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[1][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 240 bits (612), Expect = 4e-62
Identities = 115/144 (79%), Positives = 125/144 (86%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G++Q
Sbjct: 393 VSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQ 452
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND E
Sbjct: 453 APLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAE 512
Query: 361 FQRVRSFFVTRLPLLVDQFRTWAF 432
FQRVR F+ RLPL+V Q RTWAF
Sbjct: 513 FQRVRGFYAQRLPLMVSQLRTWAF 536
[2][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 240 bits (612), Expect = 4e-62
Identities = 112/144 (77%), Positives = 125/144 (86%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G++Q
Sbjct: 393 VSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQ 452
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHNDP+E
Sbjct: 453 APLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPRE 512
Query: 361 FQRVRSFFVTRLPLLVDQFRTWAF 432
F RVR F++ LPL QFRTWAF
Sbjct: 513 FSRVRDFYIKALPLATGQFRTWAF 536
[3][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 240 bits (612), Expect = 4e-62
Identities = 115/144 (79%), Positives = 125/144 (86%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G++Q
Sbjct: 1835 VSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQ 1894
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD +AIFSSLYWLTP K KFH QK S + GEVDVIEEL+LNVNVALMELYLHND E
Sbjct: 1895 APLDRSAIFSSLYWLTPDKSKFHESQKPSDFQGEVDVIEELLLNVNVALMELYLHNDVAE 1954
Query: 361 FQRVRSFFVTRLPLLVDQFRTWAF 432
FQRVR F+ RLPL+V Q RTWAF
Sbjct: 1955 FQRVRGFYAQRLPLMVSQLRTWAF 1978
[4][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 240 bits (612), Expect = 4e-62
Identities = 112/144 (77%), Positives = 125/144 (86%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+PS ASWF GEAIR+TLAEKKVKITDGSDKDAPTIE+K FWELDFLKRKFLKLD G++Q
Sbjct: 1833 VSPSIASWFTGEAIRITLAEKKVKITDGSDKDAPTIEAKSFWELDFLKRKFLKLDNGIVQ 1892
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD +AIFSSLYWLTP K KFH Q+AS + G VDV+EEL+LNVNVALMELYLHNDP+E
Sbjct: 1893 APLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPRE 1952
Query: 361 FQRVRSFFVTRLPLLVDQFRTWAF 432
F RVR F++ LPL QFRTWAF
Sbjct: 1953 FSRVRDFYIKALPLATGQFRTWAF 1976
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 211 bits (538), Expect = 2e-53
Identities = 102/145 (70%), Positives = 122/145 (84%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF-LKLDTGVI 177
V+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE+KPF ELDFLKRKF + + G +
Sbjct: 391 VSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQV 450
Query: 178 QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPK 357
APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +
Sbjct: 451 WAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKE 510
Query: 358 EFQRVRSFFVTRLPLLVDQFRTWAF 432
EF RVRSF++ RLP+ VDQFRTWAF
Sbjct: 511 EFNRVRSFYIARLPMQVDQFRTWAF 535
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 211 bits (538), Expect = 2e-53
Identities = 102/145 (70%), Positives = 122/145 (84%), Gaps = 1/145 (0%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKF-LKLDTGVI 177
V+P+ ASWF GEAIRVTLAEK++KITDGSDKDAPTIE+KPF ELDFLKRKF + + G +
