[UP]
[1][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 278 bits (711), Expect = 2e-73
Identities = 137/145 (94%), Positives = 143/145 (98%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEP+IHINEDLMESL+LEEKKEW+DSSPTRVFDIDPVTQQV+VVD
Sbjct: 174 KDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDPVTQQVMVVD 233
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAYSYDDEVIKKAEAMGKPGL+EI AKQDSFIFTVESTGAVKASQLL N+IEILKQKLD
Sbjct: 234 PEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNSIEILKQKLD 293
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLSEDTVEADDQFGELGAHMRGG
Sbjct: 294 AVRLSEDTVEADDQFGELGAHMRGG 318
[2][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 263 bits (672), Expect = 7e-69
Identities = 128/145 (88%), Positives = 140/145 (96%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEP+IHINEDLMESLSLEEK+ W++SSPT+VFDIDP TQQV+VVD
Sbjct: 174 KDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVD 233
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAY+YD+EVIKKAE+MGKPGLV I AK+DSFIFTVESTGA+KASQL+ NAIEILKQKLD
Sbjct: 234 PEAYTYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLD 293
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLSEDTVEADDQFGELGAHMRGG
Sbjct: 294 AVRLSEDTVEADDQFGELGAHMRGG 318
[3][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 255 bits (651), Expect = 2e-66
Identities = 124/145 (85%), Positives = 137/145 (94%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEPEIHINEDLMESL+LEEK W++SSPT+VFDID +QQV+V D
Sbjct: 174 KDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVAD 233
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
EAY+YDDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLD
Sbjct: 234 AEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLD 293
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLSEDTVEADDQFGELGAHMRGG
Sbjct: 294 AVRLSEDTVEADDQFGELGAHMRGG 318
[4][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 255 bits (651), Expect = 2e-66
Identities = 124/145 (85%), Positives = 137/145 (94%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEPEIHINEDLMESL+LEEK W++SSPT+VFDID +QQV+V D
Sbjct: 174 KDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVVVAD 233
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
EAY+YDDEV+KKAEAMGKPGLVEI AK+DSFIFTVESTGA+KASQL+ NAI++LKQKLD
Sbjct: 234 AEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQKLD 293
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLSEDTVEADDQFGELGAHMRGG
Sbjct: 294 AVRLSEDTVEADDQFGELGAHMRGG 318
[5][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 253 bits (647), Expect = 5e-66
Identities = 125/143 (87%), Positives = 136/143 (95%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEPEIHINEDLME+L+LEEK WI+SSPT+VFDID VTQQV+VVD
Sbjct: 179 KDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFDIDKVTQQVVVVD 238
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAY+YDDEVIKKAEAMGK GL++I AK+DSFIFTVESTGAVKASQL+ NAIEILKQKLD
Sbjct: 239 PEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLVLNAIEILKQKLD 298
Query: 202 AVRLSEDTVEADDQFGELGAHMR 134
AVRLS+DTVEADDQFGELG HMR
Sbjct: 299 AVRLSDDTVEADDQFGELGVHMR 321
[6][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 251 bits (642), Expect = 2e-65
Identities = 122/145 (84%), Positives = 137/145 (94%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTF YEPEIHINE LME+L+LEEK+EWIDSSPT+VF++DPV+QQV+VVD
Sbjct: 178 KDHAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFELDPVSQQVVVVD 237
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAY+YD+EV+KKAEAMGKPGLVEI +K+DSFIFTVESTGA+KASQ+ NAIEILK KLD
Sbjct: 238 PEAYTYDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFLNAIEILKSKLD 297
