLESNTTVLADE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  M++SRDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRVGLIPLISDEVVERMQYSRDCTCLD---FCTECSVEFTLDVKCNDEHTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
           L SSD  V+PV     D    E  +G   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRAYAKKGFG 171

[54][TOP]
>UniRef100_Q7Q2H6 AGAP010321-PA n=1 Tax=Anopheles gambiae RepID=Q7Q2H6_ANOGA
          Length = 273

 Score =  161 bits (407), Expect = 4e-38
 Identities = 90/172 (52%), Positives = 116/172 (67%), Gaps = 2/172 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I EL D+ +KF + DT+ SVAN+LRRV I+E PT+AID V++E N++VL DE
Sbjct: 3   YANQPSVTISELTDENVKFIVEDTELSVANSLRRVFIAETPTLAIDWVQLESNTTVLADE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  M++SRDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRVGLIPLISDEVVDRMQYSRDCPCLD---FCNECSVEFTLDVKCNEEHTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
           L SSD  V+PV     D    E  +G   I+I+KLRKGQEL+L+A A+KG G
Sbjct: 120 LKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKAYAKKGFG 171

[55][TOP]
>UniRef100_UPI000051A16D PREDICTED: similar to RNA polymerase II 33kD subunit CG7885-PA,
           isoform A n=1 Tax=Apis mellifera RepID=UPI000051A16D
          Length = 276

 Score =  160 bits (406), Expect = 5e-38
 Identities = 84/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I +L ++ +KF++ DT+ SVAN++RRV I+E PT+AID +++E NS+VL+DE
Sbjct: 3   YANQPSVHISDLTEENVKFQVEDTELSVANSMRRVFIAETPTMAIDWIQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+G+IPL S+  +  ++++RDC   D    C  CSVEF L VKC  D T  VT+ D
Sbjct: 63  FLAHRIGMIPLISDDVVDRIQYTRDCQCMD---FCPECSVEFTLDVKCTEDQTRHVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             SSD  V+PV     +  + E  +   I+IVKLRKGQEL+LRA A+KG G
Sbjct: 120 FKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAYAKKGFG 170

[56][TOP]
>UniRef100_Q29K78 GA20659 n=2 Tax=pseudoobscura subgroup RepID=Q29K78_DROPS
          Length = 275

 Score =  160 bits (404), Expect = 9e-38
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPNVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L +S+  V+PV   +    D+   E+SD   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKTSNPKVLPVTSRNQGEEDNEYGESSD--EILIIKLRKGQELKLRAYAKKGFG 171

[57][TOP]
>UniRef100_O97183 RNA polymerase II 33kD subunit, isoform A n=1 Tax=Drosophila
           melanogaster RepID=O97183_DROME
          Length = 275

 Score =  159 bits (403), Expect = 1e-37
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V+PV   +    D+   E++D   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171

[58][TOP]
>UniRef100_B4Q573 GD23930 n=1 Tax=Drosophila simulans RepID=B4Q573_DROSI
          Length = 275

 Score =  159 bits (403), Expect = 1e-37
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V+PV   +    D+   E++D   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171

[59][TOP]
>UniRef100_B4P3R0 GE18688 n=1 Tax=Drosophila yakuba RepID=B4P3R0_DROYA
          Length = 275

 Score =  159 bits (403), Expect = 1e-37
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V+PV   +    D+   E++D   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171

[60][TOP]
>UniRef100_B3RV95 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3RV95_TRIAD
          Length = 274

 Score =  159 bits (403), Expect = 1e-37
 Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  PRV I +L ++ +KF L +TD SVAN+LRR+ I+ VPT+AID V+   N+SVL+DE
Sbjct: 3   YASQPRVTIPDLTNENVKFILENTDLSVANSLRRIFIANVPTLAIDWVQFVNNTSVLSDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLT +  +  +++SRDC+  +    C  CSVEF L V+C  D T  VT++D
Sbjct: 63  FIAHRLGLIPLTCDEVIDRLQYSRDCNCVE---HCPECSVEFTLDVRCNDDQTRHVTTRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SSD  VVPV     +  +V       I+I KLR+GQE++++A A+KG+G
Sbjct: 120 LISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAYAKKGLG 170

[61][TOP]
>UniRef100_B4JCX9 GH11119 n=3 Tax=Drosophila RepID=B4JCX9_DROGR
          Length = 275

 Score =  159 bits (402), Expect = 1e-37
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V+PV   +    D+   E++D   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESTD--EILIIKLRKGQELKLRAYAKKGFG 171

[62][TOP]
>UniRef100_B4HXA7 GM15286 n=1 Tax=Drosophila sechellia RepID=B4HXA7_DROSE
          Length = 275

 Score =  159 bits (402), Expect = 1e-37
 Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCSEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPVDF---SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V+PV        D+   E++D   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRHQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171

[63][TOP]
>UniRef100_B4MVQ9 GK15011 n=1 Tax=Drosophila willistoni RepID=B4MVQ9_DROWI
          Length = 275

 Score =  159 bits (401), Expect = 2e-37
 Identities = 91/174 (52%), Positives = 121/174 (69%), Gaps = 4/174 (2%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFILEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           F+AHR+GLIPL S+  +  ++++RDC   D    C  CSVEF L VKC  + T  VT+ D
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRDCICLD---FCPECSVEFTLDVKCNEEQTRHVTTAD 119

Query: 424 LYSSDHTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V+PV   +    D+   E++D   I+I+KLRKGQEL+LRA A+KG G
Sbjct: 120 LKSSNAKVLPVTSRNQGEEDNEYGESND--EILIIKLRKGQELKLRAYAKKGFG 171

[64][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
           Tax=Brugia malayi RepID=A8PAX3_BRUMA
          Length = 275

 Score =  158 bits (400), Expect = 3e-37
 Identities = 85/171 (49%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V I  L D+ ++F L DTD SVAN+LRR+ ++EVPT+AID V+IE NSSVL+DE
Sbjct: 3   YANQPHVAITALNDEIVRFVLEDTDLSVANSLRRIFMAEVPTMAIDWVQIESNSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  M+FSRDC   +    C++C+VE  LRV+C  +    VT+ D
Sbjct: 63  FIAHRLGLIPLTSDSVVDQMQFSRDCQCTE---FCQFCAVEMRLRVRCDDEGIRAVTTAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L +S+  V P       + + E +    I+IVKLRKGQ++ ++ IA+KG G
Sbjct: 120 LETSNPDVAPACGVHIRNRNAEENASDDILIVKLRKGQDIDIKCIAKKGFG 170

[65][TOP]
>UniRef100_P97760 DNA-directed RNA polymerase II subunit RPB3 n=1 Tax=Mus musculus
           RepID=RPB3_MOUSE
          Length = 275

 Score =  158 bits (400), Expect = 3e-37
 Identities = 88/171 (51%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL ++ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L S+   V+PV     D+   +  +   I+IVKLRKGQELRLRA  +K  G
Sbjct: 120 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSG 170

[66][TOP]
>UniRef100_Q2GNN7 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
           RepID=Q2GNN7_CHAGB
          Length = 338

 Score =  152 bits (385), Expect = 1e-35
 Identities = 83/165 (50%), Positives = 108/165 (65%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P VKI +     +KFEL + D + AN+LRRVM+ E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16  PVVKISQADPIRVKFELSNADIAFANSLRRVMLGEIPTIAIDLVEIEENSSVLADEFIAH 75

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL ++   G+ F+RDCD    DG CE+CSV   L  KC  D  + V ++DL  + 
Sbjct: 76  RLGLIPLNADGVEGLLFARDCDC---DGCCEHCSVRLTLHAKCTGDENMHVFARDLVPTG 132

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             +  V      +  V  S+G G +I+KLR GQE++L  IA+KGI
Sbjct: 133 ERINQV----LGTPVVSDSEGLGALILKLRPGQEIKLECIAKKGI 173

[67][TOP]
>UniRef100_Q9P5U3 Probable DNA-directed RNA polymerase II chain RPB3 n=1
           Tax=Neurospora crassa RepID=Q9P5U3_NEUCR
          Length = 337

 Score =  152 bits (383), Expect = 2e-35
 Identities = 83/165 (50%), Positives = 110/165 (66%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P VKI +  +  +KFEL +T+ S AN+LRRVM++E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16  PVVKISQADNTRVKFELSNTELSFANSLRRVMLAEIPTIAIDLVEIEANSSVLADEFIAH 75

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL +E    + +SRDCD    D  CE+CSV  +L  KC  D  + V ++DL    
Sbjct: 76  RLGLIPLNAEGIEQLLYSRDCDC---DEYCEHCSVTLNLHAKCTGDDIMQVCARDLVPVG 132

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V  V      S  +   +G+G +I+KLR GQE++L+ IA+KGI
Sbjct: 133 DRVNQV----LGSPIINDPEGQGPLILKLRHGQEIKLQCIAKKGI 173

[68][TOP]
>UniRef100_C4QNG7 DNA-directed rna polymerase II subunit, putative n=1
           Tax=Schistosoma mansoni RepID=C4QNG7_SCHMA
          Length = 266

 Score =  150 bits (379), Expect = 7e-35
 Identities = 87/171 (50%), Positives = 112/171 (65%), Gaps = 1/171 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V +    ++ +KF L +TD SVANA+RRV I+EVPT+AID V+IE N+++LNDE
Sbjct: 3   YANQPIVTLTSFNNENIKFVLEETDLSVANAIRRVCIAEVPTLAIDWVQIEDNNTMLNDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIA R+GLIPLT +  +  M + R+C   +    CE CSVE  L V C TD+   VT  D
Sbjct: 63  FIAQRVGLIPLTCDNVVDKMTYFRECPCRE---FCEQCSVELTLDVCCTTDAPRHVTGAD 119

Query: 424 LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L SS+  V PV    AD SS    +   I+IVK+RKGQ L+LRAIA+KG G
Sbjct: 120 LISSNRDVQPVPSRDADESSYVGQE--SILIVKMRKGQRLKLRAIAKKGFG 168

[69][TOP]
>UniRef100_Q93338 Protein C36B1.3, partially confirmed by transcript evidence n=1
           Tax=Caenorhabditis elegans RepID=Q93338_CAEEL
          Length = 282

 Score =  150 bits (378), Expect = 9e-35
 Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 7/177 (3%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE
Sbjct: 3   YANQPNIEVTELTNDIIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62

Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIP  S+     M+++RDC+  +    C+ CS+ F L++KC  ++TL VT++ 
Sbjct: 63  FIAHRMGLIPFISDYHVEKMQYTRDCECAE---FCDECSIPFILQMKCKDEATLAVTTEH 119

Query: 424 L---YSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L   ++ D TV P    A     S+  E  +   I+IVKLRKGQEL L+A  +KG G
Sbjct: 120 LMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQELNLKAYVKKGFG 176

[70][TOP]
>UniRef100_A3GF98 45 kDa subunit of RNA polymerase II n=1 Tax=Pichia stipitis
           RepID=A3GF98_PICST
          Length = 315

 Score =  147 bits (370), Expect = 8e-34
 Identities = 83/165 (50%), Positives = 106/165 (64%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V IRE + D++ F LRD D ++AN++RRVM++EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9   PSVTIRESERDHVNFILRDVDMAMANSVRRVMLAEVPTLAIDLVEIDVNTSVLADEFLSH 68

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGL+PL SE    + +SRDC     D  C  CSV   L  KC TDST++V + DL    
Sbjct: 69  RLGLVPLVSEGIENLTYSRDCTC---DNYCPKCSVRLELTAKCDTDSTMNVYATDLAKFH 125

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           +       S      V     RG +I KLRK QELRL  IA+KGI
Sbjct: 126 NG------SRLGDPVVRDVQKRGPLICKLRKHQELRLTCIAKKGI 164

[71][TOP]
>UniRef100_UPI0000123F31 Hypothetical protein CBG12350 n=1 Tax=Caenorhabditis briggsae AF16
           RepID=UPI0000123F31
          Length = 399

 Score =  146 bits (369), Expect = 1e-33
 Identities = 84/176 (47%), Positives = 114/176 (64%), Gaps = 6/176 (3%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE
Sbjct: 3   YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62

Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIP  S+     M+++R+C+  +    C+ CS+ F L+ KC  ++TL VT+ D
Sbjct: 63  FIAHRMGLIPFLSDYHVEKMQYTRECECAE---FCDECSIPFILQTKCTDEATLAVTTAD 119

Query: 424 L--YSSDHTVVPVDFSAADSSSV---ETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L     + TV P    A         E      I+IVKLRKGQEL L+A A+KG G
Sbjct: 120 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFG 175

[72][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
           RCC299 RepID=C1EBY2_9CHLO
          Length = 331

 Score =  146 bits (369), Expect = 1e-33
 Identities = 90/193 (46%), Positives = 116/193 (60%), Gaps = 19/193 (9%)
 Frame = +1

Query: 55  EGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSV 234
           +G    R P + ++E+ +D +KF L  TD S+ANALRRV+I+EVPT+AIDLVE+  NSS 
Sbjct: 5   DGDPRQRRPNIVVQEMTEDTIKFVLTGTDTSIANALRRVIIAEVPTIAIDLVEVIENSSC 64

Query: 235 LNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVT 414
           L DEFIAHRLGLIPL S +A  M F  D     GD +     V   LRVKC++D T DVT
Sbjct: 65  LCDEFIAHRLGLIPLVSHKAADMEFPYD---YAGDDE-TVTDVPIELRVKCVSDQTEDVT 120

Query: 415 SKDL-----YSSDHTVVPVDF--------------SAADSSSVETSDGRGIIIVKLRKGQ 537
           S DL     Y+   TV PV +              + AD S  +  D   I+I+KLRK Q
Sbjct: 121 SNDLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQAD-GDKHPILILKLRKNQ 179

Query: 538 ELRLRAIARKGIG 576
           E+ +R +ARKG+G
Sbjct: 180 EINMRCVARKGVG 192

[73][TOP]
>UniRef100_C4XY52 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
           42720 RepID=C4XY52_CLAL4
          Length = 307

 Score =  146 bits (368), Expect = 1e-33
 Identities = 87/174 (50%), Positives = 108/174 (62%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           ME  S    PRV IR+ + D++ F LR  D SVAN+LRR M+SEVPT+AIDLVEI+VN+S
Sbjct: 1   MEVDSAESGPRVTIRQTERDHVDFILRGVDLSVANSLRRTMLSEVPTLAIDLVEIDVNTS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VL DE ++HRLGLIPL SE    + +SRDC     D  C  CSV+  L  KC +DST++V
Sbjct: 61  VLADELLSHRLGLIPLNSEGIENLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMNV 117

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
            S DL    +       S      +     RG +I KLRK QELRL  IA+KGI
Sbjct: 118 YSSDLAKFHNG------SKLGDPVIRDPAHRGPLICKLRKHQELRLTCIAKKGI 165

[74][TOP]
>UniRef100_Q6BUW0 DEHA2C07546p n=1 Tax=Debaryomyces hansenii RepID=Q6BUW0_DEBHA
          Length = 311

 Score =  144 bits (363), Expect = 5e-33
 Identities = 83/165 (50%), Positives = 106/165 (64%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           PRV IR    +++ F L+D D ++AN++RR M++EVPT+AIDLVEIEVN+SVL DEFI+H
Sbjct: 11  PRVTIRHTDKEHVDFILKDVDLAMANSMRRTMLAEVPTLAIDLVEIEVNTSVLADEFISH 70

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL SE    + +SRDC     D  C  CSV+  L  KC TDST+ V S DL    
Sbjct: 71  RLGLIPLNSEGIDNLSYSRDCTC---DQYCANCSVKLELTAKCDTDSTMSVYSSDLAKFH 127

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           +     D  A D+        +G +I KLRK QELR+  IA+KGI
Sbjct: 128 NGSKLGDPVARDNHR------KGPLICKLRKHQELRITCIAKKGI 166

[75][TOP]
>UniRef100_A7EJ53 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
           1980 UF-70 RepID=A7EJ53_SCLS1
          Length = 335

 Score =  144 bits (363), Expect = 5e-33
 Identities = 83/166 (50%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKI E    ++ FEL + D S AN+LRR ++SEVPT+AID V+IE N+SVL DEFIAH
Sbjct: 15  PQVKITEAGSHHVDFELSNVDLSFANSLRRTILSEVPTIAIDRVQIEANTSVLADEFIAH 74

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S+    + ++RDCD    DG CE CSV   L  +C  D  + V ++DL    
Sbjct: 75  RLGLIPLNSKNCDDVIYTRDCDC---DGNCELCSVTLTLHARCTGDEIMKVYARDL---- 127

Query: 439 HTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
             V P   +    + V T  DG G +I KLRKGQELR++ IA KGI
Sbjct: 128 -VVDPQRANKWVGNPVITDPDGLGPVIAKLRKGQELRMKCIALKGI 172

[76][TOP]
>UniRef100_UPI0000E48A01 PREDICTED: hypothetical protein isoform 1, partial n=1
           Tax=Strongylocentrotus purpuratus RepID=UPI0000E48A01
          Length = 246

 Score =  144 bits (362), Expect = 6e-33
 Identities = 81/144 (56%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
 Frame = +1

Query: 148 VANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCD 324
           VAN++RR +++EVPT+AID VEI+ NSSVL+DEFI+HR+GLIPLTS+  +  + F+RDC 
Sbjct: 1   VANSIRRTILAEVPTIAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCG 60

Query: 325 ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGR 504
               +  C  CSVE  L VKC  D T  VTS+DL SS+  VVPV     +SS     D  
Sbjct: 61  C---EEFCSDCSVELSLDVKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQESSDYGEVD-- 115

Query: 505 GIIIVKLRKGQELRLRAIARKGIG 576
            I+IVKLRKGQELRLRA A+KG G
Sbjct: 116 DILIVKLRKGQELRLRAYAKKGFG 139

[77][TOP]
>UniRef100_Q5A462 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
           albicans RepID=Q5A462_CANAL
          Length = 318

 Score =  143 bits (361), Expect = 8e-33
 Identities = 79/165 (47%), Positives = 104/165 (63%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V IRE + D++ F L++ D +VAN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9   PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL SE    + +SRDC     D  C  CSV   L   C T+ST++V + DL    
Sbjct: 69  RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLIANCATESTMNVYASDLQKMS 125

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           H     + S      +     RG +I KLRK QEL L  IA+KGI
Sbjct: 126 H-----NGSKLGDPVIRDPQARGPLICKLRKHQELSLTCIAKKGI 165

[78][TOP]
>UniRef100_B9WGL5 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Candida
           dubliniensis CD36 RepID=B9WGL5_CANDC
          Length = 313

 Score =  143 bits (361), Expect = 8e-33
 Identities = 79/165 (47%), Positives = 104/165 (63%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V IRE + D++ F L++ D +VAN++RR +I+EVPT+AIDLVEI+VN+SVL DEF++H
Sbjct: 9   PSVTIREAEKDHVNFILKNVDLAVANSMRRTIIAEVPTLAIDLVEIDVNTSVLADEFLSH 68

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL SE    + +SRDC     D  C  CSV   L   C T+ST++V + DL    
Sbjct: 69  RLGLIPLVSEGIDNLTYSRDCTC---DNYCSKCSVTLQLVANCATESTMNVYASDLQKMS 125

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           H     + S      +     RG +I KLRK QEL L  IA+KGI
Sbjct: 126 H-----NGSKLGDPVIRDPQARGPLICKLRKHQELSLTCIAKKGI 165

[79][TOP]
>UniRef100_A6S2E5 RNA polymerase II subunit 3 n=1 Tax=Botryotinia fuckeliana B05.10
           RepID=A6S2E5_BOTFB
          Length = 336

 Score =  142 bits (359), Expect = 1e-32
 Identities = 82/166 (49%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKI E    ++ FEL + D S AN+LRR ++SEVPT+AID V+IE N+SVL DEFIAH
Sbjct: 15  PQVKITEAGSHHVDFELSNVDLSFANSLRRTVLSEVPTIAIDRVQIEANTSVLADEFIAH 74

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S+    + ++RDCD    +G CE CSV   L  +C  D  + V ++DL    
Sbjct: 75  RLGLIPLNSKNCDDVIYTRDCDC---EGNCELCSVTLTLHARCTGDEIMKVYARDL---- 127

Query: 439 HTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
             V P   +    + V T  DG G +I KLRKGQELR++ IA KGI
Sbjct: 128 -VVDPQRANKWVGNPVITDPDGLGPVIAKLRKGQELRMKCIALKGI 172

[80][TOP]
>UniRef100_A8XFM5 C. briggsae CBR-RPB-3 protein n=1 Tax=Caenorhabditis briggsae
           RepID=A8XFM5_CAEBR
          Length = 280

 Score =  142 bits (357), Expect = 2e-32
 Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 6/176 (3%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P +++ EL +D +KF L DTD SVAN+LRRV ++EVPT+AID V+IE N+SVL+DE
Sbjct: 3   YANQPNIEVTELTNDLIKFVLWDTDLSVANSLRRVFMAEVPTIAIDWVQIETNTSVLHDE 62

Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHR+GLIP  S+     M+++R    C+    C+ CS+ F L+ KC  ++TL VT+ D
Sbjct: 63  FIAHRMGLIPFLSDYHVEKMQYTR----CECAEFCDECSIPFILQTKCTDEATLAVTTAD 118

Query: 424 L--YSSDHTVVPVDFSAADSSSV---ETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           L     + TV P    A         E      I+IVKLRKGQEL L+A A+KG G
Sbjct: 119 LRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQELNLKAYAKKGFG 174

[81][TOP]
>UniRef100_B8PBS2 Predicted protein (Fragment) n=1 Tax=Postia placenta Mad-698-R
           RepID=B8PBS2_POSPM
          Length = 265

 Score =  142 bits (357), Expect = 2e-32
 Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V+IREL+ D++ F + + D ++AN+LRRVM++++PTVAID+VEIE N++VL DEFIAH
Sbjct: 4   PIVRIRELQKDHVNFVVENVDLALANSLRRVMMADIPTVAIDMVEIETNTTVLPDEFIAH 63

