BB905807 ( RCE03938 )

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[1][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
           RepID=B9S0J0_RICCO
          Length = 548

 Score =  120 bits (301), Expect = 7e-26
 Identities = 55/83 (66%), Positives = 74/83 (89%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           + V+KQLMR+HVL++LN L P+ER+IIRLR+G EDG+++SLSEIG +FGLS+ER+ QLE+
Sbjct: 466 LCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLES 525

Query: 357 RALYRLKKCLVSQGLDAYADKLI 289
           RALY+LK+CL S GL+AYAD L+
Sbjct: 526 RALYKLKQCLASHGLEAYADLLV 548

[2][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
          Length = 535

 Score =  118 bits (295), Expect = 4e-25
 Identities = 57/82 (69%), Positives = 71/82 (86%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           MSV+KQLMR+H+  +LN L  KERRIIRLRFG EDG+++SLSEIG +FGLS+ER+ QLE+
Sbjct: 453 MSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKERVRQLES 512

Query: 357 RALYRLKKCLVSQGLDAYADKL 292
           RALY+LK+C+ S GLDAYAD L
Sbjct: 513 RALYKLKQCVGSHGLDAYADLL 534

[3][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
           Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
          Length = 487

 Score =  116 bits (291), Expect = 1e-24
 Identities = 58/83 (69%), Positives = 70/83 (84%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           MSV KQLMR HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+
Sbjct: 405 MSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLES 464

Query: 357 RALYRLKKCLVSQGLDAYADKLI 289
           RALYRLK+ + S GL AYAD L+
Sbjct: 465 RALYRLKQNMNSHGLHAYADLLV 487

[4][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
           RepID=Q9LD95_ARATH
          Length = 547

 Score =  116 bits (291), Expect = 1e-24
 Identities = 58/83 (69%), Positives = 70/83 (84%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           MSV KQLMR HV N+LN L PKERRII+LRFG + G++RSLSEIGEI+GLS+ER+ QLE+
Sbjct: 465 MSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLES 524

Query: 357 RALYRLKKCLVSQGLDAYADKLI 289
           RALYRLK+ + S GL AYAD L+
Sbjct: 525 RALYRLKQNMNSHGLHAYADLLV 547

[5][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
           RepID=UPI0001983B83
          Length = 561

 Score =  109 bits (272), Expect = 2e-22
 Identities = 53/83 (63%), Positives = 68/83 (81%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           +SV+KQLMR+HV N+L+ L PKERRIIRLRFG  DG  R+LSEIG +FG S+ER+ QLE 
Sbjct: 479 VSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQ 538

Query: 357 RALYRLKKCLVSQGLDAYADKLI 289
           RAL++LK+CL S GL++Y D L+
Sbjct: 539 RALHKLKQCLSSHGLESYTDLLV 561

[6][TOP]
>UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PT61_VITVI
          Length = 284

 Score =  109 bits (272), Expect = 2e-22
 Identities = 53/83 (63%), Positives = 68/83 (81%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           +SV+KQLMR+HV N+L+ L PKERRIIRLRFG  DG  R+LSEIG +FG S+ER+ QLE 
Sbjct: 202 VSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQ 261

Query: 357 RALYRLKKCLVSQGLDAYADKLI 289
           RAL++LK+CL S GL++Y D L+
Sbjct: 262 RALHKLKQCLSSHGLESYTDLLV 284

[7][TOP]
>UniRef100_Q84LK8 Os08g0242800 protein n=1 Tax=Oryza sativa Japonica Group
           RepID=Q84LK8_ORYSJ
          Length = 572

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 41/82 (50%), Positives = 56/82 (68%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           +SV + +MR+ V + L  L P+E+ II  RFG  DGE ++L  IG++FGLS+ERI QL+N
Sbjct: 490 LSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQN 549

Query: 357 RALYRLKKCLVSQGLDAYADKL 292
           RAL +LK+    QG D Y D L
Sbjct: 550 RALEKLKRSASLQGFDVYFDLL 571

[8][TOP]
>UniRef100_B8BC85 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
           RepID=B8BC85_ORYSI
          Length = 537

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 41/82 (50%), Positives = 56/82 (68%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           +SV + +MR+ V + L  L P+E+ II  RFG  DGE ++L  IG++FGLS+ERI QL+N
Sbjct: 455 LSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQN 514

Query: 357 RALYRLKKCLVSQGLDAYADKL 292
           RAL +LK+    QG D Y D L
Sbjct: 515 RALEKLKRSASLQGFDVYFDLL 536

[9][TOP]
>UniRef100_A3BR19 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
           Group RepID=A3BR19_ORYSJ
          Length = 497

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 41/82 (50%), Positives = 56/82 (68%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           +SV + +MR+ V + L  L P+E+ II  RFG  DGE ++L  IG++FGLS+ERI QL+N
Sbjct: 415 LSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERIRQLQN 474

Query: 357 RALYRLKKCLVSQGLDAYADKL 292
           RAL +LK+    QG D Y D L
Sbjct: 475 RALEKLKRSASLQGFDVYFDLL 496

[10][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9L1K5_THERP
          Length = 340

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 32/75 (42%), Positives = 53/75 (70%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           + LMRR +  +L  L P+ER +++LR+G  DGE R+L+E+G++ G+SRER+ Q+EN AL 
Sbjct: 264 ESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALR 323

Query: 345 RLKKCLVSQGLDAYA 301
           +L++    +  + YA
Sbjct: 324 KLRRIARERLAEYYA 338

[11][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
           RepID=A9RXT3_PHYPA
          Length = 579

 Score = 74.3 bits (181), Expect = 6e-12
 Identities = 35/79 (44%), Positives = 55/79 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           ++ KQLMR+ +  VL  L P+ER ++RLRFG +DG  ++L EIG+IF ++RERI Q+E +
Sbjct: 495 AIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAK 554

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           A+ +L++   +  L  Y D
Sbjct: 555 AMRKLRQPSRNSILREYLD 573

[12][TOP]
>UniRef100_A7NG03 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NG03_ROSCS
          Length = 541

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 35/79 (44%), Positives = 55/79 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S Q++R  V  VLN+L  +ERR+++LRFG EDG  R+L E+G+ FG++RERI Q+E +
Sbjct: 463 AASHQMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVK 522

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+   + + L  Y +
Sbjct: 523 ALRKLRHPRLGKKLRDYLE 541

[13][TOP]
>UniRef100_A5UQ16 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5UQ16_ROSS1
          Length = 541

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 35/79 (44%), Positives = 55/79 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S Q++R  V  VLN+L  +ERR+++LRFG EDG  R+L E+G+ FG++RERI Q+E +
Sbjct: 463 AASHQMLREQVEQVLNQLTERERRVLQLRFGLEDGHSRTLEEVGKEFGVTRERIRQIEVK 522

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+   + + L  Y +
Sbjct: 523 ALRKLRHPRLGKKLRDYLE 541

[14][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
           20745 RepID=C4CIZ0_9CHLR
          Length = 390

 Score = 73.6 bits (179), Expect = 1e-11
 Identities = 36/77 (46%), Positives = 53/77 (68%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           S++L++  + + L+KL  +ERRII LRFG EDG+ R+L E+G  FG++RERI Q+E +AL
Sbjct: 314 SQELLKHQISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQIEAKAL 373

Query: 348 YRLKKCLVSQGLDAYAD 298
            +L+    S  L  Y D
Sbjct: 374 RKLRHPTYSHRLRGYLD 390

[15][TOP]
>UniRef100_Q2RKT5 RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC
           39073 RepID=Q2RKT5_MOOTA
          Length = 361

 Score = 73.2 bits (178), Expect = 1e-11
 Identities = 35/79 (44%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L+R  +  VLN L P+E+R++RLRFG +DG  R+L E+G+ FG++RERI Q+E +
Sbjct: 283 AASFMLLREQLEEVLNSLTPREKRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAK 342

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  Y +
Sbjct: 343 ALRKLRHPSRSKKLKDYLE 361

[16][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
           RepID=Q10UV2_TRIEI
          Length = 386

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + +VLN L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 309 VSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 368

Query: 351 LYRLK 337
           L +L+
Sbjct: 369 LRKLR 373

[17][TOP]
>UniRef100_A8SFN0 RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii
           M21/2 RepID=A8SFN0_9FIRM
          Length = 360

 Score = 72.8 bits (177), Expect = 2e-11
 Identities = 35/77 (45%), Positives = 54/77 (70%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           +QL+RR +L+VL  L P+E R+I LRFG EDG  R+L E+G+ F ++RER+ Q+E +AL 
Sbjct: 284 RQLLRRELLHVLKSLTPREERVITLRFGLEDGRARTLEELGKEFNVTRERVRQIEAKALR 343

Query: 345 RLKKCLVSQGLDAYADK 295
           +L+    ++ L  Y D+
Sbjct: 344 KLRHPSRAKLLRDYLDE 360

[18][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
           DNA-directed RNA polymerase/ transcription factor n=1
           Tax=Vitis vinifera RepID=UPI000198388B
          Length = 578

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 35/74 (47%), Positives = 50/74 (67%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           KQ MR  +  VLN L P+E+++IR R+G EDG  ++L EIGE+ G+SRERI Q+E+ A  
Sbjct: 502 KQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFR 561

Query: 345 RLKKCLVSQGLDAY 304
           +LK    ++ L  Y
Sbjct: 562 KLKNKRRTKHLQQY 575

[19][TOP]
>UniRef100_Q3Z904 RNA polymerase sigma factor n=1 Tax=Dehalococcoides ethenogenes 195
           RepID=Q3Z904_DEHE1
          Length = 520

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 34/79 (43%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S+QL++  +  VL  L P+ERR+++LRFG EDG  R+L E+G+ F ++RERI Q+E +
Sbjct: 442 AASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAK 501

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  Y +
Sbjct: 502 ALRKLRHPSRSRKLKDYLE 520

[20][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7KDV7_CYAP7
          Length = 376

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 299 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 358

Query: 351 LYRLK 337
           L +L+
Sbjct: 359 LRKLR 363

[21][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WS32_CYAA5
          Length = 416

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398

Query: 351 LYRLK 337
           L +L+
Sbjct: 399 LRKLR 403

[22][TOP]
>UniRef100_B1VYB1 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
           griseus NBRC 13350 RepID=B1VYB1_STRGG
          Length = 363

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 34/74 (45%), Positives = 51/74 (68%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G EDG  R+L EIG IFG++RERI Q+E++ L RL
Sbjct: 290 LLREHLEAVLSTLGERERKVVQLRYGLEDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 350 RDHAFADQLRGYLD 363

[23][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JGK3_MICAN
          Length = 416

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398

Query: 351 LYRLK 337
           L +L+
Sbjct: 399 LRKLR 403

[24][TOP]
>UniRef100_A5FRQ7 RNA polymerase sigma factor n=2 Tax=Dehalococcoides
           RepID=A5FRQ7_DEHSB
          Length = 520

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 34/79 (43%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S+QL++  +  VL  L P+ERR+++LRFG EDG  R+L E+G+ F ++RERI Q+E +
Sbjct: 442 AASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAK 501

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  Y +
Sbjct: 502 ALRKLRHPSRSRKLKDYLE 520

[25][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4C7J7_CROWT
          Length = 414

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 337 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 396

Query: 351 LYRLK 337
           L +L+
Sbjct: 397 LRKLR 401

[26][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
           RepID=C7QR23_CYAP0
          Length = 379

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 302 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 361

Query: 351 LYRLK 337
           L +L+
Sbjct: 362 LRKLR 366

[27][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AUJ5_9CHRO
          Length = 377

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 300 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 359

Query: 351 LYRLK 337
           L +L+
Sbjct: 360 LRKLR 364

[28][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
           RepID=B1PVV9_MICAE
          Length = 416

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398

Query: 351 LYRLK 337
           L +L+
Sbjct: 399 LRKLR 403

[29][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YBI5_MICAE
          Length = 416

