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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 329 bits (844), Expect = 8e-89
Identities = 152/192 (79%), Positives = 169/192 (88%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
WF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +A
Sbjct: 400 WFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSA 459
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F
Sbjct: 460 IFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDF 519
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAH
Sbjct: 520 YIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAH 579
Query: 542 FYTSVLGVCGPH 577
FYT +LGV GPH
Sbjct: 580 FYTEMLGVAGPH 591
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 329 bits (844), Expect = 8e-89
Identities = 152/192 (79%), Positives = 169/192 (88%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
WF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +A
Sbjct: 1840 WFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSA 1899
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHND +EF RVR F
Sbjct: 1900 IFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDF 1959
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAH
Sbjct: 1960 YIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAH 2019
Query: 542 FYTSVLGVCGPH 577
FYT +LGV GPH
Sbjct: 2020 FYTEMLGVAGPH 2031
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 328 bits (840), Expect = 2e-88
Identities = 154/192 (80%), Positives = 169/192 (88%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
WF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +A
Sbjct: 400 WFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSA 459
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F
Sbjct: 460 IFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGF 519
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAH
Sbjct: 520 YAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAH 579
Query: 542 FYTSVLGVCGPH 577
FYT +LGV GPH
Sbjct: 580 FYTEMLGVSGPH 591
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 328 bits (840), Expect = 2e-88
Identities = 154/192 (80%), Positives = 169/192 (88%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
WF GEAIR+TLAEKKVKITDGSDKDAPTIE K FWELDFLKRKFLKLD G++QAPLD +A
Sbjct: 1842 WFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQAPLDRSA 1901
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F
Sbjct: 1902 IFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGF 1961
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAH
Sbjct: 1962 YAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAH 2021
Query: 542 FYTSVLGVCGPH 577
FYT +LGV GPH
Sbjct: 2022 FYTEMLGVSGPH 2033
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 291 bits (745), Expect = 2e-77
Identities = 136/193 (70%), Positives = 163/193 (84%), Gaps = 1/193 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMT 178
WF GEAIRVTLAEK++KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +
Sbjct: 398 WFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKS 457
Query: 179 AIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 358
AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRS
Sbjct: 458 AIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRS 517
Query: 359 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 538
F++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KA
Sbjct: 518 FYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKA 577
Query: 539 HFYTSVLGVCGPH 577
HFYT +LGVCGPH
Sbjct: 578 HFYTPILGVCGPH 590
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 291 bits (745), Expect = 2e-77
Identities = 136/193 (70%), Positives = 163/193 (84%), Gaps = 1/193 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKF-LKLDTGVIQAPLDMT 178
WF GEAIRVTLAEK++KITDGSDKDAPTIE KPF ELDFLKRKF + + G + APLD +
Sbjct: 1824 WFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQVWAPLDKS 1883
Query: 179 AIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 358
AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRS
Sbjct: 1884 AIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRS 1943
Query: 359 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 538
F++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KA
Sbjct: 1944 FYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKA 2003
Query: 539 HFYTSVLGVCGPH 577
HFYT +LGVCGPH
Sbjct: 2004 HFYTPILGVCGPH 2016
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 194 bits (492), Expect = 5e-48
Identities = 101/191 (52%), Positives = 128/191 (67%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TA
Sbjct: 408 YFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTA 467
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFS L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQRVR+F
