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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 330 bits (847), Expect = 4e-89
Identities = 154/192 (80%), Positives = 172/192 (89%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKF
Sbjct: 384 VYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKF 443
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALME
Sbjct: 444 LKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALME 503
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
LYLHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+
Sbjct: 504 LYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGL 563
Query: 541 DFKKFMHVSEQG 576
DFKKFMHVSEQG
Sbjct: 564 DFKKFMHVSEQG 575
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 330 bits (847), Expect = 4e-89
Identities = 154/192 (80%), Positives = 172/192 (89%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKF
Sbjct: 1824 VYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKF 1883
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LKLD G++QAPLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALME
Sbjct: 1884 LKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALME 1943
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
LYLHNDP+EF RVR F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+
Sbjct: 1944 LYLHNDPREFSRVRDFYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGL 2003
Query: 541 DFKKFMHVSEQG 576
DFKKFMHVSEQG
Sbjct: 2004 DFKKFMHVSEQG 2015
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 326 bits (836), Expect = 7e-88
Identities = 155/192 (80%), Positives = 171/192 (89%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKF
Sbjct: 384 VYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKF 443
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LKLD G++QAPLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALME
Sbjct: 444 LKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALME 503
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
LYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGV
Sbjct: 504 LYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGV 563
Query: 541 DFKKFMHVSEQG 576
DFK+FMH+SEQG
Sbjct: 564 DFKRFMHMSEQG 575
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 326 bits (836), Expect = 7e-88
Identities = 155/192 (80%), Positives = 171/192 (89%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKF
Sbjct: 1826 VYGDDNLISVSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKF 1885
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LKLD G++QAPLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALME
Sbjct: 1886 LKLDNGIVQAPLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALME 1945
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
LYLHND EFQRVR F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGV
Sbjct: 1946 LYLHNDVAEFQRVRGFYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGV 2005
Query: 541 DFKKFMHVSEQG 576
DFK+FMH+SEQG
Sbjct: 2006 DFKRFMHMSEQG 2017
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 284 bits (727), Expect = 3e-75
Identities = 135/193 (69%), Positives = 163/193 (84%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE+KPF ELDFLKRKF
Sbjct: 382 VYGDDNLISVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKF 441
Query: 181 -LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALM 357
+ + G + APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+
Sbjct: 442 YVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLV 501
Query: 358 ELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSG 537
ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G
Sbjct: 502 ELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAG 561
Query: 538 VDFKKFMHVSEQG 576
+F +FM S +G
Sbjct: 562 PEFPRFMRCSGEG 574
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 284 bits (727), Expect = 3e-75
Identities = 135/193 (69%), Positives = 163/193 (84%), Gaps = 1/193 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE+KPF ELDFLKRKF
Sbjct: 1808 VYGDDNLISVSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKF 1867
Query: 181 -LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALM 357
+ + G + APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+
Sbjct: 1868 YVHPEHGQVWAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLV 1927
Query: 358 ELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSG 537
ELYLHND +EF RVRSF++ RLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G
Sbjct: 1928 ELYLHNDKEEFNRVRSFYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAG 1987
Query: 538 VDFKKFMHVSEQG 576
+F +FM S +G
Sbjct: 1988 PEFPRFMRCSGEG 2000
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 197 bits (500), Expect = 6e-49
Identities = 103/192 (53%), Positives = 130/192 (67%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+S A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+F
Sbjct: 392 VYGDDNLMSCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRF 451
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LKL+TGV+QAPLD+TAIFS L+W+TP K Q VD + EL LNV VAL E
Sbjct: 452 LKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVE-NVDTLYELALNVQVALTE 510
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
LYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G
Sbjct: 511 LYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQ 570
Query: 541 DFKKFMHVSEQG 576
+F +FMH S+ G
Sbjct: 571 EFARFMHTSDIG 582
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 197 bits (500), Expect = 6e-49
Identities = 103/192 (53%), Positives = 130/192 (67%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+S A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+F
Sbjct: 1882 VYGDDNLMSCTDKIAIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRF 1941
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LKL+TGV+QAPLD+TAIFS L+W+TP K Q VD + EL LNV VAL E
Sbjct: 1942 LKLETGVVQAPLDLTAIFSCLHWVTPHPQKMPKGGAQLQVE-NVDTLYELALNVQVALTE 2000
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
LYLH + +EFQRVR+F+ ++ +L + TWA E+FH S+QTGM + PA +D G
Sbjct: 2001 LYLHGNKEEFQRVRNFYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQ 2060
Query: 541 DFKKFMHVSEQG 576
+F +FMH S+ G
Sbjct: 2061 EFARFMHTSDIG 2072
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 137 bits (345), Expect = 6e-31
