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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 315 bits (807), Expect = 2e-84
Identities = 146/192 (76%), Positives = 166/192 (86%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVS
Sbjct: 513 FSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVS 572
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
EQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV
Sbjct: 573 EQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWV 632
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
+ FG+ S LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+D
Sbjct: 633 LDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKD 692
Query: 541 ALVHYRNCIPES 576
ALVHYRN IPES
Sbjct: 693 ALVHYRNVIPES 704
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 315 bits (807), Expect = 2e-84
Identities = 146/192 (76%), Positives = 166/192 (86%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVS
Sbjct: 1953 FSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVS 2012
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
EQGNKAHFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV
Sbjct: 2013 EQGNKAHFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWV 2072
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
+ FG+ S LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+D
Sbjct: 2073 LDFGRPSQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKD 2132
Query: 541 ALVHYRNCIPES 576
ALVHYRN IPES
Sbjct: 2133 ALVHYRNVIPES 2144
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 301 bits (771), Expect = 2e-80
Identities = 143/192 (74%), Positives = 163/192 (84%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
FQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+S
Sbjct: 513 FQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMS 572
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
EQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV
Sbjct: 573 EQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWV 632
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
FGK S LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+D
Sbjct: 633 GDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKD 692
Query: 541 ALVHYRNCIPES 576
AL HYRN IPES
Sbjct: 693 ALAHYRNVIPES 704
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 301 bits (771), Expect = 2e-80
Identities = 143/192 (74%), Positives = 163/192 (84%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
FQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+S
Sbjct: 1955 FQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMS 2014
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
EQGNKAHFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV
Sbjct: 2015 EQGNKAHFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWV 2074
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
FGK S LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+D
Sbjct: 2075 GDFGKPSQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKD 2134
Query: 541 ALVHYRNCIPES 576
AL HYRN IPES
Sbjct: 2135 ALAHYRNVIPES 2146
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 271 bits (693), Expect = 3e-71
Identities = 127/192 (66%), Positives = 154/192 (80%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S
Sbjct: 512 FNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCS 571
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
+G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV
Sbjct: 572 GEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWV 630
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
+FG+ S LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++
Sbjct: 631 KNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQM 690
Query: 541 ALVHYRNCIPES 576
L HYRN IPES
Sbjct: 691 PLCHYRNSIPES 702
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 271 bits (693), Expect = 3e-71
Identities = 127/192 (66%), Positives = 154/192 (80%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F RVRSF++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S
Sbjct: 1938 FNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCS 1997
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
+G+KAHFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV
Sbjct: 1998 GEGDKAHFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWV 2056
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
+FG+ S LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++
Sbjct: 2057 KNFGRPSQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQM 2116
Query: 541 ALVHYRNCIPES 576
L HYRN IPES
Sbjct: 2117 PLCHYRNSIPES 2128
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 180 bits (457), Expect = 6e-44
Identities = 93/192 (48%), Positives = 123/192 (64%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
FQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S
Sbjct: 520 FQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTS 579
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
+ GN+ HF L V GP YKP + +VST PLK G G VP++ G G+G LPT WV
Sbjct: 580 DIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWV 639
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
F + + L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A KLL +
Sbjct: 640 HRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKT 699
Query: 541 ALVHYRNCIPES 576
AL YRN IPES
Sbjct: 700 ALNLYRNVIPES 711
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 180 bits (457), Expect = 6e-44
Identities = 93/192 (48%), Positives = 123/192 (64%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
FQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S
Sbjct: 2010 FQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTS 2069
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWV 360
+ GN+ HF L V GP YKP + +VST PLK G G VP++ G G+G LPT WV
Sbjct: 2070 DIGNQVHFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWV 2129
Query: 361 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQRD 540
F + + L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A KLL +
Sbjct: 2130 HRFMRPTQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKT 2189
Query: 541 ALVHYRNCIPES 576
AL YRN IPES
Sbjct: 2190 ALNLYRNVIPES 2201
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 93.2 bits (230), Expect = 1e-17
Identities = 64/199 (32%), Positives = 106/199 (53%), Gaps = 7/199 (3%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F +RSF+V+++P D TW FH +QQ G + + P + ++ + + K M ++
Sbjct: 1694 FVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MA 1751
Query: 181 EQGNKAH--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRL 342
G + H + + V GP + + C++ F+VST PL G H+P++ G G+GR+
Sbjct: 1752 NHGEQDHLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRM 1811
Query: 343 PTKNWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIK 522
P+++WV F + +++ + +IY + AGK IIF APY+A A I+F A +
Sbjct: 1812 PSQDWVRRFRR---IRHVQIRVIY----DAYAAGKTIIFKDVAPYIAGWTAAISFACA-Q 1863
Query: 523 LLNQRDALVHYRN-CIPES 576
+ RD L Y N C P S
Sbjct: 1864 QYSYRDMLNRYNNVCTPNS 1882
[10][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 65.1 bits (157), Expect = 4e-09
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 2/191 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHV 177
F VR+F++ +LP + TW ++FH Q +G P +++ GV F F+
Sbjct: 1950 FDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQ 2009
Query: 178 SEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEH-VPIKYGGGVGRLPTKN 354
+ H L + G Y +E+ ++S L G + H + +K G G+GRLP+
Sbjct: 2010 DGTELERHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNAHKLELKCGDGIGRLPS-- 2067
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
K+S L ++ L ++ LE K ++ PY+ A G + +
Sbjct: 2068 ------KASVLAQRNPGIVMRLCKQALEEKKTLVIRDERPYIGGWAMACICGESFG-FSI 2120
Query: 535 RDALVHYRNCI 567
R L Y N +
Sbjct: 2121 RSTLALYANLL 2131
[11][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q155U1_9SECO
Length = 711
Score = 64.3 bits (155), Expect = 6e-09
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 498 FTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHK 555
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG G G+ T+
Sbjct: 556 APATALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEA 615
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ + LK+ + +R+ GK I+F P+V+ AA I+FG++I +N
Sbjct: 616 SIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGASIG-MNA 667
Query: 535 RDALVHY 555
+D L++Y
Sbjct: 668 QDLLINY 674
[12][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 63.9 bits (154), Expect = 8e-09
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 498 FTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHK 555
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG G G+ T+
Sbjct: 556 APATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEA 615
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ + LK+ + +R+ GK I+F P+V+ AA I+FG+++ +N
Sbjct: 616 SIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNA 667
Query: 535 RDALVHY 555
+D L++Y
Sbjct: 668 QDLLINY 674
[13][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 63.9 bits (154), Expect = 8e-09
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 772 FTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHK 829
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG G G+ T+
Sbjct: 830 APATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEA 889
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ + LK+ + +R+ GK ++F P+V+ AA I+FG+++ +N
Sbjct: 890 SIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNA 941
Query: 535 RDALVHY 555
+D L++Y
Sbjct: 942 QDLLINY 948
[14][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 63.9 bits (154), Expect = 8e-09
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 772 FTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHK 829
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG G G+ T+
Sbjct: 830 APATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEA 889
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ + LK+ + +R+ GK I+F P+V+ AA I+FG+++ +N
Sbjct: 890 SIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNA 941
Query: 535 RDALVHY 555
+D L++Y
Sbjct: 942 QDLLINY 948
[15][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 63.9 bits (154), Expect = 8e-09
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 1984 FTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHK 2041
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG G G+ T+
Sbjct: 2042 APATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEA 2101
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ + LK+ + +R+ GK I+F P+V+ AA I+FG+++ +N
Sbjct: 2102 SIRAYRR---LKDHR----VRHMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNA 2153
Query: 535 RDALVHY 555
+D L++Y
Sbjct: 2154 QDLLINY 2160
[16][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +1
Query: 61 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 231
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 508 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 565
Query: 232 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 396