Sbjct: 468 IFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQRVRNF 526
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ H
Sbjct: 527 YTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVH 586
Query: 542 FYTSVLGVCGP 574
F L V GP
Sbjct: 587 FTRQCLVVAGP 597
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 194 bits (492), Expect = 5e-48
Identities = 101/191 (52%), Positives = 128/191 (67%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+TA
Sbjct: 1898 YFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDLTA 1957
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFS L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQRVR+F
Sbjct: 1958 IFSCLHWVTPHPQKMPKGGAQLQVEN-VDTLYELALNVQVALTELYLHGNKEEFQRVRNF 2016
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+ H
Sbjct: 2017 YTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVH 2076
Query: 542 FYTSVLGVCGP 574
F L V GP
Sbjct: 2077 FTRQCLVVAGP 2087
[9][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 117 bits (292), Expect = 8e-25
Identities = 74/193 (38%), Positives = 99/193 (51%), Gaps = 3/193 (1%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
F GE I+ TLA KK+ ITDGSDK +P +E KP +LDFLKR FL D+G + LD T I
Sbjct: 1900 FTGEVIKKTLARKKITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVMPALDRTCI 1959
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
+SSL +L S + D I L NV AL ELY D +EF +R+F+
Sbjct: 1960 YSSLLYLR---------------SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFY 2004
Query: 365 VARLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNK 535
+ RLP+ + + W C ++ TG +PA VLD + K FM + N
Sbjct: 2005 LERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANW 2064
Query: 536 AHFYTSVLGVCGP 574
+ + VCGP
Sbjct: 2065 SMPIADRIFVCGP 2077
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 116 bits (291), Expect = 1e-24
Identities = 70/191 (36%), Positives = 96/191 (50%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ LA+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 401 YFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQA 460
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I+SSLY++ P + ++++ L LN VAL ELYLH D ++F VR+F
Sbjct: 461 IYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNF 504
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C SFH Q + P L+ V KF+
Sbjct: 505 YVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALS 562
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 563 IVADRLAVAGP 573
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 116 bits (291), Expect = 1e-24
Identities = 70/191 (36%), Positives = 96/191 (50%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ LA+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 675 YFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQA 734
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I+SSLY++ P + ++++ L LN VAL ELYLH D ++F VR+F
Sbjct: 735 IYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNF 778
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C SFH Q + P L+ V KF+
Sbjct: 779 YVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALS 836
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 837 IVADRLAVAGP 847
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 116 bits (291), Expect = 1e-24
Identities = 70/191 (36%), Positives = 96/191 (50%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ LA+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 1887 YFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQA 1946
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I+SSLY++ P + ++++ L LN VAL ELYLH D ++F VR+F
Sbjct: 1947 IYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQFTAVRNF 1990
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C SFH Q + P L+ V KF+
Sbjct: 1991 YVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALS 2048
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 2049 IVADRLAVAGP 2059
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 116 bits (290), Expect = 1e-24
Identities = 70/191 (36%), Positives = 94/191 (49%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ LA KV ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 675 YFNGEQIKTILARYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQA 734
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I+SSLY++ P + +++ L LN VAL ELYLH D ++F VR+F
Sbjct: 735 IYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNF 778
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C SFH Q + P L+ V KF+
Sbjct: 779 YVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALS 836
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 837 IVADRLAVAGP 847
[14][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 116 bits (290), Expect = 1e-24