Identities = 75/175 (42%), Positives = 100/175 (57%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV P +FNG+ I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F
Sbjct: 659 VYGDDNLISVKPDTMKYFNGDRIKEVLAKFKVTITDGSDKNSPVLRAKPLKQLDFLKRGF 718
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AIFSSLY++ P + + + L LN VAL E
Sbjct: 719 KVQSDGRVLAPLDLQAIFSSLYYINP----------------QGNTLNSLFLNAQVALRE 762
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLHND ++F VR+F+VT++ W C +FH Q + P L+
Sbjct: 763 LYLHNDIEQFTAVRNFYVTQIGGNFLNLPQWRHCAAFHDEQYSQWKPWAPVKFLE 817
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 137 bits (344), Expect = 8e-31
Identities = 73/175 (41%), Positives = 100/175 (57%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLIS+ P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F
Sbjct: 385 VYGDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGF 444
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AI+SSLY++ P + ++++ L LN VAL E
Sbjct: 445 RVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRE 488
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 489 LYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 543
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 137 bits (344), Expect = 8e-31
Identities = 73/175 (41%), Positives = 100/175 (57%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLIS+ P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F
Sbjct: 659 VYGDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGF 718
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AI+SSLY++ P + ++++ L LN VAL E
Sbjct: 719 RVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRE 762
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 763 LYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 817
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 137 bits (344), Expect = 8e-31
Identities = 73/175 (41%), Positives = 100/175 (57%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLIS+ P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F
Sbjct: 1871 VYGDDNLISIKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGF 1930
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AI+SSLY++ P + ++++ L LN VAL E
Sbjct: 1931 RVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRE 1974
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 1975 LYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 2029
[13][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 136 bits (342), Expect = 1e-30
Identities = 72/175 (41%), Positives = 100/175 (57%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLIS+ P +FNGE I+ TLA+ ++ ITDGSDK++P + +KP +LDFLKR F
Sbjct: 385 VYGDDNLISIKPDTMKYFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGF 444
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AI+SSLY++ P + +++ L LN VAL E
Sbjct: 445 RVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRE 488
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 489 LYLHGDVEQFTAVRNFYVKQIGGNFLNLPQWRHCASFHDEQYSQWKPWSPVKFLE 543
[14][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 135 bits (341), Expect = 2e-30
Identities = 73/175 (41%), Positives = 98/175 (56%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLIS+ P +FNGE I+ LA KV ITDGSDK++P + +KP +LDFLKR F
Sbjct: 659 VYGDDNLISIKPDTMKYFNGEQIKTILARYKVTITDGSDKNSPVLRAKPLKQLDFLKRGF 718
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AI+SSLY++ P + +++ L LN VAL E
Sbjct: 719 RVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRE 762
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 763 LYLHGDVEQFTAVRNFYVKQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 817
[15][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 135 bits (341), Expect = 2e-30
Identities = 73/175 (41%), Positives = 98/175 (56%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLIS+ P +FNGE I+ LA KV ITDGSDK++P + +KP +LDFLKR F
Sbjct: 659 VYGDDNLISIKPDTMKYFNGEQIKTILANIKVTITDGSDKNSPVLRAKPLKQLDFLKRGF 718
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + APLD+ AI+SSLY++ P + +++ L LN VAL E
Sbjct: 719 RVESDGRVLAPLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRE 762
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH D ++F VR+F+V ++ W C SFH Q + P L+
Sbjct: 763 LYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSPVKFLE 817
[16][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 134 bits (336), Expect = 7e-30
Identities = 74/175 (42%), Positives = 101/175 (57%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLI+V PS FNG+ I+ T+A+ +V ITDGSDK +PT+ KP LDFLKR F
Sbjct: 1580 VYGDDNLIAVDPSILEVFNGDVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGF 1639
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
D G + APLD TAI+SSL+W+ DV+ L N AL+E
Sbjct: 1640 KLADNGQVYAPLDKTAIYSSLHWVAGRGQ---------------DVMSALKDNARSALIE 1684
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
++ H D EF +RSF+V+++P D TW FH +QQ G + + P + ++
Sbjct: 1685 MWAHQDKAEFVELRSFYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASME 1738
[17][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 132 bits (333), Expect = 1e-29
Identities = 80/189 (42%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLI+V PS F GE I+ TLA KK+ ITDGSDK +P +E+KP +LDFLKR F
Sbjct: 1883 VYGDDNLIAVDPSMQKIFTGEVIKKTLARKKITITDGSDKLSPVLEAKPLAQLDFLKRSF 1942
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
L D+G + LD T I+SSL +L S + D I L NV AL E
Sbjct: 1943 LVSDSGQVMPALDRTCIYSSLLYLR---------------SADCDPIPLLHQNVQNALQE 1987
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHM 531
LY D +EF +R+F++ RLP+ + + W C ++ TG +PA VLD +
Sbjct: 1988 LYYRQDREEFDNLRTFYLERLPMWRNGQHRLLDWNQCAEHWRARYTGCPSDNPAGVLDML 2047
Query: 532 SGVDFKKFM 558
K FM
Sbjct: 2048 VDPRCKSFM 2056
[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 127 bits (319), Expect = 6e-28
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 1/185 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDN+ +VA S +F G+A+++ +A+ V ITDG DK TI ++P EL+FLKR F+
Sbjct: 1836 YGDDNVFTVAQSVMQYFTGDALKMQMAKLGVTITDGKDKSLSTIPARPLLELEFLKRGFV 1895
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
+ G+I APL+ +I SSL ++ S D++++L+ NVN AL+EL
Sbjct: 1896 RSSGGMINAPLEKLSIMSSLVYIR---------------SDGSDMLQKLLDNVNTALVEL 1940
Query: 364 YLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