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLG+IPL S     GMR++RDC        C++C+VE  L V C     +DVTS  L  S
Sbjct: 64  RLGMIPLVSSNCDEGMRYTRDCTCL---SWCQFCAVELTLHVACHDGVAMDVTSMHLDVS 120

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           D      +         + S    ++I K+RKGQELRLR IA+KG+
Sbjct: 121 DELAKRPENFGHPVGKFDPSVS-PVLIAKIRKGQELRLRCIAKKGV 165

[82][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
           Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
          Length = 275

 Score =  141 bits (355), Expect = 4e-32
 Identities = 82/171 (47%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
 Frame = +1

Query: 70  ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
           +R P + +R L+ DYM FEL++TD S ANALRR M++EVPT+AIDLVE+E N++VLNDEF
Sbjct: 10  SRKPTISVRTLEPDYMVFELKNTDPSSANALRRAMVAEVPTIAIDLVEMENNTTVLNDEF 69

Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL- 426
           +AHRLGLIPL S  A+  +        +  G  +     F L V C  +  +DVTS DL 
Sbjct: 70  LAHRLGLIPLVSRNAVYWK-----RPFEWSGDNDIIETAFSLDVMCEQEGVMDVTSNDLV 124

Query: 427 -YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
               D  VVPV++ +A          + I+I KLR+GQ L+L A ARKGIG
Sbjct: 125 PLEPDAGVVPVNYHSATE--------KPIVICKLRRGQHLKLVARARKGIG 167

[83][TOP]
>UniRef100_B2B158 Predicted CDS Pa_3_9390 n=1 Tax=Podospora anserina
           RepID=B2B158_PODAN
          Length = 334

 Score =  141 bits (355), Expect = 4e-32
 Identities = 82/168 (48%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P VKI +     +KFEL++ D S AN+LRRVM++E+PT+AIDLVEIE NSSVL DEFIAH
Sbjct: 16  PVVKISQADSVRVKFELQNADISFANSLRRVMLAEIPTIAIDLVEIESNSSVLADEFIAH 75

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL +E    + +SRDCD    +  CE CSV+  L  KC     + V+++DL    
Sbjct: 76  RLGLIPLNAEGVEHLLYSRDCDC---EEYCENCSVKLTLHAKCTGYENMSVSARDL---- 128

Query: 439 HTVVPVDFSAADSSS---VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              VPV      S     +   DG G +I+KLR  QE++L  IA+KGI
Sbjct: 129 ---VPVGERINQSLGTPVINDKDGTGPLILKLRPEQEIKLECIAKKGI 173

[84][TOP]
>UniRef100_A5DQ44 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
           RepID=A5DQ44_PICGU
          Length = 305

 Score =  141 bits (355), Expect = 4e-32
 Identities = 80/164 (48%), Positives = 105/164 (64%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV IR+ + D++ F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9   RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           LG+IPL SE    + +SRDC     D  C  CSV+  L  KC +DST+ V + DL    +
Sbjct: 69  LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCSVKLELTAKCDSDSTMSVYATDLAKFHN 125

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                  S      V     RG +I KLRK QELRL  IA+KGI
Sbjct: 126 G------SKLGDPVVRDHHQRGPLICKLRKHQELRLTCIAKKGI 163

[85][TOP]
>UniRef100_C7YWI1 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
           RepID=C7YWI1_NECH7
          Length = 335

 Score =  140 bits (353), Expect = 7e-32
 Identities = 79/165 (47%), Positives = 104/165 (63%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKI      ++ FEL  T+ + ANALRRV+ +EVPT+AIDLVEIE+NSSVL DEFIAH
Sbjct: 15  PQVKISAADHTHVDFELSKTNLAFANALRRVIQAEVPTIAIDLVEIEINSSVLADEFIAH 74

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S+    +  SRDCD    +  CE CSV  +L  KC +D  + V ++DL    
Sbjct: 75  RLGLIPLDSKGVGELNNSRDCDC---EQYCEQCSVTLNLHAKCTSDEIMKVYARDLVVDG 131

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                   ++  S  +   +G G +I KLRK QEL++  IA+KGI
Sbjct: 132 RHA-----NSVGSPVITDPEGYGCLIAKLRKDQELKITCIAKKGI 171

[86][TOP]
>UniRef100_UPI000023DAEE hypothetical protein FG01447.1 n=1 Tax=Gibberella zeae PH-1
           RepID=UPI000023DAEE
          Length = 337

 Score =  139 bits (350), Expect = 2e-31
 Identities = 80/165 (48%), Positives = 104/165 (63%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKI      ++ FEL  T+ S ANA+RRV+ +EVPT+AIDLVEIE NSSVL DEFIAH
Sbjct: 15  PQVKISAADHMHVDFELSKTNLSFANAVRRVIQAEVPTIAIDLVEIETNSSVLADEFIAH 74

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S+    + +SRDCD    +  CE CSV   L  KC +D  + V ++DL    
Sbjct: 75  RLGLIPLDSKGVAELNYSRDCDC---EQYCEQCSVTLTLHAKCTSDEIMKVYARDL---- 127

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V     ++  S  +   +G G +I KLRK QEL++  IA+KGI
Sbjct: 128 -VVDGRHGNSVGSPMIMDPEGYGCLIAKLRKHQELKISCIAKKGI 171

[87][TOP]
>UniRef100_C5MDV1 DNA-directed RNA polymerase II 45 kDa polypeptide n=1 Tax=Candida
           tropicalis MYA-3404 RepID=C5MDV1_CANTT
          Length = 327

 Score =  139 bits (350), Expect = 2e-31
 Identities = 79/165 (47%), Positives = 101/165 (61%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V IR  + D++ F LR+ D SVAN++RR M++EVPT++IDLVEIE N+SVL DEF++H
Sbjct: 9   PGVTIRTAEKDHVDFILRNVDLSVANSIRRTMLAEVPTLSIDLVEIEKNTSVLADEFLSH 68

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL SE    + +SRDC     D  C  CSV   L   C  ++T++V + DL  + 
Sbjct: 69  RLGLIPLVSEGIKDLTYSRDCTC---DNYCTKCSVTLQLLASCTAETTMNVYASDLLKTT 125

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           HT      S            RG II KLRK QEL L  IA+KGI
Sbjct: 126 HT-----GSKLGDPVFRDPRNRGPIICKLRKDQELALTCIAKKGI 165

[88][TOP]
>UniRef100_A5E4Q9 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
           Tax=Lodderomyces elongisporus RepID=A5E4Q9_LODEL
          Length = 336

 Score =  139 bits (350), Expect = 2e-31
 Identities = 78/165 (47%), Positives = 106/165 (64%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V +R+ + D + F L+  D S+AN+LRR M++EVPT+AIDLVEI+VN+SVL DEF+AH
Sbjct: 7   PSVIMRDAEKDRVSFVLQGVDLSMANSLRRTMLAEVPTLAIDLVEIDVNTSVLADEFLAH 66

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S+    + +SRDC AC  D  C  CSV   L  KC +DST++V + DL    
Sbjct: 67  RLGLIPLDSQGIENLLYSRDC-AC--DNYCSKCSVTLELTAKCDSDSTMNVCASDL---- 119

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              + ++        +     RG +I KLR+ QE+RL  IA+KGI
Sbjct: 120 ---LKLNTELLGKPIIRDPQNRGPLICKLRRHQEIRLTCIAKKGI 161

[89][TOP]
>UniRef100_UPI000151B3AC conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
           6260 RepID=UPI000151B3AC
          Length = 305

 Score =  139 bits (349), Expect = 2e-31
 Identities = 79/164 (48%), Positives = 104/164 (63%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV IR+ + D++ F L+D D S+AN++RR M++EVPT+AIDLVEI+VN+SVL DEF++HR
Sbjct: 9   RVTIRQAERDHVDFILKDVDLSMANSIRRTMLAEVPTLAIDLVEIDVNTSVLADEFLSHR 68

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           LG+IPL SE    + +SRDC     D  C  C V+  L  KC +DST+ V + DL    +
Sbjct: 69  LGMIPLNSEGIDNLSYSRDCTC---DQYCPNCLVKLELTAKCDSDSTMSVYATDLAKFHN 125

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                  S      V     RG +I KLRK QELRL  IA+KGI
Sbjct: 126 G------SKLGDPVVRDHHQRGPLICKLRKHQELRLTCIAKKGI 163

[90][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
           lucimarinus CCE9901 RepID=A4RSP9_OSTLU
          Length = 318

 Score =  137 bits (346), Expect = 5e-31
 Identities = 80/168 (47%), Positives = 104/168 (61%), Gaps = 4/168 (2%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           V +  L+D+ + F+L+  D S+ANALRR+MI++VPTV+IDLVE+  NSSVL DEF+AHRL
Sbjct: 11  VTVARLEDETIIFDLKGVDVSLANALRRLMIADVPTVSIDLVEVIENSSVLCDEFLAHRL 70

Query: 265 GLIPLTSERAMGM----RFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
           GLIPL S +A  +     ++ D D            V   L V+C +D T DVTS DL S
Sbjct: 71  GLIPLDSTKASELVKPYEYTGDDDTA--------TDVHLELNVRCQSDQTRDVTSDDLIS 122

Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            D  V PV F      S ++    GI+I KLRK Q+L L+ IARKG G
Sbjct: 123 HDERVKPVSFGGTGGGSAKSG---GILIAKLRKNQQLSLKCIARKGTG 167

[91][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
           RepID=B7G229_PHATR
          Length = 320

 Score =  137 bits (344), Expect = 8e-31
 Identities = 83/181 (45%), Positives = 109/181 (60%), Gaps = 12/181 (6%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           Y R PRV+I  ++   +KF L ++D SVAN LRR+MI+EVPT+AIDLVE   NS+VLNDE
Sbjct: 3   YQRFPRVEILSIQPQEIKFILSESDTSVANTLRRIMIAEVPTLAIDLVEFHENSTVLNDE 62

Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDA------CDGDGQCEYCSVEFHLRVKCMTD---- 396
           +IAHR+GLIP+  + A  ++ S   DA      C     C  CSVEF L +         
Sbjct: 63  YIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMRCSVEFELDITYKVTGEED 122

Query: 397 --STLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
             + L VTSKDL S++  V P  F + D    + +   G+ IVKL  GQ L+L+AIAR G
Sbjct: 123 VLAPLTVTSKDLVSNNELVQPAHFLSQDEQ--DEAQDEGVAIVKLGPGQRLKLKAIARMG 180

Query: 571 I 573
           I
Sbjct: 181 I 181

[92][TOP]
>UniRef100_B6K2N9 DNA-directed RNA polymerase II subunit RPB3 n=1
           Tax=Schizosaccharomyces japonicus yFS275
           RepID=B6K2N9_SCHJY
          Length = 308

 Score =  136 bits (342), Expect = 1e-30
 Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 7/172 (4%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V I+ +  + ++F L +TD S+AN+LRRV++ E+PTVAIDLVEI VN+SV+ DEF+AH
Sbjct: 5   PNVTIKNIGKNSVEFVLSNTDLSLANSLRRVVLGEIPTVAIDLVEISVNTSVMPDEFLAH 64

Query: 259 RLGLIPLTSER-----AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           RLG+IPL S        +G+ ++R+CD    D  C  CSVE  L  KC  D T++V ++D
Sbjct: 65  RLGMIPLNSNNIDEPPPVGLEYTRNCDC---DQYCNKCSVELSLNAKCTGDGTMEVYARD 121

Query: 424 LYSSDHTVV--PVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           L    ++ +  PV    AD+ S       G +I+KLRK QE+ LR IA+KGI
Sbjct: 122 LVVDSNSTLGQPV---LADARS------HGPLILKLRKEQEVSLRCIAKKGI 164

[93][TOP]
>UniRef100_UPI000194E98D PREDICTED: hypothetical protein, partial n=1 Tax=Taeniopygia
           guttata RepID=UPI000194E98D
          Length = 129

 Score =  135 bits (341), Expect = 2e-30
 Identities = 72/130 (55%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPLTS+  +  M++SRDC     D  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKMQYSRDCTC---DEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVP 453
           L S++  V+P
Sbjct: 120 LISNNPRVIP 129

[94][TOP]
>UniRef100_P16370 DNA-directed RNA polymerase II subunit RPB3 n=6 Tax=Saccharomyces
           cerevisiae RepID=RPB3_YEAST
          Length = 318

 Score =  135 bits (341), Expect = 2e-30
 Identities = 78/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKIRE   D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEFIAH
Sbjct: 6   PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S     + +SRDC   D    C+ CSV   L+    ++ST +V SKDL    
Sbjct: 66  RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDL---- 118

Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V+  +    +     ++  +G G++I KLRKGQEL+L  +A+KGI
Sbjct: 119 --VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGI 163

[95][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MVZ5_9CHLO
          Length = 333

 Score =  135 bits (340), Expect = 2e-30
 Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 18/186 (9%)
 Frame = +1

Query: 73  RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
           R P + ++EL  + ++F L  TD SVANALRRV+I+EVPT+AIDLV++  N+S L DEFI
Sbjct: 10  RSPSIVVQELTHEKIRFALLHTDTSVANALRRVIIAEVPTLAIDLVDVIENTSCLCDEFI 69

Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVK-CMTDSTLDVTSKDLY 429
           AHRLGLIPL SE+A+ M F  D     GD +     V F L    C +  T+DVTS DL 
Sbjct: 70  AHRLGLIPLLSEKAVEMEFPYD---YAGDDE-SVTDVHFELNTGICASAETVDVTSNDLV 125

Query: 430 SSDHTVVPVDF-----------------SAADSSSVETSDGRGIIIVKLRKGQELRLRAI 558
             D  V PV++                  AA     +  D  G++IVKLR+GQ++ +R +
Sbjct: 126 CYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGPDIPGVVIVKLRRGQQINMRCV 185

Query: 559 ARKGIG 576
           ARKG+G
Sbjct: 186 ARKGVG 191

[96][TOP]
>UniRef100_C5DHI5 KLTH0E04598p n=1 Tax=Lachancea thermotolerans CBS 6340
           RepID=C5DHI5_LACTC
          Length = 328

 Score =  135 bits (340), Expect = 2e-30
 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 2/167 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKIRE   D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFI+H
Sbjct: 6   PQVKIREATKDNVDFILSNVDITMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFISH 65

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S     + + RDC   D    C+ CSV   L+    ++ST +V +KDL    
Sbjct: 66  RLGLIPLQSSDINDLIYCRDCYCED---HCDRCSVVLTLQAVGESESTTNVYAKDL---- 118

Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V+  +    +     ++  DG G++I KLRKGQEL+L+ +A+KGI
Sbjct: 119 --VIVSNLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCVAKKGI 163

[97][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
           Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
          Length = 301

 Score =  134 bits (338), Expect = 4e-30
 Identities = 78/169 (46%), Positives = 104/169 (61%), Gaps = 5/169 (2%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           V +  L+D  + F L+  D S+ANALRRVMI++VPT+AIDLVE+  NSSVL DEF+AHRL
Sbjct: 11  VSVTRLEDQSITFSLKGVDVSLANALRRVMIADVPTLAIDLVEVVENSSVLCDEFLAHRL 70

Query: 265 GLIPLTSERAMGM-----RFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
           GLIPL+S++   +         D  A D         V   L V+C+T+  +DVTS+D+ 
Sbjct: 71  GLIPLSSKKVSELFKPYEYMGEDDSATD---------VHLELNVRCLTEQAMDVTSEDMV 121

Query: 430 SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           S D  V P+ F    S + +     GI+IVKLR  Q+L L+ IARKG G
Sbjct: 122 SYDERVKPITFQGTVSDAAKPG---GILIVKLRNKQQLLLKCIARKGTG 167

[98][TOP]
>UniRef100_Q6FPN4 Similar to uniprot|P16370 Saccharomyces cerevisiae YIL021w RPB3 n=1
           Tax=Candida glabrata RepID=Q6FPN4_CANGA
          Length = 312

 Score =  134 bits (336), Expect = 7e-30
 Identities = 77/165 (46%), Positives = 106/165 (64%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKIRE   D + F L + D ++AN+LRRVMI+E+PT+AID VE+E N++VL DEF+AH
Sbjct: 6   PQVKIREATRDNVDFILSNVDLALANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFLAH 65

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S     + +SRDC   D    C+ CSV   L+    ++ST +V +KDL    
Sbjct: 66  RLGLIPLQSTDIEQLEYSRDCFCED---HCDKCSVVLTLQAVGESESTTNVYAKDLL--- 119

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V  +         ++  +G G++I KLRKGQEL+L  IA+KGI
Sbjct: 120 -IVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCIAKKGI 163

[99][TOP]
>UniRef100_Q4P8L3 Putative uncharacterized protein n=1 Tax=Ustilago maydis
           RepID=Q4P8L3_USTMA
          Length = 329

 Score =  134 bits (336), Expect = 7e-30
 Identities = 79/178 (44%), Positives = 109/178 (61%), Gaps = 14/178 (7%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P++ +R+L  D+  F L + D S AN+LRR+MI+++PTVAID+VEI  N++VL DE +AH
Sbjct: 12  PKITVRQLDRDHANFILENVDLSFANSLRRIMIADIPTVAIDMVEIRNNTTVLPDEMLAH 71

Query: 259 RLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLG++PL S + A  +   RDC   DG   C+ CSVE  LR +C T   L+VTS+DL  S
Sbjct: 72  RLGMVPLLSMDCAKALVDHRDCACEDG---CDRCSVELTLRARCTTRGNLEVTSRDLIRS 128

Query: 436 D----HTVVPVDFSAADSSSVETSDGR---------GIIIVKLRKGQELRLRAIARKG 570
           D     T+   D  A  ++      GR          I++VK+ KGQEL +R IARKG
Sbjct: 129 DTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLVKMSKGQELDIRCIARKG 186

[100][TOP]
>UniRef100_B0D0L9 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
           RepID=B0D0L9_LACBS
          Length = 304

 Score =  134 bits (336), Expect = 7e-30
 Identities = 80/183 (43%), Positives = 112/183 (61%), Gaps = 18/183 (9%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V+IRELK D + F L + D + AN+LRRVM++++PTVAID+VEIE+N++VL DEFIAH
Sbjct: 9   PTVRIRELKKDRVNFVLGNVDLAFANSLRRVMMADIPTVAIDMVEIEINTTVLPDEFIAH 68

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLG++PL S      +R +RDC    G   C +C++   L V C  D+T++VTS  L   
Sbjct: 69  RLGMVPLLSSNCDEAIRSTRDCTCLAG---CSFCAIMLVLNVGCHDDTTMEVTSAHL--- 122

Query: 436 DHTVVPVDFSAADSS-SVETSDGRG----------------IIIVKLRKGQELRLRAIAR 564
              V+P      D+S S E    RG                I+I K+RKGQEL+++ +A+
Sbjct: 123 --DVIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAPILICKIRKGQELKVKCVAK 180

Query: 565 KGI 573
           KGI
Sbjct: 181 KGI 183

[101][TOP]
>UniRef100_Q75B05 ADL120Cp n=1 Tax=Eremothecium gossypii RepID=Q75B05_ASHGO
          Length = 311

 Score =  133 bits (334), Expect = 1e-29
 Identities = 76/165 (46%), Positives = 105/165 (63%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKIRE   D + F L + D S+AN+LRR+MI+E+PT+AID VEIE N+SVL DEFI+H
Sbjct: 6   PQVKIREATKDNVDFILSNVDLSLANSLRRIMIAEIPTLAIDSVEIESNTSVLADEFISH 65

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGL+PL S+    + + RDC   D    C+ CSV   L     ++ST +V +KDL    
Sbjct: 66  RLGLVPLQSKDIDQLVYCRDCFCED---HCDRCSVLLTLHAVGESESTTNVYAKDL---- 118

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V  +         ++  +  G++I KLRKGQELRL+ +A+KGI
Sbjct: 119 QIVSDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCVAKKGI 163

[102][TOP]
>UniRef100_Q6CQL6 KLLA0D16170p n=1 Tax=Kluyveromyces lactis RepID=Q6CQL6_KLULA
          Length = 307

 Score =  133 bits (334), Expect = 1e-29
 Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKIRE   D + F L + D ++AN+LRRVMISE+PT+AID VEIE N++VL DEFIAH
Sbjct: 6   PQVKIREATKDNVDFILSNVDLALANSLRRVMISEIPTLAIDSVEIETNTTVLADEFIAH 65

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S     + + RDC   D    C+ CSVE  L     ++ST +V +KDL    
Sbjct: 66  RLGLIPLQSADIDQVVYCRDCYCED---HCDRCSVELILHAIGESESTTNVYAKDLQ--- 119

Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              +  D    +     ++  +  G++I KLRKGQE+R++ IA+KGI
Sbjct: 120 ---ITSDLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCIAKKGI 163

[103][TOP]
>UniRef100_P37382 DNA-directed RNA polymerase II subunit RPB3 n=1
           Tax=Schizosaccharomyces pombe RepID=RPB3_SCHPO
          Length = 297

 Score =  131 bits (330), Expect = 3e-29
 Identities = 74/168 (44%), Positives = 106/168 (63%), Gaps = 5/168 (2%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           + IR +  + + F L +T  +VAN+LRRV+++E+PTVAIDLVEI VN+SV+ DEF+AHRL
Sbjct: 7   ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66

Query: 265 GLIPLTSER-----AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
           G+IPL S        +G+ ++R+CD    D  C  CSVE  L  KC  + T+++ ++DL 
Sbjct: 67  GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123

Query: 430 SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
            S ++ +     A   S       RG +I KLRK QE+ LR IA+KGI
Sbjct: 124 VSSNSSLGHPILADPKS-------RGPLICKLRKEQEISLRCIAKKGI 164

[104][TOP]
>UniRef100_B7Z377 cDNA FLJ57937, highly similar to DNA-directed RNA polymerase II 33
           kDa polypeptide (EC 2.7.7.6) n=1 Tax=Homo sapiens
           RepID=B7Z377_HUMAN
          Length = 155

 Score =  131 bits (329), Expect = 4e-29
 Identities = 70/131 (53%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           FIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF L V+C  D T  VTS+D
Sbjct: 63  FIAHRLGLIPLISDDIVDKLQYSRDCTF---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119

