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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 278 bits (710), Expect = 3e-73
Identities = 135/191 (70%), Positives = 156/191 (81%)
Frame = +2
Query: 2 HYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIY 181
HYKP E DFIVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+
Sbjct: 591 HYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIH 650
Query: 182 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQ 361
P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQ
Sbjct: 651 PILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQ 710
Query: 362 YFDAPIPQANVGQFYFVDGETYAALNDFKEAKVLGYEKELPTLMLNRAAKDGNVPCMVAQ 541
YFDAP+P A +G FYF +GETYAAL ++KE KVL YE PTL+LN AAKD VPCMVA
Sbjct: 711 YFDAPLPTATIGTFYFANGETYAALCEYKEGKVLNYE-GFPTLILNEAAKDRKVPCMVAT 769
Query: 542 MKGKRYAVYLA 574
++ V LA
Sbjct: 770 QAKTKFKVSLA 780
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 278 bits (710), Expect = 3e-73
Identities = 135/191 (70%), Positives = 156/191 (81%)
Frame = +2
Query: 2 HYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIY 181
HYKP E DFIVSTEPLKMGV GEHVPI+YG G+G LPTK WVL+FG+ S LKN GYLI+
Sbjct: 2031 HYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRPSQLKNKLGYLIH 2090
Query: 182 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQ 361
P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYRN IPEST+GLEQ
Sbjct: 2091 PILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYRNVIPESTSGLEQ 2150
Query: 362 YFDAPIPQANVGQFYFVDGETYAALNDFKEAKVLGYEKELPTLMLNRAAKDGNVPCMVAQ 541
YFDAP+P A +G FYF +GETYAAL ++KE KVL YE PTL+LN AAKD VPCMVA
Sbjct: 2151 YFDAPLPTATIGTFYFANGETYAALCEYKEGKVLNYE-GFPTLILNEAAKDRKVPCMVAT 2209
Query: 542 MKGKRYAVYLA 574
++ V LA
Sbjct: 2210 QAKTKFKVSLA 2220
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 265 bits (677), Expect = 2e-69
Identities = 134/191 (70%), Positives = 155/191 (81%)
Frame = +2
Query: 2 HYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIY 181
HYKP E DFIVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI
Sbjct: 591 HYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLIT 650
Query: 182 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQ 361
LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQ
Sbjct: 651 GLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQ 710
Query: 362 YFDAPIPQANVGQFYFVDGETYAALNDFKEAKVLGYEKELPTLMLNRAAKDGNVPCMVAQ 541
YFDAPIPQA+VG FYF DGETY AL ++K+ KVL YE LPT +LN+AAKD VPCMVA+
Sbjct: 711 YFDAPIPQASVGTFYFGDGETYTALCEYKDGKVLQYE-GLPTAILNQAAKDRKVPCMVAR 769
Query: 542 MKGKRYAVYLA 574
++ V +A
Sbjct: 770 QWKSKFTVRMA 780
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 265 bits (677), Expect = 2e-69
Identities = 134/191 (70%), Positives = 155/191 (81%)
Frame = +2
Query: 2 HYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIY 181
HYKP E DFIVS +PLK GV GE+VPI +G GIG LPTK WV +FGK S LKN+KGYLI
Sbjct: 2033 HYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKPSQLKNSKGYLIT 2092
Query: 182 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQ 361
LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYRN IPEST+GLEQ
Sbjct: 2093 GLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYRNVIPESTSGLEQ 2152
Query: 362 YFDAPIPQANVGQFYFVDGETYAALNDFKEAKVLGYEKELPTLMLNRAAKDGNVPCMVAQ 541
YFDAPIPQA+VG FYF DGETY AL ++K+ KVL YE LPT +LN+AAKD VPCMVA+
Sbjct: 2153 YFDAPIPQASVGTFYFGDGETYTALCEYKDGKVLQYE-GLPTAILNQAAKDRKVPCMVAR 2211
Query: 542 MKGKRYAVYLA 574
++ V +A
Sbjct: 2212 QWKSKFTVRMA 2222
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 214 bits (546), Expect = 3e-54
Identities = 106/190 (55%), Positives = 131/190 (68%)
Frame = +2
Query: 2 HYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIY 181
HYKP E+DF+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y
Sbjct: 590 HYKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACY 648
Query: 182 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQ 361
LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL
Sbjct: 649 KLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTG 708
Query: 362 YFDAPIPQANVGQFYFVDGETYAALNDFKEAKVLGYEKELPTLMLNRAAKDGNVPCMVAQ 541
YFDAP+P A +G+ YF +GETYAAL +FK +VL +LN A + G VPC+ A
Sbjct: 709 YFDAPLPAATIGKSYFANGETYAALCEFKNGEVLDIVGPTNVQILNGAVRQGKVPCLAAH 768
Query: 542 MKGKRYAVYL 571
G ++ V L
Sbjct: 769 SVGTKFKVSL 778
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 214 bits (546), Expect = 3e-54
Identities = 106/190 (55%), Positives = 131/190 (68%)