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398

Query: 351 LYRLK 337
           L +L+
Sbjct: 399 LRKLR 403

[30][TOP]
>UniRef100_A8CRQ1 RNA polymerase sigma factor n=1 Tax=Dehalococcoides sp. VS
           RepID=A8CRQ1_9CHLR
          Length = 520

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 34/79 (43%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S+QL++  +  VL  L P+ERR+++LRFG EDG  R+L E+G+ F ++RERI Q+E +
Sbjct: 442 AASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAK 501

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  Y +
Sbjct: 502 ALRKLRHPSRSRKLKDYLE 520

[31][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3ISY9_9CHRO
          Length = 416

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398

Query: 351 LYRLK 337
           L +L+
Sbjct: 399 LRKLR 403

[32][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
          Length = 525

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 34/74 (45%), Positives = 52/74 (70%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           K L++  + NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL 
Sbjct: 440 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 499

Query: 345 RLKKCLVSQGLDAY 304
           +LK+   +Q L  Y
Sbjct: 500 KLKQPSRNQVLQEY 513

[33][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
           Tax=Vitis vinifera RepID=A7PSL8_VITVI
          Length = 235

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 35/74 (47%), Positives = 50/74 (67%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           KQ MR  +  VLN L P+E+++IR R+G EDG  ++L EIGE+ G+SRERI Q+E+ A  
Sbjct: 159 KQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFR 218

Query: 345 RLKKCLVSQGLDAY 304
           +LK    ++ L  Y
Sbjct: 219 KLKNKRRTKHLQQY 232

[34][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
           RepID=RPOD_SYNY3
          Length = 425

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 348 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 407

Query: 351 LYRLK 337
           L +L+
Sbjct: 408 LRKLR 412

[35][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
           RepID=RPOD_MICAE
          Length = 416

 Score = 72.4 bits (176), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 339 VSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 398

Query: 351 LYRLK 337
           L +L+
Sbjct: 399 LRKLR 403

[36][TOP]
>UniRef100_B9KZ85 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
           RepID=B9KZ85_THERP
          Length = 369

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 36/77 (46%), Positives = 54/77 (70%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           S+QL+R+ +   L++L  +ERRII LR+G EDG+ R+L E+G  FG++RERI Q+E +AL
Sbjct: 293 SQQLLRQQLEEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKAL 352

Query: 348 YRLKKCLVSQGLDAYAD 298
            +L+    S+ L  Y D
Sbjct: 353 RKLRHPSCSRFLRGYLD 369

[37][TOP]
>UniRef100_B5GE88 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. SPB74
           RepID=B5GE88_9ACTO
          Length = 338

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 33/79 (41%), Positives = 55/79 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S +  L+RRH+ +VL+ L  +ER++++LR+G +DG  R+L EIG +FG++RERI Q+E +
Sbjct: 260 SAALLLLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAK 319

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            L +L+  + +  L  Y D
Sbjct: 320 TLAKLRSHVFADQLRGYLD 338

[38][TOP]
>UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces
           roseosporus NRRL 15998 RepID=UPI0001AEF979
          Length = 363

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 33/74 (44%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R+H+  VL+ L  +ER++++LR+G +DG  R+L EIG IFG++RERI Q+E++ L RL
Sbjct: 290 LLRQHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLSRL 349

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 350 RDHAFADQLRGYLD 363

[39][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
           communis RepID=B9SDA3_RICCO
          Length = 569

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 35/74 (47%), Positives = 50/74 (67%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           KQ M++ +  VLN L P+E +++R RFG EDG  ++L EIGEI G+SRERI Q+E+ A  
Sbjct: 493 KQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFR 552

Query: 345 RLKKCLVSQGLDAY 304
           +LK    ++ L  Y
Sbjct: 553 KLKNKKRTKQLKQY 566

[40][TOP]
>UniRef100_UPI0001B55E40 RNA polymerase principal sigma factor n=1 Tax=Streptomyces sp.
           SPB78 RepID=UPI0001B55E40
          Length = 201

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 33/79 (41%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S +  L+RRH+ +VL+ L  +ER++++LR+G +DG  R+L EIG +FG++RERI Q+E +
Sbjct: 123 SAALLLLRRHLEDVLSTLGERERQVVQLRYGLDDGRPRTLEEIGTLFGVTRERIRQIEAK 182

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            L +L+    +  L  Y D
Sbjct: 183 TLAKLRSHAFADQLRGYLD 201

[41][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
           23779 RepID=A9B4B0_HERA2
          Length = 400

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 31/66 (46%), Positives = 51/66 (77%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S Q++R  V  VL++L  +E+R+++LRFG EDG +R+L E+G+ FG++RERI Q+E +
Sbjct: 322 AASHQMLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVK 381

Query: 354 ALYRLK 337
           AL +L+
Sbjct: 382 ALRKLR 387

[42][TOP]
>UniRef100_C7H3D6 RNA polymerase sigma factor RpoD n=1 Tax=Faecalibacterium
           prausnitzii A2-165 RepID=C7H3D6_9FIRM
          Length = 359

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 31/63 (49%), Positives = 48/63 (76%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           ++L+RR + NVL  L P+E R++ LRFG EDG+ R+L E+G+ F ++RERI Q+E +AL 
Sbjct: 283 RELLRRELANVLKSLTPREERVLTLRFGLEDGQARTLEELGKEFNVTRERIRQIEAKALR 342

Query: 345 RLK 337
           +L+
Sbjct: 343 KLR 345

[43][TOP]
>UniRef100_C0GBZ7 RNA polymerase sigma factor n=1 Tax=Dethiobacter alkaliphilus AHT 1
           RepID=C0GBZ7_9FIRM
          Length = 372

 Score = 71.2 bits (173), Expect = 5e-11
 Identities = 31/75 (41%), Positives = 54/75 (72%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL  L P+E++++ LRFG EDG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 298 ELLKEQLDDVLETLTPREKKVLTLRFGLEDGRSRTLEEVGQVFGVTRERIRQIEAKALRK 357

Query: 342 LKKCLVSQGLDAYAD 298
           L+  + S+ L  Y +
Sbjct: 358 LRHPMRSKRLKDYLE 372

[44][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
           wolfei str. Goettingen RepID=Q0AWU4_SYNWW
          Length = 358

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 35/83 (42%), Positives = 54/83 (65%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S   S S  L+R H+  +LN L  +E +++RLRFG +DG  R+L E+G+ FG++RERI Q
Sbjct: 276 SPEESASFVLLREHLDGILNTLTEREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQ 335

Query: 366 LENRALYRLKKCLVSQGLDAYAD 298
           +E +AL +L+    S+ L  Y +
Sbjct: 336 IEAKALRKLRHPSRSKKLKDYIE 358

[45][TOP]
>UniRef100_B2A1Z3 RNA polymerase sigma factor n=1 Tax=Natranaerobius thermophilus
           JW/NM-WN-LF RepID=B2A1Z3_NATTJ
          Length = 360

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 32/75 (42%), Positives = 55/75 (73%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  +  VL+ L P+E++++RLRFG +DG+ R+L E+G+ FG++RERI Q+E +AL +
Sbjct: 286 ELLKGQLEEVLDSLTPREQKVLRLRFGLDDGKTRTLEEVGKHFGVTRERIRQIEAKALRK 345

Query: 342 LKKCLVSQGLDAYAD 298
           L+  + S+ L  Y D
Sbjct: 346 LRHPMRSKRLKDYLD 360

[46][TOP]
>UniRef100_A4X4X9 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440
           RepID=A4X4X9_SALTO
          Length = 332

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 36/78 (46%), Positives = 53/78 (67%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS   +R+ +  VL  L  +E+ +IRLRFG +DG +R+L E+G  FGLSRERI Q+E  
Sbjct: 254 TVSGGELRQEMCGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKG 313

Query: 354 ALYRLKKCLVSQGLDAYA 301
            L++L+    +Q L+AYA
Sbjct: 314 TLHKLRAPERAQRLEAYA 331

[47][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
           acidaminovorans RepID=B0VJJ6_9BACT
          Length = 579

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 33/71 (46%), Positives = 49/71 (69%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS      + L+++ V  VL  L P+E R+IRLRFG +DG  R+L E+G IF ++RERI 
Sbjct: 491 ISPERLAERSLLKKQVDEVLKTLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIR 550

Query: 369 QLENRALYRLK 337
           Q+E++AL +L+
Sbjct: 551 QIEDKALKKLR 561

[48][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LQB0_PICSI
          Length = 495

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 34/83 (40%), Positives = 57/83 (68%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S+   VSK+L ++ +  VL+ L  +E++++RLR+G +DG  +SL E+GE F LSRER+ Q
Sbjct: 412 STETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQ 471

Query: 366 LENRALYRLKKCLVSQGLDAYAD 298
           +E +A+ +L++   +Q L  Y D
Sbjct: 472 IEMKAMRKLRQNHRTQHLKHYLD 494

[49][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
           RepID=B8LLW6_PICSI
          Length = 592

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 34/83 (40%), Positives = 57/83 (68%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S+   VSK+L ++ +  VL+ L  +E++++RLR+G +DG  +SL E+GE F LSRER+ Q
Sbjct: 509 STETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQ 568

Query: 366 LENRALYRLKKCLVSQGLDAYAD 298
           +E +A+ +L++   +Q L  Y D
Sbjct: 569 IEMKAMRKLRQNHRTQHLKHYLD 591

[50][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=Q9L4T2_NOSP7
          Length = 389

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 312 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 371

Query: 351 LYRLK 337
           L +L+
Sbjct: 372 LRKLR 376

[51][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
           RepID=B5VWQ7_SPIMA
          Length = 387

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + +VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 310 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 369

Query: 351 LYRLK 337
           L +L+
Sbjct: 370 LRKLR 374

[52][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
           RepID=B4WPM0_9SYNE
          Length = 404

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + +VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 327 VSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 386

Query: 351 LYRLK 337
           L +L+
Sbjct: 387 LRKLR 391

[53][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
           7420 RepID=B4W0Y8_9CYAN
          Length = 380

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + +VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 303 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 362

Query: 351 LYRLK 337
           L +L+
Sbjct: 363 LRKLR 367

[54][TOP]
>UniRef100_A8UY45 RNA polymerase sigma factor n=1 Tax=Hydrogenivirga sp. 128-5-R1-1
           RepID=A8UY45_9AQUI
          Length = 309

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/74 (43%), Positives = 53/74 (71%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           SV ++++ + + ++L+KL  KERR++ LRFG +  E ++L EIG+I G+SRER+ QLE R
Sbjct: 231 SVIQEVLEKEIYDLLDKLPEKERRVVELRFGLKGNEPKTLREIGDILGVSRERVRQLETR 290

Query: 354 ALYRLKKCLVSQGL 313
           AL +L+   + + L
Sbjct: 291 ALRKLRSLAMKRHL 304

[55][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZJC3_NODSP
          Length = 391

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 314 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 373

Query: 351 LYRLK 337
           L +L+
Sbjct: 374 LRKLR 378

[56][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
           RepID=A0YTZ3_9CYAN
          Length = 391

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 50/65 (76%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + +VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 314 VSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 373

Query: 351 LYRLK 337
           L +L+
Sbjct: 374 LRKLR 378

[57][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
           RepID=A4RYI5_OSTLU
          Length = 344

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           K L++  + NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL 
Sbjct: 254 KSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGTVFSVTRERIRQIEAKALR 313

Query: 345 RLKK 334
           +LK+
Sbjct: 314 KLKQ 317

[58][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
           RepID=RPOD_ANASP
          Length = 390

 Score = 70.5 bits (171), Expect = 8e-11
 Identities = 32/65 (49%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL+ L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 313 VSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 372

Query: 351 LYRLK 337
           L +L+
Sbjct: 373 LRKLR 377

[59][TOP]
>UniRef100_UPI0001AEE245 RNA polymerase sigma factor n=1 Tax=Streptomyces albus J1074
           RepID=UPI0001AEE245
          Length = 357

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 32/79 (40%), Positives = 55/79 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S +  L+R+H+  VL  L  +ER++++LR+GF+DG  R+L EIG +FG++RER+ Q+E++
Sbjct: 279 SAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESK 338