Query: 424 LYSSDHTVVPV 456
           L S+   V+PV
Sbjct: 120 LISNSPRVIPV 130

[105][TOP]
>UniRef100_A8N5W0 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
           okayama7#130 RepID=A8N5W0_COPC7
          Length = 366

 Score =  131 bits (329), Expect = 4e-29
 Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 22/187 (11%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P V++RE+K D + F L + D + AN+ RRV+++++PTVAIDLVE E N+SVL DE+IAH
Sbjct: 8   PIVRVREVKKDKVNFVLENVDLAFANSFRRVVMADIPTVAIDLVEFEANTSVLPDEYIAH 67

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLG IPL S      +R++RDC       QC YC+V+  L V C  D+T++VTS  L   
Sbjct: 68  RLGQIPLISTNCDEAIRYTRDCTCLS---QCSYCAVQLRLDVACNDDTTMEVTSNHL--- 121

Query: 436 DHTVVPVDFSAADSSSVETSDGRG---------------------IIIVKLRKGQELRLR 552
              VVP+D    D    E   G                       ++I K+RKGQELR++
Sbjct: 122 --EVVPLD----DYMQEEIQHGEEKAKRTQWFGHPVGKNEPGTPPVLICKIRKGQELRVK 175

Query: 553 AIARKGI 573
            IA+KGI
Sbjct: 176 CIAKKGI 182

[106][TOP]
>UniRef100_B6QC29 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QC29_PENMQ
          Length = 352

 Score =  130 bits (328), Expect = 6e-29
 Identities = 79/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SVL DEF+AH
Sbjct: 12  PQVTVRETEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYS 432
           RLGLIPL S+     M ++RDC     +  C  CSV   L  +C   D  + V S+DL  
Sbjct: 72  RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL-- 126

Query: 433 SDHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
               VV  D +     +  +   +G+G +I KL KGQEL+L  IARKGI
Sbjct: 127 ----VVTGDRANEWVGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 171

[107][TOP]
>UniRef100_Q0CYF6 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
           Tax=Aspergillus terreus NIH2624 RepID=Q0CYF6_ASPTN
          Length = 331

 Score =  130 bits (326), Expect = 1e-28
 Identities = 74/171 (43%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L   D + AN+LRR M++EVPTVAIDLVE+E N+SVL DEF+AH
Sbjct: 13  PQVTVREAEPYRVDFKLSSVDLAFANSLRRTMLAEVPTVAIDLVEVEKNTSVLPDEFLAH 72

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL--- 426
           RLGLIPL S+     + ++RDC+  D    C  CSV   L  +C  D  + V ++DL   
Sbjct: 73  RLGLIPLNSKNCDQDLEYTRDCECED---HCARCSVTLQLHARCTGDDIMRVYARDLAVA 129

Query: 427 --YSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              ++D    PV         +   +G+G +I KLR+GQEL++  IA+KGI
Sbjct: 130 GERANDWVGTPV---------ITDPEGKGPLICKLRRGQELKMTCIAKKGI 171

[108][TOP]
>UniRef100_C1H5R6 DNA-directed RNA polymerase II subunit RPB3 n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1H5R6_PARBA
          Length = 352

 Score =  130 bits (326), Expect = 1e-28
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE + + + F L   D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH
Sbjct: 14  PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     M +SRDCD    +G C  C V   L V+C  +  + V ++DL   
Sbjct: 74  RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCIVMLSLNVRCTGEDVMKVYARDL--- 127

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              ++  D +     S  +  ++G+G +I KL +GQEL++  IA+KGI
Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172

[109][TOP]
>UniRef100_C1GI99 DNA-directed RNA polymerase II subunit RPB3 n=1
           Tax=Paracoccidioides brasiliensis Pb18
           RepID=C1GI99_PARBD
          Length = 352

 Score =  130 bits (326), Expect = 1e-28
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE + + + F L   D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH
Sbjct: 14  PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     M +SRDCD    +G C  C V   L V+C  +  + V ++DL   
Sbjct: 74  RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL--- 127

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              ++  D +     S  +  ++G+G +I KL +GQEL++  IA+KGI
Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172

[110][TOP]
>UniRef100_C0SC71 DNA-directed RNA polymerase II subunit RPB3 n=1
           Tax=Paracoccidioides brasiliensis Pb03
           RepID=C0SC71_PARBP
          Length = 283

 Score =  130 bits (326), Expect = 1e-28
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE + + + F L   D + AN+LRR M++E+PTVAID+VEIE N+SVL DEF+AH
Sbjct: 14  PQVTVREAEPNRVDFRLSSVDLAFANSLRRTMLAEIPTVAIDVVEIESNTSVLPDEFVAH 73

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     M +SRDCD    +G C  C V   L V+C  +  + V ++DL   
Sbjct: 74  RLGLIPLNSKNCDADMDYSRDCDC---EGGCARCVVMLSLNVRCTGEDVMKVYARDL--- 127

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              ++  D +     S  +  ++G+G +I KL +GQEL++  IA+KGI
Sbjct: 128 ---IIVGDRANEWVGSPVITDAEGKGPVICKLSRGQELKMTCIAKKGI 172

[111][TOP]
>UniRef100_B8M3N2 RNA polymerase II subunit 3 n=1 Tax=Talaromyces stipitatus ATCC
           10500 RepID=B8M3N2_TALSN
          Length = 353

 Score =  130 bits (326), Expect = 1e-28
 Identities = 78/169 (46%), Positives = 106/169 (62%), Gaps = 4/169 (2%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SV+ DEF+AH
Sbjct: 12  PQVTVREAEPYRVDFKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVIPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYS 432
           RLGLIPL S+     M ++RDC     +  C  CSV   L  +C   D  + V S+DL  
Sbjct: 72  RLGLIPLNSKHCDNDMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL-- 126

Query: 433 SDHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
               VV  D +     +  +   +G+G +I KL KGQEL+L  IARKGI
Sbjct: 127 ----VVTGDRANEWVGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 171

[112][TOP]
>UniRef100_UPI000069DABC DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II
           subunit B3) (RNA polymerase II subunit 3) (DNA-directed
           RNA polymerase II subunit C) (DNA-directed RNA
           polymerase II 33 kDa polypeptide) (RPB33) (RPB31). n=1
           Tax=Xenopus (Silurana) tropicalis RepID=UPI000069DABC
          Length = 275

 Score =  129 bits (325), Expect = 1e-28
 Identities = 76/172 (44%), Positives = 112/172 (65%), Gaps = 2/172 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD ++AN++RRV I+EVPT+AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS-K 420
           FIAHR+GLIPLTS+  +  +++SR     +G   C  C+ +F   + C+   +  +T   
Sbjct: 63  FIAHRVGLIPLTSDDIVDKLQYSRGNSVTEG---CR-CANKFTGLLGCLPFPSFQITQVT 118

Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            L ++    + V   + D+   +  +   I+IVKLRKGQELRLRA A+KG G
Sbjct: 119 KLVNTTFFSLQVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFG 170

[113][TOP]
>UniRef100_C5DWL5 ZYRO0D15796p n=1 Tax=Zygosaccharomyces rouxii CBS 732
           RepID=C5DWL5_ZYGRC
          Length = 308

 Score =  129 bits (325), Expect = 1e-28
 Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+VKIRE   + + F L   + ++AN+LRRVMI+E+PT+AID VE+E N+SVL DEFIAH
Sbjct: 6   PQVKIREATRENVDFILSHVELAMANSLRRVMIAEIPTLAIDSVEVETNTSVLADEFIAH 65

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPL S     + + RDC   D    C+ CSV   L+    ++ST +V +KDL    
Sbjct: 66  RLGLIPLQSTDIEQLEYCRDCFCED---HCDKCSVVLTLQAIGESESTTNVYAKDL---- 118

Query: 439 HTVVPVDFSAADSSS--VETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V+  +    +     ++  +G G++I KLRKGQEL L+ +A+KGI
Sbjct: 119 --VIVSNLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLKCVAKKGI 163

[114][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
           subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
           CCMP1335 RepID=B8BWN8_THAPS
          Length = 297

 Score =  129 bits (324), Expect = 2e-28
 Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 10/177 (5%)
 Frame = +1

Query: 73  RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
           R P+V+I  +   +++F L +TD S+AN LRR+MI+EVPT+AIDLVE   NSSVLNDE+I
Sbjct: 2   RFPKVEILSMAPHHIQFILSETDTSMANTLRRIMIAEVPTLAIDLVEYSENSSVLNDEYI 61

Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHL----------RVKCMTDST 402
           AHRLGL+P+   R M     ++C   D   +C  C VEF L          R     D  
Sbjct: 62  AHRLGLVPI---RFMAEGSLKECVCYD---RCPRCCVEFELDVNFDKVNQTRPDTERDLA 115

Query: 403 LDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           L VTS+DL S++  V P  F   +    + S   GI IVKL  GQ L+L+AIAR GI
Sbjct: 116 LTVTSRDLISNNMLVSPAHF--LNEEEQDESHDEGISIVKLGPGQHLKLKAIARMGI 170

[115][TOP]
>UniRef100_A9URC4 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9URC4_MONBE
          Length = 276

 Score =  129 bits (324), Expect = 2e-28
 Identities = 76/168 (45%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           PR+++ E   D + F L+  D ++AN+ RRVMI+EVPT+AID V I  N+SVL+DEF+AH
Sbjct: 11  PRIEVTEHNHDEITFVLKSCDLALANSFRRVMIAEVPTMAIDAVHIAKNTSVLHDEFLAH 70

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RLGLIPLTSE A    + RDC  C+    C++C V   L V+  T+    VT+ DL S  
Sbjct: 71  RLGLIPLTSEAADKFYYPRDCTLCEMG--CDHCQVMLTLDVEGHTEEPTHVTTDDLISQ- 127

Query: 439 HTVVPVDFSAAD--SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
                 DF A    S+  E++    I+I KL KGQ ++L A A+KG G
Sbjct: 128 ---AAGDFMAVKPISAREESNIRNPIVICKLAKGQRIQLTAFAKKGFG 172

[116][TOP]
>UniRef100_A2QC01 Catalytic activity: N nucleoside triphosphate <=> N diphosphate +
           (RNA)(N) n=1 Tax=Aspergillus niger CBS 513.88
           RepID=A2QC01_ASPNC
          Length = 338

 Score =  129 bits (323), Expect = 2e-28
 Identities = 72/166 (43%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L   D + AN+LRRVM+SE+PT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12  PQVTVREAEPTRVDFKLTSVDLAFANSLRRVMLSEIPTMAIDLVEVEKNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     + ++RDC+  D    C  CSV   L  +C  D  + V ++DL  S
Sbjct: 72  RLGLIPLISKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTGDDIMRVYARDLVVS 128

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                        +  +   +G G +I KLR+GQEL++  IA+KGI
Sbjct: 129 GERA----NEWVGNPVILDPEGNGPLICKLRRGQELKMTCIAKKGI 170

[117][TOP]
>UniRef100_A1C6Y7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus clavatus
           RepID=A1C6Y7_ASPCL
          Length = 333

 Score =  128 bits (322), Expect = 3e-28
 Identities = 72/171 (42%), Positives = 108/171 (63%), Gaps = 6/171 (3%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +  ++ F+L   D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12  PQVTVREAEPYHVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVERNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY-- 429
           RLGLIPL S+     + ++RDCD  D   +C  CSV   L  +C  D  + V ++DL   
Sbjct: 72  RLGLIPLNSKNCDQDVEYTRDCDCED---RCARCSVTLTLHARCTGDEIMPVYARDLVVT 128

Query: 430 ---SSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              +++    PV         +   +G+G +I KLR+GQEL++  IA+KG+
Sbjct: 129 GERANEWVGTPV---------LTDPEGKGSLICKLRRGQELKMTCIAKKGM 170

[118][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
           Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
          Length = 348

 Score =  128 bits (321), Expect = 4e-28
 Identities = 72/168 (42%), Positives = 98/168 (58%)
 Frame = +1

Query: 73  RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
           R P ++I E     +KF L +TD S+ANALRR+M++E+PT+AIDLV I  N+SVL+DEFI
Sbjct: 7   RTPHIEITEFSPSVIKFILSNTDVSMANALRRIMLAEIPTLAIDLVTIIDNTSVLHDEFI 66

Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
            HRLGL+P+ S +     F    D C    +C  CSV++ L +KC   +  +VT  D+YS
Sbjct: 67  VHRLGLLPIDSRQIRDFNFK---DRCGCQERCNKCSVDYTLDLKCEGPTVRNVTHLDIYS 123

Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           +   V  +         V   +  GI+I KL  GQ L  R  A KGIG
Sbjct: 124 T-LPVPNIPLPVPRKEDVTDPNNEGILIAKLGPGQSLTARMTATKGIG 170

[119][TOP]
>UniRef100_C5GT99 RNA polymerase II subunit 3 n=2 Tax=Ajellomyces dermatitidis
           RepID=C5GT99_AJEDR
          Length = 346

 Score =  128 bits (321), Expect = 4e-28
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F L   D + AN+LRR +++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13  PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEVPTVAIDVVEIESNTSVLPDEFIAH 72

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     M +SRDCD    +G C  C V   L+ +C  +  + V ++DL   
Sbjct: 73  RLGLIPLNSKNCDADMYYSRDCDC---EGGCARCVVTLSLQARCTGEDIMKVYARDL--- 126

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              VV  D +     +  +  ++G+G +I KLR+GQE+++  +A+KGI
Sbjct: 127 ---VVVGDRANEWVGNPVITDAEGKGPLICKLRRGQEIKMTCVAKKGI 171

[120][TOP]
>UniRef100_C0NSH0 DNA-directed RNA polymerase II polypeptide n=1 Tax=Ajellomyces
           capsulatus G186AR RepID=C0NSH0_AJECG
          Length = 475

 Score =  128 bits (321), Expect = 4e-28
 Identities = 72/168 (42%), Positives = 106/168 (63%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F L   D + AN+LRR +++E+PTVAID+VEIE N+SVL DEFI+H
Sbjct: 13  PQVTVREAEPHRVDFRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISH 72

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     M +SRDCD    +G C  C V   L+ +C  +  + V ++DL   
Sbjct: 73  RLGLIPLNSKNCDADMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL--- 126

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              VV  D +     +  +  ++G+G +I KLR+GQE+++  IA+KGI
Sbjct: 127 ---VVVGDRANEWVGNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGI 171

[121][TOP]
>UniRef100_Q2UF63 RNA polymerase II n=1 Tax=Aspergillus oryzae RepID=Q2UF63_ASPOR
          Length = 342

 Score =  127 bits (319), Expect = 6e-28
 Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L   D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12  PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     + ++RDC+  D    C  CSV   L  +C  D  + V ++DL  S
Sbjct: 72  RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                        +  +   +G G +I KLR+GQEL++  IA+KGI
Sbjct: 129 GERA----NEWVGNPVITDPEGNGPLICKLRRGQELKMTCIAKKGI 170

[122][TOP]
>UniRef100_C8V1J2 RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090) n=2
           Tax=Emericella nidulans RepID=C8V1J2_EMENI
          Length = 333

 Score =  127 bits (319), Expect = 6e-28
 Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L   D + AN+LRRVM++E+PT+AID+VE+E NSSVL DE +AH
Sbjct: 12  PQVTVREAEPYRVDFKLSSVDLAFANSLRRVMLAEIPTMAIDIVEVEKNSSVLPDEMLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     + ++RDC+  D    C  CSV   L  +C +D  + V ++DL  +
Sbjct: 72  RLGLIPLDSKNCDQDVEYTRDCECED---HCARCSVTLSLHARCTSDEIMRVYARDLVIT 128

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                        +  +   DG G +I KLR+GQEL++  IA+KGI
Sbjct: 129 GERA----NEWVGNPVITDPDGNGPLICKLRRGQELKMTCIAKKGI 170

[123][TOP]
>UniRef100_B8NGG7 RNA polymerase II subunit 3 n=1 Tax=Aspergillus flavus NRRL3357
           RepID=B8NGG7_ASPFN
          Length = 338

 Score =  127 bits (319), Expect = 6e-28
 Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L   D + AN+LRR M++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12  PQVTVREAEPYRVDFKLSSVDLAFANSLRRAMLAEVPTIAIDLVEVEKNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     + ++RDC+  D    C  CSV   L  +C  D  + V ++DL  S
Sbjct: 72  RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDDIMRVYARDLVVS 128

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                        +  +   +G G +I KLR+GQEL++  IA+KGI
Sbjct: 129 GERA----NEWVGNPVITDPEGNGPLICKLRRGQELKMTCIAKKGI 170

[124][TOP]
>UniRef100_A1DHL4 RNA polymerase II subunit 3 n=1 Tax=Neosartorya fischeri NRRL 181
           RepID=A1DHL4_NEOFI
          Length = 336

 Score =  127 bits (318), Expect = 8e-28
 Identities = 70/166 (42%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F+L   D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AH
Sbjct: 12  PQVTVREAEPYRVDFKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+     + ++RDC+  D    C  CSV   L  +C  D  + V ++DL  S
Sbjct: 72  RLGLIPLNSKNCDQDVEYTRDCECED---HCARCSVTLTLHARCTGDEIMPVYARDLVVS 128

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
                           +   +G+G +I KLR+GQEL++  +A+KGI
Sbjct: 129 GERA----NEWVGDPVITDPEGKGPLICKLRRGQELKMTCVAKKGI 170

[125][TOP]
>UniRef100_UPI000155CFD6 PREDICTED: similar to Polymerase (RNA) II (DNA directed)
           polypeptide C n=1 Tax=Ornithorhynchus anatinus
           RepID=UPI000155CFD6
          Length = 352

 Score =  125 bits (313), Expect = 3e-27
 Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
 Frame = +1

Query: 166 RVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDG 342
           R  I   P ++ID V+I+ NSSVL+DEFIAHRLGLIPLTS+  +  +++SRDC     + 
Sbjct: 113 RSPIQAPPILSIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTC---EE 169

Query: 343 QCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVK 522
            C  CSVEF L V+C  D T  VTS+DL S+   V+PV   + D+   +  +   I+IVK
Sbjct: 170 FCPECSVEFTLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVK 229

Query: 523 LRKGQELRLRAIARKGIG 576
           LRKGQELRLRA A+KG G
Sbjct: 230 LRKGQELRLRAYAKKGFG 247

[126][TOP]
>UniRef100_C4R7L2 RNA polymerase II third largest subunit B44, part of central core
           n=1 Tax=Pichia pastoris GS115 RepID=C4R7L2_PICPG
          Length = 304

 Score =  124 bits (312), Expect = 4e-27
 Identities = 75/169 (44%), Positives = 104/169 (61%), Gaps = 1/169 (0%)
 Frame = +1

Query: 70  ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
           ++ P+V I   +DD ++  L D + S+AN+LRR M++EVPT+AIDLVEI++N+SVL DEF
Sbjct: 2   SKEPKVNIINAQDDEVELMLSDVNLSLANSLRRTMLAEVPTLAIDLVEIKMNTSVLADEF 61

Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
           I+HRLGLIPL SE    M++SRDC   D    C+ CSV   L  +   +      + D+Y
Sbjct: 62  ISHRLGLIPLVSEDVEEMKYSRDCTCED---YCDECSVVLELSARHEGEE----GTTDVY 114

Query: 430 SSDHTVVPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGI 573
           SS    V    +      V   D  +GI++ KLR  QEL +R IA+KGI
Sbjct: 115 SSSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCIAKKGI 163

[127][TOP]
>UniRef100_A4R7L3 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
           RepID=A4R7L3_MAGGR
          Length = 330

 Score =  124 bits (311), Expect = 5e-27
 Identities = 71/164 (43%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           VKI      ++ FEL + D S+AN++RRVM++E+PTVAID  EI+ N+SVL DEFIAHRL
Sbjct: 17  VKIFHADSVHVNFELSNVDLSLANSIRRVMLAEIPTVAIDNCEIKENTSVLADEFIAHRL 76

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GL+PL++  A  + ++RDCD    +  CE CSV   +  KC ++    V    +Y+ D  
Sbjct: 77  GLVPLSARGASELVYARDCDC---EQYCENCSVIITIHAKCESEDPNYVMK--VYARDMV 131

Query: 445 VVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
           V     + +  + V T  DG G+I+ KLR+ QE+ +R +A+KGI
Sbjct: 132 VDGRRVNQSVGTPVITDPDGLGVILFKLRRNQEVHIRCVAKKGI 175

[128][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
           RepID=Q5CSH3_CRYPV
          Length = 355

 Score =  124 bits (310), Expect = 7e-27
 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
 Frame = +1

Query: 73  RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
           R P+ +I EL  + ++F L +TD S+AN LRR++++E+PT+AIDLV +  N+SVL+DEFI
Sbjct: 8   RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67

Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
            HR+GLIPL S       F    D C+   +C  CSVE+ L V C   +T +VT  D+  
Sbjct: 68  VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124

Query: 433 -SDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
            +  T+VP+     D S     DG   GI+I KL  GQ + +R  A KGIG
Sbjct: 125 VATSTLVPMPVPKKDDS----VDGMNNGILIAKLGPGQRIAMRMTACKGIG 171

[129][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
           RepID=Q5CNH1_CRYHO
          Length = 355

 Score =  124 bits (310), Expect = 7e-27
 Identities = 74/171 (43%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
 Frame = +1

Query: 73  RMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFI 252
           R P+ +I EL  + ++F L +TD S+AN LRR++++E+PT+AIDLV +  N+SVL+DEFI
Sbjct: 8   RSPKAEITELTPNSIRFTLSNTDLSMANTLRRIILAEIPTLAIDLVTMIDNTSVLHDEFI 67

Query: 253 AHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
            HR+GLIPL S       F    D C+   +C  CSVE+ L V C   +T +VT  D+  
Sbjct: 68  VHRMGLIPLDSTNIRDFNFK---DRCECQERCNKCSVEYLLDVTCEGGATRNVTHYDIQP 124

Query: 433 -SDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
            +  T+VP+     D S     DG   GI+I KL  GQ + +R  A KGIG
Sbjct: 125 VATSTLVPMPVPKKDDS----VDGMNNGILIAKLGPGQRIAMRMTACKGIG 171

[130][TOP]
>UniRef100_Q1DX59 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
           RepID=Q1DX59_COCIM
          Length = 345