Sbjct: 1817 VSPAVASWFTGEAIRVTLAEKRIKITDGSDKDAPTIEAKPFSELDFLKRKFYVHPEHGQV 1876
Query: 178 QAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPK 357
APLD +AIFS L+WLTP K KF +KA Y GEVDV+EEL++NVNV+L+ELYLHND +
Sbjct: 1877 WAPLDKSAIFSCLHWLTPQKSKFALQEKACDYLGEVDVVEELIINVNVSLVELYLHNDKE 1936
Query: 358 EFQRVRSFFVTRLPLLVDQFRTWAF 432
EF RVRSF++ RLP+ VDQFRTWAF
Sbjct: 1937 EFNRVRSFYIARLPMQVDQFRTWAF 1961
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 147 bits (372), Expect = 3e-34
Identities = 77/138 (55%), Positives = 96/138 (69%)
Frame = +1
Query: 16 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDM 195
A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+
Sbjct: 406 AIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDL 465
Query: 196 TAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
TAIFS L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQRVR
Sbjct: 466 TAIFSCLHWVTPHPQKMPKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVR 524
Query: 376 SFFVTRLPLLVDQFRTWA 429
+F+ ++ +L + TWA
Sbjct: 525 NFYTKKMNILPAGYYTWA 542
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 147 bits (372), Expect = 3e-34
Identities = 77/138 (55%), Positives = 96/138 (69%)
Frame = +1
Query: 16 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDM 195
A +FNGE I+ TL +K V ITDGSDK AP I+ K ELDFLKR+FLKL+TGV+QAPLD+
Sbjct: 1896 AIYFNGETIKETLKKKNVTITDGSDKTAPDIKWKTLGELDFLKRRFLKLETGVVQAPLDL 1955
Query: 196 TAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
TAIFS L+W+TP K Q VD + EL LNV VAL ELYLH + +EFQRVR
Sbjct: 1956 TAIFSCLHWVTPHPQKMPKGGAQLQVE-NVDTLYELALNVQVALTELYLHGNKEEFQRVR 2014
Query: 376 SFFVTRLPLLVDQFRTWA 429
+F+ ++ +L + TWA
Sbjct: 2015 NFYTKKMNILPAGYYTWA 2032
[9][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 111 bits (277), Expect = 3e-23
Identities = 59/132 (44%), Positives = 81/132 (61%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V P +FNG+ I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 668 VKPDTMKYFNGDRIKEVLAKFKVTITDGSDKNSPVLRAKPLKQLDFLKRGFKVQSDGRVL 727
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AIFSSLY++ P + + + L LN VAL ELYLHND ++
Sbjct: 728 APLDLQAIFSSLYYINP----------------QGNTLNSLFLNAQVALRELYLHNDIEQ 771
Query: 361 FQRVRSFFVTRL 396
F VR+F+VT++
Sbjct: 772 FTAVRNFYVTQI 783
[10][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 108 bits (271), Expect = 1e-22
Identities = 56/132 (42%), Positives = 81/132 (61%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
+ P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 394 IKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL 453
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AI+SSLY++ P + ++++ L LN VAL ELYLH D ++
Sbjct: 454 APLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQ 497
Query: 361 FQRVRSFFVTRL 396
F VR+F+V ++
Sbjct: 498 FTAVRNFYVNQI 509
[11][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 108 bits (271), Expect = 1e-22
Identities = 56/132 (42%), Positives = 81/132 (61%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
+ P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 668 IKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL 727
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AI+SSLY++ P + ++++ L LN VAL ELYLH D ++
Sbjct: 728 APLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQ 771