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            L RL++   +  L  Y +
Sbjct: 339 TLRRLREHTAAGQLRGYLE 357

[60][TOP]
>UniRef100_Q5YT68 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
           RepID=Q5YT68_NOCFA
          Length = 322

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 35/82 (42%), Positives = 55/82 (67%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S+  +V   L+   V +VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ Q
Sbjct: 240 SAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 299

Query: 366 LENRALYRLKKCLVSQGLDAYA 301
           +E   + +L+K   +  L AYA
Sbjct: 300 IEREVMAKLRKGERADRLRAYA 321

[61][TOP]
>UniRef100_Q9R5W0 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus
           RepID=Q9R5W0_STRGR
          Length = 357

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 32/79 (40%), Positives = 55/79 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S +  L+R+H+  VL  L  +ER++++LR+GF+DG  R+L EIG +FG++RER+ Q+E++
Sbjct: 279 SAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEEIGRLFGVTRERVRQIESK 338

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            L RL++   +  L  Y +
Sbjct: 339 TLRRLREHTAAGQLRGYLE 357

[62][TOP]
>UniRef100_Q9ZPL0 Sigma factor SIG6 n=1 Tax=Zea mays RepID=Q9ZPL0_MAIZE
          Length = 541

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 35/83 (42%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNK-LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLE 361
           +SV + +MR+ V + L   L P+E+ II  RFG  DG+ ++L  IG+++GLS+ERI Q++
Sbjct: 458 VSVDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQ 517

Query: 360 NRALYRLKKCLVSQGLDAYADKL 292
           N+AL +L+  + +QG   Y D L
Sbjct: 518 NKALDKLRNSISAQGFHVYFDLL 540

[63][TOP]
>UniRef100_B4FJ30 Putative uncharacterized protein n=1 Tax=Zea mays
           RepID=B4FJ30_MAIZE
          Length = 541

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 35/83 (42%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNK-LRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLE 361
           +SV + +MR+ V + L   L P+E+ II  RFG  DG+ ++L  IG+++GLS+ERI Q++
Sbjct: 458 VSVDRLMMRQQVRSFLTGILSPREKEIIEHRFGIHDGQPKTLHVIGDMYGLSKERIRQVQ 517

Query: 360 NRALYRLKKCLVSQGLDAYADKL 292
           N+AL +L+  + +QG   Y D L
Sbjct: 518 NKALDKLRNSISAQGFHVYFDLL 540

[64][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
           RepID=Q67RX0_SYMTH
          Length = 388

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 32/79 (40%), Positives = 53/79 (67%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L++  +  VL  L P+E +++RLRFG +DG  R+L E+G++FG++RERI Q+E +
Sbjct: 310 AASFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAK 369

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  Y +
Sbjct: 370 ALRKLRHPSRSKKLKDYLE 388

[65][TOP]
>UniRef100_O67437 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
           RepID=O67437_AQUAE
          Length = 310

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 33/73 (45%), Positives = 53/73 (72%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V ++++++ + ++L+KL  KER++I LRFG +  E ++L EIGEI GLSRER+ QLE RA
Sbjct: 233 VIQEVIQKEIDDLLSKLTDKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRA 292

Query: 351 LYRLKKCLVSQGL 313
           L +L+   + + L
Sbjct: 293 LRKLRSLAMKRHL 305

[66][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
           RepID=RPOD_CLOAB
          Length = 378

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 31/75 (41%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++++  +L +LN L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +
Sbjct: 304 RMLKEQLLKILNTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRK 363

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  Y D
Sbjct: 364 LRHPSRSKKLKDYLD 378

[67][TOP]
>UniRef100_Q0SRH3 RNA polymerase sigma factor n=8 Tax=Clostridium perfringens
           RepID=Q0SRH3_CLOPS
          Length = 366

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 353 RHPSRSKKLKDYLD 366

[68][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
           RepID=Q892T0_CLOTE
          Length = 366

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 353 RHPSRSKKLKDYLD 366

[69][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NHG5_GLOVI
          Length = 400

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/65 (47%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VLN L P+ER ++RLR+G +DG  ++L EIG++F ++RERI Q+E +A
Sbjct: 323 VAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 382

Query: 351 LYRLK 337
           L +L+
Sbjct: 383 LRKLR 387

[70][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
           RepID=Q59965_SYNP2
          Length = 375

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 32/65 (49%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  + NVL+ L  +ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 298 VSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 357

Query: 351 LYRLK 337
           L +L+
Sbjct: 358 LRKLR 362

[71][TOP]
>UniRef100_Q03WT3 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293 RepID=Q03WT3_LEUMM
          Length = 432

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 33/85 (38%), Positives = 56/85 (65%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   S + +++R  + +VL+ L  +E  ++RLRFG EDG  R+L E+G +FG++RERI 
Sbjct: 345 VSPADSAAYEMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIR 404

Query: 369 QLENRALYRLKKCLVSQGLDAYADK 295
           Q+E +AL +L+    S+ L  + D+
Sbjct: 405 QIEAKALRKLRHPSRSKQLKDFMDE 429

[72][TOP]
>UniRef100_B2TMC7 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum B str.
           Eklund 17B RepID=B2TMC7_CLOBB
          Length = 374

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 301 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 361 RHPSRSKKLKDYLD 374

[73][TOP]
>UniRef100_A7NGG2 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NGG2_ROSCS
          Length = 405

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 34/79 (43%), Positives = 50/79 (63%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S S  ++R  + + L KL  +ERRII+LR+G  DG  R+L E+G  FG++RERI Q+E R
Sbjct: 327 SASSHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEAR 386

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            L +L+     +GL  Y +
Sbjct: 387 VLRKLRHPHYGRGLRGYLE 405

[74][TOP]
>UniRef100_A6LRQ7 RNA polymerase sigma factor n=1 Tax=Clostridium beijerinckii NCIMB
           8052 RepID=A6LRQ7_CLOB8
          Length = 376

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 303 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 362

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 363 RHPSRSKKLKDYLD 376

[75][TOP]
>UniRef100_A5N6R2 RNA polymerase sigma factor n=2 Tax=Clostridium kluyveri
           RepID=A5N6R2_CLOK5
          Length = 354

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 281 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 340

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 341 RHPSRSKKLKDYLD 354

[76][TOP]
>UniRef100_A0Q1P4 RNA polymerase sigma factor n=1 Tax=Clostridium novyi NT
           RepID=A0Q1P4_CLONN
          Length = 368

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 355 RHPSRSKKLKDYLD 368

[77][TOP]
>UniRef100_Q0TNV3 RNA polymerase sigma factor n=2 Tax=Clostridium perfringens
           RepID=Q0TNV3_CLOP1
          Length = 366

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 293 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 352

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 353 RHPSRSKKLKDYLD 366

[78][TOP]
>UniRef100_C6PTX7 RNA polymerase sigma factor n=1 Tax=Clostridium carboxidivorans P7
           RepID=C6PTX7_9CLOT
          Length = 361

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 288 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 347

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 348 RHPSRSKKLKDYLD 361

[79][TOP]
>UniRef100_C5VRR6 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum D str.
           1873 RepID=C5VRR6_CLOBO
          Length = 368

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 355 RHPSRSKKLKDYLD 368

[80][TOP]
>UniRef100_B2V2K8 RNA polymerase sigma factor n=2 Tax=Clostridium botulinum E
           RepID=B2V2K8_CLOBA
          Length = 374

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 301 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 360

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 361 RHPSRSKKLKDYLD 374

[81][TOP]
>UniRef100_C2KJ20 RNA polymerase sigma factor n=1 Tax=Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254 RepID=C2KJ20_LEUMC
          Length = 432

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 33/85 (38%), Positives = 56/85 (65%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   S + +++R  + +VL+ L  +E  ++RLRFG EDG  R+L E+G +FG++RERI 
Sbjct: 345 VSPADSAAYEMLREQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIR 404

Query: 369 QLENRALYRLKKCLVSQGLDAYADK 295
           Q+E +AL +L+    S+ L  + D+
Sbjct: 405 QIEAKALRKLRHPSRSKQLKDFMDE 429

[82][TOP]
>UniRef100_C1IAB3 RNA polymerase sigma factor n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1IAB3_9CLOT
          Length = 370

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 297 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 356

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 357 RHPSRSKKLKDYLD 370

[83][TOP]
>UniRef100_B1QWY9 RNA polymerase sigma factor n=2 Tax=Clostridium butyricum
           RepID=B1QWY9_CLOBU
          Length = 369

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 296 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 355

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 356 RHPSRSKKLKDYLD 369

[84][TOP]
>UniRef100_A5I618 RNA polymerase sigma factor n=9 Tax=Clostridium botulinum
           RepID=A5I618_CLOBH
          Length = 361

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 288 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 347

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 348 RHPSRSKKLKDYLD 361

[85][TOP]
>UniRef100_B1BDC8 RNA polymerase sigma factor n=1 Tax=Clostridium botulinum C str.
           Eklund RepID=B1BDC8_CLOBO
          Length = 368

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 295 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 354

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 355 RHPSRSKKLKDYLD 368

[86][TOP]
>UniRef100_Q98RZ3 RNA-polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q98RZ3_GUITH
          Length = 460

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 28/66 (42%), Positives = 50/66 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V K ++R  + NV+N L P+ER ++R+R+G +DG  ++L EIG+IF ++RER+ Q+E +A
Sbjct: 348 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 407

Query: 351 LYRLKK 334
           + +L++
Sbjct: 408 IRKLRQ 413

[87][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
           RepID=Q8S9D0_GUITH
          Length = 490

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 28/66 (42%), Positives = 50/66 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V K ++R  + NV+N L P+ER ++R+R+G +DG  ++L EIG+IF ++RER+ Q+E +A
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424

Query: 351 LYRLKK 334
           + +L++
Sbjct: 425 IRKLRQ 430

[88][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
          Length = 485

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 28/66 (42%), Positives = 50/66 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V K ++R  + NV+N L P+ER ++R+R+G +DG  ++L EIG+IF ++RER+ Q+E +A
Sbjct: 365 VEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKA 424

Query: 351 LYRLKK 334
           + +L++
Sbjct: 425 IRKLRQ 430

[89][TOP]
>UniRef100_UPI0001B56202 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. C
           RepID=UPI0001B56202
          Length = 381

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 308 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 367

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 368 RDHAFADQLRGYLD 381

[90][TOP]
>UniRef100_UPI0001B51C3A RNA polymerase sigma factor n=1 Tax=Streptomyces viridochromogenes
           DSM 40736 RepID=UPI0001B51C3A
          Length = 438

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 365 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 424

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 425 RDHAFADQLRGYLD 438

[91][TOP]
>UniRef100_UPI0001B4B283 RNA polymerase sigma factor n=1 Tax=Streptomyces hygroscopicus ATCC
           53653 RepID=UPI0001B4B283
          Length = 444

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 371 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 430

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 431 RDHAFADQLRGYLD 444

[92][TOP]
>UniRef100_UPI0001694293 RNA polymerase sigma factor RpoD n=1 Tax=Paenibacillus larvae
           subsp. larvae BRL-230010 RepID=UPI0001694293
          Length = 367

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S +L++  + +VL+ L  +E  ++RLRFG EDG  R+L E+G++FG++RERI Q+E +
Sbjct: 289 AASYELLKEQLEHVLDTLTEREENVLRLRFGLEDGRSRTLEEVGKVFGVTRERIRQIEAK 348

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  + D
Sbjct: 349 ALRKLRHPSRSKRLKDFLD 367

[93][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
           RepID=B0CDC4_ACAM1
          Length = 371

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/65 (47%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL+ L P+ER +++LR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 294 VSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 353

Query: 351 LYRLK 337
           L +L+
Sbjct: 354 LRKLR 358

[94][TOP]
>UniRef100_A9WI86 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WI86_CHLAA
          Length = 360

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNV-LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERI 373
           ++S M +++Q M    L   LN+L  +ER+I++LR+G  DG+ R+L E+G  FG++RER 
Sbjct: 276 VASPMEIAEQKMLHAELTAALNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERT 335