YLH D F+ VR+F+ +LP + TW ESFH Q++G + P +++ G
Sbjct: 1941 YLHGDRTYFESVRAFYFEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQGLIEISHGA 2000
Query: 541 DFKKF 555
F F
Sbjct: 2001 AFASF 2005
[19][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 119 bits (297), Expect = 2e-25
Identities = 68/186 (36%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDN+ +V+ S F G+A++ +A V ITDG DK TI ++P EL+FLKR
Sbjct: 1837 YGDDNVFTVSQSIMESFTGDALKAEMANVGVTITDGKDKSLATIPARPLLELEFLKRGIK 1896
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K + G+I APL+ +I SSL ++ S D++++LV NVN AL+EL
Sbjct: 1897 KGNGGMIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVEL 1941
Query: 364 YLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
+LH D + F VR+F++ +LP + TW ++FH Q +G P +++ GV
Sbjct: 1942 FLHQDKEYFDSVRNFYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGV 2001
Query: 541 DFKKFM 558
F F+
Sbjct: 2002 GFASFV 2007
[20][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 117 bits (292), Expect = 8e-25
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDN+ +V+ S + F G+A++ +A V ITDG DK TI ++P EL+FLKR F
Sbjct: 376 YGDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFK 435
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K + G+I APL+ +I SSL ++ S D++++LV NVN AL+EL
Sbjct: 436 KGNGGLIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVEL 480
Query: 364 YLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
YLH D + + VR F++ +LP + TW + FH Q +G P +++ G
Sbjct: 481 YLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGA 540
Query: 541 DFKKFM 558
F F+
Sbjct: 541 SFASFV 546
[21][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 117 bits (292), Expect = 8e-25
Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDN+ +V+ S + F G+A++ +A V ITDG DK TI ++P EL+FLKR F
Sbjct: 1835 YGDDNVFTVSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFK 1894
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K + G+I APL+ +I SSL ++ S D++++LV NVN AL+EL
Sbjct: 1895 KGNGGLIYAPLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVEL 1939
Query: 364 YLHNDPKEFQRVRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
YLH D + + VR F++ +LP + TW + FH Q +G P +++ G
Sbjct: 1940 YLHQDREYSESVRDFYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGA 1999
Query: 541 DFKKFM 558
F F+
Sbjct: 2000 SFASFV 2005
[22][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 114 bits (286), Expect = 4e-24
Identities = 69/175 (39%), Positives = 92/175 (52%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
+YGDDNLI+V P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F
Sbjct: 376 IYGDDNLIAVHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRF 435
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
KL+ G + APLD+ ++++SL +T H L NV+ AL+E
Sbjct: 436 RKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLE 480
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH + F +R F+ R +W +FH Q +G+ P + D
Sbjct: 481 LYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD 533
[23][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 114 bits (286), Expect = 4e-24
Identities = 69/175 (39%), Positives = 92/175 (52%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
+YGDDNLI+V P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F
Sbjct: 1763 IYGDDNLIAVHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRF 1822
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
KL+ G + APLD+ ++++SL +T H L NV+ AL+E
Sbjct: 1823 RKLNDGTVYAPLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLE 1867
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLD 525
LYLH + F +R F+ R +W +FH Q +G+ P + D
Sbjct: 1868 LYLHGNETWFNHLRDFY--RKSHAWVNLPSWREAFAFHQGQISGVTPWTPYQMFD 1920
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 87.4 bits (215), Expect = 7e-16
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+++ +F+G I+ +A + ITDG+DK + T+E KP L+FLKR F
Sbjct: 1814 VYGDDNLLTIKEEVIPFFDGPVIKREMASVGITITDGTDKSSLTLERKPLASLEFLKRGF 1873
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
+ G++ APLD T++++ L++L + F + NV L E
Sbjct: 1874 RVQENGLVVAPLDKTSMYTRLFYLPLALMAFIPGYFSKG-------------NVKSFLEE 1920
Query: 361 LYLH-NDPKEFQRVRSFFVTRLP 426
+ LH N +EF RVR+F+V++ P
Sbjct: 1921 IVLHPNHRREFYRVRNFYVSKAP 1943
[25][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 84.7 bits (208), Expect = 5e-15
Identities = 57/175 (32%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+P FNG+ ++ +A V ITDG DK PT+E +P + DFLKR F
Sbjct: 412 VYGDDNLISVSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGF 471
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ V AP + +++++ L++++ Y+G + VNV + E
Sbjct: 472 IQRSELVWDAPEERSSLYTQLHYVSTKMQSLE-----DAYTGNL---------VNV-IRE 516
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLV-DQFRTWAFCESFHSSQQTGMLRHDPASVL 522
LY+H+ PKE +R + LP L + T ++F++ Q+ G + V+
Sbjct: 517 LYMHS-PKEASDLRRKALRDLPWLSRSKIGTMENVQAFYAMQRAGYRMDESIDVI 570
[26][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 80.1 bits (196), Expect = 1e-13
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F
Sbjct: 1528 VYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNF 1587
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ + AP D +++S L++++ +++ E ++N+ L E
Sbjct: 1588 KQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRE 1632
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESFHSSQQ 486
LYLH+ P+E +++R ++R+ L T A E FHS Q+
Sbjct: 1633 LYLHS-PEEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[27][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 79.7 bits (195), Expect = 1e-13
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKK-VKITDGSDKDAPTIESKPFWELDFLKRK 177
VYGDDN++ + P+ S FNG I+ + E+ +KITDG+DK +P I+++P + +FLKR
Sbjct: 1939 VYGDDNVLGIHPNIESVFNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQCEFLKRT 1998
Query: 178 FLK-LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVAL 354
+ K G+ +APL T+IFS L ++ + Y + +++ NV +L
Sbjct: 1999 WRKDRQYGLYRAPLVETSIFSCLRYV-----------RLQNYDWQAPLLQ----NVQGSL 2043
Query: 355 MELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAF--CESFHSSQQTGMLRHDPAS 516
E LH P+ R+ F P V++ + + C + + + G PAS
Sbjct: 2044 YEASLHG-PEMHDRIYKHFAMHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPAS 2098
[28][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 79.0 bits (193), Expect = 3e-13