Query: 361 FQRVRSFFVTRL 396
F VR+F+V ++
Sbjct: 772 FTAVRNFYVNQI 783
[12][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 108 bits (271), Expect = 1e-22
Identities = 56/132 (42%), Positives = 81/132 (61%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
+ P +FNGE I+ LA+ KV ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 1880 IKPDTMKYFNGEQIKTILAKYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL 1939
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AI+SSLY++ P + ++++ L LN VAL ELYLH D ++
Sbjct: 1940 APLDLQAIYSSLYYINP----------------QGNILKSLFLNAQVALRELYLHGDVEQ 1983
Query: 361 FQRVRSFFVTRL 396
F VR+F+V ++
Sbjct: 1984 FTAVRNFYVNQI 1995
[13][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 108 bits (269), Expect = 2e-22
Identities = 55/132 (41%), Positives = 81/132 (61%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
+ P +FNGE I+ TLA+ ++ ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 394 IKPDTMKYFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL 453
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AI+SSLY++ P + +++ L LN VAL ELYLH D ++
Sbjct: 454 APLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQ 497
Query: 361 FQRVRSFFVTRL 396
F VR+F+V ++
Sbjct: 498 FTAVRNFYVKQI 509
[14][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 107 bits (268), Expect = 3e-22
Identities = 56/132 (42%), Positives = 79/132 (59%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
+ P +FNGE I+ LA KV ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 668 IKPDTMKYFNGEQIKTILARYKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL 727
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AI+SSLY++ P + +++ L LN VAL ELYLH D ++
Sbjct: 728 APLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQ 771
Query: 361 FQRVRSFFVTRL 396
F VR+F+V ++
Sbjct: 772 FTAVRNFYVKQI 783
[15][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 107 bits (268), Expect = 3e-22
Identities = 56/132 (42%), Positives = 79/132 (59%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
+ P +FNGE I+ LA KV ITDGSDK++P + +KP +LDFLKR F G +
Sbjct: 668 IKPDTMKYFNGEQIKTILANIKVTITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVL 727
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ AI+SSLY++ P + +++ L LN VAL ELYLH D ++
Sbjct: 728 APLDLQAIYSSLYYINP----------------QGNILNSLFLNAQVALRELYLHGDVEQ 771
Query: 361 FQRVRSFFVTRL 396
F VR+F+V ++
Sbjct: 772 FTAVRNFYVNQI 783
[16][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 105 bits (261), Expect = 2e-21
Identities = 60/142 (42%), Positives = 80/142 (56%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V PS FNG+ I+ T+A+ +V ITDGSDK +PT+ KP LDFLKR F D G +
Sbjct: 1589 VDPSILEVFNGDVIKKTMAKWRVTITDGSDKLSPTLTEKPLLSLDFLKRGFKLADNGQVY 1648
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD TAI+SSL+W+ DV+ L N AL+E++ H D E
Sbjct: 1649 APLDKTAIYSSLHWVAGRGQ---------------DVMSALKDNARSALIEMWAHQDKAE 1693
Query: 361 FQRVRSFFVTRLPLLVDQFRTW 426
F +RSF+V+++P D TW
Sbjct: 1694 FVELRSFYVSKIPSWSD-LPTW 1714
[17][TOP]
>UniRef100_Q88893 RNA-directed RNA polymerase n=1 Tax=Tobacco ringspot virus strain Bud
Blight RepID=POL1_TRSVB
Length = 2304
Score = 104 bits (260), Expect = 3e-21