Query: 372 HQLENRALYRLKKCLVSQGLDAYAD 298
            Q+E  AL RL+   V Q L +Y D
Sbjct: 336 RQIEAEALRRLRHPSVGQRLHSYLD 360

[95][TOP]
>UniRef100_A5V244 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5V244_ROSS1
          Length = 401

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 34/79 (43%), Positives = 50/79 (63%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S S  ++R  + + L KL  +ERRII+LR+G  DG  R+L E+G  FG++RERI Q+E R
Sbjct: 323 SASHHILREQIDSALEKLPERERRIIQLRYGLYDGHYRTLEEVGREFGITRERIRQIEAR 382

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            L +L+     +GL  Y +
Sbjct: 383 VLRKLRHPHYGRGLRGYLE 401

[96][TOP]
>UniRef100_P71106 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
           RepID=P71106_CHLAU
          Length = 346

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNV-LNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERI 373
           ++S M +++Q M    L   LN+L  +ER+I++LR+G  DG+ R+L E+G  FG++RER 
Sbjct: 262 VASPMEIAEQKMLHAELTAALNELPERERKILQLRYGLIDGQRRTLEEVGATFGITRERT 321

Query: 372 HQLENRALYRLKKCLVSQGLDAYAD 298
            Q+E  AL RL+   V Q L +Y D
Sbjct: 322 RQIEAEALRRLRHPSVGQRLHSYLD 346

[97][TOP]
>UniRef100_C9ZAW9 Principal sigma factor HrdA n=1 Tax=Streptomyces scabiei 87.22
           RepID=C9ZAW9_STRSC
          Length = 387

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 314 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 373

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 374 RDHAFADQLRGYLD 387

[98][TOP]
>UniRef100_C9N712 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Streptomyces flavogriseus ATCC 33331
           RepID=C9N712_9ACTO
          Length = 358

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 51/74 (68%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G +DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 285 LLREHLEVVLSTLGERERKVVQLRYGLDDGRPRTLEEIGRIFGVTRERIRQIESKTLDKL 344

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 345 RGHAFADQLRGYLD 358

[99][TOP]
>UniRef100_C6W8L5 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
           RepID=C6W8L5_ACTMD
          Length = 349

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/79 (39%), Positives = 53/79 (67%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L+   +  VL+ L P+E  ++R+R+GF DG   +L E+G ++G++RERI Q+E+R
Sbjct: 271 AVSSALLSADLRAVLDTLTPREAGVVRMRYGFPDGVLHTLEEVGRVYGVTRERIRQIESR 330

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    S+GL+ Y D
Sbjct: 331 TMAKLQHPARSRGLEGYLD 349

[100][TOP]
>UniRef100_C5RE54 RNA polymerase sigma factor n=1 Tax=Clostridium cellulovorans 743B
           RepID=C5RE54_CLOCL
          Length = 363

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 51/74 (68%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           +++  ++NVL+ L P+E +++RLRFG +DG  R+L E+G  F ++RERI Q+E +AL +L
Sbjct: 290 MLKEQLINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKL 349

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 350 RHPSRSKKLKDYLD 363

[101][TOP]
>UniRef100_C5RBJ7 RNA polymerase sigma factor n=1 Tax=Weissella paramesenteroides
           ATCC 33313 RepID=C5RBJ7_WEIPA
          Length = 378

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 33/84 (39%), Positives = 56/84 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   S + Q+++  + +VL+ L  +E  ++RLRFG EDG  R+L E+G++FG++RERI 
Sbjct: 295 VSPADSAAYQMLKEQLESVLDTLTDREENVLRLRFGLEDGRTRTLEEVGKVFGVTRERIR 354

Query: 369 QLENRALYRLKKCLVSQGLDAYAD 298
           Q+E +AL +L+    S+ L  + D
Sbjct: 355 QIEAKALRKLRHPSRSKQLRDFLD 378

[102][TOP]
>UniRef100_B5HVY1 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
           RepID=B5HVY1_9ACTO
          Length = 374

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 301 LLREHLEAVLSTLGERERKVVQLRYGLADGRARTLEEIGRIFGVTRERIRQIESKTLNKL 360

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 361 RDHAFADQLRGYLD 374

[103][TOP]
>UniRef100_B5GQH3 RNA polymerase sigma factor n=1 Tax=Streptomyces clavuligerus ATCC
           27064 RepID=B5GQH3_STRCL
          Length = 385

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 312 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 371

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 372 RDHAFADQLRGYLD 385

[104][TOP]
>UniRef100_B4V476 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
           RepID=B4V476_9ACTO
          Length = 362

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 289 LLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 348

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 349 RDHAFADQLRGYLD 362

[105][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
           RepID=C1MUC7_9CHLO
          Length = 587

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 30/67 (44%), Positives = 49/67 (73%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +  K L++  + NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +
Sbjct: 492 ATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAK 551

Query: 354 ALYRLKK 334
           AL +L++
Sbjct: 552 ALRKLRQ 558

[106][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
          Length = 595

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 30/64 (46%), Positives = 48/64 (75%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           K L++  + NVLN L P+ER ++RLR+G +DG  ++L EIG +F ++RERI Q+E +AL 
Sbjct: 510 KVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEIGNVFSVTRERIRQIEAKALR 569

Query: 345 RLKK 334
           +L++
Sbjct: 570 KLRQ 573

[107][TOP]
>UniRef100_UPI0001B4E713 RNA polymerase principal sigma factor n=1 Tax=Streptomyces lividans
           TK24 RepID=UPI0001B4E713
          Length = 365

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 51/74 (68%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R+H+  VL+ L  +ER++++LR+G  DG  R+L EIG +FG++RERI Q+E++ L +L
Sbjct: 292 LLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKL 351

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 352 RDHAYADQLRGYLD 365

[108][TOP]
>UniRef100_UPI0001AF1456 RNA polymerase sigma factor n=1 Tax=Streptomyces ghanaensis ATCC
           14672 RepID=UPI0001AF1456
          Length = 430

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 357 LLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 416

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 417 RDHAFADQLRGYLD 430

[109][TOP]
>UniRef100_Q82BM5 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
           RepID=Q82BM5_STRAW
          Length = 389

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG IFG++RERI Q+E++ L +L
Sbjct: 316 LLREHLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKL 375

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 376 RDHAFADQLRGYLD 389

[110][TOP]
>UniRef100_Q8KUI1 RNA polymerase sigma factor n=1 Tax=Actinosynnema pretiosum subsp.
           auranticum RepID=Q8KUI1_ACTPA
          Length = 348

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 52/79 (65%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L+   +  VL  L P+E  ++R+R+GF DG   +L E+G ++G++RERI Q+E+R
Sbjct: 270 AVSSALLSADLRAVLETLTPREAGVVRMRYGFPDGVLHTLDEVGRVYGVTRERIRQIESR 329

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    S+GL+ Y D
Sbjct: 330 TMAKLQHPARSRGLEGYLD 348

[111][TOP]
>UniRef100_Q4BYC5 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
           RepID=Q4BYC5_CROWT
          Length = 328

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 29/72 (40%), Positives = 56/72 (77%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S  + ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+   +SRER+ 
Sbjct: 245 VSPDLYITQELLRQDLRNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRMNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL +L++
Sbjct: 305 QLEHQALAQLRR 316

[112][TOP]
>UniRef100_C7GZY7 RNA polymerase sigma factor RpoD n=1 Tax=Eubacterium saphenum ATCC
           49989 RepID=C7GZY7_9FIRM
          Length = 447

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 32/74 (43%), Positives = 53/74 (71%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           ++R  +L VLN L  +ER +++LRFG  DG++R+L E+G+ F ++RERI Q+E++A+ +L
Sbjct: 374 MLRDELLEVLNTLGERERNVLKLRFGLVDGKQRTLEEVGKQFDVTRERIRQIESKAIRKL 433

Query: 339 KKCLVSQGLDAYAD 298
           K   +S+ L  Y D
Sbjct: 434 KHPNMSKKLRDYID 447

[113][TOP]
>UniRef100_C2APA0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
           20162 RepID=C2APA0_TSUPA
          Length = 330

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 34/82 (41%), Positives = 54/82 (65%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S+  +V   LM   V +VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ Q
Sbjct: 248 SAESAVISTLMHSDVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQ 307

Query: 366 LENRALYRLKKCLVSQGLDAYA 301
           +E   + +L+    +  L AYA
Sbjct: 308 IEREVMSKLRNGERADRLRAYA 329

[114][TOP]
>UniRef100_P18182 RNA polymerase principal sigma factor hrdA n=1 Tax=Streptomyces
           coelicolor RepID=HRDA_STRCO
          Length = 396

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 31/74 (41%), Positives = 51/74 (68%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R+H+  VL+ L  +ER++++LR+G  DG  R+L EIG +FG++RERI Q+E++ L +L
Sbjct: 323 LLRQHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKL 382

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 383 RDHAYADQLRGYLD 396

[115][TOP]
>UniRef100_UPI0001B5772B RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces sp.
           C RepID=UPI0001B5772B
          Length = 325

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 36/83 (43%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS   SV   L    + ++L KL  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 243 ISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIR 302

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LK+     G DA A
Sbjct: 303 QIEKHALLELKRMARDTGFDAVA 325

[116][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
           pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
          Length = 396

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 319 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 378

Query: 351 LYRLK 337
           L +L+
Sbjct: 379 LRKLR 383

[117][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
           6301 RepID=Q5N3Q1_SYNP6
          Length = 399

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 30/65 (46%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL+ L P+ER ++RLR+G +DG  ++L EIG++F ++RERI Q+E +A
Sbjct: 322 VAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 381

Query: 351 LYRLK 337
           L +L+
Sbjct: 382 LRKLR 386

[118][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9312 RepID=Q31C37_PROM9
          Length = 393

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375

Query: 351 LYRLK 337
           L +L+
Sbjct: 376 LRKLR 380

[119][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
           RepID=B8I6N1_CLOCE
          Length = 359

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L++  +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 286 LLKEQLIDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 345

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 346 RHPSRSKKLKDYLD 359

[120][TOP]
>UniRef100_B1WQ73 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WQ73_CYAA5
          Length = 328

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 29/72 (40%), Positives = 56/72 (77%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S  + ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+   +SRER+ 
Sbjct: 245 VSPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL +L++
Sbjct: 305 QLEHQALAQLRR 316

[121][TOP]
>UniRef100_B1MYH4 RNA polymerase sigma factor n=1 Tax=Leuconostoc citreum KM20
           RepID=B1MYH4_LEUCK
          Length = 432

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 34/84 (40%), Positives = 54/84 (64%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS   S + +++R  + +VL  L  +E  ++RLRFG EDG  R+L E+G +FG++RERI 
Sbjct: 345 ISPADSAAYEMLRDQLESVLETLTDREENVLRLRFGLEDGRTRTLEEVGRVFGVTRERIR 404

Query: 369 QLENRALYRLKKCLVSQGLDAYAD 298
           Q+E +AL +L+    S+ L  + D
Sbjct: 405 QIEAKALRKLRHPSRSKQLKDFMD 428

[122][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9215 RepID=A8G3L2_PROM2
          Length = 393

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375

Query: 351 LYRLK 337
           L +L+
Sbjct: 376 LRKLR 380

[123][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9301 RepID=A3PBM1_PROM0
          Length = 394

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 317 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 376

Query: 351 LYRLK 337
           L +L+
Sbjct: 377 LRKLR 381

[124][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9515 RepID=A2BVF8_PROM5
          Length = 397

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 320 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 379

Query: 351 LYRLK 337
           L +L+
Sbjct: 380 LRKLR 384

[125][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           AS9601 RepID=A2BPX8_PROMS
          Length = 394

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 317 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 376

Query: 351 LYRLK 337
           L +L+
Sbjct: 377 LRKLR 381

[126][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
           RepID=A1UF13_MYCSK
          Length = 319

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/83 (38%), Positives = 56/83 (67%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 236 MSAENAVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 295

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 296 QIEREVMAKLRNGERADRLRSYA 318