 Score =  124 bits (310), Expect = 7e-27
 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F L   D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13  PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+   + M ++R+CD    +G C  C +   L  KC  +  + V ++DL   
Sbjct: 73  RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCVITLQLHAKCTGEGVMVVYARDL--- 126

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              VV  D +     +  +    G+G II KLR+GQE+++    +KGI
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGI 171

[131][TOP]
>UniRef100_C5P0B5 DNA-directed RNA polymerase II 45 kDa polypeptide, putative n=1
           Tax=Coccidioides posadasii C735 delta SOWgp
           RepID=C5P0B5_COCP7
          Length = 345

 Score =  124 bits (310), Expect = 7e-27
 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F L   D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13  PQVTVREAEPHRVDFRLTSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+   + M ++R+CD    +G C  C +   L  KC  +  + V ++DL   
Sbjct: 73  RLGLIPLHSKNCDVDMVYARECDC---EGGCSRCLITLQLHAKCTGEGVMVVYARDL--- 126

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              VV  D +     +  +    G+G II KLR+GQE+++    +KGI
Sbjct: 127 ---VVVGDRANEWVGNPVINDPAGKGPIICKLRRGQEVKMTCTVKKGI 171

[132][TOP]
>UniRef100_B6QC30 RNA polymerase II subunit 3 n=1 Tax=Penicillium marneffei ATCC
           18224 RepID=B6QC30_PENMQ
          Length = 370

 Score =  124 bits (310), Expect = 7e-27
 Identities = 75/155 (48%), Positives = 98/155 (63%), Gaps = 4/155 (2%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
           F+L + D ++ANALRR MI+EVPTVAID+VE+EVN+SVL DEF+AHRLGLIPL S+    
Sbjct: 44  FKLSNVDLTLANALRRTMIAEVPTVAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDN 103

Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKC-MTDSTLDVTSKDLYSSDHTVVPVDFSA-- 468
            M ++RDC     +  C  CSV   L  +C   D  + V S+DL      VV  D +   
Sbjct: 104 DMEYNRDCTC---ESWCSRCSVRLTLHARCNQADDVMKVYSRDL------VVTGDRANEW 154

Query: 469 ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             +  +   +G+G +I KL KGQEL+L  IARKGI
Sbjct: 155 VGNPVITDPEGKGPLIAKLIKGQELKLTCIARKGI 189

[133][TOP]
>UniRef100_B2W6Y7 DNA-directed RNA polymerase subunit D n=1 Tax=Pyrenophora
           tritici-repentis Pt-1C-BFP RepID=B2W6Y7_PYRTR
          Length = 334

 Score =  123 bits (308), Expect = 1e-26
 Identities = 68/163 (41%), Positives = 98/163 (60%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           V+  E       F +++ +   AN+LRRVM+SE+PT+AID+VE+  N+SVL DEF+ HRL
Sbjct: 12  VRFLEANSQRASFIVQNFNLETANSLRRVMLSEIPTLAIDVVEVLDNTSVLADEFVCHRL 71

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GL+PL+S+    + +SRDCD    +G C+ C+V   L  KC     + V ++DL     T
Sbjct: 72  GLVPLSSKGVDDLIYSRDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVYARDLVIESRT 128

Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             P D        +  S+G G  IVKLR+GQ + +R IA+KGI
Sbjct: 129 --PND--EVGKPVITDSEGTGSCIVKLRRGQAINMRCIAKKGI 167

[134][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
           GT1 RepID=B9PNQ8_TOXGO
          Length = 484

 Score =  122 bits (306), Expect = 2e-26
 Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
 Frame = +1

Query: 58  GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
           G S A  P + ++E+  + +KF L + D S+AN LRRVMISEVP++AIDLV +  N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203

Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
           +DE+I+HRLGL+P+ S R        DCD  D    C  CSV++ L V C  DS L VT 
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259

Query: 418 KD----------LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
           +D          L S+    +           ++  +  GI IVKLRK Q + +R  A K
Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319

Query: 568 GIG 576
           GIG
Sbjct: 320 GIG 322

[135][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
           RepID=B6KGB1_TOXGO
          Length = 484

 Score =  122 bits (306), Expect = 2e-26
 Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
 Frame = +1

Query: 58  GASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVL 237
           G S A  P + ++E+  + +KF L + D S+AN LRRVMISEVP++AIDLV +  N+SVL
Sbjct: 144 GGSMAYEPSIVVKEVSQNKVKFLLENCDVSIANGLRRVMISEVPSLAIDLVTVYENTSVL 203

Query: 238 NDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
           +DE+I+HRLGL+P+ S R        DCD  D    C  CSV++ L V C  DS L VT 
Sbjct: 204 HDEYISHRLGLLPIDSTRVAEFVNRDDCDCAD---HCSRCSVQYALDVVCERDSLL-VTH 259

Query: 418 KD----------LYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
           +D          L S+    +           ++  +  GI IVKLRK Q + +R  A K
Sbjct: 260 RDIVADNARGASLASAGFLDLGCPMPVPLLREMQEKEMDGIPIVKLRKNQSVNMRMTATK 319

Query: 568 GIG 576
           GIG
Sbjct: 320 GIG 322

[136][TOP]
>UniRef100_C4JV60 DNA-directed RNA polymerase II 45 kDa polypeptide n=1
           Tax=Uncinocarpus reesii 1704 RepID=C4JV60_UNCRE
          Length = 345

 Score =  122 bits (305), Expect = 3e-26
 Identities = 72/168 (42%), Positives = 103/168 (61%), Gaps = 3/168 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +R+++   + F L   D + AN+LRRVM++EVPTVAID+VEIE N+SVL DEFIAH
Sbjct: 13  PQVTVRDVETHRVDFRLMSVDLAFANSLRRVMLTEVPTVAIDVVEIESNTSVLPDEFIAH 72

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S+   + M ++RDCD    +G C  C +   L  KC  +  + V ++DL   
Sbjct: 73  RLGLIPLHSKNCDVDMVYARDCDC---EGGCSRCIITLQLHAKCTGEGVMVVYARDL--- 126

Query: 436 DHTVVPVDFSA--ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
              VV  D +     +  +    G+G II KLR+ QE+++    +KGI
Sbjct: 127 ---VVIGDRANEWVGNPVINDPAGKGPIICKLRRDQEVKMTCTVKKGI 171

[137][TOP]
>UniRef100_B0XTA3 RNA polymerase II subunit 3 n=2 Tax=Aspergillus fumigatus
           RepID=B0XTA3_ASPFC
          Length = 392

 Score =  121 bits (304), Expect = 3e-26
 Identities = 67/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
           F+L   D + AN+LRRV+++EVPT+AIDLVE+E N+SVL DEF+AHRLGLIPL S+    
Sbjct: 82  FKLSSVDLAFANSLRRVILAEVPTMAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQ 141

Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADS 477
            + ++RDCD  D    C  CSV   L  +C  D  + V ++DL  S              
Sbjct: 142 DVEYTRDCDCED---HCARCSVTLTLHARCTGDEIMPVYARDLVVSGERA----NEWVGD 194

Query: 478 SSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             +   +G+G +I KLR+GQEL++  +A+KGI
Sbjct: 195 PVITDPEGKGPLICKLRRGQELKMTCVAKKGI 226

[138][TOP]
>UniRef100_B3L2P7 Dna-directed rna polymerase II, putative n=1 Tax=Plasmodium
           knowlesi strain H RepID=B3L2P7_PLAKH
          Length = 334

 Score =  121 bits (303), Expect = 4e-26
 Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 3/172 (1%)
 Frame = +1

Query: 70  ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
           A+   V+I +L  D M F L +++  +ANALRR+M+SE+PT+AID+V +  N+S  +DEF
Sbjct: 10  AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 69

Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
           +AHRLGLIP+ S       F   C   +    C  C++++ ++VKC   S +DVT  D+ 
Sbjct: 70  LAHRLGLIPIDSRNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIDVTHYDIE 126

Query: 430 SSDH---TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           S +H     +PV F   ++   +++    I IV L K Q L ++ IA KGIG
Sbjct: 127 SVEHEPNVPMPVPFEDRNNKMAQSN---AIPIVTLSKNQTLHMKLIATKGIG 175

[139][TOP]
>UniRef100_A5K6U4 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium vivax
           RepID=A5K6U4_PLAVI
          Length = 333

 Score =  120 bits (300), Expect = 1e-25
 Identities = 65/170 (38%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
 Frame = +1

Query: 70  ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
           A+   V+I +L  D M F L +++  +ANALRR+M+SE+PT+AID+V +  N+S  +DEF
Sbjct: 9   AKRHEVEITKLTKDEMTFVLHNSNTGMANALRRIMLSEIPTLAIDVVNVYENTSPFHDEF 68

Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLY 429
           +AHRLGLIP+ S       F   C   +    C  C++++ ++VKC   S +++T  D+ 
Sbjct: 69  LAHRLGLIPIDSTNVKNFEFREKCKCKE---TCSKCTIQYLIQVKCNNVSKIEITHHDIE 125

Query: 430 SSDHTV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           S +H   VP+     D ++ + ++   I IV L K Q L ++ IA KGIG
Sbjct: 126 SVEHEPNVPMPVPLEDRNN-QMAESNAIPIVTLSKNQTLHMKLIATKGIG 174

[140][TOP]
>UniRef100_A6RAE4 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus
           NAm1 RepID=A6RAE4_AJECN
          Length = 576

 Score =  120 bits (300), Expect = 1e-25
 Identities = 67/154 (43%), Positives = 98/154 (63%), Gaps = 3/154 (1%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
           F L   D + AN+LRR +++E+PTVAID+VEIE N+SVL DEFI+HRLGLIPL S+    
Sbjct: 50  FRLSSVDLAFANSLRRTLLAEIPTVAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDA 109

Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSA--A 471
            M +SRDCD    +G C  C V   L+ +C  +  + V ++DL      V+  D +    
Sbjct: 110 DMEYSRDCDC---EGGCARCVVTLQLQARCTGEDIMKVYARDL------VIVGDRANEWV 160

Query: 472 DSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
            +  +  ++G+G +I KLR+GQE+++  IA+KGI
Sbjct: 161 GNPVIMDAEGKGPVICKLRRGQEIKMTCIAKKGI 194

[141][TOP]
>UniRef100_UPI0000E242AB PREDICTED: similar to RNA polymerase II subunit hRPB33 isoform 2
           n=1 Tax=Pan troglodytes RepID=UPI0000E242AB
          Length = 242

 Score =  119 bits (299), Expect = 1e-25
 Identities = 68/129 (52%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
 Frame = +1

Query: 193 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEF 369
           +AID V+I+ NSSVL+DEFIAHRLGLIPL S+  +  +++SRDC     +  C  CSVEF
Sbjct: 12  LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEF 68

Query: 370 HLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRL 549
            L V+C  D T  VTS+DL S+   V+PV     D+   +  +   I+IVKLRKGQELRL
Sbjct: 69  TLDVRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRL 128

Query: 550 RAIARKGIG 576
           RA A+KG G
Sbjct: 129 RAYAKKGFG 137

[142][TOP]
>UniRef100_C5FPK3 RNA polymerase II subunit 3 n=1 Tax=Microsporum canis CBS 113480
           RepID=C5FPK3_NANOT
          Length = 359

 Score =  119 bits (299), Expect = 1e-25
 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA-M 297
           F L   D + AN+ RR +++E+PTVAID+VEIEVN+SVL DEFI+HRLGLIPL S+    
Sbjct: 37  FRLSSVDLAFANSFRRTILAEIPTVAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDT 96

Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADS 477
            M +SRDCD    +G C+ C +   L  KC ++  + V ++DL      VV    +    
Sbjct: 97  DMLYSRDCDC---EGGCQRCVINLSLHAKCTSEEIMKVYARDL-----VVVGDRANEWVG 148

Query: 478 SSVETS-DGRGIIIVKLRKGQELRLRAIARKGI 573
           + V T  +G+G II KLR+GQE++   I +KGI
Sbjct: 149 NPVLTDPEGKGPIICKLRRGQEVKFNCIVKKGI 181

[143][TOP]
>UniRef100_Q6C2S4 YALI0F05566p n=1 Tax=Yarrowia lipolytica RepID=Q6C2S4_YARLI
          Length = 314

 Score =  119 bits (298), Expect = 2e-25
 Identities = 69/143 (48%), Positives = 91/143 (63%)
 Frame = +1

Query: 145 SVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMGMRFSRDCD 324
           ++AN+LRRVM++E+PT+AIDLVEI  N+SVL DEFI+HRLGLIPL S+    + +SRDC 
Sbjct: 21  TLANSLRRVMLAEIPTLAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVNDLEYSRDC- 79

Query: 325 ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAADSSSVETSDGR 504
            C  D  C+ CSV   L   C  D T+D+ S+DL    HT    +              +
Sbjct: 80  VC--DEYCDKCSVVLMLDATCTGDDTMDIYSRDLMV--HTT--PERPELGKPIYTDPAKK 133

Query: 505 GIIIVKLRKGQELRLRAIARKGI 573
           GI+I KLRK Q LR++ IA+KGI
Sbjct: 134 GILICKLRKNQSLRIKCIAKKGI 156

[144][TOP]
>UniRef100_Q0UL31 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UL31_PHANO
          Length = 335

 Score =  119 bits (297), Expect = 2e-25
 Identities = 66/163 (40%), Positives = 97/163 (59%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           V+  E       F +++ +   AN+LRRVM++E+PT+AID+VE+  N+SVL DEF+ HRL
Sbjct: 12  VRFLEANSQRANFIVQNFNLETANSLRRVMLAEIPTLAIDVVEVLDNTSVLADEFVCHRL 71

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GLIPL+S     + ++RDCD    +G C+ C+V   L  KC     + V ++DL    + 
Sbjct: 72  GLIPLSSRGVDDLLYARDCDC---EGYCDNCAVVLSLNAKCTGSEIMKVFARDLVIESNR 128

Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             P D        +  S+G G  IVKLR+GQ + +R IA+KGI
Sbjct: 129 --PND--EVGRPVITDSEGTGSCIVKLRRGQAINMRCIAKKGI 167

[145][TOP]
>UniRef100_Q8I2S6 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
           falciparum 3D7 RepID=Q8I2S6_PLAF7
          Length = 335

 Score =  117 bits (292), Expect = 8e-25
 Identities = 64/166 (38%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++ I +L  D + F L ++++ +ANALRR+M+SE+PT+AID+V +  N+S  +DEFIAHR
Sbjct: 12  QINITKLTKDELYFTLYNSNSGIANALRRIMLSEIPTLAIDVVNVYENTSAFHDEFIAHR 71

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           LGLIP+ S       F   C   +    C  C++++ + VKC   + +DV+  D+ S +H
Sbjct: 72  LGLIPIDSRNVNNYEFREKCKCKE---TCSKCTIQYIIEVKCNHSNKIDVSHYDIESLEH 128

Query: 442 TV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
              VP+     + +SV  +    I IV L K Q L ++ IA KGIG
Sbjct: 129 EPNVPMPIPHGNKNSVSEN---AIPIVTLSKNQTLHMKLIATKGIG 171

[146][TOP]
>UniRef100_A9BL73 Rpb3 n=1 Tax=Cryptophyta RepID=A9BL73_9CRYP
          Length = 307

 Score =  117 bits (292), Expect = 8e-25
 Identities = 74/175 (42%), Positives = 106/175 (60%), Gaps = 9/175 (5%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P ++I  L +   K  L++T+ S+ N+LRRVMI+EVPT AIDL+ IE+NSSV++DEF++H
Sbjct: 4   PSLEILNLSNYESKIILKETNISILNSLRRVMINEVPTFAIDLLFIEINSSVMHDEFLSH 63

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--------MTD-STLDV 411
           RLGL+PL S  A   R++R+CD    +  C  CS +F L +           TD +T+D 
Sbjct: 64  RLGLLPLFSNFAHEFRYTRECDC---EQYCSKCSFKFSLDIYAEKFPQSIFSTDLNTIDK 120

Query: 412 TSKDLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
                Y     + P+ +    SS  ET D + I+I KL  GQ ++L AIA+KGIG
Sbjct: 121 KENFFYQQ---INPIHY----SSLKETLDQKPILIGKLGIGQRIKLVAIAKKGIG 168

[147][TOP]
>UniRef100_C4V9J5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
           RepID=C4V9J5_NOSCE
          Length = 233

 Score =  115 bits (287), Expect = 3e-24
 Identities = 74/165 (44%), Positives = 95/165 (57%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++ I E  D+ +KF LRDT  S ANALRR++ISEVPTV IDLVEIE+N++ L DE I+HR
Sbjct: 2   KILIEESTDNIIKFTLRDTYVSYANALRRILISEVPTVTIDLVEIEINNTSLPDEMISHR 61

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           LGL+PL +++ +  R     D C  D  C+ CSV   L V   TD  + VT KDL S D 
Sbjct: 62  LGLVPLYTKKDLVFR-----DDCACDDICDKCSVSLTLNVSNNTDMPMVVTCKDLKSQDD 116

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            V+        SS V         I KL   Q L++   A KG+G
Sbjct: 117 VVI-------RSSPV---------ICKLGTRQNLKVICKAFKGVG 145

[148][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
           marinus ATCC 50983 RepID=C5LCN7_9ALVE
          Length = 336

 Score =  114 bits (286), Expect = 4e-24
 Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
 Frame = +1

Query: 76  MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
           MP +++  L  D +KF + + + ++ANALRR+MI+EVPT+AID V IE NSS L DEF+A
Sbjct: 12  MPVIEVTMLTADLIKFTIFNANQAIANALRRIMIAEVPTLAIDTVTIEENSSPLFDEFVA 71

Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           HRLGL+P+ S+        +DC        C  C+V++ L V        DVT  D+   
Sbjct: 72  HRLGLLPINSKEVDSYSDPKDCQCY---SSCPNCTVKYTLDVIAEDHGVTDVTHLDIQPV 128

Query: 436 DHTVV------PVDFSAADSSSVETSDGR-GIIIVKLRKGQELRLRAIARKGIG 576
           D          P+     D +  E  + R GI+I KLR+ Q+L +   ARKG+G
Sbjct: 129 DQGTSIPESRRPLPVPLWDRTKTEEENRRNGIVIAKLRRNQQLTMHMEARKGVG 182

[149][TOP]
>UniRef100_B6GWS8 Pc12g07350 protein n=1 Tax=Penicillium chrysogenum Wisconsin
           54-1255 RepID=B6GWS8_PENCW
          Length = 335

 Score =  113 bits (283), Expect = 9e-24
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+V +RE +   + F L   D + AN+LRR +++EVPT+A+DL+EIE N+SVL DEF+AH
Sbjct: 12  PQVTVREAEPYRVDFRLTAVDLAFANSLRRTILAEVPTLALDLIEIESNTSVLPDEFLAH 71

Query: 259 RLGLIPLTSERA-MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLG+IPL S      + ++RDCD  D    C  CSV   L  +C +          +Y+ 
Sbjct: 72  RLGMIPLNSYNCDQDLDYTRDCDCED---HCVRCSVTLSLHARCGSG------IMSVYAR 122

Query: 436 DHTVVPVDFSAADSSSVETS-DGRGIIIVKLRKGQELRLRAIARKG 570
           D  VV    +      V T  + +G +I KLRKGQE+++  +A+KG
Sbjct: 123 DLIVVGERINDKIGDPVTTDPENKGPLICKLRKGQEVKMTCLAKKG 168

[150][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
           RepID=Q4UFZ3_THEAN
          Length = 354

 Score =  112 bits (281), Expect = 2e-23
 Identities = 66/182 (36%), Positives = 108/182 (59%), Gaps = 7/182 (3%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+ A     P +++ +L+ D M F L ++D S ANA+RRV++SE+P++AI++V +  N+S
Sbjct: 1   MDWAPRQIKPSIEVVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VL+DE+I+HRLGL+P+ S  A    F   C   D   +C  C+V++ L V C   ++  V
Sbjct: 61  VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCNDSNSRLV 117

Query: 412 TSKDLYSSD-HTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
           T  D+   D H+       +P+    AD ++   +   GI IVKL++GQ + ++  A KG
Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGQSINMKLTASKG 176

Query: 571 IG 576
           +G
Sbjct: 177 LG 178

[151][TOP]
>UniRef100_Q8SRR5 DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN n=1 Tax=Encephalitozoon
           cuniculi RepID=Q8SRR5_ENCCU
          Length = 240

 Score =  112 bits (279), Expect = 3e-23
 Identities = 64/167 (38%), Positives = 95/167 (56%)
 Frame = +1

Query: 76  MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
           M  + + EL  ++++F L +T    ANALRR++ISEVPT+AID+VEIE N++VL DE +A
Sbjct: 1   MVALTVEELTPEHIRFTLSNTTVGYANALRRILISEVPTIAIDMVEIERNNTVLPDEVLA 60

Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           HRLGLIP+ S+R +  +     + C   G C  CSV F + V    D+   V+++D+   
Sbjct: 61  HRLGLIPIYSKRELKYK-----EECSCSGFCSECSVVFEIDVVHTDDTLRTVSTRDIVCD 115

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           +  V+                  G +I KL + Q L+ R I RKG+G
Sbjct: 116 EEDVIIKS---------------GPVITKLARDQGLKARCIGRKGVG 147

[152][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
           RepID=Q4N9T5_THEPA
          Length = 354

 Score =  111 bits (278), Expect = 4e-23
 Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           M+ A     P ++I +L+ D M F L ++D S ANA+RRV++SE+P++AI++V +  N+S
Sbjct: 1   MDWAPRQIKPSIEIVDLRKDRMDFILLNSDVSTANAIRRVILSEIPSLAIEIVTVLENTS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VL+DE+I+HRLGL+P+ S  A    F   C   D   +C  C+V++ L V C    +  V
Sbjct: 61  VLHDEYISHRLGLLPIDSTLASEFEFRDRCQCTD---KCAKCTVDYTLDVSCKDSDSRVV 117

Query: 412 TSKDLYSSD-HTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
           T  D+   D H+       +P+    AD ++   +   GI IVKL++G  + ++  A KG
Sbjct: 118 THFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATD-GIPIVKLKRGHSINMKLTASKG 176

