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[1][TOP]
>UniRef100_A8W7G1 Putative RNA-dependent RNA polymerase n=1 Tax=Primula malacoides
virus China/Mar2007 RepID=A8W7G1_9VIRU
Length = 723
Score = 340 bits (871), Expect = 6e-92
Identities = 163/193 (84%), Positives = 173/193 (89%)
Frame = +2
Query: 2 GTGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQ 181
GTGYHNRYSFKQ+AHAKYSHP EYA K SKGYFYNATYENARTL+H IK YGLPFN+
Sbjct: 222 GTGYHNRYSFKQRAHAKYSHPEEYALKSTSKGYFYNATYENARTLVHLIKTYGLPFNMQF 281
Query: 182 ADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIEL 361
A K++LTD + YI +AN FFNDYPTLLFTRNHISKR G LKVRPVYAVDDIFIIIEL
Sbjct: 282 ACPKSDLTDEQINLYISKANQFFNDYPTLLFTRNHISKRSGTLKVRPVYAVDDIFIIIEL 341
Query: 362 MLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDI 541
MLTFPLTIQARKPSCCIMYGLETIRGSN YI+++AR YSTFFSLDWSSYDQRLPRVITDI
Sbjct: 342 MLTFPLTIQARKPSCCIMYGLETIRGSNHYIDRLARPYSTFFSLDWSSYDQRLPRVITDI 401
Query: 542 YYTDFLRSLIVIN 580
YYTDFLRSLIVIN
Sbjct: 402 YYTDFLRSLIVIN 414
[2][TOP]
>UniRef100_Q6BE43 RNA-dependent RNA polymerase n=1 Tax=Helicobasidium mompa
partitivirus V1-1 RepID=Q6BE43_9VIRU
Length = 706
Score = 232 bits (591), Expect = 2e-59
Identities = 108/193 (55%), Positives = 138/193 (71%)
Frame = +2
Query: 2 GTGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQ 181
GTGY NR+S+ +AHA ++HP +Y + SKGY+ N T + ART++H +K++ LPFN
Sbjct: 216 GTGYFNRFSYDAQAHASFAHPEQYHDRHTSKGYYINTTMQYARTIVHRLKQFALPFNP-- 273
Query: 182 ADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIEL 361
D D FF PT+LFTRNHIS RDG LK RPVYAVDD+F+I+E+
Sbjct: 274 -------KDFDSSSIFSRMRFFFLTRPTMLFTRNHISDRDGNLKQRPVYAVDDLFLILEV 326
Query: 362 MLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDI 541
MLTFPL + AR P CCIMYGLETIRGSN +I+ A+ + ++F++DWS YDQRLPR ITD+
Sbjct: 327 MLTFPLLVMARLPECCIMYGLETIRGSNHWIDSTAKRFRSYFTIDWSQYDQRLPRCITDL 386
Query: 542 YYTDFLRSLIVIN 580
YYTDFL SLI+IN
Sbjct: 387 YYTDFLESLIIIN 399
[3][TOP]
>UniRef100_Q9YX75 Putative RNA dependent RNA polymerase n=1 Tax=Fusarium poae virus 1
RepID=Q9YX75_9VIRU
Length = 673
Score = 219 bits (558), Expect = 1e-55
Identities = 107/193 (55%), Positives = 136/193 (70%)
Frame = +2
Query: 2 GTGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQ 181
GTGYHNR S + HA +SHP EY +K SKGY+ NA E+AR+LIH+IK YG PF
Sbjct: 215 GTGYHNRRSHEMNIHALFSHPKEYESKRTSKGYYVNAFLESARSLIHWIKLYGNPFRHCP 274
Query: 182 ADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIEL 361
+D L + FF PT+LFTRNHIS RDG LK RPVYAVDD+F+ IE
Sbjct: 275 SDLAQSLRE------------FFLQRPTMLFTRNHISDRDGILKQRPVYAVDDLFLTIES 322
Query: 362 MLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDI 541
MLTFP + ARKP CCIMYGLETIRGSN+ +++IA DY +FF++DWS +DQRLP VI +
Sbjct: 323 MLTFPAHVIARKPECCIMYGLETIRGSNQILDKIASDYKSFFTIDWSGFDQRLPWVIVKL 382
Query: 542 YYTDFLRSLIVIN 580
++T+++ L+V+N
Sbjct: 383 FFTEYIPRLLVVN 395
[4][TOP]
>UniRef100_Q50LH7 Putative RNA-dependent RNA polymerase n=1 Tax=Rosellinia necatrix
partitivirus 1-W8 RepID=Q50LH7_9VIRU
Length = 709
Score = 208 bits (529), Expect = 3e-52
Identities = 106/196 (54%), Positives = 132/196 (67%), Gaps = 4/196 (2%)