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLS DT EADDQFGELGAHMRGG
Sbjct: 298 AVRLSFDTEEADDQFGELGAHMRGG 322
[7][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 242 bits (618), Expect = 1e-62
Identities = 119/145 (82%), Positives = 137/145 (94%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVD
Sbjct: 175 KDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVD 234
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAY+YD+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLD
Sbjct: 235 PEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLD 294
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 295 AVRLSDDTVEADDQFGELGAHMRGG 319
[8][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 242 bits (618), Expect = 1e-62
Identities = 119/145 (82%), Positives = 137/145 (94%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEP+I INED+M++LS EEK + I+SSPT+VF +DPVT+QV+VVD
Sbjct: 175 KDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVD 234
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAY+YD+EVIKKAEAMGKPGL+EI+ K DSFIFTVESTGAVKASQL+ NAI++LKQKLD
Sbjct: 235 PEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLD 294
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRLS+DTVEADDQFGELGAHMRGG
Sbjct: 295 AVRLSDDTVEADDQFGELGAHMRGG 319
[9][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 231 bits (590), Expect = 2e-59
Identities = 113/145 (77%), Positives = 134/145 (92%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV+VVD
Sbjct: 175 KDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVD 234
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PEAY+YD+EVIKKAEAMGKPGL+EI+ K DSF+FTVESTGA+KASQL+ NAI+ILKQKLD
Sbjct: 235 PEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLD 294
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
A+RLS++TVEADDQFGELGAHMR G
Sbjct: 295 AIRLSDNTVEADDQFGELGAHMREG 319
[10][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 214 bits (545), Expect = 4e-54
Identities = 105/145 (72%), Positives = 126/145 (86%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEPEI INE+LME+L+LEEK+ ++SSPT+VF+IDP TQQV+V D
Sbjct: 190 KDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLVESSPTKVFNIDPNTQQVVVED 249
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
EAY+YDDEVIKKA+AMGKPGL+EINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLD
Sbjct: 250 AEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLD 309
Query: 202 AVRLSEDTVEADDQFGELGAHMRGG 128
AVRL +D D GELGAH+ GG
Sbjct: 310 AVRLQDD----DADLGELGAHLVGG 330
[11][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 193 bits (491), Expect = 7e-48
Identities = 97/144 (67%), Positives = 120/144 (83%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEP+I INE+LME+L++EE++ I+SSPT+VF +D Q V+V +
Sbjct: 189 KDHAKWSPAATVTFMYEPDIRINEELMETLTVEERRRLIESSPTKVFKLDSANQ-VVVDN 247
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
EAY+YDDEVIK AEA+GKPGLVEINAK+DSFIFTVE+TGA+ A +L+ NAI +L+QKLD
Sbjct: 248 AEAYTYDDEVIKHAEALGKPGLVEINAKEDSFIFTVETTGAITAYELIMNAITVLRQKLD 307
Query: 202 AVRLSEDTVEADDQFGELGAHMRG 131
AVRL +D D GELGAH+ G
Sbjct: 308 AVRLQDD----DGDLGELGAHLGG 327
[12][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 190 bits (482), Expect = 7e-47
Identities = 95/144 (65%), Positives = 119/144 (82%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSPAATVTFMYEP+I INE+LME+L++EE+ I+SSPT+VF++D Q V+V +
Sbjct: 189 KDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLIESSPTKVFELDSANQ-VVVKN 247
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
EAY+YDDEVIK AEA+GKPGLVEI AK+DSF+FTVE+TGA+ A +L+ NAI +L+QKLD
Sbjct: 248 AEAYTYDDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTGAITAYELIMNAITVLRQKLD 307
Query: 202 AVRLSEDTVEADDQFGELGAHMRG 131