Query: 571 IG 576
           +G
Sbjct: 177 LG 178

[153][TOP]
>UniRef100_Q4Z7P9 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium berghei
           RepID=Q4Z7P9_PLABE
          Length = 331

 Score =  111 bits (277), Expect = 5e-23
 Identities = 59/166 (35%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +++I+ +  + M+F L +++A++ANALRR+M+SEVPT+AID+V +  N+S  +DEFIAHR
Sbjct: 10  KIEIKSISKNEMEFTLYNSNAALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHR 69

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           +GLIP+ S       F   C   +    C  C+V++ + VKC   + ++V+  D+ + DH
Sbjct: 70  IGLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKINVSHYDIEALDH 126

Query: 442 TV-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
              +P+     + ++        I IV L K Q + ++  A KGIG
Sbjct: 127 EPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKLTATKGIG 172

[154][TOP]
>UniRef100_Q9AW23 DNA-directed RNA polymerase II n=1 Tax=Guillardia theta
           RepID=Q9AW23_GUITH
          Length = 299

 Score =  110 bits (276), Expect = 6e-23
 Identities = 63/164 (38%), Positives = 94/164 (57%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +K+ ++ D  +K    +     AN++RR+M++E+PT+AID V IE N+S   DEFIAHRL
Sbjct: 1   MKVEKISDFEIKINFNNFPIVYANSIRRIMMNEIPTLAIDKVYIEKNTSSFKDEFIAHRL 60

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GLIP+ SE A  +++SR+CD    + +CE CS+ F L V          +S    S+   
Sbjct: 61  GLIPIFSENADLIKYSRECDC---ENECEKCSILFTLDVHANETEKTITSSMVKCSTACY 117

Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            +   F   +S +    D   III KL  GQ ++L+A  +KGIG
Sbjct: 118 PLKTFFIINNSGNSRNYDDYAIIIAKLNPGQNIKLKAYVKKGIG 161

[155][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
           RepID=CNJC_TETTH
          Length = 310

 Score =  110 bits (275), Expect = 8e-23
 Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++ +  L++   +F L + D S+AN+LRR++++E+ T+AI  V++  N+S L DE+IAHR
Sbjct: 5   KLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHR 64

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDL-YSSD 438
           LGLIPL S +     +  +C+     G+C+ C++ F LRV   T+  L+VTS DL    D
Sbjct: 65  LGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQD 121

Query: 439 HT----VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           HT    V P+   +            GI I+KL KGQ++     A+KGIG
Sbjct: 122 HTDEDAVRPIKVYSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIG 171

[156][TOP]
>UniRef100_Q7RLX3 Conjugation stage-specific protein, putative n=1 Tax=Plasmodium
           yoelii yoelii RepID=Q7RLX3_PLAYO
          Length = 335

 Score =  110 bits (274), Expect = 1e-22
 Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           ++I+ +  + M+F L ++++++ANALRR+M+SEVPT+AID+V +  N+S  +DEFIAHR+
Sbjct: 15  IEIKSISKNEMEFTLYNSNSALANALRRIMLSEVPTLAIDIVNVYENTSPFHDEFIAHRI 74

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GLIP+ S       F   C   +    C  C+V++ + VKC   + +DV+  D+ + DH 
Sbjct: 75  GLIPIDSRNIKNYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 131

Query: 445 V-VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             +P+     + ++        I I+ L K Q + ++  A KGIG
Sbjct: 132 PNIPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKLTATKGIG 176

[157][TOP]
>UniRef100_Q4XR41 DNA-directed RNA polymerase II, putative n=1 Tax=Plasmodium
           chabaudi RepID=Q4XR41_PLACH
          Length = 331

 Score =  109 bits (273), Expect = 1e-22
 Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 5/169 (2%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           ++I+ +  + M F L +++ ++ANALRR+M+SEVPT+A+D+V +  N+S  +DEFIAHR+
Sbjct: 11  IEIKSISKNEMSFILYNSNTALANALRRIMLSEVPTLAVDIVNVYENTSPFHDEFIAHRI 70

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH- 441
           GLIP+ S       F   C   +    C  C+V++ + VKC   + +DV+  D+ + DH 
Sbjct: 71  GLIPIDSRNIKSYEFRERCKCKE---TCSRCTVQYIIEVKCNNANKIDVSHYDIEALDHE 127

Query: 442 ----TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
                 +P D    +   ++T+    I IV L K Q L ++  A KGIG
Sbjct: 128 PNIPMPIPNDNKHNNIDKMDTA----IPIVTLSKNQTLHMKLTATKGIG 172

[158][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
           Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
          Length = 363

 Score =  106 bits (265), Expect = 1e-21
 Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 7/171 (4%)
 Frame = +1

Query: 82  RVKIRELKD------DYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
           +VKI + K       + ++F+L + D S AN LRRVM++EVP + I+ V I  N+SVL D
Sbjct: 28  KVKILDCKKHEHSAGETLEFQLAEVDNSFANGLRRVMLAEVPVLGIESVTIIQNTSVLPD 87

Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSK 420
           E IAHR+GL+PL S +A  M+++RDC  C G G C  C +   L+V C ++  +L V   
Sbjct: 88  EMIAHRIGLVPLYSMKARRMQYARDC-LCGGSG-CGECQINGELKVSCPSNKHSLQVFMD 145

Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
            L   D  V PV           +S+  G+ ++ L + QEL LR + RK I
Sbjct: 146 SLKIDDEEVYPV-----------SSEEHGVWLLTLGRSQELNLRVVIRKNI 185

[159][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
           Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
          Length = 337

 Score =  104 bits (260), Expect = 4e-21
 Identities = 62/152 (40%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG 300
           F+L + D S AN LRRV+++EVP + ++ V I  N+SVL DE IAHR+GL+PL S+RA  
Sbjct: 21  FKLNEVDNSFANGLRRVLLAEVPVLGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRAKQ 80

Query: 301 MRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDLYSSDHTVVPVDFSAADS 477
           M+F  DC  C G G C  C +   L+V+C ++  +L V +  L   D  V PV       
Sbjct: 81  MQFFHDC-LCGGTG-CIECQITGELKVRCPSNQHSLQVFADSLKIDDEGVYPV------- 131

Query: 478 SSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
               +S+ RG+ ++ L + QE+ LR + RK I
Sbjct: 132 ----SSEERGVWLLTLGRSQEINLRVLIRKSI 159

[160][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
           n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
          Length = 322

 Score =  104 bits (260), Expect = 4e-21
 Identities = 68/179 (37%), Positives = 96/179 (53%), Gaps = 13/179 (7%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P++ +     + ++F L +     ANALRRVMI+EVPT+A+D VE   N+S L DE+IAH
Sbjct: 13  PQIFVTAKTSNSIEFRLMNVSRHFANALRRVMIAEVPTLAVDTVEFFQNTSPLPDEYIAH 72

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGD--GQCEYCSVEFHLRVKC--MTDSTLDVTSKDL 426
           RL LIP  SE A    +   C+ CDG   G C  C+V + +   C   +DS ++VTS DL
Sbjct: 73  RLALIPFVSEDADKFFYHSQCN-CDGSQLGYCPNCTVIYTIDAHCEPESDSVVEVTSNDL 131

Query: 427 -------YSSDHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
                  ++   T+  +      ++     D   + + I KL  GQ LRL A  RKGIG
Sbjct: 132 KLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVTITKLAPGQTLRLAAYIRKGIG 190

[161][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
           strain Friedlin RepID=Q4FY45_LEIMA
          Length = 337

 Score =  104 bits (259), Expect = 6e-21
 Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           VK      + + F+L + D+S ANALRRVM++E+PT+AI+ V I  N+SVL DE IAHRL
Sbjct: 9   VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSSD 438
           GL+PL SE+A  + F +DC  C G G C  C +   L+V+C  +  S        L   D
Sbjct: 69  GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDD 126

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V PV           +++  GI +V L + Q L L  + RK I
Sbjct: 127 AEVYPV-----------SAEEHGIWLVTLGRSQVLDLHVVIRKNI 160

[162][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
           infantum RepID=A4I451_LEIIN
          Length = 337

 Score =  104 bits (259), Expect = 6e-21
 Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 2/165 (1%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           VK      + + F+L + D+S ANALRRVM++E+PT+AI+ V I  N+SVL DE IAHRL
Sbjct: 9   VKNEHAAGETLTFQLSEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRL 68

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSSD 438
           GL+PL SE+A  + F +DC  C G G C  C +   L+V+C  +  S        L   D
Sbjct: 69  GLVPLFSEKAKRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQHSKQVFIGDSLQIDD 126

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
             V PV           +++  GI +V L + Q L L  + RK I
Sbjct: 127 AEVYPV-----------SAEEHGIWLVTLGRSQVLDLHVVIRKNI 160

[163][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
           braziliensis RepID=A4HH22_LEIBR
          Length = 337

 Score =  104 bits (259), Expect = 6e-21
 Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
 Frame = +1

Query: 115 MKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 294
           + F+L + D+S ANALRRVM++E+PT+AI+ V I  N+SVL DE IAHRLGL+PL SE+A
Sbjct: 19  LTFQLNEVDSSFANALRRVMLAEIPTLAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEKA 78

Query: 295 MGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSAAD 474
             + F +DC  C G G C  C +   L+V+C  +      SK ++  D   +       D
Sbjct: 79  KRLNFPQDC-GCGGSG-CPDCQITGSLKVQCPPNQ----HSKQVFIGDSLQI-------D 125

Query: 475 SSSV--ETSDGRGIIIVKLRKGQELRLRAIARKGI 573
           S+ V   +++  GI +V L + Q L L  + RK I
Sbjct: 126 SAEVYPVSAEEHGIWLVTLGRSQVLDLNVLIRKNI 160

[164][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
           RepID=A7AWB4_BABBO
          Length = 382

 Score =  103 bits (258), Expect = 7e-21
 Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 46/221 (20%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           ME +S    P + I  L    M F L + D + AN+LRR+M+SE+P++AI++V +  N+S
Sbjct: 1   MEWSSRQLRPSIDIVSLTSTKMIFILLNADVATANSLRRIMLSEIPSLAIEVVTVLENTS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           VL+DE+IAHRLGL+P+ S  A    +   C   D   +C  C+VE+ L VKCM D T  V
Sbjct: 61  VLHDEYIAHRLGLLPIESSSARNFEYRDKCTCSD---KCSRCTVEYSLDVKCM-DDTRVV 116

Query: 412 TSKDL--------YSSDHTVVPVDFSAAD-----------------------SSSVETSD 498
           T  D+          + +  +PV   +AD                       + +V+  D
Sbjct: 117 THYDINLDSWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSGNATARNVQNPD 176

Query: 499 G---------------RGIIIVKLRKGQELRLRAIARKGIG 576
           G                GI IVKL++GQ L L+  A KG+G
Sbjct: 177 GPHTGAVDRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLG 217

[165][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
           RepID=Q5CJZ9_CRYHO
          Length = 344

 Score =  103 bits (257), Expect = 1e-20
 Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +K+ ELK DY+ F++   DAS+ANALRR+++ E+PTVAI+ V+I  N+ V+ DE +AHRL
Sbjct: 57  IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS---TLDVTSKDLYSS 435
           GLIP+  +       + D D  + +  C      F L VKC  D       +TSK +YS 
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170

Query: 436 DHTVVPVDFS-----AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           D   +P+  +           V T D   I+I KLR GQ +       K IG
Sbjct: 171 DLVWIPLSDNQRKKFGKSPPKVVTDD---ILITKLRPGQSIEAILYCEKNIG 219

[166][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
           II RepID=Q5CPY6_CRYPV
          Length = 344

 Score =  103 bits (256), Expect = 1e-20
 Identities = 65/172 (37%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +K+ ELK DY+ F++   DAS+ANALRR+++ E+PTVAI+ V+I  N+ V+ DE +AHRL
Sbjct: 57  IKVNELKSDYINFDISGIDASIANALRRILLVEIPTVAIETVQIYQNNGVIQDEVLAHRL 116

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS---TLDVTSKDLYSS 435
           GLIP+  +       + D D  + +  C      F L VKC  D       +TSK +YS 
Sbjct: 117 GLIPMLIDPNTIEFRNEDEDLNEKNSVC------FKLNVKCTKDDINHEKGITSKAIYSK 170

Query: 436 DHTVVPVDFS-----AADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           D   +P+  +           V T D   I+I KLR GQ +       K IG
Sbjct: 171 DLVWIPLSDNQRKKFGKTPPKVVTDD---ILITKLRPGQSIEAILYCEKNIG 219

[167][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
           Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
          Length = 351

 Score =  100 bits (250), Expect = 6e-20
 Identities = 69/169 (40%), Positives = 91/169 (53%), Gaps = 5/169 (2%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +KI EL  DY+ F+L   DA+VANALRR+++ EVPTVAI+ V+I  NS V+ DE +AHRL
Sbjct: 66  IKINELTSDYINFDLIGVDAAVANALRRILLVEVPTVAIETVQIYQNSGVIQDEVLAHRL 125

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GLIP   +  +    + D D  + +  C    VE +   K   D    +TSK +YS D  
Sbjct: 126 GLIPFNIDLDLIDFRAEDQDLNEKNSVCFKLCVECN---KYDIDDKNGITSKAIYSKDLI 182

Query: 445 VVPVDFSAAD-----SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            VP+  S          SV   D   I+I KLR GQ +       KGIG
Sbjct: 183 WVPMSESQKQIFEKKPPSVVYPD---ILITKLRPGQVIEAILYCEKGIG 228

[168][TOP]
>UniRef100_B3NAC7 GG23887 n=1 Tax=Drosophila erecta RepID=B3NAC7_DROER
          Length = 117

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSERAM-GMRFSRD 318
           F+AHR+GLIPL S+  +  ++++RD
Sbjct: 63  FLAHRIGLIPLISDDVVERLQYTRD 87

[169][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
          Length = 308

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 67/165 (40%), Positives = 90/165 (54%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R++I EL D+  KF   + D S+ANA+RRVMI+EVP +AI  V+I  N+S L+DEF+A R
Sbjct: 13  RIEILELSDEKCKFSF-EGDLSIANAIRRVMIAEVPVMAIHFVDIIENTSPLSDEFLAQR 71

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           LGLIPL S  A    +  + DA   D Q     V F LR K + D+ L++TS+ L     
Sbjct: 72  LGLIPLVSYAADSKMYDWEADADSIDDQ--KTKVVFTLRQKNLNDAPLEITSQHLEPEFG 129

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            V  +        S       GI I +L K Q + +R  A KG G
Sbjct: 130 QVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVRCHALKGFG 174

[170][TOP]
>UniRef100_Q8IP63 RNA polymerase II 33kD subunit, isoform B n=1 Tax=Drosophila
           melanogaster RepID=Q8IP63_DROME
          Length = 117

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 47/74 (63%), Positives = 60/74 (81%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSE 288
           F+AHR+GLIPL S+
Sbjct: 63  FLAHRIGLIPLISD 76

[171][TOP]
>UniRef100_B3MN19 GF19666 n=1 Tax=Drosophila ananassae RepID=B3MN19_DROAN
          Length = 125

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 47/74 (63%), Positives = 60/74 (81%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL DD +KF L DT+ SVAN+LRRV I+E PT+AID V++E NS+VL+DE
Sbjct: 3   YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDE 62

Query: 247 FIAHRLGLIPLTSE 288
           F+AHR+GLIPL S+
Sbjct: 63  FLAHRIGLIPLISD 76

[172][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
          Length = 375

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 18/183 (9%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV+  +L      F L   DAS+ANALRR++ISE+PT+AI+ V I  N+SV+ DE +AHR
Sbjct: 54  RVRYHQLSPSESSFSLIGVDASIANALRRILISEIPTLAIETVYIYNNTSVIQDEVLAHR 113

Query: 262 LGLIPLTSERAMGMR-----FSRDCDACDGDGQCEYCSVEFHLRVKCM---------TDS 399
           LGL+P T+ +A G+R       ++ D   GD   +Y +V+  LR++C           DS
Sbjct: 114 LGLVPFTANKA-GLRDFLRWRKKNPDGTPGD-IFDYNTVQLRLRIECTRNPDAAPGEIDS 171

Query: 400 TLDVTSKDLYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
           T    +  +++SD   VP    +++     ++V  ++   I++ KLR GQ L +     K
Sbjct: 172 TKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTN-PDILLAKLRPGQVLEMDMHMHK 230

Query: 568 GIG 576
           GIG
Sbjct: 231 GIG 233

[173][TOP]
>UniRef100_Q12ZR3 DNA-directed RNA polymerase subunit D n=1 Tax=Methanococcoides
           burtonii DSM 6242 RepID=Q12ZR3_METBU
          Length = 267

 Score = 95.9 bits (237), Expect = 2e-18
 Identities = 68/164 (41%), Positives = 88/164 (53%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           + I EL D   KF L +T A+ AN +RR M+++VPT+AID V I  N+SVL DE +A RL
Sbjct: 3   IDILELSDRSAKFILSNTTAAFANGVRRAMLADVPTLAIDDVNIYNNTSVLYDEQLALRL 62

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GLIPLT+  +      +D   CDG G C  C+V   L V+        V S D+ SSD  
Sbjct: 63  GLIPLTT--SFDDFVPQDKCTCDGAG-CPACTVSLTLSVETDESGQTIVHSGDIVSSDPN 119

Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           V P D              + I I+ LR GQ++ L AIA  G G
Sbjct: 120 VQPAD--------------KNIPIIDLRVGQKVVLEAIAHMGYG 149

[174][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
           RepID=B3S4F3_TRIAD
          Length = 349

 Score = 95.1 bits (235), Expect = 3e-18
 Identities = 60/181 (33%), Positives = 104/181 (57%), Gaps = 10/181 (5%)
 Frame = +1

Query: 64  SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
           S+ +  +++I ++ ++ M+F++   DAS+ANA RR+M+SEVP +AI+ V I  N+S++ D
Sbjct: 42  SFRKNFKIEIIKVDNEEMEFDMIGIDASIANAYRRIMLSEVPAMAIEKVVIHNNTSIIQD 101

Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTL--DVTS 417
           E +AHRLGLIP+ ++  +   F+       GD      S+ F L++KC+ + +   D T 
Sbjct: 102 EVLAHRLGLIPIAADPKLFDNFN------PGDTPTNKNSITFTLQIKCIRNRSAHSDATD 155

Query: 418 -KDLYSSDHTV---VPVDFSAADSSSVETSDGR----GIIIVKLRKGQELRLRAIARKGI 573
            ++LY +       + + ++    +++   D R     I+I KLR GQE+ L  I  KG 
Sbjct: 156 PEELYINSKVTTKDLKLKYNEDQDNAIPNKDIRPVHEDILIAKLRPGQEIDLEMICVKGT 215

Query: 574 G 576
           G
Sbjct: 216 G 216

[175][TOP]
>UniRef100_Q5KG24 RNA polymerase II subunit 3, putative n=1 Tax=Filobasidiella
           neoformans RepID=Q5KG24_CRYNE
          Length = 377

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           PR+ +R L +    F L   + + AN+LRRVM+++VPT+AID V    N++ L DE IAH
Sbjct: 25  PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84

Query: 259 RLGLIPLTSER-AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S   + G+R++RDCD  +G   C YC V   L+V   T S  D       +S
Sbjct: 85  RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV---TFSGNDGEQFMRVTS 138

Query: 436 DHTVV---------------PVDFSAADSSSVETSD-------GRG------IIIVKLRK 531
           D   V               P + S  D   +   D       G+G      I+I K+ K
Sbjct: 139 DMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGK 198

Query: 532 GQELRLRAIARKGI 573
           GQE+ +   A KGI
Sbjct: 199 GQEIDVLCKAYKGI 212

[176][TOP]
>UniRef100_Q55RL9 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
           RepID=Q55RL9_CRYNE
          Length = 377

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 71/194 (36%), Positives = 97/194 (50%), Gaps = 29/194 (14%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           PR+ +R L +    F L   + + AN+LRRVM+++VPT+AID V    N++ L DE IAH
Sbjct: 25  PRLLLRNLNETDATFHLSGVELAYANSLRRVMMADVPTIAIDQVLFMQNTTPLADEMIAH 84

Query: 259 RLGLIPLTSER-AMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           RLGLIPL S   + G+R++RDCD  +G   C YC V   L+V   T S  D       +S
Sbjct: 85  RLGLIPLISRNVSKGLRYTRDCDCDEG---CYYCMVTLRLKV---TFSGNDGEQFMRVTS 138

Query: 436 DHTVV---------------PVDFSAADSSSVETSD-------GRG------IIIVKLRK 531
           D   V               P + S  D   +   D       G+G      I+I K+ K
Sbjct: 139 DMLEVVPSPGGPPPPNPYGPPPELSEEDRIIINNRDPEMGQPIGKGNPTVPPILIAKMGK 198

Query: 532 GQELRLRAIARKGI 573
           GQE+ +   A KGI
Sbjct: 199 GQEIDVLCKAYKGI 212

[177][TOP]
>UniRef100_Q46GD0 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanosarcina
           barkeri str. Fusaro RepID=Q46GD0_METBF
          Length = 266

 Score = 94.0 bits (232), Expect = 8e-18
 Identities = 65/164 (39%), Positives = 85/164 (51%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           V I EL D   KF L     S AN +RR MI++VPT+AI+ V +  N+SVL DE +A RL
Sbjct: 5   VDILELSDRSAKFVLSKVSTSFANGIRRAMIADVPTLAIEYVNLYENTSVLYDEQLALRL 64

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
            LIPL ++    +    +CD C G+G C  C V   L      +    V S+DL SSD  
Sbjct: 65  SLIPLVTDVETYVP-QAECDVCGGEG-CPACEVSLTL----SAEGPCTVYSRDLISSDPK 118

Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           + P D                I IV+L+KGQ+L L A+A  G G
Sbjct: 119 IQPAD--------------PNIPIVELKKGQKLVLEALAHMGYG 148

[178][TOP]
>UniRef100_Q2NFZ6 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosphaera
           stadtmanae DSM 3091 RepID=RPOD_METST
          Length = 270