Identities = 69/191 (36%), Positives = 96/191 (50%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ TLA+ ++ ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 401 YFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQA 460
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I+SSLY++ P + +++ L LN VAL ELYLH D ++F VR+F
Sbjct: 461 IYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNF 504
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C SFH Q + P L+ V KF+
Sbjct: 505 YVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAPATALS 562
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 563 IVADRLAVAGP 573
[15][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 115 bits (289), Expect = 2e-24
Identities = 70/192 (36%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNG+ I+ T+A+ +V ITDGSDK +PT+ KP LDFLKR F D G + APLD TAI
Sbjct: 1597 FNGDVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVYAPLDKTAI 1656
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
+SSL+W+ DV+ L N AL+E++ H D EF +RSF+
Sbjct: 1657 YSSLHWVAGRGQ---------------DVMSALKDNARSALIEMWAHQDKAEFVELRSFY 1701
Query: 365 VARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH- 541
V+++P D TW FH +QQ G + + P + ++ + + K M ++ G + H
Sbjct: 1702 VSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQDHL 1759
Query: 542 -FYTSVLGVCGP 574
+ + V GP
Sbjct: 1760 IYVQPRIAVSGP 1771
[16][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 115 bits (288), Expect = 2e-24
Identities = 70/191 (36%), Positives = 95/191 (49%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNG+ I+ LA+ KV ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 675 YFNGDRIKEVLAKFKVTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVLAPLDLQA 734
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
IFSSLY++ P + + + L LN VAL ELYLHND ++F VR+F
Sbjct: 735 IFSSLYYINP----------------QGNTLNSLFLNAQVALRELYLHNDIEQFTAVRNF 778
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C +FH Q + P L+ V KF+
Sbjct: 779 YVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAPSTALS 836
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 837 IVADRLAVAGP 847
[17][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 115 bits (287), Expect = 3e-24
Identities = 70/191 (36%), Positives = 94/191 (49%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+FNGE I+ LA KV ITDGSDK++P + KP +LDFLKR F G + APLD+ A
Sbjct: 675 YFNGEQIKTILANIKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQA 734
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I+SSLY++ P + +++ L LN VAL ELYLH D ++F VR+F
Sbjct: 735 IYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQFTAVRNF 778
Query: 362 FVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+V ++ W C SFH Q + P L+ V KF+
Sbjct: 779 YVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALS 836
Query: 542 FYTSVLGVCGP 574
L V GP
Sbjct: 837 IVLDRLAVAGP 847
[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 111 bits (278), Expect = 4e-23
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 1/191 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F G+A+++ +A+ V ITDG DK TI +P EL+FLKR F++ G+I APL+ +
Sbjct: 1851 YFTGDALKMQMAKLGVTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLS 1910
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
I SSL ++ S D++++L+ NVN AL+ELYLH D F+ VR+F
Sbjct: 1911 IMSSLVYIR---------------SDGSDMLQKLLDNVNTALVELYLHGDRTYFESVRAF 1955
Query: 362 FVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 538
+ +LP + TW ESFH Q++G + P +++ G F F + +
Sbjct: 1956 YFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLIEISHGAAFASFTQQAGTELEK 2015
Query: 539 HFYTSVLGVCG 571
H L + G
Sbjct: 2016 HDICPGLSIAG 2026
[19][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 105 bits (261), Expect = 3e-21
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 1/190 (0%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
F G+A++ +A V ITDG DK TI +P EL+FLKR K + G+I APL+ +I
Sbjct: 1853 FTGDALKAEMANVGVTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIYAPLEKLSI 1912
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
SSL ++ S D++++LV NVN AL+EL+LH D + F VR+F+
Sbjct: 1913 MSSLVYIR---------------SDGSDMLQKLVDNVNTALVELFLHQDKEYFDSVRNFY 1957
Query: 365 VARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ +LP + TW ++FH Q +G P +++ GV F F+ + H
Sbjct: 1958 LEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELERH 2017
Query: 542 FYTSVLGVCG 571
L + G
Sbjct: 2018 DICPGLAISG 2027
[20][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 103 bits (256), Expect = 1e-20
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 1/190 (0%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
F G+A++ +A V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I
Sbjct: 392 FTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSI 451
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