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 4/176 (2%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEK-KVKITDGSDKDAPTIESKPFWELDFLKRK 177
VYGDDN++ + P+ S FNG AI+ + E+ +KITDG+DK +P I ++P + +FLKR
Sbjct: 1940 VYGDDNVLGIHPNIESAFNGNAIKAYMKEELGIKITDGADKLSPVICARPLEQCEFLKRT 1999
Query: 178 FLK-LDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVAL 354
+ K G+ +APL T+I+S L ++ + Y + +++ NV +L
Sbjct: 2000 WRKDRQYGLYRAPLVETSIYSCLRYV-----------RLQNYDWQAPLLQ----NVQGSL 2044
Query: 355 MELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAF--CESFHSSQQTGMLRHDPAS 516
E LH P R+ F T P V++ + + C + + + G PAS
Sbjct: 2045 YEASLHG-PDMHARIYKHFATHFPKWVEEHELYTYEQCRTRFIAAKNGDFNFHPAS 2099
[29][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F
Sbjct: 387 VYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNF 446
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ + AP D +++S L++++ +++ E ++N+ L E
Sbjct: 447 KQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRE 491
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESFHSSQQ 486
LYLH+ P+E +R+R ++ + L T A E FHS Q+
Sbjct: 492 LYLHS-PEEARRLRRKALSCIEWLQKADVPTIAQIEEFHSMQR 533
[30][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F
Sbjct: 1528 VYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNF 1587
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ + AP D +++S L++++ +++ E ++N+ L E
Sbjct: 1588 KQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRE 1632
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESFHSSQQ 486
LYLH+ P+E ++R ++R+ L T A E FHS Q+
Sbjct: 1633 LYLHS-PEEACQLRRRALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[31][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 78.6 bits (192), Expect = 3e-13
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + E DFLKR F
Sbjct: 1527 VYGDDNLISVHEYVKPYFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNF 1586
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ + AP D +++S L++++ +++ E ++N+ L E
Sbjct: 1587 KQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRE 1631
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESFHSSQQ 486
LYLH+ P+E +R+R ++ + L T A E FHS Q+
Sbjct: 1632 LYLHS-PEEARRLRRKALSCIEWLQKADVPTIAQIEEFHSMQR 1673
[32][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 78.2 bits (191), Expect = 4e-13
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV +F+G ++ LA + ITDG DK + T++ + + DFLKR F
Sbjct: 1528 VYGDDNLISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNF 1587
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ + AP D +++S L++++ +++ E ++N+ L E
Sbjct: 1588 KQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRE 1632
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESFHSSQQ 486
LYLH+ P+E +++R ++R+ L T A E FHS Q+
Sbjct: 1633 LYLHS-PEEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[33][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 78.2 bits (191), Expect = 4e-13
Identities = 47/133 (35%), Positives = 76/133 (57%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV+ A+ FNG ++ +A+ V ITDG DK +PT+E + DFLKR F
Sbjct: 1536 YGDDNLISVSHVVANVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF- 1594
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
KL+ V +P + +++++ L+++ + +D E ++N+N L EL
Sbjct: 1595 KLNGLVYDSPEEKSSLWAQLHYVNTT---------------SLDKQEAYLVNLNNVLKEL 1639
Query: 364 YLHNDPKEFQRVR 402
Y+H+ P+E +R
Sbjct: 1640 YMHS-PEEMNMIR 1651
[34][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 76.6 bits (187), Expect = 1e-12
Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDN ISV +F+G ++ LA + ITDG DK + T++ + + DFLKR F
Sbjct: 1528 VYGDDNFISVHEYVKPYFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNF 1587
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
++ + AP D +++S L++++ +++ E ++N+ L E
Sbjct: 1588 KQMSNVLWVAPEDKASLWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRE 1632
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESFHSSQQ 486
LYLH+ P+E +++R ++R+ L T A E FHS Q+
Sbjct: 1633 LYLHS-PEEARQLRRKALSRIEWLQKADVPTIAQIEEFHSMQR 1674
[35][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 75.9 bits (185), Expect = 2e-12
Identities = 46/133 (34%), Positives = 76/133 (57%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV+ AS FNG ++ +A+ V ITDG DK +PT+E + DFLKR F
Sbjct: 389 YGDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF- 447
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
KL+ + +P + +++++ L+++ + +D E ++N+N L EL
Sbjct: 448 KLNGLIYDSPEEKSSLWAQLHYVNTT---------------NLDKQEAYLVNLNNVLKEL 492
Query: 364 YLHNDPKEFQRVR 402
Y+++ P+E +R
Sbjct: 493 YMYS-PEEMNMLR 504
[36][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 75.9 bits (185), Expect = 2e-12
Identities = 46/133 (34%), Positives = 76/133 (57%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV+ AS FNG ++ +A+ V ITDG DK +PT+E + DFLKR F
Sbjct: 1536 YGDDNLISVSHVVASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF- 1594
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
KL+ + +P + +++++ L+++ + +D E ++N+N L EL
Sbjct: 1595 KLNGLIYDSPEEKSSLWAQLHYVNTT---------------NLDKQEAYLVNLNNVLKEL 1639
Query: 364 YLHNDPKEFQRVR 402
Y+++ P+E +R
Sbjct: 1640 YMYS-PEEMNMLR 1651
[37][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 74.3 bits (181), Expect = 6e-12
Identities = 35/40 (87%), Positives = 37/40 (92%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK 120
VYGDDNLISV+PS ASWF GEAIRV LAEKK+KITDGSDK
Sbjct: 37 VYGDDNLISVSPSIASWFTGEAIRVCLAEKKIKITDGSDK 76
[38][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 69.3 bits (168), Expect = 2e-10
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV +F+G ++ +A + ITDG DK + T+E + + DFLKR FL
Sbjct: 389 YGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFL 448
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K + + AP + ++++ L+++ + + + N+ L EL
Sbjct: 449 KRSSVLWDAPEEKASLWAQLHYVNVNNCEMQV---------------AYMTNLVNVLREL 493
Query: 364 YLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
Y+H DP E R + +P L T + F++ Q+ LR+ P DH +
Sbjct: 494 YMH-DPTEMVEFRRLALKSIPWLNTTDLPTLYQVKEFYAEQR---LRNIP----DHNDSL 545
Query: 541 D 543
D
Sbjct: 546 D 546
[39][TOP]
>UniRef100_Q9WNW0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WNW0_9SECO
Length = 1870
Score = 69.3 bits (168), Expect = 2e-10