Identities = 60/134 (44%), Positives = 77/134 (57%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V PS F GE I+ TLA KK+ ITDGSDK +P +E+KP +LDFLKR FL D+G +
Sbjct: 1892 VDPSMQKIFTGEVIKKTLARKKITITDGSDKLSPVLEAKPLAQLDFLKRSFLVSDSGQVM 1951
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
LD T I+SSL +L S + D I L NV AL ELY D +E
Sbjct: 1952 PALDRTCIYSSLLYLR---------------SADCDPIPLLHQNVQNALQELYYRQDREE 1996
Query: 361 FQRVRSFFVTRLPL 402
F +R+F++ RLP+
Sbjct: 1997 FDNLRTFYLERLPM 2010
[18][TOP]
>UniRef100_P29149 RNA-directed RNA polymerase n=1 Tax=Grapevine fanleaf virus
RepID=POL1_GFLV
Length = 2284
Score = 97.4 bits (241), Expect = 4e-19
Identities = 53/133 (39%), Positives = 80/133 (60%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
VA S +F G+A+++ +A+ V ITDG DK TI ++P EL+FLKR F++ G+I
Sbjct: 1844 VAQSVMQYFTGDALKMQMAKLGVTITDGKDKSLSTIPARPLLELEFLKRGFVRSSGGMIN 1903
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APL+ +I SSL ++ S D++++L+ NVN AL+ELYLH D
Sbjct: 1904 APLEKLSIMSSLVYIR---------------SDGSDMLQKLLDNVNTALVELYLHGDRTY 1948
Query: 361 FQRVRSFFVTRLP 399
F+ VR+F+ +LP
Sbjct: 1949 FESVRAFYFEKLP 1961
[19][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 93.2 bits (230), Expect = 8e-18
Identities = 54/128 (42%), Positives = 70/128 (54%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F KL+ G +
Sbjct: 385 VHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVY 444
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ ++++SL +T H L NV+ AL+ELYLH +
Sbjct: 445 APLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETW 489
Query: 361 FQRVRSFF 384
F +R F+
Sbjct: 490 FNHLRDFY 497
[20][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 93.2 bits (230), Expect = 8e-18
Identities = 54/128 (42%), Positives = 70/128 (54%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V P FNGE IR LA+ V ITDGSDK A IE KP +LDFLKR+F KL+ G +
Sbjct: 1772 VHPDYLPHFNGEIIRTRLADVNVIITDGSDKTAEKIEEKPLVQLDFLKRRFRKLNDGTVY 1831
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APLD+ ++++SL +T H L NV+ AL+ELYLH +
Sbjct: 1832 APLDLASVYTSLQNVTMGAGSIHI---------------ALQNNVHNALLELYLHGNETW 1876
Query: 361 FQRVRSFF 384
F +R F+
Sbjct: 1877 FNHLRDFY 1884
[21][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 92.4 bits (228), Expect = 1e-17
Identities = 53/133 (39%), Positives = 78/133 (58%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+ S + F G+A++ +A V ITDG DK TI ++P EL+FLKR F K + G+I
Sbjct: 384 VSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIY 443
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APL+ +I SSL ++ S D++++LV NVN AL+ELYLH D +
Sbjct: 444 APLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVELYLHQDREY 488
Query: 361 FQRVRSFFVTRLP 399
+ VR F++ +LP
Sbjct: 489 SESVRDFYLEKLP 501
[22][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 92.4 bits (228), Expect = 1e-17
Identities = 53/133 (39%), Positives = 78/133 (58%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+ S + F G+A++ +A V ITDG DK TI ++P EL+FLKR F K + G+I
Sbjct: 1843 VSQSIMTSFTGDALKAEMANLGVTITDGKDKSLATIPARPLLELEFLKRGFKKGNGGLIY 1902
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APL+ +I SSL ++ S D++++LV NVN AL+ELYLH D +
Sbjct: 1903 APLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVELYLHQDREY 1947
Query: 361 FQRVRSFFVTRLP 399
+ VR F++ +LP
Sbjct: 1948 SESVRDFYLEKLP 1960