Frame = +2
Query: 5 TGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQA 184
TGY R+S + HA Y+ YA +P SKGYF+N YE +RT +H IKE+G PF
Sbjct: 218 TGYFQRFSTFFRTHAYYARNKLYALRPTSKGYFFNTVYEFSRTWMHHIKEHGYPF----- 272
Query: 185 DDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELM 364
+ D + F + T+LFTRNHIS RDG LK RPVYAVDD FI+ ELM
Sbjct: 273 -----VPSHDALDNARQYRIFMQKHVTMLFTRNHISDRDGFLKQRPVYAVDDFFILCELM 327
Query: 365 LTFPLTIQARKP----SCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVI 532
++FPL + AR P CIMY ETIRGSNRY++ IARD+ +FF++DWSS+DQR+PRVI
Sbjct: 328 ISFPLHVMARYPINGIKSCIMYSFETIRGSNRYLDSIARDFISFFTIDWSSFDQRVPRVI 387
Query: 533 TDIYYTDFLRSLIVIN 580
TDI++TDFLR LIVIN
Sbjct: 388 TDIFWTDFLRQLIVIN 403
[5][TOP]
>UniRef100_D0EIN9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pleurotus ostreatus
virus 1 RepID=D0EIN9_9VIRU
Length = 502
Score = 208 bits (529), Expect = 3e-52
Identities = 104/193 (53%), Positives = 131/193 (67%)
Frame = +2
Query: 2 GTGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQ 181
GTGY NR+SF + HA +S P Y + SKGYF N E AR+ IH IK +G PF+ +
Sbjct: 217 GTGYFNRHSFAARIHAMFSAPKLYERRTTSKGYFINYFLETARSTIHSIKLHGYPFDPSK 276
Query: 182 ADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIEL 361
DK D SF P +LFTRNHIS RDG LK RPVYA+DD+FI +E
Sbjct: 277 VPDKG-----------DALRSFILKRPVMLFTRNHISDRDGNLKQRPVYAMDDLFIRLES 325
Query: 362 MLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDI 541
+TFPL + ARK CCIMYG ETIRGSNR I+++A +Y ++F++DWS +DQRLPRVITDI
Sbjct: 326 KITFPLHVMARKIECCIMYGYETIRGSNRQIDKLASNYKSYFTIDWSGFDQRLPRVITDI 385
Query: 542 YYTDFLRSLIVIN 580
++TDFL +IVI+
Sbjct: 386 FWTDFLERMIVIS 398
[6][TOP]
>UniRef100_Q9Q9X2 Putative RNA-dependent RNA polymerase n=1 Tax=Rhizoctonia solani
virus 717 RepID=Q9Q9X2_9VIRU
Length = 730
Score = 207 bits (526), Expect = 6e-52
Identities = 98/193 (50%), Positives = 131/193 (67%)
Frame = +2
Query: 2 GTGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQ 181
GTGYHNR+S+ +++ A + HP YA KP SKGYF+NAT R L+H IK G PF+
Sbjct: 245 GTGYHNRHSYFRRSFAHFCHPELYAEKPTSKGYFFNATKHENRFLVHKIKHSGYPFDFTS 304
Query: 182 ADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIEL 361
D+ + F +PT++FTRNHISKRDG LKVRPVYAVD++F+ +E
Sbjct: 305 DSDRNS-----------KMADFLKSFPTMMFTRNHISKRDGTLKVRPVYAVDELFLDLEC 353
Query: 362 MLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDI 541
ML FP T+QARKP CCIMYGLETIRGSN ++ +A+ + +F ++DWS YDQRLP I
Sbjct: 354 MLAFPATVQARKPECCIMYGLETIRGSNIKLDSLAQGFISFATIDWSGYDQRLPWFIVRA 413
Query: 542 YYTDFLRSLIVIN 580
++ +L SL++I+
Sbjct: 414 FFFIYLPSLLIIS 426
[7][TOP]
>UniRef100_Q5GHF1 RNA-dependent RNA polymerase n=1 Tax=Pleurotus ostreatus virus 1
RepID=Q5GHF1_9VIRU
Length = 706
Score = 206 bits (523), Expect = 1e-51
Identities = 105/193 (54%), Positives = 130/193 (67%)
Frame = +2
Query: 2 GTGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQ 181
GTGY NR+SF + HA +S P Y + SKGYF N E AR+ IH IK +G PF+
Sbjct: 217 GTGYFNRHSFAARIHAMFSAPRLYERRTTSKGYFINYFLETARSTIHNIKLHGFPFD--- 273
Query: 182 ADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIEL 361
S V SF PT+LFTRNHIS RDG LK RPVYA+DD+FI +E
