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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 316 bits (809), Expect = 9e-85
Identities = 144/192 (75%), Positives = 166/192 (86%)
Frame = +3
Query: 3 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTW 182
H Q+AS + G VDV+EEL+LNVNVALMELYLHNDP+EF RVR F++ LPL QFRTW
Sbjct: 475 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 534
Query: 183 AFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKP 362
AFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP
Sbjct: 535 AFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKP 594
Query: 363 CEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLR 542
E DFIVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+P+LR
Sbjct: 595 QENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILR 654
Query: 543 EQLEAGKRIIFM 578
Q+EAGKR++FM
Sbjct: 655 AQIEAGKRLVFM 666
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 316 bits (809), Expect = 9e-85
Identities = 144/192 (75%), Positives = 166/192 (86%)
Frame = +3
Query: 3 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTW 182
H Q+AS + G VDV+EEL+LNVNVALMELYLHNDP+EF RVR F++ LPL QFRTW
Sbjct: 1915 HASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLATGQFRTW 1974
Query: 183 AFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKP 362
AFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKAHFYT +LGV GPHYKP
Sbjct: 1975 AFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKAHFYTEMLGVAGPHYKP 2034
Query: 363 CEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLR 542
E DFIVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+P+LR
Sbjct: 2035 QENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIHPILR 2094
Query: 543 EQLEAGKRIIFM 578
Q+EAGKR++FM
Sbjct: 2095 AQIEAGKRLVFM 2106
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 299 bits (765), Expect = 1e-79
Identities = 144/192 (75%), Positives = 162/192 (84%)
Frame = +3
Query: 3 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTW 182
H QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTW
Sbjct: 475 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 534
Query: 183 AFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKP 362
AFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP
Sbjct: 535 AFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKP 594
Query: 363 CEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLR 542
E DFIVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI LLR
Sbjct: 595 QEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLR 654
Query: 543 EQLEAGKRIIFM 578
EQ+EAGKR+IFM
Sbjct: 655 EQIEAGKRLIFM 666
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 299 bits (765), Expect = 1e-79
Identities = 144/192 (75%), Positives = 162/192 (84%)
Frame = +3
Query: 3 HTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTW 182
H QK S + GEVDVIEEL+LNVNVALMELYLHND EFQRVR F+ RLPL+V Q RTW
Sbjct: 1917 HESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAEFQRVRGFYAQRLPLMVSQLRTW 1976
Query: 183 AFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKP 362
AFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKAHFYT +LGV GPHYKP
Sbjct: 1977 AFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKAHFYTEMLGVSGPHYKP 2036
Query: 363 CEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLR 542
E DFIVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI LLR
Sbjct: 2037 QEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLITGLLR 2096
Query: 543 EQLEAGKRIIFM 578
EQ+EAGKR+IFM
Sbjct: 2097 EQIEAGKRLIFM 2108
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 275 bits (702), Expect = 2e-72
Identities = 125/189 (66%), Positives = 154/189 (81%)
Frame = +3
Query: 12 QKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 191
+KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFC
Sbjct: 477 EKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFC 536
Query: 192 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 371
E+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 537 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 596
Query: 372 DFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQL 551
DF+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y LL EQ+
Sbjct: 597 DFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQI 655
Query: 552 EAGKRIIFM 578
E GKR++FM
Sbjct: 656 EQGKRLVFM 664
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 275 bits (702), Expect = 2e-72
Identities = 125/189 (66%), Positives = 154/189 (81%)
Frame = +3
Query: 12 QKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 191
+KA Y GEVDV+EEL++NVNV+L+ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFC
Sbjct: 1903 EKACDYLGEVDVVEELIINVNVSLVELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFC 1962
Query: 192 ESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEE 371
E+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KAHFYT +LGVCGPHYKP E+
Sbjct: 1963 EAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKAHFYTPILGVCGPHYKPKEQ 2022
Query: 372 DFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQL 551
DF+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y LL EQ+
Sbjct: 2023 DFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACYKLLCEQI 2081
Query: 552 EAGKRIIFM 578