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 VYGDDNLISVSDAISSRFDGNFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1614
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D KE + R+ + L + +Q FHS Q G+
Sbjct: 1660 LWLH-DVKEAEEFRNKVLRNLRWIGHEQLLNMQQLAVFHSEQMNGV 1704
[40][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 69.3 bits (168), Expect = 2e-10
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 1/181 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV +F+G ++ +A + ITDG DK + T+E + + DFLKR FL
Sbjct: 1540 YGDDNLISVNAVVKPYFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFL 1599
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K + + AP + ++++ L+++ + + + N+ L EL
Sbjct: 1600 KRSSVLWDAPEEKASLWAQLHYVNVNNCEMQV---------------AYMTNLVNVLREL 1644
Query: 364 YLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGV 540
Y+H DP E R + +P L T + F++ Q+ LR+ P DH +
Sbjct: 1645 YMH-DPTEMVEFRRLALKSIPWLNTTDLPTLYQVKEFYAEQR---LRNIP----DHNDSL 1696
Query: 541 D 543
D
Sbjct: 1697 D 1697
[41][TOP]
>UniRef100_UPI0000163DD4 RNA-dependent RNA polymerase n=1 Tax=Patchouli mild mosaic virus
RepID=UPI0000163DD4
Length = 699
Score = 68.9 bits (167), Expect = 3e-10
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 384 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 443
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 444 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 488
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D KE + R+ + L + +Q FHS Q G+
Sbjct: 489 LWLH-DVKEAKEFRNKVLRNLRWIGHEQLLNMQQLAVFHSEQMNGV 533
[42][TOP]
>UniRef100_Q8V978 Polyprotein n=1 Tax=Patchouli mild mosaic virus RepID=Q8V978_9SECO
Length = 1870
Score = 68.9 bits (167), Expect = 3e-10
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1614
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D KE + R+ + L + +Q FHS Q G+
Sbjct: 1660 LWLH-DVKEAKEFRNKVLRNLRWIGHEQLLNMQQLAVFHSEQMNGV 1704
[43][TOP]
>UniRef100_Q9YM10 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9YM10_9SECO
Length = 1870
Score = 68.6 bits (166), Expect = 3e-10
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1555 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1614
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1615 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1659
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D KE + R+ + L + +Q FHS Q G+
Sbjct: 1660 LWLH-DVKEAKEFRNKVLRNLRWVGHEQLLNMQQLAVFHSEQMNGV 1704
[44][TOP]
>UniRef100_B8Y619 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Broad bean wilt
virus 2 RepID=B8Y619_9SECO
Length = 594
Score = 68.6 bits (166), Expect = 3e-10
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 279 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 338
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 339 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILCE 383
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D KE + R+ + L + +Q FHS Q G+
Sbjct: 384 LWLH-DVKEAKEFRNKVLRNLRWIGHEQLLNMQQLAVFHSEQMNGV 428
[45][TOP]
>UniRef100_UPI0000163CFC RNA-dependent RNA polymerase n=1 Tax=Cowpea severe mosaic virus
RepID=UPI0000163CFC
Length = 712
Score = 68.2 bits (165), Expect = 4e-10
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV + F+G ++ L + ITDG DK +P + + + DFLKR F
Sbjct: 387 YGDDNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFK 446
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K V P + ++++ L+++T + + H E ++NV + EL
Sbjct: 447 KESDVVWVGPEEKESLWAQLHYVTTNNLEKH---------------EAYLVNVVNVIREL 491
Query: 364 YLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMS 534
YLH DP+E +R + + L + T A + F++ Q+ D LD +
Sbjct: 492 YLH-DPREAAELRRKAIQNVDFLKENPKDLPTMAAIKEFYNMQRQQQF-VDSNDNLDSLL 549
Query: 535 GVDF 546
DF
Sbjct: 550 NPDF 553
[46][TOP]
>UniRef100_P36312 RNA-directed RNA polymerase n=1 Tax=Cowpea severe mosaic virus
(strain DG) RepID=POL1_CPSMV
Length = 1858
Score = 68.2 bits (165), Expect = 4e-10
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 3/184 (1%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV + F+G ++ L + ITDG DK +P + + + DFLKR F
Sbjct: 1533 YGDDNLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVLNFRNLEDCDFLKRGFK 1592
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
K V P + ++++ L+++T + + H E ++NV + EL
Sbjct: 1593 KESDVVWVGPEEKESLWAQLHYVTTNNLEKH---------------EAYLVNVVNVIREL 1637
Query: 364 YLHNDPKEFQRVRSFFVTRLPLLVD---QFRTWAFCESFHSSQQTGMLRHDPASVLDHMS 534
YLH DP+E +R + + L + T A + F++ Q+ D LD +
Sbjct: 1638 YLH-DPREAAELRRKAIQNVDFLKENPKDLPTMAAIKEFYNMQRQQQF-VDSNDNLDSLL 1695
Query: 535 GVDF 546
DF
Sbjct: 1696 NPDF 1699
[47][TOP]
>UniRef100_Q9WP48 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q9WP48_9SECO
Length = 1769
Score = 67.8 bits (164), Expect = 6e-10
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1454 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKVGIEFRRLENCDFLKRSF 1513
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1514 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 1558
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D +E + R+ + L + +Q FHS Q G+
Sbjct: 1559 LWLH-DVREAKEFRNKVLRNLRWIGHEQLLNMQQLAVFHSEQMNGV 1603
[48][TOP]
>UniRef100_UPI0000163D14 RNA-dependent RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=UPI0000163D14
Length = 711
Score = 67.4 bits (163), Expect = 8e-10
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV +F+G+ ++ +LA+ V ITDG DK + + + E DFLKR F+
Sbjct: 388 YGDDNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFV 447
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
+ + + AP D +++S L+++ + +K Y + NV L EL
Sbjct: 448 QRSSTIWDAPEDKASLWSQLHYV-----NCNNCEKEVAY----------LTNVVNVLREL 492
Query: 364 YLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESF--HSSQQTGMLRHDPASVL 522
Y+H+ P+E R + ++ + T A + F + QQ G +D +L
Sbjct: 493 YMHS-PREATEFRRKVLKKVSWITSGDLPTLAQLQEFYEYQRQQGGADNNDTCDLL 547
[49][TOP]
>UniRef100_B5L2C4 Polyprotein n=1 Tax=Mikania micrantha mosaic virus RepID=B5L2C4_9SECO
Length = 1853
Score = 67.4 bits (163), Expect = 8e-10
Identities = 47/164 (28%), Positives = 73/164 (44%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S FNGE + + +TDG DK I + + DFLKR F
Sbjct: 1533 VYGDDNLISVSDAISSKFNGEFLVDFFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNF 1592