[23][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 91.3 bits (225), Expect = 3e-17
Identities = 52/133 (39%), Positives = 77/133 (57%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+ S F G+A++ +A V ITDG DK TI ++P EL+FLKR K + G+I
Sbjct: 1845 VSQSIMESFTGDALKAEMANVGVTITDGKDKSLATIPARPLLELEFLKRGIKKGNGGMIY 1904
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
APL+ +I SSL ++ S D++++LV NVN AL+EL+LH D +
Sbjct: 1905 APLEKLSIMSSLVYIR---------------SDGSDMLQKLVDNVNTALVELFLHQDKEY 1949
Query: 361 FQRVRSFFVTRLP 399
F VR+F++ +LP
Sbjct: 1950 FDSVRNFYLEKLP 1962
[24][TOP]
>UniRef100_O37086 RNA1 polyprotein n=1 Tax=Peach rosette mosaic virus
RepID=O37086_9SECO
Length = 2150
Score = 72.0 bits (175), Expect = 2e-11
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G I+ +A + ITDG+DK + T+E KP L+FLKR F + G++ APLD T+
Sbjct: 1830 FFDGPVIKREMASVGITITDGTDKSSLTLERKPLASLEFLKRGFRVQENGLVVAPLDKTS 1889
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLH-NDPKEFQRVRS 378
+++ L++L + F + NV L E+ LH N +EF RVR+
Sbjct: 1890 MYTRLFYLPLALMAFIPGYFSKG-------------NVKSFLEEIVLHPNHRREFYRVRN 1936
Query: 379 FFVTRLP 399
F+V++ P
Sbjct: 1937 FYVSKAP 1943
[25][TOP]
>UniRef100_Q02941 RNA-directed RNA polymerase (Fragment) n=1 Tax=Andean potato mottle
virus RepID=POL1_APMV
Length = 729
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/135 (31%), Positives = 70/135 (51%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQ 180
V+P FNG+ ++ +A V ITDG DK PT+E +P + DFLKR F++ V
Sbjct: 421 VSPVIHDKFNGKLLKECMARFGVTITDGKDKTLPTLEFRPLEDCDFLKRGFIQRSELVWD 480
Query: 181 APLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKE 360
AP + +++++ L++++ Y+G + VNV + ELY+H+ PKE
Sbjct: 481 APEERSSLYTQLHYVSTKMQSLE-----DAYTGNL---------VNV-IRELYMHS-PKE 524
Query: 361 FQRVRSFFVTRLPLL 405
+R + LP L
Sbjct: 525 ASDLRRKALRDLPWL 539
[26][TOP]
>UniRef100_Q24M90 Polyprotein 1 n=1 Tax=Raspberry ringspot virus RepID=Q24M90_9SECO
Length = 2366
Score = 62.0 bits (149), Expect = 2e-08
Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKK-VKITDGSDKDAPTIESKPFWELDFLKRKFLK-LDTGV 174
+ P+ S FNG I+ + E+ +KITDG+DK +P I+++P + +FLKR + K G+
Sbjct: 1948 IHPNIESVFNGNTIKAYMKEELGIKITDGADKLSPVIDARPLEQCEFLKRTWRKDRQYGL 2007
Query: 175 IQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDP 354
+APL T+IFS L ++ + Y + +++ NV +L E LH P
Sbjct: 2008 YRAPLVETSIFSCLRYV-----------RLQNYDWQAPLLQ----NVQGSLYEASLHG-P 2051
Query: 355 KEFQRVRSFFVTRLPLLVDQFRTWAF 432
+ R+ F P V++ + +
Sbjct: 2052 EMHDRIYKHFAMHFPKWVEEHELYTY 2077
[27][TOP]
>UniRef100_B1A4F8 Polyprotein 1 n=1 Tax=Squash mosaic virus RepID=B1A4F8_9SECO
Length = 1858
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/120 (31%), Positives = 66/120 (55%)
Frame = +1
Query: 16 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDM 195
A+ FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ V +P +
Sbjct: 1549 ANVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLVYDSPEEK 1607
Query: 196 TAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
+++++ L+++ + +D E ++N+N L ELY+H+ P+E +R
Sbjct: 1608 SSLWAQLHYVNTT---------------SLDKQEAYLVNLNNVLKELYMHS-PEEMNMIR 1651
[28][TOP]
>UniRef100_Q6W8W4 RNA-directed RNA polymerase n=1 Tax=Raspberry ringspot virus strain
cherry RepID=POL1_RRVC
Length = 2367
Score = 61.2 bits (147), Expect = 3e-08