SSL ++ S D++++LV NVN AL+ELYLH D + + VR F+
Sbjct: 452 MSSLVYIR---------------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFY 496
Query: 365 VARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ +LP + TW + FH Q +G P +++ G F F+ + + H
Sbjct: 497 LEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERH 556
Query: 542 FYTSVLGVCG 571
L + G
Sbjct: 557 DICPGLAISG 566
[21][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 103 bits (256), Expect = 1e-20
Identities = 64/190 (33%), Positives = 96/190 (50%), Gaps = 1/190 (0%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
F G+A++ +A V ITDG DK TI +P EL+FLKR F K + G+I APL+ +I
Sbjct: 1851 FTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIYAPLEKLSI 1910
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
SSL ++ S D++++LV NVN AL+ELYLH D + + VR F+
Sbjct: 1911 MSSLVYIR---------------SDGSDMLQKLVDNVNTALVELYLHQDREYSESVRDFY 1955
Query: 365 VARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH 541
+ +LP + TW + FH Q +G P +++ G F F+ + + H
Sbjct: 1956 LEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELERH 2015
Query: 542 FYTSVLGVCG 571
L + G
Sbjct: 2016 DICPGLAISG 2025
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 99.4 bits (246), Expect = 2e-19
Identities = 68/193 (35%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++
Sbjct: 393 FNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASV 452
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
++SL +T H L NV+ AL+ELYLH + F +R F+
Sbjct: 453 YTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY 497
Query: 365 VARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHF 544
R +W +FH Q +G+ P + D VD + + +A F
Sbjct: 498 --RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAF 553
Query: 545 YTSV---LGVCGP 574
T + + +CGP
Sbjct: 554 STHLGREIYICGP 566
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 99.4 bits (246), Expect = 2e-19
Identities = 68/193 (35%), Positives = 95/193 (49%), Gaps = 3/193 (1%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F KL+ G + APLD+ ++
Sbjct: 1780 FNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVYAPLDLASV 1839
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
++SL +T H L NV+ AL+ELYLH + F +R F+
Sbjct: 1840 YTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETWFNHLRDFY 1884
Query: 365 VARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHF 544
R +W +FH Q +G+ P + D VD + + +A F
Sbjct: 1885 --RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAF 1940
Query: 545 YTSV---LGVCGP 574
T + + +CGP
Sbjct: 1941 STHLGREIYICGP 1953
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 72.0 bits (175), Expect = 3e-11
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G I+ +A + ITDG+DK + T+E KP L+FLKR F + G++ APLD T+
Sbjct: 1830 FFDGPVIKREMASVGITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTS 1889
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDSKEFQRVRS 358
+++ L++L + F + NV L E+ LH N +EF RVR+
Sbjct: 1890 MYTRLFYLPLALMAFIPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRN 1936
Query: 359 FFVARLP 379
F+V++ P
Sbjct: 1937 FYVSKAP 1943
[25][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 61.2 bits (147), Expect = 5e-08
Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 1/158 (0%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNG+ ++ +A V ITDG DK PT+E +P + DFLKR F++ V AP + +++
Sbjct: 429 FNGKLLKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWDAPEERSSL 488
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSFF 364
++ L++++ Y+G + VNV + ELY+H+ KE +R
Sbjct: 489 YTQLHYVSTKMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKEASDLRRKA 532
Query: 365 VARLPLLV-DQFRTWAFCESFHSSQQTGMLRHDPASVL 475
+ LP L + T ++F++ Q+ G + V+
Sbjct: 533 LRDLPWLSRSKIGTMENVQAFYAMQRAGYRMDESIDVI 570
[26][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 59.7 bits (143), Expect = 2e-07
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
++S L++++ +++ E ++N+ L ELYLH+ +E +++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRK 1647
Query: 362 FVARLPLLVD-QFRTWAFCESFHSSQQ 439
++R+ L T A E FHS Q+
Sbjct: 1648 ALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[27][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 58.9 bits (141), Expect = 3e-07
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Frame = +2
Query: 5 FNGEAIRVTLAEKK-VKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMT 178
FNG I+ + E+ +KITDG+DK +P I+ +P + +FLKR + K G+ +APL T
Sbjct: 1956 FNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGLYRAPLVET 2015
Query: 179 AIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 358
+IFS L ++ + Y + +++ NV +L E LH R+
Sbjct: 2016 SIFSCLRYV-----------RLQNYDWQAPLLQ----NVQGSLYEASLHGPEMH-DRIYK 2059
Query: 359 FFVARLPLLVDQFRTWAF--CESFHSSQQTGMLRHDPASV-LDHMSGVDFKKFMHVSEQG 529