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
L G P+ +++ L+++ K +++ + V N+N L E
Sbjct: 1593 KVLPDGEWVGPMSRESLWPQLHFVRAKK---------------LEMADAYVANLNNILRE 1637
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFCESFHSSQQTG 492
L+LH + + R T L + T F+ Q+ G
Sbjct: 1638 LWLHGSEEVTELRRMAVKTLKWLEPSRLLTLGQIAEFYEEQRNG 1681
[50][TOP]
>UniRef100_P03600 RNA-directed RNA polymerase n=1 Tax=Cowpea mosaic virus
RepID=POL1_CPMV
Length = 1866
Score = 67.4 bits (163), Expect = 8e-10
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV +F+G+ ++ +LA+ V ITDG DK + + + E DFLKR F+
Sbjct: 1543 YGDDNLISVNAVVTPYFDGKKLKQSLAQGGVTITDGKDKTSLELPFRRLEECDFLKRTFV 1602
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
+ + + AP D +++S L+++ + +K Y + NV L EL
Sbjct: 1603 QRSSTIWDAPEDKASLWSQLHYV-----NCNNCEKEVAY----------LTNVVNVLREL 1647
Query: 364 YLHNDPKEFQRVRSFFVTRLPLLVD-QFRTWAFCESF--HSSQQTGMLRHDPASVL 522
Y+H+ P+E R + ++ + T A + F + QQ G +D +L
Sbjct: 1648 YMHS-PREATEFRRKVLKKVSWITSGDLPTLAQLQEFYEYQRQQGGADNNDTCDLL 1702
[51][TOP]
>UniRef100_Q9E933 210kDa protein n=1 Tax=Broad bean wilt virus 2 RepID=Q9E933_9SECO
Length = 1870
Score = 66.6 bits (161), Expect = 1e-09
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 1/165 (0%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1556 YGDDNLISVSDAISSKFDGSFLVSFIEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSFK 1615
Query: 184 KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMEL 363
G ++P+ +++ L+++ K +++ E + N N L EL
Sbjct: 1616 MSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILREL 1660
Query: 364 YLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
+LH D KE + R+ + L + +Q FHS Q G+
Sbjct: 1661 WLH-DVKEAKEFRNKVLRNLRWVGHEQLLNMQQLAVFHSEQMNGV 1704
[52][TOP]
>UniRef100_Q3MKX9 Polyprotein 1 n=1 Tax=Broad bean wilt virus 1 RepID=Q3MKX9_BBWV1
Length = 1842
Score = 66.2 bits (160), Expect = 2e-09
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S FNG + +A +K+TDG DK IE + DFLKR+F
Sbjct: 1527 VYGDDNLISVSEAISSRFNGNFLVNFMANLGIKVTDGVDKTKIGIEFRTIENCDFLKRRF 1586
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
+ G + ++ L+++ K V++ E + N N L E
Sbjct: 1587 KENTDGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRE 1631
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQ-FRTWAFCESFHSSQQTG 492
L+L DP + R +++L + Q T + FHS Q G
Sbjct: 1632 LWL-EDPGKAATFRREVISKLKWVEPQRLLTVSQVALFHSEQMNG 1675
[53][TOP]
>UniRef100_UPI000180D482 RNA-dependent RNA polymerase n=1 Tax=Mikania micrantha mosaic virus
RepID=UPI000180D482
Length = 474
Score = 65.9 bits (159), Expect = 2e-09
Identities = 44/141 (31%), Positives = 67/141 (47%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S FNGE + + +TDG DK I + + DFLKR F
Sbjct: 348 VYGDDNLISVSDAISSKFNGEFLVDFFLRLSITVTDGVDKTKQGISFRKLTDCDFLKRNF 407
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
L G P+ +++ L+++ K +++ + V N+N L E
Sbjct: 408 KVLPDGEWVGPMSRESLWPQLHFVRAKK---------------LEMADAYVANLNNILRE 452
Query: 361 LYLHNDPKEFQRVRSFFVTRL 423
L+LH +E +R V L
Sbjct: 453 LWLHGS-EEVTELRRMAVKTL 472
[54][TOP]
>UniRef100_UPI0000163DDB RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 2
RepID=UPI0000163DDB
Length = 697
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 382 VYGDDNLISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 441
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + P+ +++ L+++ K +++ E + N N L E
Sbjct: 442 KMNPDGTWRCPMSKESLWPQLHYVKAKK---------------LEMAEAYINNCNNILRE 486
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTG 492
L+LH D E + R+ + L + +Q FHS Q G
Sbjct: 487 LWLH-DVAEAKEFRNRVLRNLKWIGHEQLLNMQQLAVFHSEQMNG 530
[55][TOP]
>UniRef100_Q997D0 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q997D0_9SECO
Length = 1869
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1554 VYGDDNLISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 1613
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G + P+ +++ L+++ K +++ E + N N L E
Sbjct: 1614 KMNPDGTWRCPMSKESLWPQLHYVKAKK---------------LEMAEAYINNCNNILRE 1658
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTG 492
L+LH D E + R+ + L + +Q FHS Q G
Sbjct: 1659 LWLH-DVAEAKEFRNRVLRNLKWIGHEQLLNMQQLAVFHSEQMNG 1702
[56][TOP]
>UniRef100_Q06RG7 Polymerase (Fragment) n=1 Tax=Turnip ringspot virus
RepID=Q06RG7_9SECO
Length = 396
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F
Sbjct: 190 YGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFR 249
Query: 184 KLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVA 351
K G+ AP + ++++ L+++ + + H K + V+V+ EL + N A
Sbjct: 250 KDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYMWDVNECSA 305
Query: 352 LMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 462
L + K QRV + LP + +A C
Sbjct: 306 LRK-------KALQRVEWLVPSDLPTVAQIEEWYATC 335
[57][TOP]
>UniRef100_C9WI17 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C9WI17_9SECO
Length = 1857
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F
Sbjct: 1534 YGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFR 1593
Query: 184 KLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVA 351
K G+ AP + ++++ L+++ + + H K + V+V+ EL + N A
Sbjct: 1594 KDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYMWDVNECSA 1649
Query: 352 LMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 462
L + K QRV + LP + +A C
Sbjct: 1650 LRK-------KALQRVEWLVPSDLPTVAQIEEWYATC 1679
[58][TOP]
>UniRef100_C7SW00 Polyprotein n=1 Tax=Turnip ringspot virus RepID=C7SW00_9SECO
Length = 1860
Score = 65.9 bits (159), Expect = 2e-09
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F
Sbjct: 1537 YGDDNLLSVSEVVKPYFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFR 1596
Query: 184 KLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL---NVNVA 351
K G+ AP + ++++ L+++ + + H K + V+V+ EL + N A
Sbjct: 1597 KDKNGIFWNAPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYMWDVNECSA 1652
Query: 352 LMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 462
L + K QRV + LP + +A C
Sbjct: 1653 LRK-------KALQRVEWLVPSDLPTVAQIEEWYATC 1682
[59][TOP]
>UniRef100_Q998P7 Polyprotein n=1 Tax=Broad bean wilt virus 2 RepID=Q998P7_9SECO
Length = 1869
Score = 65.1 bits (157), Expect = 4e-09
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 1/166 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 1554 VYGDDNLISVSDAISSKFDGNFLVKFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 1613