E GKR++FM
Sbjct: 2082 EQGKRLVFM 2090
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 166 bits (421), Expect = 9e-40
Identities = 84/179 (46%), Positives = 114/179 (63%)
Frame = +3
Query: 39 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 218
VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QT
Sbjct: 494 VDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQT 553
Query: 219 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 398
GM + PA +D G +F +FMH S+ GN+ HF L V GP YKP + +VST PL
Sbjct: 554 GMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPL 613
Query: 399 KMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
K G G VP++ G GIG LPT WV F + + L +A GY I+ +R +E+GK ++F
Sbjct: 614 KQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVF 672
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 166 bits (421), Expect = 9e-40
Identities = 84/179 (46%), Positives = 114/179 (63%)
Frame = +3
Query: 39 VDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQT 218
VD + EL LNV VAL ELYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QT
Sbjct: 1984 VDTLYELALNVQVALTELYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQT 2043
Query: 219 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 398
GM + PA +D G +F +FMH S+ GN+ HF L V GP YKP + +VST PL
Sbjct: 2044 GMEAYQPAKEIDLDVGQEFARFMHTSDIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPL 2103
Query: 399 KMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
K G G VP++ G GIG LPT WV F + + L +A GY I+ +R +E+GK ++F
Sbjct: 2104 KQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVF 2162
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 90.9 bits (224), Expect = 6e-17
Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 6/184 (3%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
DV+ L N AL+E++ H D EF +RSF+V+++P D TW FH +QQ G
Sbjct: 1669 DVMSALKDNARSALIEMWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHG 1727
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVST 389
+ + P + ++ + + K M ++ G + H + + V GP + + C++ F+VST
Sbjct: 1728 AMPYRPQASMELLVDMHTDKKM-MANHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVST 1786
Query: 390 EPLKMG--VLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGK 563
PL G H+P++ G G+GR+P+++WV F + +++ + +IY + AGK
Sbjct: 1787 LPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY----DAYAAGK 1839
Query: 564 RIIF 575
IIF
Sbjct: 1840 TIIF 1843
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 85.1 bits (209), Expect = 4e-15
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQT 218
D++++LV NVN AL+EL+LH D + F VR+F++ +LP + TW ++FH Q +
Sbjct: 1925 DMLQKLVDNVNTALVELFLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLS 1984
Query: 219 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 398
G P +++ GV F F+ + H L + G Y +E+ ++S L
Sbjct: 1985 GESNWKPQGLIEISHGVGFASFVQQDGTELERHDICPGLAISGARYIAKKEEILMSLSSL 2044
Query: 399 KMGVLGEH-VPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRII 572
G + H + +K G GIGRLP+ K+S L ++ L ++ LE K ++
Sbjct: 2045 LPGDVNAHKLELKCGDGIGRLPS--------KASVLAQRNPGIVMRLCKQALEEKKTLV 2095
[11][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 81.3 bits (199), Expect = 5e-14
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQT 218
D++++L+ NVN AL+ELYLH D F+ VR+F+ +LP + TW ESFH Q++
Sbjct: 1924 DMLQKLLDNVNTALVELYLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKS 1983
Query: 219 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 398
G + P +++ G F F + + H L + G Y E + ++S +
Sbjct: 1984 GESGYKPQGLIEISHGAAFASFTQQAGTELEKHDICPGLSIAGTKYIATENEIVLSLSSV 2043
Query: 399 KMGVLGE-HVPIKYGGGIGRLPTKNWVLNFGK 491
G + + G GIGRLP+K +LN K
Sbjct: 2044 LPGDRNVFKLDLPCGDGIGRLPSKCSILNLRK 2075
[12][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 79.0 bits (193), Expect = 3e-13
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQT 218
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +
Sbjct: 464 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 523
Query: 219 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 398
G P +++ G F F+ + + H L + G Y EE+ ++S L
Sbjct: 524 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 583
Query: 399 KMG-VLGEHVPIKYGGGIGRLPTKNWVLN 482
G + + +K G GIGRLP+K VL+
Sbjct: 584 LPGDINAVKLTLKCGDGIGRLPSKASVLS 612
[13][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 79.0 bits (193), Expect = 3e-13
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQT 218
D++++LV NVN AL+ELYLH D + + VR F++ +LP + TW + FH Q +
Sbjct: 1923 DMLQKLVDNVNTALVELYLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLS 1982
Query: 219 GMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPL 398
G P +++ G F F+ + + H L + G Y EE+ ++S L
Sbjct: 1983 GESGWKPQGLIEVSHGASFASFVQQNGTELERHDICPGLAISGSKYIAREEEILMSLSSL 2042
Query: 399 KMG-VLGEHVPIKYGGGIGRLPTKNWVLN 482
G + + +K G GIGRLP+K VL+
Sbjct: 2043 LPGDINAVKLTLKCGDGIGRLPSKASVLS 2071
[14][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 72.0 bits (175), Expect = 3e-11
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 2/180 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
+ + L LN VAL ELYLHND ++F VR+F+VT++ W C +FH Q +
Sbjct: 747 NTLNSLFLNAQVALRELYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQ 806