[127][TOP]
>UniRef100_Q59815 RNA polymerase sigma factor n=1 Tax=Streptomyces aureofaciens
           RepID=Q59815_STRAU
          Length = 325

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 36/83 (43%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS   SV   L    + ++L KL  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 243 ISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIR 302

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LK+     G DA A
Sbjct: 303 QIEKHALLELKRMARDTGFDAVA 325

[128][TOP]
>UniRef100_C9KNX0 RNA polymerase sigma factor RpoD n=1 Tax=Mitsuokella multacida DSM
           20544 RepID=C9KNX0_9FIRM
          Length = 373

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L++  + +VL+ L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +
Sbjct: 295 AASFMLLKEQLEDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAK 354

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  + D
Sbjct: 355 ALRKLRHPSRSRKLKDFLD 373

[129][TOP]
>UniRef100_C8P839 RNA polymerase sigma factor n=1 Tax=Lactobacillus antri DSM 16041
           RepID=C8P839_9LACO
          Length = 380

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 28/62 (45%), Positives = 48/62 (77%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365

Query: 342 LK 337
           L+
Sbjct: 366 LR 367

[130][TOP]
>UniRef100_C7XU09 RNA polymerase sigma factor RpoS n=1 Tax=Lactobacillus coleohominis
           101-4-CHN RepID=C7XU09_9LACO
          Length = 381

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 28/62 (45%), Positives = 48/62 (77%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 307 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 366

Query: 342 LK 337
           L+
Sbjct: 367 LR 368

[131][TOP]
>UniRef100_C2EX53 RNA polymerase sigma factor n=2 Tax=Lactobacillus reuteri
           RepID=C2EX53_LACRE
          Length = 380

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 28/62 (45%), Positives = 48/62 (77%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365

Query: 342 LK 337
           L+
Sbjct: 366 LR 367

[132][TOP]
>UniRef100_C2ESB4 RNA polymerase sigma factor n=1 Tax=Lactobacillus vaginalis ATCC
           49540 RepID=C2ESB4_9LACO
          Length = 380

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 28/62 (45%), Positives = 48/62 (77%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365

Query: 342 LK 337
           L+
Sbjct: 366 LR 367

[133][TOP]
>UniRef100_A5VJI3 RNA polymerase sigma factor n=4 Tax=Lactobacillus reuteri
           RepID=A5VJI3_LACRD
          Length = 380

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 28/62 (45%), Positives = 48/62 (77%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365

Query: 342 LK 337
           L+
Sbjct: 366 LR 367

[134][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9202 RepID=B9P0P2_PROMA
          Length = 393

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 32/65 (49%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 316 VSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKA 375

Query: 351 LYRLK 337
           L +L+
Sbjct: 376 LRKLR 380

[135][TOP]
>UniRef100_B4VDF5 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. Mg1
           RepID=B4VDF5_9ACTO
          Length = 325

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 36/83 (43%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS   SV   L    + ++L KL  +   II++R+G +DG ER+L+E+G+  GL+RERI 
Sbjct: 243 ISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIR 302

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LKK     G DA A
Sbjct: 303 QIEKHALLELKKMARDTGFDAVA 325

[136][TOP]
>UniRef100_B3XRX4 RNA polymerase sigma factor n=1 Tax=Lactobacillus reuteri 100-23
           RepID=B3XRX4_LACRE
          Length = 380

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 28/62 (45%), Positives = 48/62 (77%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 365

Query: 342 LK 337
           L+
Sbjct: 366 LR 367

[137][TOP]
>UniRef100_A3IZB7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3IZB7_9CHRO
          Length = 328

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 29/72 (40%), Positives = 56/72 (77%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S  + ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+   +SRER+ 
Sbjct: 245 VSPDIYITQELLRQDLSNLMAELTPQQRTVLTLRFGLEDGKELSLAKIGKRLNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL +L++
Sbjct: 305 QLEHQALAQLRR 316

[138][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
           PCC 7942 RepID=RPOD1_SYNE7
          Length = 399

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 30/65 (46%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL+ L P+ER ++RLR+G +DG  ++L EIG++F ++RERI Q+E +A
Sbjct: 322 VAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 381

Query: 351 LYRLK 337
           L +L+
Sbjct: 382 LRKLR 386

[139][TOP]
>UniRef100_UPI0001B4B7AF RNA polymerase sigma factor n=1 Tax=Streptomyces griseoflavus
           Tu4000 RepID=UPI0001B4B7AF
          Length = 412

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/74 (41%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R H+  VL+ L  +ER++++LR+G  DG  R+L EIG +FG++RERI Q+E++ L +L
Sbjct: 339 LLREHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRLFGVTRERIRQIESKTLNKL 398

Query: 339 KKCLVSQGLDAYAD 298
           +    +  L  Y D
Sbjct: 399 RDHAFADQLRGYLD 412

[140][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
           DSM 15176 RepID=UPI0001966A7F
          Length = 364

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 32/79 (40%), Positives = 53/79 (67%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S+ L++  + +VL  L P+E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +
Sbjct: 286 AASQTLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAK 345

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  + D
Sbjct: 346 ALRKLRHPSRSKKLRDFLD 364

[141][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
           RepID=Q7VD88_PROMA
          Length = 438

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           + V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E 
Sbjct: 359 LDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 418

Query: 357 RALYRLK 337
           +AL +L+
Sbjct: 419 KALRKLR 425

[142][TOP]
>UniRef100_C5D2W5 RNA polymerase sigma factor n=1 Tax=Geobacillus sp. WCH70
           RepID=C5D2W5_GEOSW
          Length = 831

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 32/54 (59%), Positives = 41/54 (75%)
 Frame = -1

Query: 477 PKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQG 316
           P++ +II  RFGF  GEE +L EIGE+FG+SRERI Q+EN+AL  LKKC   +G
Sbjct: 775 PRDWKIILYRFGFMTGEEMTLQEIGELFGVSRERIRQIENKALKHLKKCPALKG 828

[143][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9211 RepID=A9BEB7_PROM4
          Length = 425

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/67 (46%), Positives = 49/67 (73%)
 Frame = -1

Query: 537 MSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLEN 358
           + V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E 
Sbjct: 346 LDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEA 405

Query: 357 RALYRLK 337
           +AL +L+
Sbjct: 406 KALRKLR 412

[144][TOP]
>UniRef100_A8M7Z0 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205
           RepID=A8M7Z0_SALAI
          Length = 328

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 35/72 (48%), Positives = 48/72 (66%)
 Frame = -1

Query: 516 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 337
           +R+ V  VL  L  +E+ +IRLRFG +DG +R+L E+G  FGLSRERI Q+E   L +L+
Sbjct: 256 LRQEVRGVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLR 315

Query: 336 KCLVSQGLDAYA 301
               +Q L AYA
Sbjct: 316 APERAQRLAAYA 327

[145][TOP]
>UniRef100_A7NN98 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
           13941 RepID=A7NN98_ROSCS
          Length = 348

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/66 (46%), Positives = 47/66 (71%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S+QL+RR +   L++L  +ERRII LR+G  DG+ R+L E+G + G++RER  Q+E  
Sbjct: 270 AASQQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRRTLEEVGRVLGMTRERARQIEAE 329

Query: 354 ALYRLK 337
           AL RL+
Sbjct: 330 ALRRLR 335

[146][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
           RepID=A5GSD3_SYNR3
          Length = 401

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 324 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 383

Query: 351 LYRLK 337
           L +L+
Sbjct: 384 LLKLR 388

[147][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
           27405 RepID=A3DDV0_CLOTH
          Length = 358

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L++  +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 285 LLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 344

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 345 RHPSRSKKLKDYLD 358

[148][TOP]
>UniRef100_Q6J2R2 RNA polymerase sigma factor (Fragment) n=2 Tax=Oenococcus oeni
           PSU-1 RepID=Q6J2R2_OENOB
          Length = 465

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S S Q+++  +  VL  L  +E  ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +
Sbjct: 386 STSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAK 445

Query: 354 ALYRLK 337
           AL +L+
Sbjct: 446 ALRKLR 451

[149][TOP]
>UniRef100_C8NZE6 RNA polymerase sigma-43 factor n=1 Tax=Erysipelothrix rhusiopathiae
           ATCC 19414 RepID=C8NZE6_ERYRH
          Length = 459

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 33/78 (42%), Positives = 51/78 (65%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           + QL++  +  VL  L  +E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +AL
Sbjct: 381 NNQLLKEEIKMVLEGLTEREEKVLRLRFGLEDGRTRTLEEVGKEFNVTRERIRQIEAKAL 440

Query: 348 YRLKKCLVSQGLDAYADK 295
            +LK    S+ L  + DK
Sbjct: 441 RKLKHPTRSKRLRDFVDK 458

[150][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
          Length = 358

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 31/74 (41%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L++  +++VL+ L P+E +++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 285 LLKEQLVDVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKL 344

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 345 RHPSRSKKLKDYLD 358

[151][TOP]
>UniRef100_C4RDH0 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
           RepID=C4RDH0_9ACTO
          Length = 334

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 35/72 (48%), Positives = 48/72 (66%)
 Frame = -1

Query: 516 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 337
           +R  V  VL  L  +E+ +IRLRFG +DG +R+L E+G  FGLSRERI Q+E   L +L+
Sbjct: 262 LRNEVRIVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLR 321

Query: 336 KCLVSQGLDAYA 301
               +Q L+AYA
Sbjct: 322 APERAQRLEAYA 333

[152][TOP]
>UniRef100_B2GBZ9 RNA polymerase sigma factor n=3 Tax=Lactobacillus fermentum
           RepID=B2GBZ9_LACF3
          Length = 380

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 28/62 (45%), Positives = 47/62 (75%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           ++M++ + NVL+ L  +E  ++RLRFG +DG  R+L E+G +FG++RERI Q+E +AL +
Sbjct: 306 EMMKKQLENVLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRK 365

Query: 342 LK 337
           L+
Sbjct: 366 LR 367

[153][TOP]
>UniRef100_B0PFC0 RNA polymerase sigma factor n=1 Tax=Anaerotruncus colihominis DSM
           17241 RepID=B0PFC0_9FIRM
          Length = 361

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L+R  +  VL  L P+E +++RLRFG EDG  R+L E+G  F ++RERI Q+E +
Sbjct: 283 AASHTLLREQLSEVLQTLTPREEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAK 342

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  + D
Sbjct: 343 ALRKLRHPSRSKKLKDFLD 361

[154][TOP]
>UniRef100_A0NJA0 RNA polymerase sigma factor n=2 Tax=Oenococcus oeni
           RepID=A0NJA0_OENOE
          Length = 458

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 30/66 (45%), Positives = 47/66 (71%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S S Q+++  +  VL  L  +E  ++RLRFG EDG+ R+L E+G +FG++RERI Q+E +
Sbjct: 379 STSDQMLKDQLEEVLGTLTEREENVLRLRFGLEDGKTRTLEEVGRVFGVTRERIRQIEAK 438

Query: 354 ALYRLK 337
           AL +L+
Sbjct: 439 ALRKLR 444

[155][TOP]
>UniRef100_A5JEM2 Chloroplast RNA-polymerase sigma factor (Fragment) n=1
           Tax=Heterosigma akashiwo RepID=A5JEM2_9STRA
          Length = 404

 Score = 67.8 bits (164), Expect = 5e-10
 Identities = 27/61 (44%), Positives = 48/61 (78%)
 Frame = -1

Query: 516 MRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLK 337
           +R+ +  ++N L P+E+ ++R+R+G +DGE R+L EIG IF ++RER+ Q+E RAL++L+
Sbjct: 320 LRQDISRLINTLSPREQDVVRMRYGLDDGEIRTLEEIGSIFSVTRERVRQIEARALHKLR 379

Query: 336 K 334
           +
Sbjct: 380 Q 380

[156][TOP]
>UniRef100_UPI0001B4E11E RNA polymerase principal sigma factor n=1 Tax=Streptomyces
           viridochromogenes DSM 40736 RepID=UPI0001B4E11E
          Length = 332

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 35/83 (42%), Positives = 51/83 (61%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   SV   L    + +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 250 VSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIR 309