F P V++ + + C + + + G PAS + H+ + +S+
Sbjct: 2060 HFAMHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPASAQMGHVFSQQ-TEIQELSQPQ 2118
Query: 530 NKAHFYT--SVLGVCGP 574
N + + VCGP
Sbjct: 2119 NPMRCFKLHEKIHVCGP 2135
[28][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 58.5 bits (140), Expect = 4e-07
Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
++S L++++ +++ E ++N+ L ELYLH+ + Q +R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHSPEEACQ-LRRR 1647
Query: 362 FVARLPLLVD-QFRTWAFCESFHSSQQ 439
++R+ L T A E FHS Q+
Sbjct: 1648 ALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[29][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 58.2 bits (139), Expect = 5e-07
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 403 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 462
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
++S L++++ +++ E ++N+ L ELYLH+ +E +R+R
Sbjct: 463 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRK 506
Query: 362 FVARLPLLVD-QFRTWAFCESFHSSQQ 439
++ + L T A E FHS Q+
Sbjct: 507 ALSCIEWLQKADVPTIAQIEEFHSMQR 533
[30][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 58.2 bits (139), Expect = 5e-07
Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 1543 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 1602
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
++S L++++ +++ E ++N+ L ELYLH+ +E +R+R
Sbjct: 1603 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLRRK 1646
Query: 362 FVARLPLLVD-QFRTWAFCESFHSSQQ 439
++ + L T A E FHS Q+
Sbjct: 1647 ALSCIEWLQKADVPTIAQIEEFHSMQR 1673
[31][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 57.8 bits (138), Expect = 6e-07
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G ++ LA + ITDG DK + T++ + + DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
++S L++++ +++ E ++N+ L ELYLH+ +E +++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRK 1647
Query: 362 FVARLPLLVD-QFRTWAFCESFHSSQQ 439
++R+ L T A E FHS Q+
Sbjct: 1648 ALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[32][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 57.8 bits (138), Expect = 6e-07
Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = +2
Query: 2 WFNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTA 181
+F+G ++ LA + ITDG DK + T++ + + DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 182 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRSF 361
++S L++++ +++ E ++N+ L ELYLH+ +E +++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRK 1647
Query: 362 FVARLPLLVD-QFRTWAFCESFHSSQQ 439
++R+ L T A E FHS Q+
Sbjct: 1648 ALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[33][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 57.0 bits (136), Expect = 1e-06
Identities = 34/108 (31%), Positives = 59/108 (54%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ V +P + +++
Sbjct: 1552 FNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEKSSL 1610
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 328
++ L+++ + +D E ++N+N L ELY+H+
Sbjct: 1611 WAQLHYVNTT---------------SLDKQEAYLVNLNNVLKELYMHS 1643
[34][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 56.6 bits (135), Expect = 1e-06
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Frame = +2
Query: 5 FNGEAIRVTLAEKK-VKITDGSDKDAPTIEPKPFWELDFLKRKFLK-LDTGVIQAPLDMT 178
FNG AI+ + E+ +KITDG+DK +P I +P + +FLKR + K G+ +APL T
Sbjct: 1957 FNGNAIKAYMKEELGIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGLYRAPLVET 2016
Query: 179 AIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDSKEFQRVRS 358
+I+S L ++ + Y + +++ NV +L E LH R+
Sbjct: 2017 SIYSCLRYV-----------RLQNYDWQAPLLQ----NVQGSLYEASLHGPDMH-ARIYK 2060
Query: 359 FFVARLPLLVDQFRTWAF--CESFHSSQQTGMLRHDPAS 469
F P V++ + + C + + + G PAS
Sbjct: 2061 HFATHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPAS 2099
[35][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 54.3 bits (129), Expect = 7e-06
Identities = 32/108 (29%), Positives = 59/108 (54%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++
Sbjct: 405 FNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSL 463
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 328
++ L+++ + +D E ++N+N L ELY+++
Sbjct: 464 WAQLHYVNTT---------------NLDKQEAYLVNLNNVLKELYMYS 496
[36][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 54.3 bits (129), Expect = 7e-06
Identities = 32/108 (29%), Positives = 59/108 (54%)
Frame = +2
Query: 5 FNGEAIRVTLAEKKVKITDGSDKDAPTIEPKPFWELDFLKRKFLKLDTGVIQAPLDMTAI 184
FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P + +++
Sbjct: 1552 FNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEKSSL 1610
Query: 185 FSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHN 328
++ L+++ + +D E ++N+N L ELY+++
Sbjct: 1611 WAQLHYVNTT---------------NLDKQEAYLVNLNNVLKELYMYS 1643