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 2/166 (1%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           ++IRE  D+   F +   D +  N +RR+ + E+PT+AI+ V I  N + + DE +AHRL
Sbjct: 3   IEIREKDDERAVFVVEGVDDTFINTIRRICLVEIPTLAIEDVNIYKNDAKMFDEVLAHRL 62

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM--TDSTLDVTSKDLYSSD 438
           GLIP+ ++    +  S     CD +  C++C V F L+ KC    DS + V SKDL S D
Sbjct: 63  GLIPIVTDLDSYVMPSE----CDCESGCQHCRVSFLLKEKCEEGNDSKI-VYSKDLKSDD 117

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             V PV  +              I IV+LR+G+E+ L AIA  G+G
Sbjct: 118 PAVKPVYDT--------------IPIVRLREGEEVELEAIAELGLG 149

[179][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
           kamchatkensis 1221n RepID=B8D6F8_DESK1
          Length = 280

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 67/166 (40%), Positives = 85/166 (51%), Gaps = 2/166 (1%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           + I E     +K  LRD    + N+LRR ++SEVPT+A+D V I  NSSV  DE+I+HRL
Sbjct: 3   IDILEKTPSTIKLYLRDVPLHLVNSLRRTILSEVPTMAVDYVAITENSSVFYDEYISHRL 62

Query: 265 GLIPLTSERAMG-MRFSRDC-DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           GLIPL S  A+   +   +C +A D     + C V   L         L V S+DL SSD
Sbjct: 63  GLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVTLRLEASGPEKDVLTVYSRDLVSSD 122

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             VVPV                 I I+KL K Q +RL A AR G G
Sbjct: 123 PDVVPVYGE--------------IPILKLIKDQSIRLEAYARLGRG 154

[180][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
           RepID=UPI000180C3EB
          Length = 345

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 65/173 (37%), Positives = 100/173 (57%), Gaps = 9/173 (5%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           + + EL  D M+F++   DA++ANA RR++I+EVPT+AI+ V I  N++V+ DE +AHRL
Sbjct: 48  INVIELGPDSMQFDMLGVDAAIANAFRRILIAEVPTMAIEKVYIYNNTTVIQDEVLAHRL 107

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD-------STLDVTSK- 420
           GLIPLT++  +      D    D DG  E  ++EF L +KC  +       + LDV  K 
Sbjct: 108 GLIPLTADAKLFEYRQGD----DADGTPE-DTLEFELNIKCTKNLSAPKDTTDLDVLYKH 162

Query: 421 -DLYSSDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             +YS D   +P+  +  D  +V+      I++ KLR G  L ++  A KG+G
Sbjct: 163 HKVYSKDIKWIPLG-NQKDLLTVKPVYD-DILVAKLRPGHILDVKLHAVKGVG 213

[181][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
           containing protein n=1 Tax=Babesia bovis
           RepID=A7AQ72_BABBO
          Length = 319

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 12/177 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKF----------ELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           R  + E+KD  +KF          E+   + ++ANA+RR++++EVPT+AI+ V I  N+ 
Sbjct: 25  RTVLDEVKDVKIKFLKNTRYHAIAEIEGLNVAIANAIRRILLAEVPTLAIESVHIYQNTG 84

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
           V+ DE +AHRLGL+P      + + +  + D  D +  C      FHL+V+C  +S    
Sbjct: 85  VIQDEVLAHRLGLVPFDCNPDL-IPYRDNEDLSDKNSVC------FHLKVECKKESLAGR 137

Query: 412 TSKDLYSSDHTVVPVDFSAAD--SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           T+  +Y+ D   VP+    A+    +      + I++ KL  GQE+ L+A   KGIG
Sbjct: 138 TNLPVYAGDMKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLKAYLEKGIG 194

[182][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
           mordax RepID=C1BKA8_OSMMO
          Length = 351

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 58/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R+ I E+ +  M+F++   DA++ANA RR+M++EVPT+A++ V I  N+S++ DE +AHR
Sbjct: 51  RIDIVEMDETTMEFDMVGIDAAIANAFRRIMLAEVPTMAVEKVYIYNNTSIIQDEILAHR 110

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
           LGLIP+ ++  +    +   +  + +G  E  +++  L++KC  +      S D      
Sbjct: 111 LGLIPIKADPRLFEYRNIGEEGGEEEG-TEIDTIQLQLKIKCTRNPRAPKDSSDPRELYL 169

Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
              +YS D   VP+   A   +        G I+I +LR GQEL +     KGIG
Sbjct: 170 NHMVYSKDMKWVPIGNQADVFADANIGPVHGDILIAQLRPGQELDVVMSCVKGIG 224

[183][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
           Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
          Length = 378

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
 Frame = +1

Query: 118 KFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 297
           +F L   DAS+ANA RR+MI+++PT+AI+ + +  N+SV+ DE + HRLGLIP T  +  
Sbjct: 76  QFSLIGVDASIANAFRRIMIADIPTLAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEG 135

Query: 298 GMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDHTVV 450
              F +      G+  C+Y +VE  L+VKC  + +    SKD         +Y+ D   V
Sbjct: 136 LHNFLKWYK--KGETPCDYNTVELELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFV 193

Query: 451 PVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           P       FS  ++      D   I++ K+R GQE+ L     KG+G
Sbjct: 194 PKGRQAKYFSGENAIRPTNPD---ILVAKMRPGQEIDLTMHMHKGVG 237

[184][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E11AB
          Length = 347

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
 Frame = +1

Query: 61  ASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLN 240
           A + +  ++ +  L +  M+F++   DA++ NA RR++++EVPT+AI+ V I  N+S++ 
Sbjct: 40  AKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQ 99

Query: 241 DEFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
           DE +AHRLGLIP+ ++ R    R S D +A + +G  E  +++  L++ C  +      S
Sbjct: 100 DEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDS 157

Query: 418 KD---------LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARK 567
            D         +YS D   VP+   A   ++       G I+I +LR GQEL +     K
Sbjct: 158 SDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIK 217

Query: 568 GIG 576
           GIG
Sbjct: 218 GIG 220

[185][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
           RepID=UPI00016E11AA
          Length = 351

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
 Frame = +1

Query: 61  ASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLN 240
           A + +  ++ +  L +  M+F++   DA++ NA RR++++EVPT+AI+ V I  N+S++ 
Sbjct: 44  AKFKKNFQIDLMHLDESQMEFDMMGVDAAITNAFRRILLAEVPTMAIEKVFIYNNTSIVQ 103

Query: 241 DEFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS 417
           DE +AHRLGLIP+ ++ R    R S D +A + +G  E  +++  L++ C  +      S
Sbjct: 104 DEVLAHRLGLIPIKADPRLFEYRNSGD-EATENEGS-EIDTIQLQLKISCSRNPASSKDS 161

Query: 418 KD---------LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARK 567
            D         +YS D   VP+   A   ++       G I+I +LR GQEL +     K
Sbjct: 162 SDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQLRPGQELDIIMHCIK 221

Query: 568 GIG 576
           GIG
Sbjct: 222 GIG 224

[186][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Pyrenophora tritici-repentis Pt-1C-BFP
           RepID=B2WCA1_PYRTR
          Length = 376

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 21/174 (12%)
 Frame = +1

Query: 118 KFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 297
           +F L   D SVANA RR+++SE+PT+AI+ V I  N+S++ DE +AHRLGLIPL  +RA 
Sbjct: 63  QFSLTGIDTSVANAFRRILLSEIPTLAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRAT 122

Query: 298 GMR---FSRDCDACDGD-GQCEYCSVEFHLRVKCM-------------TDSTLDVTSKDL 426
             R   +++  D  +G  G     +V   L+ KC              TD        ++
Sbjct: 123 LRRMKWYAKPTDEDEGSGGPTSENTVALTLKTKCTWQPGGVARAVAGETDPDRLYVGHNV 182

Query: 427 YSSDHTVVPVDFSAADSSSVE----TSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           Y+ D    P    A + S  E     S    I+I K+R GQEL +R  A KGIG
Sbjct: 183 YAKDMRFEPNGNQAENLSEAEGKHIRSTNPDILICKMRPGQELEIRMHAIKGIG 236

[187][TOP]
>UniRef100_Q8PV16 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosarcina mazei
           RepID=RPOD_METMA
          Length = 266

 Score = 90.9 bits (224), Expect = 6e-17
 Identities = 65/164 (39%), Positives = 85/164 (51%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           V I EL D   KF L     + AN +RR MI++VPT+AI+ V +  N+SVL DE +A RL
Sbjct: 5   VDILELSDRSAKFVLSRVSMAFANGVRRAMIADVPTLAIEYVNLYDNTSVLYDEQLALRL 64

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
            LIPL ++    M    +C+ C G+G C  C V   L      +    V S+DL SSD  
Sbjct: 65  SLIPLVTDIETYMP-QAECEVCGGEG-CPACEVSLTL----SAEGPGTVYSRDLISSDPK 118

Query: 445 VVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           + P D                I IV+L+KGQ+L L AIA  G G
Sbjct: 119 IQPAD--------------PNIPIVELKKGQKLVLEAIAHMGYG 148

[188][TOP]
>UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
           lucius RepID=C1BYW4_ESOLU
          Length = 263

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R+ + ++ +  M+F++   DAS+ANA RR++++EVPT+A++ V I  N+S++ DE +A R
Sbjct: 51  RIDVVQMDETCMEFDMVGIDASIANAFRRILLAEVPTMAVEKVFIYNNTSIIQDEVLAQR 110

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
           LGLIP+ ++     R     +A D +G  E  +++  L++KC  +      S D      
Sbjct: 111 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNHQATKDSADPQELYL 165

Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
              +YS D T VP+   A   +        G I++ KLR GQEL +     KGIG
Sbjct: 166 NHMVYSKDMTWVPIGNQADVVADANIGPVHGDILLAKLRPGQELDIVMHCVKGIG 220

[189][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Schizosaccharomyces japonicus yFS275
           RepID=B6JXY4_SCHJY
          Length = 349

 Score = 90.5 bits (223), Expect = 8e-17
 Identities = 63/174 (36%), Positives = 91/174 (52%), Gaps = 10/174 (5%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +KI  L D  M F++   DAS+ NA RR++I+E+PT+AI+ V I  N+S+L DE ++HRL
Sbjct: 48  IKITSLDDLNMTFDISGIDASIVNAFRRILIAEIPTLAIEFVYIINNTSILQDEVLSHRL 107

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC---------MTDSTLDVTS 417
           GLIPL ++  M   F R     +     +Y +V F L VKC          TD      +
Sbjct: 108 GLIPLKADPDMFKWFVRPGPGMEAT-HTDYDTVVFSLNVKCDFNKEAAPGETDPKKLYLN 166

Query: 418 KDLYSSDHTVVPVDFSAAD-SSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            ++ S +    P    A   + +  T     I++ KLR GQE+ L A A  GIG
Sbjct: 167 SEVLSGELVWKPQGRQAERFADNPLTVVNPNIVVAKLRPGQEIDLEAHAILGIG 220

[190][TOP]
>UniRef100_C8S812 RNA polymerase insert n=1 Tax=Ferroglobus placidus DSM 10642
           RepID=C8S812_FERPL
          Length = 262

 Score = 90.1 bits (222), Expect = 1e-16
 Identities = 65/165 (39%), Positives = 88/165 (53%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V+I   ++  +KF L+D+D   ANA RR M S VPT+A+D V+  +N+S+L DE IAHR
Sbjct: 2   KVEILSEEELKIKFILKDSDYVFANAWRRAMKSLVPTLAVDYVDFYLNTSLLYDEIIAHR 61

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           +GLIPL ++      F   C  C+G+G C  C V   L V    +    V S DL   D 
Sbjct: 62  IGLIPLKTDLER-YNFQDKC-VCEGEG-CPNCQVSLRLNV----EGPKTVYSGDLIPDDP 114

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            V PV                 I IV+L +GQ+L L A+AR G G
Sbjct: 115 EVKPV--------------YDNIPIVELYEGQQLMLEAVARLGTG 145

[191][TOP]
>UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI00019857F6
          Length = 372

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 68/190 (35%), Positives = 99/190 (52%), Gaps = 25/190 (13%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV++  L +D M+F++   D S+ANA RR++I+E+PT+AI+ V I  N+S++ DE +AHR
Sbjct: 66  RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
           LGLIP+ ++  +   F    D  + D   E  ++ F+L V+C      L V S +L    
Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTVKSNELKWLP 179

Query: 427 -----------YSSDHTVVP---VDFSAADSSSVETSDGR------GIIIVKLRKGQELR 546
                       +S  T  P     FS +  S  E SD         III KL  GQE+ 
Sbjct: 180 HGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIE 239

Query: 547 LRAIARKGIG 576
           L A A KG+G
Sbjct: 240 LEAHAVKGMG 249

[192][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Paracoccidioides brasiliensis Pb03
           RepID=C0SF50_PARBP
          Length = 345

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294
           F L   DAS+ANA RR++I+E+P++AI+ V I  N+SV+ DE +AHRLGL+PLT   E  
Sbjct: 31  FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 90

Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
             +R+ R   + D   G    +Y ++  HL VKC  +       +D         +Y+ D
Sbjct: 91  NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKD 150

Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            T  PV      F   D     T+    I++ KLR GQ++ +     KGIG
Sbjct: 151 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 199

[193][TOP]
>UniRef100_A2SSV7 DNA-directed RNA polymerase, subunit D n=1 Tax=Methanocorpusculum
           labreanum Z RepID=A2SSV7_METLZ
          Length = 275

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 63/159 (39%), Positives = 84/159 (52%)
 Frame = +1

Query: 100 LKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPL 279
           L D   +F +     + ANALRR MI EVPT+AI+ + I  N+SVL DE +AHRLGLIP+
Sbjct: 8   LDDSVARFTIHGATPAFANALRRSMIGEVPTLAIEDIRIYDNTSVLFDEMLAHRLGLIPI 67

Query: 280 TSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVD 459
            ++  +     R   +C G+G C +C+V F L V    +    VTS DL S D  VVPV 
Sbjct: 68  KTD--LSQYVPRSECSCGGEG-CPHCTVMFTLSV----EGPKMVTSGDLISMDENVVPVH 120

Query: 460 FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
                           I IVKL + Q++ L A+A    G
Sbjct: 121 --------------NNIPIVKLWENQKVVLEAVAEVNYG 145

[194][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
           purpuratus RepID=UPI0000E468FB
          Length = 335

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R+ +  L    ++F++   D +VANA RR++++EVPT+AI+ V I  N+S++ DE +AHR
Sbjct: 35  RIDVISLTHSELEFDMVGVDPAVANAFRRILLAEVPTMAIEKVSIFNNTSIIQDEILAHR 94

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM--TDSTLDVTSKDLYSS 435
           LGLIP+ ++  +   +  + D   G G+    ++EF L+VKC    +++ D T  D    
Sbjct: 95  LGLIPIKADPRI-FEYREEGDE-TGTGE---DTIEFQLKVKCTKNPNASKDATDPDELYK 149

Query: 436 DHTVVPVDFSAADSSSVETSDG--------RGIIIVKLRKGQELRLRAIARKGIG 576
           +  V    F      + E + G        + I+I KLR GQE+ L+    KGIG
Sbjct: 150 NAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIAKLRPGQEIDLKMHCVKGIG 204

[195][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
          Length = 347

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R+ I +++DD ++F++   DAS+ANA RR+++SEVPTVA++ V +  N+S++ DE +AHR
Sbjct: 50  RIDIVKMEDDILEFDMVGIDASIANAFRRILLSEVPTVAVEKVYVYNNTSIIQDEILAHR 109

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYSS 435
           LGLIP+ ++  +    S D    D +G  E  +++F L VKC  +  ++ D +  +    
Sbjct: 110 LGLIPIRADPRLFEYRSAD----DAEG-TEIDTLQFELNVKCTRNPRASKDCSDPNELYL 164

Query: 436 DHTVVPVDFSAADSSS-----VETSDGR----GIIIVKLRKGQELRLRAIARKGIG 576
           +H V           +      ET   R     I+I +LR GQE+ +     KGIG
Sbjct: 165 NHKVYTGHMKWLPQGNQVDLFPETDPPRPVHKDILIAQLRPGQEINVIMHCVKGIG 220

[196][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
           quinquefasciatus RepID=B0W725_CULQU
          Length = 335

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 57/181 (31%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           + R  ++ +   +++ ++F++     ++ANA RR+M+SEVP++AI+ V I  N+S++ DE
Sbjct: 40  FKRQLQIVVVRYEENELEFDMIGVSPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDE 99

Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVTS 417
            +AHRLGLIPL ++  +    + + DA +        ++EF L+VKC     DST +VT+
Sbjct: 100 VLAHRLGLIPLKADPRLFEYKTNEGDAANAQD-----TLEFELKVKCTKKNKDST-EVTN 153

Query: 418 KDLYSSDHTV-------VPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGI 573
            D    +H++       VPV   A+     +       I+I ++R G E  ++  A KG+
Sbjct: 154 NDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPIDDDILISRMRPGHEFDIKLFAVKGV 213

Query: 574 G 576
           G
Sbjct: 214 G 214

[197][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Paracoccidioides brasiliensis Pb18
           RepID=C1GK69_PARBD
          Length = 380

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 61/171 (35%), Positives = 89/171 (52%), Gaps = 19/171 (11%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294
           F L   DAS+ANA RR++ISE+P++AI+ V I  N+SV+ DE +AHRLGL+PLT   E  
Sbjct: 66  FSLIGVDASIANAFRRILISEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125

Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
             +R+ R   + D   G    +Y ++  HL V+C  +       +D         +Y+ D
Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKD 185

Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            T  PV      F   D     T+    I++ KLR GQ++ +     KGIG
Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 234

[198][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
           Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
          Length = 346

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 13/178 (7%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV + ++++D ++F++   DA++ANA RR++++EVPT+A++ V +  N+S++ DE +AHR
Sbjct: 50  RVDVVQMEEDSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIMQDEVLAHR 109

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
           LGLIP+T++ R    R   D +  + D      +++F L+VKC  + +    S D     
Sbjct: 110 LGLIPITADPRLFEYRNQGDEEGTEID------TLQFQLKVKCTWNPSAAKDSSDPNQLY 163

Query: 424 ----LYSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
               +Y+   T VP+   A    + +     D   I+I +LR GQEL L     KG+G
Sbjct: 164 LNHKVYTKHMTWVPLGNQADLFPEGAIRPVHD--DILITQLRPGQELDLLMHYVKGVG 219

[199][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
           histolytica HM-1:IMSS RepID=C4M554_ENTHI
          Length = 283

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           ME   Y R P +   E K++ + F +  TD S+ N LRRV+++E PT+AI LV +  NSS
Sbjct: 1   MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
            L DEFIAHRLGLIP+ S +      + D                  L+ +  ++  + V
Sbjct: 61  YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKEENNSNQLVVV 106

Query: 412 TSKDLYS-SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS DL S  D  V PV++          +D   I+I +L   Q + +    +KG G
Sbjct: 107 TSNDLVSIGDKRVAPVNYK---------NDVDPIVITQLGPRQNIHMVCYVKKGTG 153

[200][TOP]
>UniRef100_B1YC30 DNA-directed RNA polymerase subunit D n=1 Tax=Thermoproteus
           neutrophilus V24Sta RepID=RPOD_THENV
          Length = 262

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 65/165 (39%), Positives = 88/165 (53%)
 Frame = +1

Query: 76  MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
           MP VK+ E    ++K  +     S+ N+LRRV+ISE+P +AID V +  N+SV+ DE +A
Sbjct: 1   MPAVKVVERTPLFLKAVVEGAYPSLVNSLRRVIISELPVMAIDTVIVVNNTSVMYDEMLA 60

Query: 256 HRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSS 435
           HRLGLIPLT+     +    DC++  G      C+V F L+V    D  + V S DL S 
Sbjct: 61  HRLGLIPLTTP-LQSLPPIEDCES--GLADPSECTVRFTLQVN--ADGEVTVYSGDLVSE 115

Query: 436 DHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
              VVPV               + I IVKL KGQ + L A A+ G
Sbjct: 116 RPDVVPVH--------------KDIPIVKLVKGQSIVLEAYAKLG 146

[201][TOP]
>UniRef100_O28002 DNA-directed RNA polymerase subunit D n=1 Tax=Archaeoglobus
           fulgidus RepID=RPOD_ARCFU
          Length = 264

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 1/168 (0%)
 Frame = +1

Query: 76  MPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIA 255
           MP ++I E KD  +KF L++   ++AN+ RR M +EVP +A+D V+I +NSS   DE IA
Sbjct: 2   MPEIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIA 61

Query: 256 HRLGLIPLTSERAMGMRFSRDCD-ACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYS 432
           HRL ++P+   +    RF+   + +C G+G C  C + F L V+           K +YS
Sbjct: 62  HRLAMLPI---KTYLDRFNMQSECSCGGEG-CPNCQISFRLNVE---------GPKVVYS 108

Query: 433 SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
                   DF + D   V   D   I +++L +GQ+L L A+AR G G
Sbjct: 109 G-------DFISDDPDVVFAID--NIPVLELFEGQQLMLEAVARLGTG 147

[202][TOP]
>UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FAR4_MAIZE
          Length = 372

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 19/184 (10%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +++I  L +DYM+F++   DAS+ANA RR++ISEVPT+AI+ V +  N+SV+ DE ++HR
Sbjct: 73  KIEINRLTEDYMEFDMIGIDASIANAFRRILISEVPTMAIEKVFMADNNSVIADEVLSHR 132

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
           LGLIPL ++  +    S      + D   E  ++ + L V C  +S  + V S +L    
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPNERNTIVYKLHVSCPKNSQRITVKSSELEWLP 186

Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564
                       S D       FS +    +E   G   + I I +L  GQ + L A A 
Sbjct: 187 EGSQLSMSAPAQSGDKQKTFTSFSQSQKEILEKPLGVKYKDITIARLGPGQAIELEAHAV 246

Query: 565 KGIG 576
           KG G
Sbjct: 247 KGTG 250

[203][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
           dispar SAW760 RepID=B0EHR6_ENTDI
          Length = 283