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 1614 KLNPDGTWRSPMSKESLWPQLHYVKAKK---------------LEMAEAYINNCNNILRE 1658
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLL-VDQFRTWAFCESFHSSQQTGM 495
L+LH D E + R+ + L + +Q FHS Q G+
Sbjct: 1659 LWLH-DVIEAKEFRNRVLRSLKWIGHEQLLNMQQLAVFHSEQMNGI 1703
[60][TOP]
>UniRef100_Q4W8R6 Polyprotein n=1 Tax=Gentian mosaic virus RepID=Q4W8R6_9SECO
Length = 1853
Score = 65.1 bits (157), Expect = 4e-09
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 2/134 (1%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + ++ FNGE + + + +TDG DK I + + DFLKR F
Sbjct: 1533 VYGDDNLISVSDAISAKFNGEFLVDFFLKLSITVTDGVDKTKKGISFRRLADCDFLKRGF 1592
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
L G P+ +++ L+++ K +++ + V N+N L E
Sbjct: 1593 KNLPDGEWIGPMSRESLWPQLHFVRAKK---------------LEMADAYVANLNNILRE 1637
Query: 361 LYLH--NDPKEFQR 396
L+LH N+ E +R
Sbjct: 1638 LWLHSANEATELRR 1651
[61][TOP]
>UniRef100_UPI0000231CC7 RNA-dependent RNA polymerase n=1 Tax=Broad bean wilt virus 1
RepID=UPI0000231CC7
Length = 699
Score = 64.3 bits (155), Expect = 6e-09
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S FNG + + +K+TDG DK IE + + DFLKRKF
Sbjct: 384 VYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKF 443
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
+ G + ++ L+++ K V++ E + N N L E
Sbjct: 444 KENADGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRE 488
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQ-FRTWAFCESFHSSQQTG 492
L+L P++ R +++L + Q T + FH+ Q G
Sbjct: 489 LWL-GSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNG 532
[62][TOP]
>UniRef100_Q76L40 Polyprotein n=1 Tax=Broad bean wilt virus 1 RepID=Q76L40_BBWV1
Length = 1842
Score = 64.3 bits (155), Expect = 6e-09
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S FNG + + +K+TDG DK IE + + DFLKRKF
Sbjct: 1527 VYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTKVGIEFRTIEDCDFLKRKF 1586
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
+ G + ++ L+++ K V++ E + N N L E
Sbjct: 1587 KENADGTWSGVMAEEHLWPQLHFVKAKK---------------VEMSEAYISNCNNILRE 1631
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLVDQ-FRTWAFCESFHSSQQTG 492
L+L P++ R +++L + Q T + FH+ Q G
Sbjct: 1632 LWL-GSPEKAAAFRREVISKLKWVEPQRLLTISQVALFHNEQMNG 1675
[63][TOP]
>UniRef100_D0E0G9 Polyprotein n=1 Tax=Turnip ringspot virus RepID=D0E0G9_9SECO
Length = 1860
Score = 64.3 bits (155), Expect = 6e-09
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F
Sbjct: 1537 YGDDNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFK 1596
Query: 184 KLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELV---LNVNVA 351
K +G +P + ++++ L+++ + + H K + V+V+ EL +N A
Sbjct: 1597 KDRSGFFWNSPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYMWDINECAA 1652
Query: 352 LMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 462
L + K QRV + LP + + +A C
Sbjct: 1653 LRK-------KALQRVSWLLPSDLPTVAQIEKWYASC 1682
[64][TOP]
>UniRef100_B2KL92 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Turnip ringspot
virus RepID=B2KL92_9SECO
Length = 712
Score = 64.3 bits (155), Expect = 6e-09
Identities = 48/157 (30%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Frame = +1
Query: 4 YGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFL 183
YGDDNL+SV+ +F+G+ ++ LA+ KV ITDG DK +P + + + DFLKR F
Sbjct: 389 YGDDNLLSVSEVVKPFFDGKRLKEFLAKHKVVITDGKDKTSPYLLFRRLEDCDFLKRGFK 448
Query: 184 KLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELV---LNVNVA 351
K +G +P + ++++ L+++ + + H K + V+V+ EL +N A
Sbjct: 449 KDRSGFFWNSPEEKESLWAQLHYINVTNLEQHEAYKTNL----VNVLRELYMWDINECAA 504
Query: 352 LMELYLHNDPKEFQRVRSFFVTRLPLLVDQFRTWAFC 462
L + K QRV + LP + + +A C
Sbjct: 505 LRK-------KALQRVSWLLPSDLPTVAQIEKWYASC 534
[65][TOP]
>UniRef100_O12662 RNA polymerase n=1 Tax=Broad bean wilt virus 2 RepID=O12662_9SECO
Length = 280
Score = 63.5 bits (153), Expect = 1e-08
Identities = 42/129 (32%), Positives = 65/129 (50%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNLISV+ + +S F+G + + +K+TDG DK IE + DFLKR F
Sbjct: 160 VYGDDNLISVSDAISSKFDGSFLVSFMEGLGIKVTDGIDKTKIGIEFRRLENCDFLKRSF 219
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
G ++P+ +++ L+++ K +++ E + N N L E
Sbjct: 220 KMSPDGTWRSPMSKESLWPQLHFVKAKK---------------LEMAEAYINNCNNILRE 264
Query: 361 LYLHNDPKE 387
L+LH D KE
Sbjct: 265 LWLH-DVKE 272
[66][TOP]
>UniRef100_Q2TCK2 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Radish mosaic virus
RepID=Q2TCK2_9SECO
Length = 709
Score = 61.6 bits (148), Expect = 4e-08
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+SV+ +F+G+ ++ LA ++ ITDG DK +P ++ + + DFLKR F
Sbjct: 390 VYGDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGF 449
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LYW P + + Q + ++ E N+ L E
Sbjct: 450 KN----------------RGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRE 493
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLV-DQFRTWAFCESFHSSQQ 486
L++ D KE +R + R+ LV +T A E++++ +
Sbjct: 494 LFMW-DKKECAELRRKALQRISWLVPSDLQTVAQIEAWYAGNR 535
[67][TOP]
>UniRef100_C0IQ96 Polyprotein n=1 Tax=Radish mosaic virus RepID=C0IQ96_9SECO
Length = 1853
Score = 61.6 bits (148), Expect = 4e-08
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+SV+ +F+G+ ++ LA ++ ITDG DK +P ++ + + DFLKR F
Sbjct: 1534 VYGDDNLLSVSEVIKPYFDGKRLKEFLATLRITITDGKDKTSPFLQFRCLEDCDFLKRGF 1593
Query: 181 LKLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALME 360
LYW P + + Q + ++ E N+ L E
Sbjct: 1594 KN----------------RGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNLVTVLRE 1637
Query: 361 LYLHNDPKEFQRVRSFFVTRLPLLV-DQFRTWAFCESFHSSQQ 486
L++ D KE +R + R+ LV +T A E++++ +
Sbjct: 1638 LFMW-DKKECAELRRKALQRISWLVPSDLQTVAQIEAWYAGNR 1679
[68][TOP]
>UniRef100_B6CWG9 Polyprotein n=1 Tax=Tomato torrado virus RepID=B6CWG9_9SECO
Length = 2158
Score = 60.1 bits (144), Expect = 1e-07
Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESK--PFWELDFLKR 174
VYGDDNL++V P W+ AI L V I +G DK+ SK EL FL R
Sbjct: 1494 VYGDDNLVAV-PMELQWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSR 1552
Query: 175 KFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEE 327
F + G +QAPL +I +YW+ PS + T + + + G V E+
Sbjct: 1553 GFKRHRLGYVQAPLKWVSIIEPMYWIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEK 1611