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 566 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 625
Query: 397 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAI 519
+ +R+ +GK I F PYVAN A I F +
Sbjct: 626 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 659
[17][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +1
Query: 61 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 231
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 1895 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 1952
Query: 232 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 396
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 1953 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 2012
Query: 397 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAI 519
+ +R+ +GK I F PYVAN A I F +
Sbjct: 2013 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 2046
[18][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 63.2 bits (152), Expect = 1e-08
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C SFH Q + P L+ V KF+
Sbjct: 772 FTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHK 829
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG G G+ T+
Sbjct: 830 APATALSIVLDRLAVAGPGWRNKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEA 889
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ + LK+ + +R+ GK ++F P+V+ AA I+FG+++ +N
Sbjct: 890 SIRAYRR---LKDHR----VRHMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNA 941
Query: 535 RDALVHY 555
+D L++Y
Sbjct: 942 QDLLINY 948
[19][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 62.4 bits (150), Expect = 2e-08
Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 2/187 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
F VR+F+V ++ W C +FH Q + P L+ V KF+
Sbjct: 772 FTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHK 829
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKN 354
L V GP ++ + D +VS LK G + P+ YG GVG+ T+
Sbjct: 830 APSTALSIVADRLAVAGPGWRNKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEA 889
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+ ++ K + +R+ GK I+F P+V+ AA I+FG+ + +N
Sbjct: 890 SIFAYRKYKDHRVRH-------MRDSWNEGKTIVFRCEGPFVSGWAAAISFGTTVG-MNA 941
Query: 535 RDALVHY 555
+D L +Y
Sbjct: 942 QDLLRNY 948
[20][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 58.2 bits (139), Expect = 5e-07
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 2/188 (1%)
Frame = +1
Query: 4 QRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
+ VR F++ +LP + TW + FH Q +G P +++ G F F+ +
Sbjct: 490 ESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQN 549
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNW 357
+ H L + G Y EE+ ++S L G I + +K G G+GRLP+
Sbjct: 550 GTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--- 606
Query: 358 VMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQR 537
K+S L K ++ L ++ K ++ PY+ A G + + +
Sbjct: 607 -----KASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIK 660
Query: 538 DALVHYRN 561
D L Y N
Sbjct: 661 DTLALYAN 668
[21][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 58.2 bits (139), Expect = 5e-07
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 3/191 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFM 171
F +R+F++ RLP+ + + W C ++ TG +PA VLD + K FM
Sbjct: 1997 FDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDMLVDPRCKSFM 2056
Query: 172 HVSEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTK 351
+ N + + VCGP + + + L G G + + G +PT
Sbjct: 2057 LPAGPANWSMPIADRIFVCGPKFSASGPSYTLCFNRLAAGETGVQIKPVHAATQGAMPTA 2116
Query: 352 NWVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLN 531
+V SF ++ K L E+G + F APY A I+F SA
Sbjct: 2117 KFVESF------RSIKKRPELELAISAYESGSNLYFKGCAPYNDIWACAISFCSAFGYAQ 2170
Query: 532 QRDALVHYRNC 564
++ L Y NC
Sbjct: 2171 KQVLLHMYDNC 2181
[22][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 58.2 bits (139), Expect = 5e-07
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 2/188 (1%)
Frame = +1
Query: 4 QRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVS 180
+ VR F++ +LP + TW + FH Q +G P +++ G F F+ +
Sbjct: 1949 ESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQN 2008
Query: 181 EQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNW 357
+ H L + G Y EE+ ++S L G I + +K G G+GRLP+
Sbjct: 2009 GTELERHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS--- 2065
Query: 358 VMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQR 537
K+S L K ++ L ++ K ++ PY+ A G + + +
Sbjct: 2066 -----KASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIK 2119
Query: 538 DALVHYRN 561
D L Y N
Sbjct: 2120 DTLALYAN 2127
[23][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 57.8 bits (138), Expect = 6e-07
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 2/191 (1%)
Frame = +1
Query: 1 FQRVRSFFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHV 177
F+ VR+F+ +LP + TW ESFH Q++G + P +++ G F F
Sbjct: 1949 FESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLIEISHGAAFASFTQQ 2008
Query: 178 SEQGNKAHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGE-HVPIKYGGGVGRLPTKN 354
+ + H L + G Y E + ++S + G + + G G+GRLP+K
Sbjct: 2009 AGTELEKHDICPGLSIAGTKYIATENEIVLSLSSVLPGDRNVFKLDLPCGDGIGRLPSKC 2068
Query: 355 WVMSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAIKLLNQ 534
+++ K L+ L + + K ++ PY+ A G + Q
Sbjct: 2069 SILNLRKPG--------LVMRLCKRAQDEKKTLVIRDERPYIGAWAVACICGESFG-FGQ 2119
Query: 535 RDALVHYRNCI 567
+ L Y N +
Sbjct: 2120 QSVLALYANLL 2130