Frame = +2
Query: 2 HYKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIY 181
HYKP E+DF+VST P+K G G H+PIK GGG+G LPT WV NFG+ S LKN GY Y
Sbjct: 2016 HYKPKEQDFLVSTLPIKQGE-GVHIPIKIGGGVGGLPTHQWVKNFGRPSQLKNNDGYACY 2074
Query: 182 PLLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQ 361
LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYRN IPES GL
Sbjct: 2075 KLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYRNSIPESVDGLTG 2134
Query: 362 YFDAPIPQANVGQFYFVDGETYAALNDFKEAKVLGYEKELPTLMLNRAAKDGNVPCMVAQ 541
YFDAP+P A +G+ YF +GETYAAL +FK +VL +LN A + G VPC+ A
Sbjct: 2135 YFDAPLPAATIGKSYFANGETYAALCEFKNGEVLDIVGPTNVQILNGAVRQGKVPCLAAH 2194
Query: 542 MKGKRYAVYL 571
G ++ V L
Sbjct: 2195 SVGTKFKVSL 2204
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 155 bits (393), Expect = 2e-36
Identities = 89/195 (45%), Positives = 117/195 (60%), Gaps = 6/195 (3%)
Frame = +2
Query: 5 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 184
YKP + +VST PLK G G VP++ G GIG LPT WV F + + L +A GY I+
Sbjct: 599 YKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWG 658
Query: 185 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 364
+R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQY
Sbjct: 659 NVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQY 718
Query: 365 FDAPIPQANV-GQFYFVDGETYAALNDFKEAKVLGYEKELPTL-----MLNRAAKDGNVP 526
FDA IPQA++ G FY + E+ + L + K V+G E L ++ + K G +P
Sbjct: 719 FDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTEKFNLNGARDLIMQGQKLGKLP 778
Query: 527 CMVAQMKGKRYAVYL 571
M A ++ V L
Sbjct: 779 VMAATQAPNKFYVGL 793
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 155 bits (393), Expect = 2e-36
Identities = 89/195 (45%), Positives = 117/195 (60%), Gaps = 6/195 (3%)
Frame = +2
Query: 5 YKPCEEDFIVSTEPLKMGVLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYP 184
YKP + +VST PLK G G VP++ G GIG LPT WV F + + L +A GY I+
Sbjct: 2089 YKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRPTQLVDAYGYKIWG 2148
Query: 185 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQY 364
+R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YRN IPEST GLEQY
Sbjct: 2149 NVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYRNVIPESTYGLEQY 2208
Query: 365 FDAPIPQANV-GQFYFVDGETYAALNDFKEAKVLGYEKELPTL-----MLNRAAKDGNVP 526
FDA IPQA++ G FY + E+ + L + K V+G E L ++ + K G +P
Sbjct: 2209 FDAAIPQASLPGTFYLANAESESLLQEHKTGTVIGLTTEKFNLNGARDLIMQGQKLGKLP 2268
Query: 527 CMVAQMKGKRYAVYL 571
M A ++ V L
Sbjct: 2269 VMAATQAPNKFYVGL 2283
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 77.4 bits (189), Expect = 7e-13
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 2/120 (1%)
Frame = +2
Query: 14 CEEDFIVSTEPLKMG--VLGEHVPIKYGGGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPL 187
C++ F+VST PL G H+P++ G G+GR+P+++WV F + +++ + +IY
Sbjct: 1778 CDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWVRRFRR---IRHVQIRVIY-- 1832
Query: 188 LREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYF 367
+ AGK IIF APY+A A I+F A + + RD L Y N +++G+EQYF
Sbjct: 1833 --DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRDMLNRYNNVCTPNSSGIEQYF 1889
[10][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 53.9 bits (128), Expect = 9e-06
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Frame = +2
Query: 17 EEDFIVSTEPLKMGVLGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPL 187
E F+VST PL+ G H I+Y G+GRLP+++WV F S+ A+
Sbjct: 574 EHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE------- 626
Query: 188 LREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYF 367
+R+ +GK I F PYVAN A I F Y++ I Y
Sbjct: 627 IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGLG--------YDYKSMI-------NLYH 671
Query: 368 DAPIPQANVGQFYF 409
D +P ++ FYF
Sbjct: 672 DVSVPGSDALYFYF 685
[11][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 53.9 bits (128), Expect = 9e-06
Identities = 42/134 (31%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Frame = +2
Query: 17 EEDFIVSTEPLKMGVLGE--HVPIKYG-GGIGRLPTKNWVLNFGKSSSLKNAKGYLIYPL 187
E F+VST PL+ G H I+Y G+GRLP+++WV F S+ A+
Sbjct: 1961 EHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTAE------- 2013
Query: 188 LREQLEAGKRIIFMSPAPYVANNAALIAFGSATKLLNQRDALVHYRNCIPESTTGLEQYF 367
+R+ +GK I F PYVAN A I F Y++ I Y
Sbjct: 2014 IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGLG--------YDYKSMI-------NLYH 2058
Query: 368 DAPIPQANVGQFYF 409
D +P ++ FYF
Sbjct: 2059 DVSVPGSDALYFYF 2072