Sbjct: 274 --------PSKVPDLGSALRSFILKRPTMLFTRNHISDRDGNLKQRPVYAMDDLFIRLES 325
Query: 362 MLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDI 541
M+TFPL + ARK CCIMYG ETIRGSNR I++IA + +FF++DWS +DQRLPRVITDI
Sbjct: 326 MITFPLHVMARKIECCIMYGYETIRGSNRQIDKIASSFRSFFTIDWSGFDQRLPRVITDI 385
Query: 542 YYTDFLRSLIVIN 580
+++DFL +IVI+
Sbjct: 386 FWSDFLERMIVIS 398
[8][TOP]
>UniRef100_Q85055 Atkinsonella hypoxylon virus segment 1 n=1 Tax=Atkinsonella
hypoxylon virus RepID=Q85055_AHV
Length = 665
Score = 142 bits (359), Expect = 1e-32
Identities = 82/190 (43%), Positives = 113/190 (59%)
Frame = +2
Query: 11 YHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQADD 190
Y + +S +KAHA SHP ++AT P K YF N+ R+ +H IKEYG PF
Sbjct: 182 YFHNHSRDRKAHAAKSHP-DFATGPTKKSYFINSHLFFDRSTVHNIKEYGFPFR------ 234
Query: 191 KTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLT 370
TDS + + + +F PT L R+HISKRD LKVRPVY I+I IE ML
Sbjct: 235 --PTTDSARNETL--LDLWFKKVPTELLVRSHISKRDN-LKVRPVYNAPMIYIRIECMLF 289
Query: 371 FPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYT 550
+PL QARK CCIMYGLETIRG +E+I+ +++F +DWS +D P I++ ++
Sbjct: 290 YPLLAQARKRDCCIMYGLETIRGGMNELERISNAFNSFLLIDWSRFDHLAPFTISNFFFK 349
Query: 551 DFLRSLIVIN 580
+L + I+I+
Sbjct: 350 KWLPTKILID 359
[9][TOP]
>UniRef100_Q6X9T6 Putative RNA-dependent RNA polymerase n=1 Tax=Ceratocystis polonica
partitivirus RepID=Q6X9T6_9VIRU
Length = 663
Score = 129 bits (323), Expect = 2e-28
Identities = 75/190 (39%), Positives = 105/190 (55%)
Frame = +2
Query: 11 YHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQADD 190
Y + +S +K HA+ SH AT P K +F NA + R+ +H IK YGLPF +
Sbjct: 186 YFHNHSNARKRHAQTSHAST-ATGPTKKSWFINAHLFHDRSTVHNIKLYGLPFKPHSYEA 244
Query: 191 KTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLT 370
+ ++ +F PT L R+HIS LKVRPV IF+ IE ML
Sbjct: 245 RNKIL----------LELWFKKIPTELLVRSHISNPK-KLKVRPVNNAPMIFLRIECMLF 293
Query: 371 FPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYT 550
+PL Q RK C IMYGLETIRG IE +A +S F +DWS +DQ +P + D++Y
Sbjct: 294 YPLLAQLRKQQCSIMYGLETIRGGMMEIESLATRFSNFMMIDWSKFDQTVPFTLVDMFYQ 353
Query: 551 DFLRSLIVIN 580
D++ +LI+++
Sbjct: 354 DWIPTLILVD 363
[10][TOP]
>UniRef100_Q5DM90 RNA-dependent RNA polymerase n=1 Tax=Ceratocystis resinifera virus
1 RepID=Q5DM90_9VIRU
Length = 663
Score = 127 bits (320), Expect = 5e-28
Identities = 75/190 (39%), Positives = 104/190 (54%)
Frame = +2
Query: 11 YHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQADD 190
Y + +S +K HA+ SH AT P K +F NA + R+ +H IK YGLPF
Sbjct: 186 YFHNHSNARKRHAQTSHAST-ATGPTKKSWFINAHLFHDRSTVHNIKLYGLPFKPHSYAA 244
Query: 191 KTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLT 370
+ ++ +F PT L R+HIS LKVRPV IF+ IE ML
Sbjct: 245 RNKILQE----------LWFKKIPTELLVRSHISNPK-KLKVRPVNNAPMIFLRIECMLF 293
Query: 371 FPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYT 550
+PL Q RK C IMYGLETIRG IE +A +S F +DWS +DQ +P + D++Y
Sbjct: 294 YPLLAQLRKQQCSIMYGLETIRGGMMEIESLATRFSNFMMIDWSKFDQTVPFTLVDMFYQ 353
Query: 551 DFLRSLIVIN 580
D++ +LI+++
Sbjct: 354 DWIPTLILVD 363
[11][TOP]
>UniRef100_Q6EM35 Putative RNA-dependent RNA polymerase n=1 Tax=Ceratocystis polonica