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 1/176 (0%)
 Frame = +1

Query: 52  MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 231
           ME   Y R P +   E K++ + F +  TD S+ N LRRV+++E PT+AI LV +  NSS
Sbjct: 1   MEQPRYNRQPIITNVECKEEKLSFHIERTDTSMVNGLRRVIMAETPTIAIQLVRVYANSS 60

Query: 232 VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV 411
            L DEFIAHRLGLIP+ S +      + D                  L+ +  ++  + V
Sbjct: 61  YLCDEFIAHRLGLIPIDSTQIHNFEDTDD--------------AILELKKENNSNQLVVV 106

Query: 412 TSKDLYS-SDHTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           TS DL S  D  V PV++          +D   I+I +L   Q + +    +KG G
Sbjct: 107 TSNDLVSIGDKRVAPVNY---------RNDVDPIVITQLGPRQNIHMVCYVKKGTG 153

[204][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
           RepID=Q5KIG6_CRYNE
          Length = 350

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 11/173 (6%)
 Frame = +1

Query: 91  IRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGL 270
           ++ L    ++F+L   DAS+ANALRR +I+EVPTVAI+ V +  N+S++ DE + HR+GL
Sbjct: 51  VQRLTPSTIEFDLVGVDASIANALRRTLIAEVPTVAIEEVYVWNNTSIMQDEVLCHRVGL 110

Query: 271 IPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD-------- 423
           +PL  + R++  R S +    + D      +V F LRV+C     +D +  D        
Sbjct: 111 VPLKIDPRSLRYRPSANSQPHEHD------TVVFDLRVRCDRRPNVDRSETDPKKMYFDS 164

Query: 424 -LYSSDHTVVPV-DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            +YS     VP  D                I++VKLR GQ++ L   ARKG+G
Sbjct: 165 NVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLRPGQQVDLHCFARKGVG 217

[205][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
           RepID=Q4PBM5_USTMA
          Length = 320

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 13/178 (7%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V +  L D   +F+L   DAS+ANA+RRV+++EVPTVAI+ V I  N+S++ DE ++HR
Sbjct: 94  KVIVTRLSDASCEFDLIGVDASIANAVRRVLMAEVPTVAIEHVYIWNNTSIIQDEVLSHR 153

Query: 262 LGLIPLT-SERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSKDLYS 432
           LGL+PL  +   + MR         GD   +  +V FHL+ KC  +  +    T  D   
Sbjct: 154 LGLVPLAINPDKVAMRM-------PGDEADDSNTVVFHLKAKCERNRSAARGETDPDKLY 206

Query: 433 SDHTVVPVDF----------SAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             H V                 ADS      D   I+I KLR GQEL L     KGIG
Sbjct: 207 IGHNVYSEQLRWDAKGGQEKDFADSPPRPVQD--KILIAKLRPGQELDLELHCEKGIG 262

[206][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
           capsulatus H143 RepID=C6HA00_AJECH
          Length = 380

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294
           F L   DA++ANA RR+MI+E+P++AI+ V I  N+SV+ DE +AHRLGL+PLT  SE  
Sbjct: 66  FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125

Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
             +R+ R   +     G    +Y +V  HL V+C  +        D         +Y+ D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185

Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            T  PV   +    +   V  S    I++ KLR GQ++ +     KGIG
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234

[207][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
           Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
          Length = 380

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294
           F L   DA++ANA RR+MI+E+P++AI+ V I  N+SV+ DE +AHRLGL+PLT  SE  
Sbjct: 66  FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125

Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
             +R+ R   +     G    +Y +V  HL V+C  +        D         +Y+ D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185

Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            T  PV   +    +   V  S    I++ KLR GQ++ +     KGIG
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234

[208][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
           Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
          Length = 380

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT--SERA 294
           F L   DA++ANA RR+MI+E+P++AI+ V I  N+SV+ DE +AHRLGL+PLT  SE  
Sbjct: 66  FSLVGVDAAIANAFRRIMIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGI 125

Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
             +R+ R   +     G    +Y +V  HL V+C  +        D         +Y+ D
Sbjct: 126 NWLRWFRQPTEGRPDSGSELADYNTVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKD 185

Query: 439 HTVVPV---DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            T  PV   +    +   V  S    I++ KLR GQ++ +     KGIG
Sbjct: 186 ITFHPVGRQETYFQEPDGVIRSANPDILLAKLRPGQKIDIEMHCVKGIG 234

[209][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
           marinus F1 RepID=A3DMQ6_STAMF
          Length = 280

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 63/156 (40%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
 Frame = +1

Query: 115 MKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERA 294
           ++  ++D    V N++RR +I+EVPT+AID V   +NSSV  DE+IAHRLGLIPLTSE A
Sbjct: 13  LRLYIKDIPLHVLNSIRRAIIAEVPTMAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAA 72

Query: 295 MG-MRFSRDC-DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHTVVPVDFSA 468
           +   +   +C +A D     E C V+  L  K      + + S DL +SD  V PV    
Sbjct: 73  LDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEGKLVTLHSGDLKTSDPDVKPV---- 128

Query: 469 ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
                        I I+ L K QE+RL A AR G G
Sbjct: 129 ----------YDNIPIIVLGKNQEIRLEAYARLGRG 154

[210][TOP]
>UniRef100_UPI00005A0224 PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
           isoform 2 n=1 Tax=Canis lupus familiaris
           RepID=UPI00005A0224
          Length = 72

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 42/68 (61%), Positives = 55/68 (80%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           YA  P V+I EL D+ +KF + +TD +VAN++RRV I+EVP +AID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 247 FIAHRLGL 270
           FIAHRLGL
Sbjct: 63  FIAHRLGL 70

[211][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
           RepID=Q6DRM8_DANRE
          Length = 343

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R++I    ++ ++F++   DA++ANA RR++++EVPT+AI+ V I  N+S++ DE +AHR
Sbjct: 47  RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 106

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
           LGL+P+ ++ R    R S D +  + D      +++  L+VKC  +      S D     
Sbjct: 107 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 160

Query: 424 ----LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
               +YS D   +P+   A   +  +     G I++ ++R GQEL +     KGIG
Sbjct: 161 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIG 216

[212][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
           RepID=A2ATX1_DANRE
          Length = 362

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 56/176 (31%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R++I    ++ ++F++   DA++ANA RR++++EVPT+AI+ V I  N+S++ DE +AHR
Sbjct: 66  RIEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHR 125

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
           LGL+P+ ++ R    R S D +  + D      +++  L+VKC  +      S D     
Sbjct: 126 LGLVPIKADPRLFEYRNSEDQEGTEID------TIQLQLKVKCTRNPRAPKDSSDPKELY 179

Query: 424 ----LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
               +YS D   +P+   A   +  +     G I++ ++R GQEL +     KGIG
Sbjct: 180 LNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIG 235

[213][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
           n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
          Length = 347

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V I  L  + M FE+   DAS+ANA RR++I+E+PT+A + V I  N+S++ DE ++HR
Sbjct: 46  KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 105

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
           +GL+P++++  M   F       +     +Y +V F L  KC  +       KD      
Sbjct: 106 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 164

Query: 424 ---LYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
              +YS D    P     +  A +   V   D   I++ KLR GQE+ L A A  GIG
Sbjct: 165 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPD---IVVAKLRPGQEIDLEAHAILGIG 219

[214][TOP]
>UniRef100_Q0W1V3 DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured
           methanogenic archaeon RC-I RepID=Q0W1V3_UNCMA
          Length = 262

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 63/163 (38%), Positives = 86/163 (52%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +++I ELKD   KF L D   + AN LRR MI++VP +AID V+I  N+SVL DE +A R
Sbjct: 2   KLEIIELKDRKAKFVLTDVTPAFANGLRRAMIADVPKMAIDYVDIYDNTSVLFDEMLALR 61

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           LGLIPL +   M  +   +C+ C G G C  C V     +    +    V S D+ SSD 
Sbjct: 62  LGLIPLKTNLDM-YQLQSECE-CKGAG-CSLCQV----TLSVSAEGPCVVHSSDMKSSDP 114

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
             VPVD                I I++L++GQ++     AR G
Sbjct: 115 ETVPVD--------------NNIPIIELKQGQKVVASGTARLG 143

[215][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
          Length = 348

 Score = 87.8 bits (216), Expect = 5e-16
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 13/178 (7%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V I  L  + M FE+   DAS+ANA RR++I+E+PT+A + V I  N+S++ DE ++HR
Sbjct: 47  KVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
           +GL+P++++  M   F       +     +Y +V F L  KC  +       KD      
Sbjct: 107 IGLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYV 165

Query: 424 ---LYSSDHTVVP----VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
              +YS D    P     +  A +   V   D   I++ KLR GQE+ L A A  GIG
Sbjct: 166 NSEVYSGDLIWKPQGRQEERFADNPIRVVNPD---IVVAKLRPGQEIDLEAHAILGIG 220

[216][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
          Length = 316

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 13/183 (7%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           + R   + I    D+ + FE+ + DA +AN+LRR+MI+E+PT+AI  V++  N+SV+ DE
Sbjct: 27  FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86

Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTLD 408
            +AHRLGLIP+ ++    ++F    +  D +   E  S++F L  KC        D  ++
Sbjct: 87  VLAHRLGLIPIIAD---PLQF---VEKDDQEEYNELNSIDFTLYAKCEKKPNSKQDDPIE 140

Query: 409 --VTSKDLYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
              T+  ++SS     P       F+A     V ++    III KLR+ QEL LR I  K
Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSN----IIIAKLRENQELNLRLICEK 196

Query: 568 GIG 576
           G+G
Sbjct: 197 GVG 199

[217][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
          Length = 339

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 10/175 (5%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +VKI  L D+Y  F+L   D S+ANA RR+MI+++PT+A++ V I  N+S++ DE +AHR
Sbjct: 46  QVKIHSLTDNYSNFDLIGIDTSLANAFRRIMIADIPTIAVEEVFIHANTSIIQDEVLAHR 105

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD--LYSS 435
           LGL+PL           R  DA + +   +  S  F LR+    +   D T K+  +Y+ 
Sbjct: 106 LGLVPLVINPERINALPRGLDASEIEDYYD-DSNTFVLRLNVTCERLADGTMKNAHIYAR 164

Query: 436 DHTVVPV--------DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           D T  P+        D    +   V   D   I+I KLR  Q + L      G G
Sbjct: 165 DITFDPMGNQCQWVKDEGLENVFKVANPD---ILIAKLRPNQSINLTMFCHLGFG 216

[218][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
           Tax=Paracoccidioides brasiliensis Pb01
           RepID=C1H4P1_PARBA
          Length = 380

 Score = 87.4 bits (215), Expect = 7e-16
 Identities = 60/171 (35%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTS--ERA 294
           F L   DAS+ANA RR++I+E+P++AI+ V I  N+SV+ DE +AHRLGL+PLT   E  
Sbjct: 66  FSLIGVDASIANAFRRILIAEIPSLAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGI 125

Query: 295 MGMRFSR---DCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSD 438
             +R+ R   + D   G    +Y ++  HL V+C  +        D         +Y+ D
Sbjct: 126 NWLRWFRQPNEGDPSSGSELADYNTIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKD 185

Query: 439 HTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            T  PV      F   D     T+    I++ KLR GQ++ +     KGIG
Sbjct: 186 ITFQPVGRQEAYFPEPDGGIRPTNP--DILLAKLRPGQKIDIEMHCVKGIG 234

[219][TOP]
>UniRef100_Q171Q8 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
           RepID=Q171Q8_AEDAE
          Length = 335

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 11/176 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++ I   +++ ++F++   + ++ANA RR+M+SEVP++AI+ V I  N+S++ DE +AHR
Sbjct: 45  QIVIVRYEENELEFDMVGVNPAIANAFRRLMLSEVPSMAIEKVHIYNNTSIIQDEVLAHR 104

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVTSKDLYS 432
           LGLIPL   RA    F    +  D     +  ++EF L+VKC     DST ++T+ D   
Sbjct: 105 LGLIPL---RADPRLFEYKTNENDPPNALD--TLEFELKVKCTKKNKDST-EITNNDSMY 158

Query: 433 SDHTV-------VPVDFSAADSSSVETSD-GRGIIIVKLRKGQELRLRAIARKGIG 576
            +H++       +PV   A+     +       I+I K+R G E  ++  A KGIG
Sbjct: 159 KNHSIYSGQIKWIPVGNQASIYKEADVGPIDDDILISKMRPGHEFDIKLFAMKGIG 214

[220][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
           Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
          Length = 346

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 61/169 (36%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +K   +  + + FEL+  DA++ NALRR++ISEVPTVAI+ V+I  N+ V+ DE +AHRL
Sbjct: 61  LKFLSVSPERVVFELKGVDAAIPNALRRILISEVPTVAIETVQIWQNTGVVQDEVLAHRL 120

Query: 265 GLIP-LTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTL--DVTSKDLYSS 435
           GLIP +    A+  R   + +  D +      ++   L VKC T+ +L    TS  +Y+ 
Sbjct: 121 GLIPFIVDPTALNYR-QPNQEVTDEN------ALRVSLHVKC-TEQSLGPHQTSLPVYAK 172

Query: 436 DHTVVPVDFSAADSSSVETSDG--RGIIIVKLRKGQELRLRAIARKGIG 576
                P+  S  ++ +          I+I KLR GQE+ L+A   KG+G
Sbjct: 173 HIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIELKAYLEKGVG 221

[221][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
           n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
          Length = 316

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 64/183 (34%), Positives = 100/183 (54%), Gaps = 13/183 (7%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           + R   + I    D+ + FE+ + DA +AN+LRR+MI+E+PT+AI  V++  N+SV+ DE
Sbjct: 27  FQRDLEINILSKTDEKIVFEIINIDAPIANSLRRIMIAEIPTMAIHKVQVIQNTSVIPDE 86

Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTLD 408
            +AHRLGLIP+ ++    ++F    +  D +   E  S++F L  KC        D  ++
Sbjct: 87  VLAHRLGLIPIIAD---PLQF---IEKDDQEEYNELNSIDFTLVAKCEKKPNSKHDDPIE 140

Query: 409 --VTSKDLYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
              T+  ++SS     P       F+A     V ++    III KLR+ QEL LR I  K
Sbjct: 141 QQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSN----IIIAKLRENQELNLRLICEK 196

Query: 568 GIG 576
           G+G
Sbjct: 197 GVG 199

[222][TOP]
>UniRef100_B5IWT9 RNA polymerase Rpb3/Rpb11 dimerisation domain n=1 Tax=Thermococcus
           barophilus MP RepID=B5IWT9_9EURY
          Length = 258

 Score = 86.7 bits (213), Expect = 1e-15
 Identities = 64/165 (38%), Positives = 83/165 (50%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++K+ E ++D ++F L   DA+ ANALRRV+I EVPT A+D VE   N S L DE IAHR
Sbjct: 2   KIKVLEKREDAIRFILEGVDAAFANALRRVIIGEVPTFAVDEVEFYENDSALFDEIIAHR 61

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDH 441
           L +IPLT+      RF  D    D          E+ + +    +    V S DL S D 
Sbjct: 62  LAMIPLTTPYD---RFELDALELD----------EYTVTLSLEAEGPGVVYSGDLKSDDP 108

Query: 442 TVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            V PV                 I IVKL +GQ+L L A A+ G G
Sbjct: 109 DVKPVT--------------PNIPIVKLAEGQKLTLNAYAKLGRG 139

[223][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
           salar RepID=B5X7Z3_SALSA
          Length = 353

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 10/175 (5%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           R+ + ++ +  ++F++   DA++ANA RR++++EVPT+A++ V I  N+S++ DE +AHR
Sbjct: 57  RIDVVQMDETSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLIYNNTSIIQDEILAHR 116

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD------ 423
           LGLIP+ ++     R     +A D +G  E  +++  L++KC  +      S D      
Sbjct: 117 LGLIPIKAD----PRLFEYRNAGDEEG-TEIDTIQLQLKIKCTRNPRATKDSADPRELYL 171

Query: 424 ---LYSSDHTVVPVDFSAADSSSVETSDGRG-IIIVKLRKGQELRLRAIARKGIG 576
              +YS D    P+   A   +        G I++ +LR GQEL +     KGIG
Sbjct: 172 NHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLRPGQELDIVMHCVKGIG 226

[224][TOP]
>UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1
           Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH
          Length = 336

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 16/174 (9%)
 Frame = +1

Query: 103 KDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLT 282
           K+  ++F+L   DA +ANALRR+MI+EVPT+AI  V I  N+S++ DE +AHRLGLIP+ 
Sbjct: 54  KNKELEFDLMGVDAPIANALRRIMIAEVPTMAIHKVYIYQNTSIIPDEVLAHRLGLIPIY 113

Query: 283 SERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--------MTDSTLDVTSKDLYSSD 438
           ++  +      +      D   E  S++F L++KC         +++ L+  + + Y  +
Sbjct: 114 ADPRLFEEKQEE------DEYNEKNSLKFTLKIKCSKKEQYKNYSEADLENLTPETYLEN 167

Query: 439 HTVVPVDF----SAADSSSVETSDGR----GIIIVKLRKGQELRLRAIARKGIG 576
             V   DF        +   E +  R     II+ KLR+ QE+    I +KGIG
Sbjct: 168 AIVYSGDFKWVSQGEQNKKFEENPIRMVHDNIIVAKLRENQEIICEVICQKGIG 221

[225][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
          Length = 344

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 10/180 (5%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           + R  ++ I  L D  M+F++   + ++ANA+RR++++EVPT+A D V +  N+S++ DE
Sbjct: 42  FERNFQIGIVSLDDMTMEFDMIGVNPAIANAIRRILLAEVPTMAPDKVFMYNNTSIVQDE 101

Query: 247 FIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTD--STLDVTSK 420
            +AHR+GL+P   +  M     +D +    D      +VEF L+VKC  +  +  D T+ 
Sbjct: 102 VLAHRIGLVPFNIDPRMFDYREKDSEGSPED------TVEFELKVKCTRNPQAPKDATTP 155

Query: 421 DLYSSDHTVVPVDFSAADSSSVETSDGR--------GIIIVKLRKGQELRLRAIARKGIG 576
           D    DH V     +     S     G          II+ KLR GQE+ L+    KG G
Sbjct: 156 DELYKDHVVYTRHLTWTPIGSQAEIFGNKPPKPVYDDIILAKLRPGQEIDLKLHCMKGTG 215

[226][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
           Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
          Length = 291

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +KI E   + ++F+    D SVAN LRR+MI+EVPT+AI++V +E NSS + DE + HRL
Sbjct: 8   IKISE-SPEKVEFDAMGIDVSVANGLRRIMIAEVPTMAIEMVVLEDNSSAIPDEMLCHRL 66

Query: 265 GLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSDHT 444
           GLIP+ ++     +F +D    D     E  ++ F L V C  DS  +  +  +YSSD  
Sbjct: 67  GLIPILAD-PRKFKFPKDRHFTD---PTEEDTIVFTLDVTCTLDSAKNPVNNKVYSSDLI 122

Query: 445 VVP---VDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             P    + + AD       D   I+I +L+  Q ++ +    KGIG
Sbjct: 123 WEPQGEQETTFADCPIKPVFD--DILIAELQPHQHIKCKLFCCKGIG 167

[227][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
           Tax=Taeniopygia guttata RepID=UPI000194C203
          Length = 346

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 59/180 (32%), Positives = 96/180 (53%), Gaps = 15/180 (8%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV +   ++D ++F++   DA++ANA RR++++EVPT+A++ V +  N+S++ DE +AHR
Sbjct: 50  RVDVIREEEDALEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
           LGLIP+ ++ R    R   D +  + D      +++F L++KC  +      S D     
Sbjct: 110 LGLIPIRADPRLFEYRNQGDQEGTEID------TLQFQLKIKCKRNPQAAKESSDPDELY 163

Query: 424 ----LYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
               +YS   T VP+      F  AD   V       I+I  LR GQE+ +     KGIG
Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDD----ILIALLRPGQEIDVLMHCVKGIG 219

[228][TOP]
>UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum
           RepID=UPI000175846B
          Length = 338

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 10/175 (5%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV I   +++ ++F+L      +AN  RR+M+S+VPT+AI+ V I  N+S++ DE +AHR
Sbjct: 44  RVVIVRSEENELEFDLIGIHPFLANTFRRLMLSDVPTMAIEKVHILNNTSIIQDEVLAHR 103

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMT--DSTLD-VTSKDLY 429
           LGLIPL ++ R   M+  R     +G    E  ++EF L++KC    DS+ D + ++D+Y
Sbjct: 104 LGLIPLKADPRLFEMKTDRKSSTAEG---TEQDTLEFALKIKCTNNKDSSKDSLRAEDMY 160

Query: 430 SSDHTV------VPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            +++        VP+       S V       I+I K+R G EL L+ +A K  G
Sbjct: 161 KNNNVYSKHIKWVPIGKQKERFSDVGPIH-PDILIAKMRPGHELDLKLLAVKSNG 214

[229][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
           Tax=Monodelphis domestica RepID=UPI0000F2C148
          Length = 346

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 13/183 (7%)
 Frame = +1

Query: 67  YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 246
           + R  RV +  + ++ ++F++   DA++ANA RR++++EVPT+A++ V +  N+S++ DE
Sbjct: 45  FEREFRVDVVHMDENSLEFDMIGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDE 104

Query: 247 FIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
            +AHRLGLIP+ ++ R    R   D D  + D      +++F L+VKC  +      S D
Sbjct: 105 ILAHRLGLIPIRADPRLFEYRNQGDEDGTEID------TLQFQLKVKCTRNPQAAKDSSD 158

Query: 424 ---------LYSSDHTVVPVDFSA---ADSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
                    +Y+   T +P+   A    + +     D   I+I +LR GQEL L     K
Sbjct: 159 PNELYLNHKVYTKHMTWIPLGNQADVFPEGTIRPVHD--DILIAQLRPGQELDLLMHCVK 216

Query: 568 GIG 576
           GIG
Sbjct: 217 GIG 219

[230][TOP]
>UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae
           RepID=Q7PPN8_ANOGA
          Length = 261

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 59/183 (32%), Positives = 101/183 (55%), Gaps = 12/183 (6%)
 Frame = +1