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LKK   S G DA A
Sbjct: 310 QIEKHALLELKKLARSTGFDAAA 332

[157][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
           RepID=Q7U5C4_SYNPX
          Length = 471

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 394 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 453

Query: 351 LYRLK 337
           L +L+
Sbjct: 454 LRKLR 458

[158][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
           RepID=Q3AWQ6_SYNS9
          Length = 451

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 374 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 433

Query: 351 LYRLK 337
           L +L+
Sbjct: 434 LRKLR 438

[159][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
           RepID=Q3ALS7_SYNSC
          Length = 435

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 358 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 417

Query: 351 LYRLK 337
           L +L+
Sbjct: 418 LRKLR 422

[160][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
           RepID=Q0I8I7_SYNS3
          Length = 440

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 363 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 422

Query: 351 LYRLK 337
           L +L+
Sbjct: 423 LRKLR 427

[161][TOP]
>UniRef100_B8G4K7 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
           RepID=B8G4K7_CHLAD
          Length = 345

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 33/77 (42%), Positives = 49/77 (63%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           +++L+ R +   LN+L  +ERRII LR+G  DG  R+L E+G + G++RER  Q+E  AL
Sbjct: 269 AQKLLHRDLCAALNQLSDRERRIIDLRYGLLDGRRRTLEEVGRVLGMTRERARQIEAEAL 328

Query: 348 YRLKKCLVSQGLDAYAD 298
            RL+   + Q L  Y D
Sbjct: 329 RRLRSPEIGQHLRDYLD 345

[162][TOP]
>UniRef100_B0JU57 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
           RepID=B0JU57_MICAN
          Length = 328

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 30/72 (41%), Positives = 53/72 (73%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S    ++++L+R+ + N+L +L P++R +I LRFG  DG+E SL++IG+   +SRER+ 
Sbjct: 245 VSPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL  L++
Sbjct: 305 QLEHQALAHLRR 316

[163][TOP]
>UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA
          Length = 345

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 33/77 (42%), Positives = 50/77 (64%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           +++L+RR +   L++L  +ERRII LR+G  DG  R+L E+G + G++RER  Q+E  AL
Sbjct: 269 AQKLLRRDLCAALDRLNDRERRIIDLRYGLVDGRRRTLEEVGRVLGMTRERARQIEAEAL 328

Query: 348 YRLKKCLVSQGLDAYAD 298
            RL+   V Q L  Y +
Sbjct: 329 RRLRSPEVGQHLRDYLE 345

[164][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
           RepID=A5GJC2_SYNPW
          Length = 450

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 373 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 432

Query: 351 LYRLK 337
           L +L+
Sbjct: 433 LRKLR 437

[165][TOP]
>UniRef100_C1F1D9 RNA polymerase sigma factor n=2 Tax=Acidobacterium capsulatum
           RepID=C1F1D9_ACIC5
          Length = 597

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 33/84 (39%), Positives = 53/84 (63%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   +V    ++ +   VL  L P+E R+I++RFG EDG E +L E+G+ F ++RERI 
Sbjct: 509 VSPSEAVISVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIR 568

Query: 369 QLENRALYRLKKCLVSQGLDAYAD 298
           Q+E +AL +L+    S+ L A+ D
Sbjct: 569 QIEAKALRKLRHPSRSRKLRAFVD 592

[166][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
           RepID=Q05YJ7_9SYNE
          Length = 451

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 374 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 433

Query: 351 LYRLK 337
           L +L+
Sbjct: 434 LRKLR 438

[167][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
           RepID=Q05RP2_9SYNE
          Length = 479

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 402 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 461

Query: 351 LYRLK 337
           L +L+
Sbjct: 462 LRKLR 466

[168][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
           RepID=D0CLH5_9SYNE
          Length = 458

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 381 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 440

Query: 351 LYRLK 337
           L +L+
Sbjct: 441 LRKLR 445

[169][TOP]
>UniRef100_C9R939 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ammonifex
           degensii KC4 RepID=C9R939_9THEO
          Length = 369

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 32/77 (41%), Positives = 51/77 (66%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           S  L+R  +  VL  L P+E++++RLRFG +DG  R+L E+G+ FG++RERI Q+E + L
Sbjct: 293 SYALLREQLNEVLQSLTPREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTL 352

Query: 348 YRLKKCLVSQGLDAYAD 298
            +L+    S+ L  Y +
Sbjct: 353 RKLRHPSRSKKLKDYLE 369

[170][TOP]
>UniRef100_C0U2T9 RNA polymerase sigma factor n=1 Tax=Geodermatophilus obscurus DSM
           43160 RepID=C0U2T9_9ACTO
          Length = 429

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 33/79 (41%), Positives = 53/79 (67%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  LM+  + +VL  L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 351 AVSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 410

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 411 TMSKLRHPSRSQVLRDYLD 429

[171][TOP]
>UniRef100_B9YB48 RNA polymerase sigma factor n=1 Tax=Holdemania filiformis DSM 12042
           RepID=B9YB48_9FIRM
          Length = 408

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 34/85 (40%), Positives = 53/85 (62%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S     + QL++  + NVL  L  +E +++RLRFG  DG  R+L E+G+ F ++RERI 
Sbjct: 323 MSPDQYANNQLLKDEINNVLQGLTEREEKVLRLRFGLYDGRTRTLEEVGKEFNVTRERIR 382

Query: 369 QLENRALYRLKKCLVSQGLDAYADK 295
           Q+E +AL +LK    S+ L  + DK
Sbjct: 383 QIEAKALRKLKHPTRSKRLRDFVDK 407

[172][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
           RepID=B5ILG7_9CHRO
          Length = 503

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 426 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 485

Query: 351 LYRLK 337
           L +L+
Sbjct: 486 LRKLR 490

[173][TOP]
>UniRef100_B5HKY0 RNA polymerase sigma factor n=1 Tax=Streptomyces sviceus ATCC 29083
           RepID=B5HKY0_9ACTO
          Length = 332

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 35/83 (42%), Positives = 51/83 (61%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   SV   L    + +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 250 VSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIR 309

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LKK   S G DA A
Sbjct: 310 QIEKHALLELKKLARSTGFDAAA 332

[174][TOP]
>UniRef100_A8YCV8 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
           RepID=A8YCV8_MICAE
          Length = 328

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 30/72 (41%), Positives = 53/72 (73%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S    ++++L+R+ + N+L +L P++R +I LRFG  DG+E SL++IG+   +SRER+ 
Sbjct: 245 VSPDTFITQELLRQDLANLLAELTPQQREVITLRFGLTDGKELSLAKIGQRMNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL  L++
Sbjct: 305 QLEHQALAHLRR 316

[175][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
           RepID=A4CRY9_SYNPV
          Length = 447

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 370 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 429

Query: 351 LYRLK 337
           L +L+
Sbjct: 430 LRKLR 434

[176][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
           RepID=A3Z5L5_9SYNE
          Length = 456

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 379 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 438

Query: 351 LYRLK 337
           L +L+
Sbjct: 439 LRKLR 443

[177][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
           RepID=A3YZH3_9SYNE
          Length = 469

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 392 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 451

Query: 351 LYRLK 337
           L +L+
Sbjct: 452 LRKLR 456

[178][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
          Length = 575

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 33/76 (43%), Positives = 51/76 (67%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           ++KQ MR+ +  VL+ L  +E+++IR RFG EDG  ++L EIGE+ G+SRERI Q+E+ A
Sbjct: 497 LTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSA 556

Query: 351 LYRLKKCLVSQGLDAY 304
             +L+    +  L  Y
Sbjct: 557 FRKLQNKKKTINLQQY 572

[179][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
           RepID=A9RTR4_PHYPA
          Length = 591

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 32/76 (42%), Positives = 53/76 (69%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           +Q++++ V  VL  L P+ER ++RLRFG +DG+ R+L EIG +F ++RERI Q+E +A+ 
Sbjct: 512 RQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMR 571

Query: 345 RLKKCLVSQGLDAYAD 298
           +L++   +  L  Y D
Sbjct: 572 KLRQPSRNGVLREYLD 587

[180][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
           RepID=B1X5Q2_PAUCH
          Length = 460

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 383 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 442

Query: 351 LYRLK 337
           L +L+
Sbjct: 443 LRKLR 447

[181][TOP]
>UniRef100_UPI0001742EF6 RNA polymerase sigma factor RpoD n=1 Tax=candidate division TM7
           single-cell isolate TM7a RepID=UPI0001742EF6
          Length = 323

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/77 (40%), Positives = 53/77 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S S QL++  V  +L+ L  +E++II++RFG E+G+  +L E+G+ F ++RERI Q+E +
Sbjct: 245 SASSQLLKEQVQGILSSLSDREQKIIKMRFGLENGKSHTLEEVGQEFAVTRERIRQIEAK 304

Query: 354 ALYRLKKCLVSQGLDAY 304
           AL +L+K   ++ L  Y
Sbjct: 305 ALAKLRKHKDAKKLHEY 321

[182][TOP]
>UniRef100_UPI00016B2386 RNA polymerase, sigma 70 subunit, RpoD family protein n=1
           Tax=candidate division TM7 single-cell isolate TM7b
           RepID=UPI00016B2386
          Length = 103

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/77 (40%), Positives = 53/77 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           S S QL++  V  +L+ L  +E++II++RFG E+G+  +L E+G+ F ++RERI Q+E +
Sbjct: 25  SASSQLLKEQVQGILSSLSDREQKIIKMRFGLENGKSHTLEEVGQEFAVTRERIRQIEAK 84

Query: 354 ALYRLKKCLVSQGLDAY 304
           AL +L+K   ++ L  Y
Sbjct: 85  ALAKLRKHKDAKKLHEY 101

[183][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9313 RepID=Q7V698_PROMM
          Length = 461

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 384 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKA 443

Query: 351 LYRLK 337
           L +L+
Sbjct: 444 LRKLR 448

[184][TOP]
>UniRef100_Q74IZ4 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii
           RepID=Q74IZ4_LACJO
          Length = 372

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/83 (38%), Positives = 52/83 (62%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S     S +L++  +  VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q
Sbjct: 290 SPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQ 349

Query: 366 LENRALYRLKKCLVSQGLDAYAD 298
           +E +AL +L+    S  L  + D
Sbjct: 350 IEAKALRKLRHPSRSNQLKDFLD 372

[185][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL2A RepID=Q46GS6_PROMT
          Length = 420

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 341 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 400

Query: 351 LYRLK 337
           L +L+
Sbjct: 401 LRKLR 405

[186][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
           RepID=Q2JS52_SYNJA
          Length = 404

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 30/65 (46%), Positives = 49/65 (75%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  + +VL  L P+ER +++LR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 327 VAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKA 386

Query: 351 LYRLK 337
           L +L+
Sbjct: 387 LRKLR 391

[187][TOP]
>UniRef100_B2IZW2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=B2IZW2_NOSP7
          Length = 332

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 29/72 (40%), Positives = 51/72 (70%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S  +    + +++++ N+L+KL P++R+I+  RFG  DG E SL+EIG+  G+SRER+ 
Sbjct: 250 LSPELYADHKFLQQNIQNLLSKLNPQQRQILTFRFGLTDGNELSLAEIGQRMGISRERVR 309

Query: 369 QLENRALYRLKK 334
           Q+E +AL  L++
Sbjct: 310 QIEQQALGSLRR 321

[188][TOP]
>UniRef100_B1MCY5 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
           19977 RepID=B1MCY5_MYCA9
          Length = 323

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/83 (38%), Positives = 57/83 (68%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   V +VL  L  +E+++IRLR+G +DG+ R+L +IG++FGLSRER+ 
Sbjct: 240 MSAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVR 299

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    ++ L +YA
Sbjct: 300 QIEREVMAKLRHGDRAERLRSYA 322

[189][TOP]
>UniRef100_A5UXX4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
           RepID=A5UXX4_ROSS1
          Length = 349