partitivirus RepID=Q6EM35_9VIRU
Length = 663
Score = 127 bits (319), Expect = 6e-28
Identities = 78/192 (40%), Positives = 107/192 (55%), Gaps = 2/192 (1%)
Frame = +2
Query: 11 YHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPF--NIIQA 184
Y + +S +K HA+ SH AT P K +F NA + R+ +H IK YGLPF + +A
Sbjct: 186 YFHNHSNARKRHAQTSHAST-ATGPTKKSWFINAHLFHDRSTVHNIKLYGLPFKPHSYKA 244
Query: 185 DDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELM 364
++T L +F PT L R+HIS LKVRPV IF+ IE M
Sbjct: 245 RNQTLL------------ELWFKKIPTELLVRSHISNPK-KLKVRPVNNAPMIFLRIECM 291
Query: 365 LTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIY 544
L +PL Q RK C IMYG ETIRG IE +A +S F +DWS +DQ +P + D++
Sbjct: 292 LFYPLLAQLRKQQCSIMYGFETIRGGMMEIESLATRFSNFMMIDWSKFDQTVPFTLVDMF 351
Query: 545 YTDFLRSLIVIN 580
Y D++ +LI+I+
Sbjct: 352 YQDWIPTLILID 363
[12][TOP]
>UniRef100_B2L075 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pleurotus ostreatus
virus 1 RepID=B2L075_9VIRU
Length = 185
Score = 117 bits (294), Expect = 5e-25
Identities = 52/81 (64%), Positives = 68/81 (83%)
Frame = +2
Query: 338 DIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQR 517
D+FI +E M+TFPL + ARK CCIMYG ETIRGSNR I+++A +Y +FF++DWS +DQR
Sbjct: 1 DLFIRLESMITFPLHVMARKIECCIMYGYETIRGSNRQIDKLASNYKSFFTIDWSGFDQR 60
Query: 518 LPRVITDIYYTDFLRSLIVIN 580
LPRVITDI++TDFL +IVI+
Sbjct: 61 LPRVITDIFWTDFLERMIVIS 81
[13][TOP]
>UniRef100_Q8QY51 Putative RNA dependent RNA polymerase n=1 Tax=Heterobasidion
annosum P-type partitivirus RepID=Q8QY51_9VIRU
Length = 734
Score = 97.8 bits (242), Expect = 5e-19
Identities = 57/171 (33%), Positives = 91/171 (53%)
Frame = +2
Query: 68 EYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSF 247
+Y+ P SKG+F+N+ R ++H IK G P ++ KT + Y N
Sbjct: 225 DYSKNPRSKGFFFNSLLLRCRRIVHNIKYTGWPIPHDPSESKTSFLQRML--YWTLMN-- 280
Query: 248 FNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLE 427
PT+++ R+ ISK LKVRPVY +F+++E MLT L Q RKP CI++ E
Sbjct: 281 ----PTVMYVRSQISKIT-KLKVRPVYNAPMLFLMLEAMLTLGLMAQCRKPDNCILWSYE 335
Query: 428 TIRGSNRYIEQIARDYSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVIN 580
TIRG + +I+ +++ F D+S +DQ P I ++ F+ +I ++
Sbjct: 336 TIRGGMHELHRISTEFNVFMGFDYSRFDQLAPFTIIYHFWATFIPMIIRVD 386
[14][TOP]
>UniRef100_A7REC6 Putative RdRp n=1 Tax=Vicia faba partitivirus 1 RepID=A7REC6_9VIRU
Length = 576
Score = 56.2 bits (134), Expect = 2e-06
Identities = 53/187 (28%), Positives = 79/187 (42%), Gaps = 7/187 (3%)
Frame = +2
Query: 5 TGYHNRYSFKQKAHAKYSHPPEYATKPISKGYFYNATYENARTLIHFIKEYGLPFNIIQA 184
T + R FK+ H P+ + ++K YN + R IH IK
Sbjct: 142 TAENYRDLFKEAHHTDLY--PKMLDRRMTKRNLYNEMFLINRKSIHIIK----------- 188
Query: 185 DDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELM 364
+ +T KY + A F R H+ + D P KVR V+ ++ ELM
Sbjct: 189 NGRTTNDHGHDLKYWNTA-----------FARQHLVEDDDPDKVRLVFGAPSTLLMAELM 237
Query: 365 LTFPLTIQ--ARKPSCCIMYGLETIRGSNRYIEQIARD----YSTFFSLDWSSYDQRLPR 526
+PL + AR P +++G ET+ G + A D YST +LDWS +D+
Sbjct: 238 FIWPLQVSLLARGPQSPMLWGYETLTGGWSRLFSWASDTMPRYSTVLTLDWSRFDKDARH 297
Query: 527 -VITDIY 544
VI DI+
Sbjct: 298 TVIRDIH 304