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTS 864
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
LK G + P+ YG G+G+ T+ + + K + +R+ GK I+F
Sbjct: 865 LKANEGGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH-------MRDSWNEGKTIVF 917
[15][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 68.9 bits (167), Expect = 3e-10
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 473 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 532
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 533 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 590
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
LK G + P+ YG G G+ T+ + + + LK+ + +R+ GK I+F
Sbjct: 591 LKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVF 643
[16][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 68.9 bits (167), Expect = 3e-10
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
LK G + P+ YG G G+ T+ + + + LK+ + +R+ GK I+F
Sbjct: 865 LKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVF 917
[17][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 68.9 bits (167), Expect = 3e-10
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
++++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 1959 NILKSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 2018
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 2019 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 2076
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
LK G + P+ YG G G+ T+ + + + LK+ + +R+ GK I+F
Sbjct: 2077 LKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVF 2129
[18][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 67.8 bits (164), Expect = 6e-10
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTK 467
LK G + P+ YG G G+ T+
Sbjct: 865 LKANEGGLYFPVDYGEGTGQQATE 888
[19][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 67.8 bits (164), Expect = 6e-10
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 747 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQ 806
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 807 WKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTS 864
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTK 467
LK G + P+ YG G G+ T+
Sbjct: 865 LKANEGGLYFPVDYGEGTGQQATE 888
[20][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 67.8 bits (164), Expect = 6e-10
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 2/180 (1%)
Frame = +3
Query: 42 DVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 221
+++ L LN VAL ELYLH D ++F VR+F+V ++ W C SFH Q +
Sbjct: 473 NILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQ 532
Query: 222 MLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEP 395
P L+ V KF+ L V GP ++ + D +VS
Sbjct: 533 WKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWRNKDPDKYLLVSLTS 590
Query: 396 LKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
LK G + P+ YG G G+ T+ + + + LK+ + +R+ GK I+F
Sbjct: 591 LKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VRHMRDSWNEGKTIVF 643
[21][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 64.7 bits (156), Expect = 5e-09
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 8/178 (4%)
Frame = +3
Query: 66 NVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 245
NV+ AL+ELYLH + F +R F+ R +W +FH Q +G+ P
Sbjct: 473 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 530
Query: 246 VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGV 410
+ D VD + + +A F T + + +CGP + E F+VST PL+
Sbjct: 531 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 588
Query: 411 LGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
G H I+Y G+GRLP+++WV F S+ A+ +R+ +GK I F
Sbjct: 589 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYF 639
[22][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 64.7 bits (156), Expect = 5e-09
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 8/178 (4%)
Frame = +3
Query: 66 NVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPAS 245
NV+ AL+ELYLH + F +R F+ R +W +FH Q +G+ P
Sbjct: 1860 NVHNALLELYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQ 1917
Query: 246 VLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCGPHY--KPCEEDFIVSTEPLKMGV 410
+ D VD + + +A F T + + +CGP + E F+VST PL+
Sbjct: 1918 MFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICGPKWCVSDPEHQFVVSTTPLRSAD 1975
Query: 411 LGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPLLREQLEAGKRIIF 575
G H I+Y G+GRLP+++WV F S+ A+ +R+ +GK I F
Sbjct: 1976 RGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE-------IRKAHASGKAIYF 2026
[23][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 63.9 bits (154), Expect = 8e-09
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Frame = +3
Query: 30 SGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESF 200
S + D I L NV AL ELY D +EF +R+F++ RLP+ + + W C
Sbjct: 1968 SADCDPIPLLHQNVQNALQELYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEH 2027
Query: 201 HSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYKPCEEDFI 380
++ TG +PA VLD + K FM + N + + VCGP + +
Sbjct: 2028 WRARYTGCPSDNPAGVLDMLVDPRCKSFMLPAGPANWSMPIADRIFVCGPKFSASGPSYT 2087
Query: 381 VSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNF 485
+ L G G + + G +PT +V +F
Sbjct: 2088 LCFNRLAAGETGVQIKPVHAATQGAMPTAKFVESF 2122