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKK-VKITDGSDKDAPTIESKPFWELDFLKRKFLK-LDTGV 174
+ P+ S FNG AI+ + E+ +KITDG+DK +P I ++P + +FLKR + K G+
Sbjct: 1949 IHPNIESAFNGNAIKAYMKEELGIKITDGADKLSPVICARPLEQCEFLKRTWRKDRQYGL 2008
Query: 175 IQAPLDMTAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDP 354
+APL T+I+S L ++ + Y + +++ NV +L E LH P
Sbjct: 2009 YRAPLVETSIYSCLRYV-----------RLQNYDWQAPLLQ----NVQGSLYEASLHG-P 2052
Query: 355 KEFQRVRSFFVTRLPLLVDQFRTWAF 432
R+ F T P V++ + +
Sbjct: 2053 DMHARIYKHFATHFPKWVEEHELYTY 2078
[29][TOP]
>UniRef100_UPI0000163D09 RNA-dependent RNA polymerase n=1 Tax=Squash mosaic virus
RepID=UPI0000163D09
Length = 711
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/120 (30%), Positives = 66/120 (55%)
Frame = +1
Query: 16 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDM 195
AS FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P +
Sbjct: 402 ASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEK 460
Query: 196 TAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
+++++ L+++ + +D E ++N+N L ELY+++ P+E +R
Sbjct: 461 SSLWAQLHYVNTT---------------NLDKQEAYLVNLNNVLKELYMYS-PEEMNMLR 504
[30][TOP]
>UniRef100_Q91PR6 Polyprotein n=1 Tax=Squash mosaic virus RepID=Q91PR6_9SECO
Length = 1858
Score = 59.3 bits (142), Expect = 1e-07
Identities = 37/120 (30%), Positives = 66/120 (55%)
Frame = +1
Query: 16 ASWFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDM 195
AS FNG ++ +A+ V ITDG DK +PT+E + DFLKR F KL+ + +P +
Sbjct: 1549 ASVFNGRTLKAEMAQFGVTITDGIDKTSPTLEFRKLSNCDFLKRGF-KLNGLIYDSPEEK 1607
Query: 196 TAIFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
+++++ L+++ + +D E ++N+N L ELY+++ P+E +R
Sbjct: 1608 SSLWAQLHYVNTT---------------NLDKQEAYLVNLNNVLKELYMYS-PEEMNMLR 1651
[31][TOP]
>UniRef100_UPI0000163CF4 putative RNA dependent RNA polymerase n=1 Tax=Bean pod mottle virus
RepID=UPI0000163CF4
Length = 710
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/118 (29%), Positives = 64/118 (54%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 403 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 462
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
++S L++++ +++ E ++N+ L ELYLH+ P+E +R+R
Sbjct: 463 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLR 504
[32][TOP]
>UniRef100_Q3L2Z2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z2_9SECO
Length = 1851
Score = 58.9 bits (141), Expect = 2e-07
Identities = 36/128 (28%), Positives = 69/128 (53%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSF 381
++S L++++ +++ E ++N+ L ELYLH+ P+E +++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRK 1647
Query: 382 FVTRLPLL 405
++R+ L
Sbjct: 1648 ALSRIEWL 1655
[33][TOP]
>UniRef100_Q9YJU5 RNA-directed RNA polymerase n=1 Tax=Bean-pod mottle virus (strain
Kentucky G7) RepID=POL1_BPMV
Length = 1850
Score = 58.9 bits (141), Expect = 2e-07
Identities = 35/118 (29%), Positives = 64/118 (54%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 1543 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 1602
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVR 375
++S L++++ +++ E ++N+ L ELYLH+ P+E +R+R
Sbjct: 1603 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARRLR 1644
[34][TOP]
>UniRef100_Q8JUF2 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF2_9SECO