Query: 64  SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
           S+ R  ++ +    ++ ++F++     ++AN  RR+M+SEVP++AI+ V I  N+S++ D
Sbjct: 1   SFKRKLQIVVVRYDENELEFDMIGVSCAIANVFRRLMLSEVPSMAIEKVHIYNNTSIIQD 60

Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCM---TDSTLDVT 414
           E +AHRLGLIPL ++  M      +  A + D      ++EF L+VKC     DST +VT
Sbjct: 61  EVLAHRLGLIPLRADPRM-----FEYKANETDPPSALDTLEFELKVKCTRKNKDST-EVT 114

Query: 415 SKDLYSSDHTV-------VPVDFSAA--DSSSVETSDGRGIIIVKLRKGQELRLRAIARK 567
           + +    +H++       VP+   A     ++V   D   I+I K+R G E  ++  A K
Sbjct: 115 NNENMYKNHSIYSGQIKWVPIGNQATIYTEAAVGPIDD-DILISKMRPGHEFDIKLFAVK 173

Query: 568 GIG 576
           G+G
Sbjct: 174 GVG 176

[231][TOP]
>UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2
           Tax=Aspergillus RepID=B8NHK8_ASPFN
          Length = 373

 Score = 85.5 bits (210), Expect = 3e-15
 Identities = 60/170 (35%), Positives = 89/170 (52%), Gaps = 18/170 (10%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPL--TSERA 294
           F L   DAS+ANA RR++++EVP+VAI+ V +  N+SV+ DE +A RLGLIPL  + +  
Sbjct: 66  FSLIGVDASIANAFRRIVMAEVPSVAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGSVDGI 125

Query: 295 MGMRFSRDC--DACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDH 441
             MR+ +    D  +G    +Y ++   L ++C  +   D T  D         +Y+ D 
Sbjct: 126 NWMRWFKKATEDDPEGSDPSDYNTIVLRLDIECTKNPNADATENDPRKLYKNAHVYARDI 185

Query: 442 TVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           T  PV      F+  D+      D   I+I KLR GQ++ L     KGIG
Sbjct: 186 TFHPVGRQEQFFTGEDAIQPVNPD---ILIAKLRPGQKIDLEMHCIKGIG 232

[232][TOP]
>UniRef100_C8TDY9 Rna polymerase ii b3 subunit n=1 Tax=Eimeria tenella
           RepID=C8TDY9_EIMTE
          Length = 147

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 43/78 (55%), Positives = 60/78 (76%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +++ EL +  ++F L + DAS+ANALRRVMISEVPT+AIDLV +  N+SVL+DE+I HRL
Sbjct: 44  IRVTELSNKVVRFTLSNCDASIANALRRVMISEVPTLAIDLVTVFENTSVLHDEYIVHRL 103

Query: 265 GLIPLTSERAMGMRFSRD 318
           GL+P+ S   +G   +RD
Sbjct: 104 GLLPIDSSN-VGNFVARD 120

[233][TOP]
>UniRef100_B4KGY1 GI17014 n=1 Tax=Drosophila mojavensis RepID=B4KGY1_DROMO
          Length = 333

 Score = 85.1 bits (209), Expect = 4e-15
 Identities = 66/181 (36%), Positives = 102/181 (56%), Gaps = 12/181 (6%)
 Frame = +1

Query: 70  ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
           +++  V +R  ++  ++F+L     ++ANA RR+M+SEVP++AI+ V I  N+S++ DE 
Sbjct: 38  SKLQVVIVRNDEEHGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97

Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKD 423
           +AHR+GL+PL   RA    F+   D     G  E  ++E+ L+VKC    D++ D ++ D
Sbjct: 98  LAHRMGLLPL---RADPRLFAYRTDESTDQG-TEQDTLEYELKVKCTRRKDASKDQSNFD 153

Query: 424 -------LYSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIARKGI 573
                  +YS     +P    A   S  E+S G     I+I +LR G EL LR IA KGI
Sbjct: 154 DIYRNHKVYSGHLKWLPKGKQAQIYS--ESSVGCIHEDILIAQLRPGHELDLRLIAVKGI 211

Query: 574 G 576
           G
Sbjct: 212 G 212

[234][TOP]
>UniRef100_UPI00019261EE PREDICTED: similar to DNA-directed RNA polymerases I and III
           subunit RPAC1 n=1 Tax=Hydra magnipapillata
           RepID=UPI00019261EE
          Length = 354

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 58/181 (32%), Positives = 100/181 (55%), Gaps = 16/181 (8%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++ + +L  + M+F++   DAS+ANA RR++I+EVPT+AI+ V I  N++++ DE +AHR
Sbjct: 48  KIDVIKLNQNEMEFDMIGIDASIANAFRRILIAEVPTMAIEKVFIFNNTTIVQDEILAHR 107

Query: 262 LGLIPLTSE----RAMGMRFSRDCDACDGDGQC--EYCSVEFHLRVKCMTD--STLDVTS 417
           LGLIP+ ++         +   +    D +     E+  + F L++KC  +  ++ D T 
Sbjct: 108 LGLIPILADPREFNFPPAKLEDESKLTDEERLAVDEHHHLVFELKIKCSKNPKASSDATD 167

Query: 418 KDLYSSDHTV-------VPVDFSAAD-SSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
            D+   ++ V       +P+   A   S+++       I+I KLR GQEL +R    KGI
Sbjct: 168 PDVLYLNNKVMTKHMKWIPIGRQAEKFSTNIVRPVFDDILIAKLRPGQELDIRMHCVKGI 227

Query: 574 G 576
           G
Sbjct: 228 G 228

[235][TOP]
>UniRef100_UPI00017936CF PREDICTED: similar to DNA-directed RNA polymerase n=1
           Tax=Acyrthosiphon pisum RepID=UPI00017936CF
          Length = 325

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           ++ I    D+ ++F+L   D +VAN+LRRV+ISEVP++AI+ V I  N+S + DE +AHR
Sbjct: 33  KINIISRSDNDLEFDLVGIDVAVANSLRRVIISEVPSMAIEKVHIYQNTSYILDEILAHR 92

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDV------TSK 420
           LGLIPL ++ R   M+   + +  + D      S+ + +++KC T   LD        S 
Sbjct: 93  LGLIPLKADPRQFKMKEDENSEPNEHD------SLVYEMKIKC-TKKDLDALAHKQFISF 145

Query: 421 DLYSSDHTVVPV----DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGI 573
            +Y+     +P+    D        + + D   I+I KLR GQE+ L+  A KGI
Sbjct: 146 PVYAKHIKWLPLGNQKDIFTEKDVGIISDD---ILIAKLRPGQEIELKMFAVKGI 197

[236][TOP]
>UniRef100_Q29L21 GA17664 n=1 Tax=Drosophila pseudoobscura pseudoobscura
           RepID=Q29L21_DROPS
          Length = 333

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 60/176 (34%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V I    +D ++F++     ++ANA RR+M+SEVP++AI+ V I  N+S++ DE +AHR
Sbjct: 42  QVAIVRNDEDGLEFDMIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEVLAHR 101

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYS 432
           +GL+PL ++ R    R         G+   E  ++E+ L+VKC    D++ D ++ D   
Sbjct: 102 MGLLPLKADPRLFAYRTEE-----SGEAGTEQDTLEYELKVKCTRRKDASKDQSNFDDIY 156

Query: 433 SDHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
            +H V       +P    A   S S+       I+I +LR G EL LR +A KG+G
Sbjct: 157 KNHKVYSGHLKWLPKGKQAQIYSESMVNCIHEDILIAQLRPGHELDLRLVAVKGLG 212

[237][TOP]
>UniRef100_A8Q352 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
           7966 RepID=A8Q352_MALGO
          Length = 270

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 57/136 (41%), Positives = 75/136 (55%), Gaps = 14/136 (10%)
 Frame = +1

Query: 205 LVEIEVNSSVLNDEFIAHRLGLIPLTS-ERAMGMRFSRDCDACDGDGQCEYCSVEFHLRV 381
           +VEI +N++VL DEF+AHRLG+IPL S + A  +   R+C   DG   C+ CSVE  L  
Sbjct: 1   MVEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDG---CDRCSVELSLDA 57

Query: 382 KCMTD-STLDVTSKDL---------YSSDHTVVPVDFSAADSSSVETSD---GRGIIIVK 522
            C +D   + VTSKDL         YS +    PV     D       D     G++IV+
Sbjct: 58  LCTSDRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFGKPVGQDDPNANGVVIVQ 117

Query: 523 LRKGQELRLRAIARKG 570
           LRKGQ ++ R IARKG
Sbjct: 118 LRKGQHIKARCIARKG 133

[238][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
           Tax=Gallus gallus RepID=UPI00003ACD10
          Length = 346

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 15/180 (8%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV +   +D  ++F++   DA++ANA RR++++EVPT+A++ V +  N+S++ DE +AHR
Sbjct: 50  RVDVVREEDGVLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVFVYNNTSIVQDEILAHR 109

Query: 262 LGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD----- 423
           LGLIP+ ++ R    R   D +  + D      +++F L++KC  +      S D     
Sbjct: 110 LGLIPIRADPRLFEYRNQGDEEGTEID------TLQFQLKIKCSRNPQAAKESSDPNELY 163

Query: 424 ----LYSSDHTVVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
               +YS   T VP+      F  AD   V       I+I  LR GQE+ +     KGIG
Sbjct: 164 FNHKVYSKHMTWVPLGNQTDLFPDADFRPVHDD----ILIALLRPGQEIDVLMHCVKGIG 219

[239][TOP]
>UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7Q9B1_VITVI
          Length = 362

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 17/182 (9%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           RV++  L +D M+F++   D S+ANA RR++I+E+PT+AI+ V I  N+S++ DE +AHR
Sbjct: 66  RVEVIRLSEDDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIANNTSIVQDEVLAHR 125

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC------MTDSTL-----D 408
           LGLIP+ ++  +   F    D  + D   E  ++ F+L V+C      +T   +      
Sbjct: 126 LGLIPINADPRL---FD---DLSENDTPNEKNTIVFNLHVRCERGGPRLTGMVIVLCIYA 179

Query: 409 VTSKDLYSSDHTVVPVDFSAADSSSVETSDGR------GIIIVKLRKGQELRLRAIARKG 570
           V +  + S++   +P    +   S  E SD         III KL  GQE+ L A A KG
Sbjct: 180 VLNNAVKSNELKWLP--HGSDQDSLPEFSDKSIGPKHPDIIIAKLGPGQEIELEAHAVKG 237

Query: 571 IG 576
           +G
Sbjct: 238 MG 239

[240][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
           RepID=B2A971_PODAN
          Length = 372

 Score = 84.3 bits (207), Expect = 6e-15
 Identities = 62/169 (36%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
 Frame = +1

Query: 121 FELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG 300
           F L   DAS+ANA RR+MI++VPT+AI+ V +  N+SV+ DE +AHRLGLIP T  R   
Sbjct: 66  FSLIGIDASIANAFRRIMIADVPTLAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGREGL 125

Query: 301 MRFSR-DCDACDGD-GQC-EYCSVEFHLRVKCMTDSTLDVTSKD---------LYSSDHT 444
             F +      +GD  +C ++ +V   L VKC  +   D    D         +Y+ D  
Sbjct: 126 TDFLKWYRKPANGDPAECKDFNTVALELNVKCEHNENADPNETDPTKLYHHAHVYAKDIV 185

Query: 445 VVPVD-----FSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             P+      FS  D       D   I+I KLR GQE+ ++    KG+G
Sbjct: 186 FKPIGRQVDYFSGEDIIRPVNPD---ILIAKLRPGQEINVQMHMHKGVG 231

[241][TOP]
>UniRef100_Q10MU3 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
           expressed n=1 Tax=Oryza sativa Japonica Group
           RepID=Q10MU3_ORYSJ
          Length = 352

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V +  L +D M+F++   DAS+ANA RR++I+EVPT+AI+ V +  N+SV+ DE ++HR
Sbjct: 73  KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
           LGLIPL ++  +    S      + D   E  ++ + L V C   S  L V S DL    
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186

Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564
                       S D       FS +    +E   G   + I I +L  GQ + L   A 
Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246

Query: 565 KGIG 576
           KGIG
Sbjct: 247 KGIG 250

[242][TOP]
>UniRef100_Q10MU2 Os03g0295400 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q10MU2_ORYSJ
          Length = 379

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 63/184 (34%), Positives = 92/184 (50%), Gaps = 19/184 (10%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V +  L +D M+F++   DAS+ANA RR++I+EVPT+AI+ V +  N+SV+ DE ++HR
Sbjct: 73  KVVVNRLTEDDMEFDMIGIDASMANAFRRILIAEVPTMAIEKVLMADNTSVIADEVLSHR 132

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDS-TLDVTSKDL---- 426
           LGLIPL ++  +    S      + D   E  ++ + L V C   S  L V S DL    
Sbjct: 133 LGLIPLDADPRLFEYIS------ENDVPTERNTIVYKLHVSCKKGSPRLTVKSGDLEWLP 186

Query: 427 -----------YSSDHTVVPVDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIAR 564
                       S D       FS +    +E   G   + I I +L  GQ + L   A 
Sbjct: 187 EGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKFKDITIARLGPGQAIELEVHAV 246

Query: 565 KGIG 576
           KGIG
Sbjct: 247 KGIG 250

[243][TOP]
>UniRef100_B4NW96 GE11271 n=1 Tax=Drosophila yakuba RepID=B4NW96_DROYA
          Length = 333

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 11/182 (6%)
 Frame = +1

Query: 64  SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
           +Y     +KI +  +D ++F+L     ++ANA RR+M+S+VP++AI+ V I  N+S++ D
Sbjct: 36  AYKEKLHIKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQD 95

Query: 244 EFIAHRLGLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVT 414
           E +AHR+GL+PL ++ R    R     +A       E  ++EF L+VKC    D+  D +
Sbjct: 96  EVLAHRMGLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQS 150

Query: 415 SKDLYSSDHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKG 570
           + D    +H V       +P    A   + S        I+I +LR G EL LR +A KG
Sbjct: 151 NFDDIYKNHKVYSGHLKWLPKGKQAQIYNESAVNCIHDDILIAQLRPGHELDLRLVAVKG 210

Query: 571 IG 576
           +G
Sbjct: 211 LG 212

[244][TOP]
>UniRef100_B4LUA3 GJ24400 n=1 Tax=Drosophila virilis RepID=B4LUA3_DROVI
          Length = 333

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 60/179 (33%), Positives = 99/179 (55%), Gaps = 10/179 (5%)
 Frame = +1

Query: 70  ARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEF 249
           +++  V +R  +++ ++F+L     ++ANA RR+M+SEVP++AI+ V I  N+S++ DE 
Sbjct: 38  SKLQVVIVRNDEENGLEFDLIGVYPAIANAFRRLMLSEVPSMAIEKVYIYNNTSIIQDEV 97

Query: 250 IAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKD 423
           +AHR+GL+PL   RA    F+   +     G  E  ++E+ L+VKC    D++ D ++ D
Sbjct: 98  LAHRMGLLPL---RADPRLFAYRTEESTEQG-TEQDTLEYELKVKCTRRKDASKDQSNFD 153

Query: 424 LYSSDHTVVPVDFS---AADSSSVETSDGRG-----IIIVKLRKGQELRLRAIARKGIG 576
               +H V               + T +  G     I+I +LR G EL LR IA KG+G
Sbjct: 154 DIYKNHKVYSGHLKWLPKGKQGQIYTENSVGCIHEDILIAQLRPGHELDLRLIAVKGLG 212

[245][TOP]
>UniRef100_B3N4C9 GG25034 n=1 Tax=Drosophila erecta RepID=B3N4C9_DROER
          Length = 329

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 11/175 (6%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +KI +  +D ++F+L     ++ANA RR+M+S+VP++AI+ V I  N+S++ DE +AHR+
Sbjct: 39  IKIVKNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 98

Query: 265 GLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYSS 435
           GL+PL ++ R    R     +A       E  ++EF L+VKC    D+  D ++ D    
Sbjct: 99  GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 153

Query: 436 DHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           +H V       +P    A   S S        I+I +LR G EL LR +A KG+G
Sbjct: 154 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLG 208

[246][TOP]
>UniRef100_Q0UUA6 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
           RepID=Q0UUA6_PHANO
          Length = 350

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +VK          F L   D SVANA RR++++E+PT+AI+ V I  N+S++ DE +AHR
Sbjct: 27  KVKFHTHSPHDTSFSLTGIDTSVANAFRRILLAEIPTLAIEDVFIYQNTSIIQDEVLAHR 86

Query: 262 LGLIPLTSERAMGMR----FSRDCDACDGDG-QCEYCSVEFHLRVKCM------------ 390
           LGLIPL      G+R    + ++ D  +G G   +Y +V   L V+C             
Sbjct: 87  LGLIPLCGSH-KGLRWLKWYKKETDDDEGSGTPSDYNTVIMKLDVECSWQEGGLQRAVQG 145

Query: 391 -TDSTLDVTSKDLYSSDHTVVPV--DFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIA 561
            TD        ++Y+ D    P+   F    S     +    I+IVK+R GQ+++L   A
Sbjct: 146 ETDPDKLYIGHNVYAKDLVWEPLGKQFDEFPSGEEIRATNPDILIVKMRPGQKIQLSMHA 205

Query: 562 RKGIG 576
            KGIG
Sbjct: 206 IKGIG 210

[247][TOP]
>UniRef100_C5A249 DNA-directed RNA polymerase subunit D (RpoD) n=1 Tax=Thermococcus
           gammatolerans EJ3 RepID=C5A249_THEGJ
          Length = 260

 Score = 84.0 bits (206), Expect = 8e-15
 Identities = 62/166 (37%), Positives = 82/166 (49%)
 Frame = +1

Query: 79  PRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAH 258
           P+ +I E ++D +KF LR  D   ANALRR +++EVPT A+D VE   N S L DE IAH
Sbjct: 3   PKFEIFERREDAIKFILRGVDVPFANALRRTILAEVPTFAVDEVEFFENDSALFDEIIAH 62

Query: 259 RLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKDLYSSD 438
           RL +IPLT+      RFS D    D          ++ + +    +    V S DL S D
Sbjct: 63  RLAMIPLTTPVE---RFSLDALELD----------DYTVTLSLQAEGPGMVYSGDLKSDD 109

Query: 439 HTVVPVDFSAADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
             V P +                I IVKL +GQ+L   A A+ G G
Sbjct: 110 EGVKPAN--------------PNIPIVKLAEGQKLTFNAYAKLGRG 141

[248][TOP]
>UniRef100_UPI000186EDAD DNA-directed RNA polymerase I 40 kDa polypeptide, putative n=1
           Tax=Pediculus humanus corporis RepID=UPI000186EDAD
          Length = 347

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 60/176 (34%), Positives = 100/176 (56%), Gaps = 11/176 (6%)
 Frame = +1

Query: 82  RVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHR 261
           +V I +L D  M+F+L   + +VANA RR+++SEVP++AI+ V +  N++++ DE +AHR
Sbjct: 44  KVVIVKLNDTEMEFDLVGINCAVANAFRRILLSEVPSMAIEKVFVSNNTTLIKDEVLAHR 103

Query: 262 LGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTS---KDLYS 432
           LGL+PL ++  +    S + +  +     E  ++EF L++KC  +      S    DLY 
Sbjct: 104 LGLVPLKADSRLFEYRSENSNEPN-----EQDTLEFELKIKCSVNKEGHKNSYQIDDLY- 157

Query: 433 SDHTVVP-----VDFSAADSSSVETSDG---RGIIIVKLRKGQELRLRAIARKGIG 576
            +H+V       V   +  ++  E + G     I++ KLR GQEL L+  A KG+G
Sbjct: 158 INHSVYSKHLKWVPIGSQGTTYDEKNIGPVLPDILLNKLRPGQELDLKLHAVKGLG 213

[249][TOP]
>UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max
           RepID=C6TAS0_SOYBN
          Length = 388

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
 Frame = +1

Query: 64  SYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLND 243
           S+    +V+++ L D  ++F++   D ++ANA RR++I+EVPT+AI+ V I  N+SV+ D
Sbjct: 76  SFCENFKVEVKRLTDSDIEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSVVQD 135

Query: 244 EFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKCMTDSTLDVTSKD 423
           E ++HRLGLIP+ ++  +   F    +A  GD + E  ++ F L V+C           D
Sbjct: 136 EVLSHRLGLIPIRADPRL---FEYPENA--GDDKNEKNTIVFKLHVRCQVGQPRITVKSD 190

Query: 424 L--YSSDHTVVPVD---------------FSAADSSSVETSDGR------GIIIVKLRKG 534
              +  + + +P +               F+ +  S  E S+         II+ KL  G
Sbjct: 191 KLKWLPNGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPG 250

Query: 535 QELRLRAIARKGIG 576
           QE+ L A A KGIG
Sbjct: 251 QEIELEAHAVKGIG 264

[250][TOP]
>UniRef100_Q9VMX3 CG3756 n=1 Tax=Drosophila melanogaster RepID=Q9VMX3_DROME
          Length = 333

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 11/175 (6%)
 Frame = +1

Query: 85  VKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRL 264
           +KI    +D ++F+L     ++ANA RR+M+S+VP++AI+ V I  N+S++ DE +AHR+
Sbjct: 43  IKIVRNDEDGLEFDLIGVYPAIANAFRRLMLSDVPSMAIEKVYIYNNTSIIQDEVLAHRM 102

Query: 265 GLIPLTSE-RAMGMRFSRDCDACDGDGQCEYCSVEFHLRVKC--MTDSTLDVTSKDLYSS 435
           GL+PL ++ R    R     +A       E  ++EF L+VKC    D+  D ++ D    
Sbjct: 103 GLLPLRADPRLFAYRTEESTEA-----GTEQDTLEFELKVKCSRRRDAGKDQSNFDDIYK 157

Query: 436 DHTV-------VPVDFSA-ADSSSVETSDGRGIIIVKLRKGQELRLRAIARKGIG 576
           +H V       +P    A   S S        I+I +LR G EL LR +A KG+G
Sbjct: 158 NHKVYSGHLKWLPKGKQAQIYSESAVNCIHDDILIAQLRPGHELDLRLVAVKGLG 212