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/66 (46%), Positives = 46/66 (69%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S QL+RR +   L++L  +ERRII LR+G  DG+ R+L E+G + G++RER  Q+E  
Sbjct: 271 AASHQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRRTLEEVGRVLGMTRERARQIEAE 330

Query: 354 ALYRLK 337
           AL RL+
Sbjct: 331 ALRRLR 336

[190][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           MIT 9303 RepID=A2C7M0_PROM3
          Length = 444

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 367 VAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKA 426

Query: 351 LYRLK 337
           L +L+
Sbjct: 427 LRKLR 431

[191][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
           NATL1A RepID=A2C0V5_PROM1
          Length = 420

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/65 (47%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+K L+R  +  VL  L P+ER ++RLR+G +DG  ++L EIG+IF ++RERI Q+E +A
Sbjct: 341 VAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKA 400

Query: 351 LYRLK 337
           L +L+
Sbjct: 401 LRKLR 405

[192][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
           RepID=A1T7W4_MYCVP
          Length = 329

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   +  VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 246 MSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 305

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 306 QIEREVMAKLRNGERADRLRSYA 328

[193][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
           MC2 155 RepID=A0QVZ5_MYCS2
          Length = 319

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   +  VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 236 MSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 295

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 296 QIEREVMAKLRNGERADRLRSYA 318

[194][TOP]
>UniRef100_C2E6R7 RNA polymerase sigma factor n=1 Tax=Lactobacillus johnsonii ATCC
           33200 RepID=C2E6R7_LACJO
          Length = 372

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/83 (38%), Positives = 52/83 (62%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S     S +L++  +  VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q
Sbjct: 290 SPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQ 349

Query: 366 LENRALYRLKKCLVSQGLDAYAD 298
           +E +AL +L+    S  L  + D
Sbjct: 350 IEAKALRKLRHPSRSNQLKDFLD 372

[195][TOP]
>UniRef100_Q042Y7 RNA polymerase sigma factor n=3 Tax=Lactobacillus gasseri
           RepID=Q042Y7_LACGA
          Length = 373

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/83 (38%), Positives = 52/83 (62%)
 Frame = -1

Query: 546 SSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQ 367
           S     S +L++  +  VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q
Sbjct: 291 SPEQHASYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQ 350

Query: 366 LENRALYRLKKCLVSQGLDAYAD 298
           +E +AL +L+    S  L  + D
Sbjct: 351 IEAKALRKLRHPSRSNQLKDFLD 373

[196][TOP]
>UniRef100_B4AVJ3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
           RepID=B4AVJ3_9CHRO
          Length = 328

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 30/72 (41%), Positives = 55/72 (76%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS    ++++LMR+ + ++L +L P++R ++ LRFG +DG+E SL++IG+   +SRER+ 
Sbjct: 245 ISPDNYITQELMRQDLQDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL +L++
Sbjct: 305 QLEHQALSQLRR 316

[197][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
           RepID=B0MPW5_9FIRM
          Length = 358

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 31/79 (39%), Positives = 52/79 (65%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S+ L++  +  +L  L P+E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +
Sbjct: 280 AASRTLLKEQLSEILGTLTPREEKVLRLRFGLEDGRPRTLEEVGKEFDVTRERIRQIEAK 339

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  + D
Sbjct: 340 ALRKLRHPSRSKKLKDFLD 358

[198][TOP]
>UniRef100_A7VZA6 RNA polymerase sigma factor n=1 Tax=Clostridium leptum DSM 753
           RepID=A7VZA6_9CLOT
          Length = 365

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 32/79 (40%), Positives = 52/79 (65%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L++  +  VL+ L P+E +++RLRFG EDG  R+L E+G+ F ++RERI Q+E +
Sbjct: 287 AASHILLKEQLAEVLDTLTPREEKVLRLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEAK 346

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  + D
Sbjct: 347 ALRKLRHPSRSKKLKDFLD 365

[199][TOP]
>UniRef100_A1HPB3 RNA polymerase sigma factor n=1 Tax=Thermosinus carboxydivorans
           Nor1 RepID=A1HPB3_9FIRM
          Length = 368

 Score = 67.0 bits (162), Expect = 9e-10
 Identities = 29/66 (43%), Positives = 47/66 (71%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L++  +  VL  L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +
Sbjct: 290 AASFMLLKEQLEEVLETLTPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAK 349

Query: 354 ALYRLK 337
           AL +L+
Sbjct: 350 ALRKLR 355

[200][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
           intracellulare ATCC 13950 RepID=UPI0001B45B52
          Length = 319

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 236 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 295

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 296 QIERDVMSKLRNGERADRLRSYA 318

[201][TOP]
>UniRef100_Q8EPY6 RNA polymerase sigma factor n=1 Tax=Oceanobacillus iheyensis
           RepID=Q8EPY6_OCEIH
          Length = 380

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/84 (38%), Positives = 55/84 (65%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS     + +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI 
Sbjct: 297 ISPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIR 356

Query: 369 QLENRALYRLKKCLVSQGLDAYAD 298
           Q+E +AL +L+    S+ L  + D
Sbjct: 357 QIEAKALRKLRHPSRSKRLKDFLD 380

[202][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
           BP-1 RepID=Q8DL79_THEEB
          Length = 418

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/65 (46%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER +++LR+G +DG  ++L EIG++F ++RERI Q+E +A
Sbjct: 341 VSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 400

Query: 351 LYRLK 337
           L +L+
Sbjct: 401 LRKLR 405

[203][TOP]
>UniRef100_Q7NKZ2 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
           RepID=Q7NKZ2_GLOVI
          Length = 350

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 31/65 (47%), Positives = 47/65 (72%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V + LM + + ++L  L P+ER ++RLR+G  DG  R+L E+G+ FGL+RERI Q+E RA
Sbjct: 268 VVRDLMNQDLESLLQTLTPRERDVLRLRYGLIDGRSRTLDEVGQQFGLTRERIRQIEARA 327

Query: 351 LYRLK 337
           L +L+
Sbjct: 328 LRKLR 332

[204][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
           RepID=A0QIP2_MYCA1
          Length = 319

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 236 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 295

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 296 QIERDVMSKLRNGERADRLRSYA 318

[205][TOP]
>UniRef100_Q55525 RNA polymerase sigma factor n=1 Tax=Synechocystis sp. PCC 6803
           RepID=Q55525_SYNY3
          Length = 345

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 29/72 (40%), Positives = 53/72 (73%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S    ++++ MR+ + N+L +L P+++ ++ +RFG  DG+E SL++IG+   +SRER+ 
Sbjct: 262 VSPDAYITQESMRQDLQNLLAELTPQQQAVLTMRFGLNDGQELSLAKIGQHLNISRERVR 321

Query: 369 QLENRALYRLKK 334
           QLEN+AL +LK+
Sbjct: 322 QLENQALAQLKR 333

[206][TOP]
>UniRef100_Q3AEW8 RNA polymerase sigma factor n=1 Tax=Carboxydothermus
           hydrogenoformans Z-2901 RepID=Q3AEW8_CARHZ
          Length = 370

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/64 (46%), Positives = 47/64 (73%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           S  L+R  +  VL  L  +E++++RLRFG +DG  R+L E+G+IFG++RERI Q+E +AL
Sbjct: 294 SYTLLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKAL 353

Query: 348 YRLK 337
            +L+
Sbjct: 354 RKLR 357

[207][TOP]
>UniRef100_Q24T06 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           Y51 RepID=Q24T06_DESHY
          Length = 367

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 31/74 (41%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L++  +  VL  L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L
Sbjct: 294 LLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 353

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y +
Sbjct: 354 RHPSRSKKLKDYLE 367

[208][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
           RepID=B8ZQV3_MYCLB
          Length = 319

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 236 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 295

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 296 QIERDVMCKLRNGERADRLRSYA 318

[209][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
           RepID=B8HPM3_CYAP4
          Length = 378

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/65 (46%), Positives = 48/65 (73%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           VSK L+R  +  VL  L P+ER +++LR+G +DG  ++L EIG++F ++RERI Q+E +A
Sbjct: 301 VSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKA 360

Query: 351 LYRLK 337
           L +L+
Sbjct: 361 LRKLR 365

[210][TOP]
>UniRef100_B8FTY1 RNA polymerase sigma factor n=1 Tax=Desulfitobacterium hafniense
           DCB-2 RepID=B8FTY1_DESHD
          Length = 372

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 31/74 (41%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L++  +  VL  L P+E +++RLRFG +DG  R+L E+G+ FG++RERI Q+E +AL +L
Sbjct: 299 LLKEQLEEVLETLTPREEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKL 358

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y +
Sbjct: 359 RHPSRSKKLKDYLE 372

[211][TOP]
>UniRef100_B7K8N4 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
           RepID=B7K8N4_CYAP7
          Length = 328

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 30/72 (41%), Positives = 55/72 (76%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS    ++++LMR+ + ++L +L P++R ++ LRFG +DG+E SL++IG+   +SRER+ 
Sbjct: 245 ISPDNYITQELMRQDLHDLLAELTPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVR 304

Query: 369 QLENRALYRLKK 334
           QLE++AL +L++
Sbjct: 305 QLEHQALSQLRR 316

[212][TOP]
>UniRef100_B7K407 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 8801
           RepID=B7K407_CYAP8
          Length = 328

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 28/66 (42%), Positives = 53/66 (80%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+   +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQA 310

Query: 351 LYRLKK 334
           L +L++
Sbjct: 311 LAQLRR 316

[213][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
           RepID=A4TCQ2_MYCGI
          Length = 329

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   +  VL  L  +E+++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 246 MSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 305

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 306 QIEREVMAKLRNGDRADRLRSYA 328

[214][TOP]
>UniRef100_C9N6U7 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Streptomyces flavogriseus ATCC 33331
           RepID=C9N6U7_9ACTO
          Length = 333

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 35/83 (42%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           IS   SV   L    + +++ KL  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 251 ISPEQSVMTLLRSEELEDLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIR 310

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LK+     G DA A
Sbjct: 311 QIEKHALLELKRMAHDTGFDAAA 333

[215][TOP]
>UniRef100_C7QM79 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Cyanothece
           sp. PCC 8802 RepID=C7QM79_CYAP0
          Length = 328

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 28/66 (42%), Positives = 53/66 (80%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           ++++L+R+ + N++ +L P++R ++ LRFG EDG+E SL++IG+   +SRER+ QLE++A
Sbjct: 251 ITQELLRQDLKNLMEELTPQQRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQA 310

Query: 351 LYRLKK 334
           L +L++
Sbjct: 311 LAQLRR 316

[216][TOP]
>UniRef100_A0ZN70 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
           RepID=A0ZN70_NODSP
          Length = 327

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 29/65 (44%), Positives = 50/65 (76%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           +++ +R+ + N+L +L P++R+++ LRFG EDG E SL+++GE   LSRER+ QLE++AL
Sbjct: 252 TQEFLRQDLNNLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311

Query: 348 YRLKK 334
             L++
Sbjct: 312 AHLRR 316

[217][TOP]
>UniRef100_A0YXP5 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
           RepID=A0YXP5_9CYAN
          Length = 333

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 29/66 (43%), Positives = 51/66 (77%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V+ +L+R+ + +++++L P++R +I LR+G EDG+E SLS++G    +SRER+ QLEN+A
Sbjct: 257 VTHELLRQDLKSLIDELTPQQREVILLRYGLEDGKELSLSKVGARMSISRERVRQLENQA 316

Query: 351 LYRLKK 334
           L  L++
Sbjct: 317 LNHLRR 322

[218][TOP]
>UniRef100_O22455 Sigma factor 2 n=1 Tax=Arabidopsis thaliana RepID=O22455_ARATH
          Length = 574

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 33/82 (40%), Positives = 53/82 (64%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           ++S   + K+ MR+ +  VL+ L  +E+++IR RFG EDG  ++L EIGE+ G+SRER+ 
Sbjct: 488 VTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVR 547

Query: 369 QLENRALYRLKKCLVSQGLDAY 304
           Q+E+ A  +LK    +  L  Y
Sbjct: 548 QIESSAFRKLKNKKRNNHLQQY 569

[219][TOP]
>UniRef100_O22056 F22O13.2 n=1 Tax=Arabidopsis thaliana RepID=O22056_ARATH
          Length = 572