Length = 1851
Score = 57.4 bits (137), Expect = 5e-07
Identities = 36/128 (28%), Positives = 68/128 (53%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ LA + ITDG DK + T++ + E DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLASHNITITDGIDKTSATLQFRKLSECDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSF 381
++S L++++ +++ E ++N+ L ELYLH+ P+E ++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEACQLRRR 1647
Query: 382 FVTRLPLL 405
++R+ L
Sbjct: 1648 ALSRIEWL 1655
[35][TOP]
>UniRef100_Q8JUF5 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q8JUF5_9SECO
Length = 1851
Score = 57.0 bits (136), Expect = 6e-07
Identities = 35/128 (27%), Positives = 69/128 (53%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ LA + ITDG DK + T++ + + DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSF 381
++S L++++ +++ E ++N+ L ELYLH+ P+E +++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRK 1647
Query: 382 FVTRLPLL 405
++R+ L
Sbjct: 1648 ALSRIEWL 1655
[36][TOP]
>UniRef100_Q3L2Z1 Polyprotein 1 n=1 Tax=Bean pod mottle virus RepID=Q3L2Z1_9SECO
Length = 1851
Score = 57.0 bits (136), Expect = 6e-07
Identities = 35/128 (27%), Positives = 69/128 (53%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ LA + ITDG DK + T++ + + DFLKR F ++ + AP D +
Sbjct: 1544 YFSGSKLKSFLAGHNITITDGIDKTSATLQFRKLADCDFLKRNFKQMSNVLWVAPEDKAS 1603
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSF 381
++S L++++ +++ E ++N+ L ELYLH+ P+E +++R
Sbjct: 1604 LWSQLHYVS---------------CNNLEMQEAYLVNLVNVLRELYLHS-PEEARQLRRK 1647
Query: 382 FVTRLPLL 405
++R+ L
Sbjct: 1648 ALSRIEWL 1655
[37][TOP]
>UniRef100_B9UKJ7 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Cocoa necrosis
virus RepID=B9UKJ7_9SECO
Length = 76
Score = 56.2 bits (134), Expect = 1e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +1
Query: 1 VAPSCASWFNGEAIRVTLAEKKVKITDGSDK 93
V+PS ASWF GEAIRV LAEKK+KITDGSDK
Sbjct: 46 VSPSIASWFTGEAIRVCLAEKKIKITDGSDK 76
[38][TOP]
>UniRef100_UPI0000163D04 RNA-dependent RNA polymerase n=1 Tax=Red clover mottle virus
RepID=UPI0000163D04
Length = 713
Score = 53.5 bits (127), Expect = 7e-06
Identities = 34/128 (26%), Positives = 61/128 (47%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ +A + ITDG DK + T+E + + DFLKR FLK + + AP + +
Sbjct: 404 YFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKAS 463
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSF 381
+++ L+++ + + + N+ L ELY+H DP E R
Sbjct: 464 LWAQLHYVNVNNCEMQV---------------AYMTNLVNVLRELYMH-DPTEMVEFRRL 507
Query: 382 FVTRLPLL 405
+ +P L
Sbjct: 508 ALKSIPWL 515
[39][TOP]
>UniRef100_P35930 RNA-directed RNA polymerase n=1 Tax=Red clover mottle virus
RepID=POL1_RCMV
Length = 1864
Score = 53.5 bits (127), Expect = 7e-06
Identities = 34/128 (26%), Positives = 61/128 (47%)
Frame = +1
Query: 22 WFNGEAIRVTLAEKKVKITDGSDKDAPTIESKPFWELDFLKRKFLKLDTGVIQAPLDMTA 201
+F+G ++ +A + ITDG DK + T+E + + DFLKR FLK + + AP + +
Sbjct: 1555 YFDGTKLKQAMARNGIIITDGKDKTSATLEFRRLEDCDFLKRGFLKRSSVLWDAPEEKAS 1614
Query: 202 IFSSLYWLTPSKDKFHTHQKASQYSGEVDVIEELVLNVNVALMELYLHNDPKEFQRVRSF 381
+++ L+++ + + + N+ L ELY+H DP E R
Sbjct: 1615 LWAQLHYVNVNNCEMQV---------------AYMTNLVNVLRELYMH-DPTEMVEFRRL 1658
Query: 382 FVTRLPLL 405
+ +P L
Sbjct: 1659 ALKSIPWL 1666