Query: 328 LVLNVNVALME 360
LV +V AL E
Sbjct: 1612 LVTDVQNALKE 1622
[69][TOP]
>UniRef100_A1XIP9 Polyprotein n=1 Tax=Tomato torrado virus RepID=A1XIP9_9SECO
Length = 2158
Score = 59.7 bits (143), Expect = 2e-07
Identities = 46/131 (35%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESK--PFWELDFLKR 174
VYGDDNL++V P W+ AI L V I +G DK+ SK EL FL R
Sbjct: 1494 VYGDDNLVAV-PMELHWYTLPAIAQELEMVNVIIKNGIDKNMDVSSSKMLDLSELTFLSR 1552
Query: 175 KFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEE 327
F + G +QAPL +I +YW+ PS + T + + + G V E+
Sbjct: 1553 GFKRHRLGYVQAPLKWVSIIEPMYWIRPSVGCPDALAMLENIDTGVREAFHHGP-QVFEK 1611
Query: 328 LVLNVNVALME 360
LV +V AL E
Sbjct: 1612 LVTDVQNALKE 1622
[70][TOP]
>UniRef100_B4ZF31 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato black ring
virus RepID=B4ZF31_9SECO
Length = 73
Score = 59.3 bits (142), Expect = 2e-07
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKK 93
VYGDDNLISV+PS ASWF GEAIR+TLAEKK
Sbjct: 42 VYGDDNLISVSPSIASWFTGEAIRITLAEKK 72
[71][TOP]
>UniRef100_A7M6L1 Polyprotein n=1 Tax=Radish mosaic virus RepID=A7M6L1_9SECO
Length = 1853
Score = 59.3 bits (142), Expect = 2e-07
Identities = 37/113 (32%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+SV+ +F+G+ ++ LA + ITDG DK +P ++ + + DFLKR F
Sbjct: 1534 VYGDDNLLSVSEVIKPYFDGKRLKDFLATLHITITDGKDKTSPFLQFRRLEDCDFLKRGF 1593
Query: 181 LKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 336
+ G+ AP D ++++ L+++ + + H K + V V+ EL +
Sbjct: 1594 --KNRGLYWDAPEDKESLWAQLHYVNANNLEKHEAYKTNL----VTVLRELFM 1640
[72][TOP]
>UniRef100_Q3YC01 Polyprotein (Fragment) n=1 Tax=Stocky prune virus
RepID=Q3YC01_9SECO
Length = 795
Score = 58.5 bits (140), Expect = 4e-07
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDG---SDKDAPTIESKPFWELDFLK 171
VYGDDNL+SV+ +S +N +I L E+ V + +G ++D P P DFLK
Sbjct: 491 VYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPS-TCDFLK 549
Query: 172 RKFLKLDTGVIQAPLDMTAIFSSLYWLTPSKD 267
R+F+ +G + APLD +++ +W+ S+D
Sbjct: 550 RRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQD 581
[73][TOP]
>UniRef100_Q769F2 RNA dependent RNA polymerase (Fragment) n=1 Tax=Satsuma dwarf virus
RepID=Q769F2_SDV
Length = 374
Score = 56.6 bits (135), Expect = 1e-06
Identities = 58/191 (30%), Positives = 83/191 (43%), Gaps = 11/191 (5%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDN +SVA AS +N + I L+ VK+ DG+ K P E+DFLKRKF
Sbjct: 86 VYGDDNFVSVATPVASLYNLKTISEFLSRVGVKLGDGA-KSGTIKPFIPLEEVDFLKRKF 144
Query: 181 L-KLDTGVIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALM 357
+ + I PL+ +I L+++ G D I L LN+ AL
Sbjct: 145 VADSKSTAILCPLNKRSIEERLFYV----------------RGGQDEIAALELNIATALC 188
Query: 358 ELYLHND------PKEFQR--VRSFFVTRLPL-LVDQFRTWAFCESFHSSQQTGMLRHDP 510
E + H +E + ++S PL +D R W + SQ+T P
Sbjct: 189 EAFFHGQEYFSFLEREINKAVLKSKITLTKPLPTMDSIRVW------YLSQRTNTKVRSP 242
Query: 511 A-SVLDHMSGV 540
+ L MSG+
Sbjct: 243 SYEGLGTMSGI 253
[74][TOP]
>UniRef100_B6ZKN4 RNA1-polyprotein n=1 Tax=Radish mosaic virus RepID=B6ZKN4_9SECO
Length = 1853
Score = 56.6 bits (135), Expect = 1e-06
Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
VYGDDNL+SV +F+G+ ++ LA + ITDG DK +P ++ + + DFLKR F
Sbjct: 1534 VYGDDNLLSVNEVIKPYFDGKRLKEFLATLHITITDGKDKTSPFLQFRCLEDCDFLKRGF 1593
Query: 181 LKLDTGVI-QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVL 336
+ G+ AP + ++++ L+++ + + H K + V V+ EL +
Sbjct: 1594 --KNRGLYWDAPEEKESLWAQLHYVNANNLEKHEAYKTNL----VTVLRELFM 1640
[75][TOP]
>UniRef100_A4UVR7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Citrus mosaic
sadwavirus RepID=A4UVR7_SDV
Length = 319
Score = 55.5 bits (132), Expect = 3e-06
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
+YGDDN +SVA + AS +N E I L+ VK+ DG+ K P E+DFLKR+F
Sbjct: 31 LYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA-KSGTIKPFIPLEEVDFLKRQF 89
Query: 181 LKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVAL 354
+ D+G I PL +I L+++ G D + L LNV AL
Sbjct: 90 I-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAALELNVATAL 132
Query: 355 MELYLH 372
E + H
Sbjct: 133 CEAFFH 138
[76][TOP]
>UniRef100_A4UVR5 RNA-dependent RNA polymerase (Fragment) n=2 Tax=Citrus mosaic
sadwavirus RepID=A4UVR5_SDV
Length = 319
Score = 55.1 bits (131), Expect = 4e-06
Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF 180
+YGDDN +SVA + AS +N E I L+ VK+ DG+ K P E+DFLKR+F
Sbjct: 31 LYGDDNFVSVATAVASVYNLETISNFLSRVGVKLGDGA-KSGTIKPFIPLEEVDFLKRQF 89
Query: 181 LKLDTG--VIQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVAL 354
+ D+G I PL +I L+++ G D + L LNV AL
Sbjct: 90 V-ADSGSTAILCPLKKISIEERLFYV----------------KGGQDELAALELNVATAL 132
Query: 355 MELYLH 372
E + H
Sbjct: 133 CEAFFH 138
[77][TOP]
>UniRef100_UPI0000164A53 RNA-dependent RNA polymerase n=1 Tax=Apple latent spherical virus
RepID=UPI0000164A53
Length = 709
Score = 54.7 bits (130), Expect = 5e-06
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KPFWELDFLKRK 177
VYGDDNLISV + FN I L E V + +G+DK+ + P ++DFLKR+
Sbjct: 396 VYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRR 455
Query: 178 FLKLDTGVIQAPLDMTAIFSSLYWL 252
F L G I APL+ I L+W+
Sbjct: 456 FTTLQ-GHIVAPLNTVNITERLHWV 479
[78][TOP]
>UniRef100_Q9JGP2 235K polyprotein n=1 Tax=Apple latent spherical virus
RepID=Q9JGP2_9SECO
Length = 2079
Score = 54.7 bits (130), Expect = 5e-06
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIES-KPFWELDFLKRK 177
VYGDDNLISV + FN I L E V + +G+DK+ + P ++DFLKR+
Sbjct: 1766 VYGDDNLISVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRR 1825
Query: 178 FLKLDTGVIQAPLDMTAIFSSLYWL 252
F L G I APL+ I L+W+
Sbjct: 1826 FTTLQ-GHIVAPLNTVNITERLHWV 1849
[79][TOP]
>UniRef100_C7EXM2 Polyprotein n=1 Tax=Tomato chocolate spot virus RepID=C7EXM2_9VIRU
Length = 2155
Score = 53.9 bits (128), Expect = 9e-06
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Frame = +1
Query: 1 VYGDDNLISVAPSCASWFNGEAIRVTLAEKKVKITDGSDK--DAPTIESKPFWELDFLKR 174
VYGDDNL++V P W++ I L V I +G DK D ++ + EL FL R
Sbjct: 1497 VYGDDNLVAV-PLHLQWYSLPNIAQELDMVNVVIKNGLDKSMDVNEVQFQDLSELTFLSR 1555
Query: 175 KFLKLDTGVIQAPLDMTAIFSSLYWLTPS---------KDKFHTHQKASQYSGEVDVIEE 327
F + G APL +I +YW+ P+ + T + + + G+V E+
Sbjct: 1556 GFKRHALGYHMAPLKWVSIIEPMYWIRPAPGCPDAQAMMENVETGIREAFHHGQV-AYEK 1614
Query: 328 LVLNVNVALME 360
LV +V AL E
Sbjct: 1615 LVADVQEALNE 1625