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 33/82 (40%), Positives = 53/82 (64%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           ++S   + K+ MR+ +  VL+ L  +E+++IR RFG EDG  ++L EIGE+ G+SRER+ 
Sbjct: 486 VTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVR 545

Query: 369 QLENRALYRLKKCLVSQGLDAY 304
           Q+E+ A  +LK    +  L  Y
Sbjct: 546 QIESSAFRKLKNKKRNNHLQQY 567

[220][TOP]
>UniRef100_B9IPZ1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9IPZ1_POPTR
          Length = 564

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 31/63 (49%), Positives = 44/63 (69%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           K+ M++ +  VL  L P+E ++IR RFG EDG  ++L EIGE+ G+SRERI Q+E  A  
Sbjct: 488 KEFMKKDLERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFR 547

Query: 345 RLK 337
           +LK
Sbjct: 548 KLK 550

[221][TOP]
>UniRef100_B9I6F1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9I6F1_POPTR
          Length = 567

 Score = 66.6 bits (161), Expect = 1e-09
 Identities = 29/63 (46%), Positives = 44/63 (69%)
 Frame = -1

Query: 525 KQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALY 346
           K+ M++ +  VL  L P+E +++R RFG EDG  ++L EIGE+ G+SRER+ Q+E  A  
Sbjct: 491 KEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFR 550

Query: 345 RLK 337
           +LK
Sbjct: 551 KLK 553

[222][TOP]
>UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN
           605 RepID=UPI0001B44D01
          Length = 377

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 299 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 358

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 359 TMSKLRHPSRSQVLRDYLD 377

[223][TOP]
>UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC
           12478 RepID=UPI0001AF41EF
          Length = 518

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 440 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 499

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 500 TMSKLRHPSRSQVLRDYLD 518

[224][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
           ATCC 12478 RepID=UPI0001AF41E8
          Length = 319

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 236 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 295

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 296 QIERDVMCKLRHGERADRLRSYA 318

[225][TOP]
>UniRef100_UPI0001AEFC8C RNA polymerase principal sigma factor hrdD n=1 Tax=Streptomyces
           roseosporus NRRL 11379 RepID=UPI0001AEFC8C
          Length = 308

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 34/83 (40%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   SV   L    + +++ KL  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 226 VSPEQSVMTLLRSEELEDLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIR 285

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LK+     G DA A
Sbjct: 286 QIEKHALLELKRMAHDTGFDAAA 308

[226][TOP]
>UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17
           RepID=UPI000190610E
          Length = 530

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 452 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 511

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 512 TMSKLRHPSRSQVLRDYLD 530

[227][TOP]
>UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
           02_1987 RepID=UPI00019014BB
          Length = 197

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 119 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 178

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 179 TMSKLRHPSRSQVLRDYLD 197

[228][TOP]
>UniRef100_UPI0001788764 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788764
          Length = 316

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 28/62 (45%), Positives = 46/62 (74%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  +  VL+ L  +E  ++RLRFG EDG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 242 ELLKEQLEEVLDTLTEREENVLRLRFGLEDGRTRTLEEVGQVFGVTRERIRQIEAKALRK 301

Query: 342 LK 337
           L+
Sbjct: 302 LR 303

[229][TOP]
>UniRef100_UPI00016C4C50 transcription initiation factor sigma 70 n=1 Tax=Gemmata
           obscuriglobus UQM 2246 RepID=UPI00016C4C50
          Length = 521

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = -1

Query: 531 VSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRA 352
           V   L++  +  VL  L P+ER +I LRFG +DG  ++L E+ + +G++RERI Q+E R 
Sbjct: 440 VDANLLKERIGEVLKSLAPREREVIELRFGLKDGTPKTLDEVAKQYGITRERIRQIEARG 499

Query: 351 LYRLKKCLVSQGLDAYAD 298
           L +L++   S  L+ +AD
Sbjct: 500 LLKLRQPTRSCRLEEFAD 517

[230][TOP]
>UniRef100_Q82H52 RNA polymerase sigma factor n=1 Tax=Streptomyces avermitilis
           RepID=Q82H52_STRAW
          Length = 331

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 34/83 (40%), Positives = 51/83 (61%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   SV   L    + +++ +L  +   II++R+G +DG ER+L+E+G+  GL+RERI 
Sbjct: 249 VSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIR 308

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LKK   S G DA A
Sbjct: 309 QIEKHALLELKKLARSTGFDAAA 331

[231][TOP]
>UniRef100_Q5WHD0 RNA polymerase sigma factor n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WHD0_BACSK
          Length = 373

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 299 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 358

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 359 LRHPSRSKRLKDFLD 373

[232][TOP]
>UniRef100_Q4L6R1 RNA polymerase sigma factor n=1 Tax=Staphylococcus haemolyticus
           JCSC1435 RepID=Q4L6R1_STAHJ
          Length = 368

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 354 LRHPSRSKRLKDFMD 368

[233][TOP]
>UniRef100_Q49Y04 RNA polymerase sigma factor n=1 Tax=Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305 RepID=Q49Y04_STAS1
          Length = 368

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 354 LRHPSRSKRLKDFMD 368

[234][TOP]
>UniRef100_C4L3Z9 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sp. AT1b
           RepID=C4L3Z9_EXISA
          Length = 364

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 290 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 349

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 350 LRHPSRSKRLKDFLD 364

[235][TOP]
>UniRef100_B9E6V2 RNA polymerase sigma factor n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9E6V2_MACCJ
          Length = 366

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 292 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 351

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 352 LRHPSRSKRLKDFMD 366

[236][TOP]
>UniRef100_B9DNN2 RNA polymerase sigma factor n=1 Tax=Staphylococcus carnosus subsp.
           carnosus TM300 RepID=B9DNN2_STACT
          Length = 369

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 295 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 354

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 355 LRHPSRSKRLKDFMD 369

[237][TOP]
>UniRef100_B8CXH1 RNA polymerase sigma factor n=1 Tax=Halothermothrix orenii H 168
           RepID=B8CXH1_HALOH
          Length = 358

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 33/79 (41%), Positives = 53/79 (67%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           + S  L+R  + +VL+ L  +E+R++ LRFG EDG  R+L E+G+ FG++RERI Q+E +
Sbjct: 280 AASFTLLREQLDDVLDTLTDREKRVLELRFGLEDGRPRTLEEVGKEFGVTRERIRQIEAK 339

Query: 354 ALYRLKKCLVSQGLDAYAD 298
           AL +L+    S+ L  Y +
Sbjct: 340 ALRKLRHPSRSKKLKDYLE 358

[238][TOP]
>UniRef100_B2J7M4 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
           RepID=B2J7M4_NOSP7
          Length = 327

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 29/65 (44%), Positives = 49/65 (75%)
 Frame = -1

Query: 528 SKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRAL 349
           +++ +R+ + N+L +L P++R ++ LRFG EDG E SL+++GE   LSRER+ QLE++AL
Sbjct: 252 NQEFLRQDLNNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQAL 311

Query: 348 YRLKK 334
             L++
Sbjct: 312 AHLRR 316

[239][TOP]
>UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
           RepID=B2HLZ7_MYCMM
          Length = 501

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 423 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 482

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 483 TMSKLRHPSRSQVLRDYLD 501

[240][TOP]
>UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
           RepID=B2HLY9_MYCMM
          Length = 333

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 250 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 309

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 310 QIERDVMCKLRHGERADRLRSYA 332

[241][TOP]
>UniRef100_B1YL80 RNA polymerase sigma factor n=1 Tax=Exiguobacterium sibiricum
           255-15 RepID=B1YL80_EXIS2
          Length = 361

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 287 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 346

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 347 LRHPSRSKRLKDFLD 361

[242][TOP]
>UniRef100_B1VTL5 RNA polymerase sigma factor n=1 Tax=Streptomyces griseus subsp.
           griseus NBRC 13350 RepID=B1VTL5_STRGG
          Length = 333

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 34/83 (40%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   SV   L    + +++ KL  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 251 VSPEQSVMTLLRSEELEDLIGKLDNRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIR 310

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LK+     G DA A
Sbjct: 311 QIEKHALLELKRMAHDTGFDAAA 333

[243][TOP]
>UniRef100_B1I1U1 RNA polymerase sigma factor n=1 Tax=Candidatus Desulforudis
           audaxviator MP104C RepID=B1I1U1_DESAP
          Length = 360

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/74 (43%), Positives = 50/74 (67%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L+R  + +VL  L  +E+R++RLRFG +DG  R+L E+G+ FG++RERI Q+E + L +L
Sbjct: 287 LLREQLDDVLKTLTEREQRVLRLRFGLDDGRARTLEEVGQEFGVTRERIRQIEAKTLRKL 346

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y D
Sbjct: 347 RHPSRSKKLKDYLD 360

[244][TOP]
>UniRef100_A6TSG9 RNA polymerase sigma factor n=1 Tax=Alkaliphilus metalliredigens
           QYMF RepID=A6TSG9_ALKMQ
          Length = 372

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 52/74 (70%)
 Frame = -1

Query: 519 LMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRL 340
           L++  ++ VL+ L P+E++++RLRFG +DG  R+L E+G+ F ++RERI Q+E +AL +L
Sbjct: 299 LLKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFDVTRERIRQIEAKALRKL 358

Query: 339 KKCLVSQGLDAYAD 298
           +    S+ L  Y +
Sbjct: 359 RHPSRSKKLKDYLE 372

[245][TOP]
>UniRef100_A0PT65 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
           RepID=A0PT65_MYCUA
          Length = 323

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 240 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 299

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 300 QIERDVMCKLRHGERADRLRSYA 322

[246][TOP]
>UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
           RepID=A0PT58_MYCUA
          Length = 501

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 423 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 482

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 483 TMSKLRHPSRSQVLRDYLD 501

[247][TOP]
>UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis
           RepID=Q60158_MYCBO
          Length = 528

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/79 (40%), Positives = 54/79 (68%)
 Frame = -1

Query: 534 SVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENR 355
           +VS  L++  + +VL+ L  +E  ++RLRFG  DG+ R+L EIG+++G++RERI Q+E++
Sbjct: 450 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 509

Query: 354 ALYRLKKCLVSQGLDAYAD 298
            + +L+    SQ L  Y D
Sbjct: 510 TMSKLRHPSRSQVLRDYLD 528

[248][TOP]
>UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
           RepID=P77906_MYCTU
          Length = 345

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 55/83 (66%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S+  +V  +L+   + +VL  L  +E ++IRLRFG +DG+ R+L +IG++FGLSRER+ 
Sbjct: 262 MSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVR 321

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E   + +L+    +  L +YA
Sbjct: 322 QIERDVMSKLRHGERADRLRSYA 344

[249][TOP]
>UniRef100_O08332 RNA polymerase sigma factor n=1 Tax=Staphylococcus aureus
           RepID=O08332_STAAU
          Length = 368

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 30/75 (40%), Positives = 52/75 (69%)
 Frame = -1

Query: 522 QLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYR 343
           +L++  + +VL+ L  +E  ++RLRFG +DG  R+L E+G++FG++RERI Q+E +AL +
Sbjct: 294 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 353

Query: 342 LKKCLVSQGLDAYAD 298
           L+    S+ L  + D
Sbjct: 354 LRHPSRSKRLKDFMD 368

[250][TOP]
>UniRef100_C9YWE0 Sigma factor HrdD n=1 Tax=Streptomyces scabiei 87.22
           RepID=C9YWE0_STRSC
          Length = 332

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 34/83 (40%), Positives = 50/83 (60%)
 Frame = -1

Query: 549 ISSHMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIH 370
           +S   SV   L    + +++ +L  +   II++R+G EDG ER+L+E+G+  GL+RERI 
Sbjct: 250 VSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIR 309

Query: 369 QLENRALYRLKKCLVSQGLDAYA 301
           Q+E  AL  LKK     G DA A
Sbjct: 310 QIEKHALLELKKLARDTGFDAVA 332