AVRL +D D GELGAH+ G
Sbjct: 308 AVRLQDD----DGDLGELGAHLGG 327
[13][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 140 bits (352), Expect = 9e-32
Identities = 66/135 (48%), Positives = 100/135 (74%), Gaps = 3/135 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
+DHAKW P AT T+ +EPEI INE+LM +L+ EEK +++SSPT +F D T++V+V
Sbjct: 192 RDHAKWQPVATATYRFEPEITINEELMATLTEEEKMAFVESSPTALFRYDEATRRVVVDA 251
Query: 382 PE---AYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
P+ +Y YD E +KKAE +GKPGLV+I AK+D+F FTVESTGA++ +++ NA+++L++
Sbjct: 252 PDQARSYGYDGECLKKAEELGKPGLVDIRAKEDAFHFTVESTGALRPEEIVVNALKVLER 311
Query: 211 KLDAVRLSEDTVEAD 167
K++ R D +E +
Sbjct: 312 KMEVTRGELDILERE 326
[14][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 139 bits (349), Expect = 2e-31
Identities = 67/132 (50%), Positives = 97/132 (73%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
+DHAKW P AT + +EPEI INEDLM +L+ EEK ++++SSPT VF + T++V V
Sbjct: 193 RDHAKWQPVATAVYRFEPEITINEDLMATLTEEEKIKFVESSPTPVFRYNDQTRKVEVNM 252
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
PE+Y+YD E +K AE MGKPGLV+I AK+D+F+FTVESTGA+ ++ NA+++L KL+
Sbjct: 253 PESYTYDGECLKWAEDMGKPGLVDIRAKEDTFLFTVESTGALPPETIVLNALKVLDTKLE 312
Query: 202 AVRLSEDTVEAD 167
+ D V+++
Sbjct: 313 MTKSELDIVKSE 324
[15][TOP]
>UniRef100_B9GHC8 Predicted protein (Fragment) n=1 Tax=Populus trichocarpa
RepID=B9GHC8_POPTR
Length = 87
Score = 126 bits (316), Expect = 1e-27
Identities = 62/85 (72%), Positives = 76/85 (89%)
Frame = -1
Query: 397 VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 218
V+V+DPEAY+ DD+VIKKAEA GKPG+++I AK+D+F+F V STGA+KASQL+ +AIEIL
Sbjct: 1 VVVLDPEAYTNDDKVIKKAEAKGKPGIIDIRAKEDNFVFIVGSTGAIKASQLVLDAIEIL 60
Query: 217 KQKLDAVRLSEDTVEADDQFGELGA 143
KQKLDAVRLS+D VEADDQF EL A
Sbjct: 61 KQKLDAVRLSDDIVEADDQFDELSA 85
[16][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 125 bits (315), Expect = 2e-27
Identities = 67/139 (48%), Positives = 94/139 (67%), Gaps = 14/139 (10%)
Frame = -1
Query: 556 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSS--------------PTRVFD 419
HAKWSP ATVTF +EPEI+INE+ ME+L+L EK+ W++SS +VF
Sbjct: 193 HAKWSPVATVTFHHEPEIYINEEKMEALTLAEKQNWVESSLDLPQNQSFPVPATLVKVFK 252
Query: 418 IDPVTQQVLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLL 239
+DP T +V+VV P AY+ E+ + EA G LVEI + DSFIF+VESTGA+ +++
Sbjct: 253 LDPATSKVMVVSPGAYT-SQELQRNVEAAGMAELVEIAWRDDSFIFSVESTGAIAPAKIC 311
Query: 238 QNAIEILKQKLDAVRLSED 182
+A+ ILK+KL A+R++ED
Sbjct: 312 VDAVNILKKKLLALRIAED 330
[17][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 115 bits (289), Expect = 2e-24
Identities = 56/125 (44%), Positives = 85/125 (68%), Gaps = 2/125 (1%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDP--VTQQVLV 389
K+HAKWSP+ T+ ++P I +N++ ++ L+ ++K+EW+ S PT+V+ P TQQV +
Sbjct: 170 KEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTI 229
Query: 388 VDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
DP Y E KKAE+ GKP LV + KQD FIFTVES+GA+K ++ AI+I+K+K
Sbjct: 230 EDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRK 289
Query: 208 LDAVR 194
L ++
Sbjct: 290 LTDIQ 294
[18][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 113 bits (282), Expect = 1e-23
Identities = 51/133 (38%), Positives = 86/133 (64%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAKWSP AT F ++P +H+N++L+++LS +K+ ++S P+++F D + +
Sbjct: 168 KDHAKWSPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYDADLDTISLTS 227
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
+ ++D E++KK MGK GL++I DSF F VESTG + A +++ A+ IL+ KLD
Sbjct: 228 TGSCTFDGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHILQTKLD 287
Query: 202 AVRLSEDTVEADD 164
V D +E+++
Sbjct: 288 TVGGELDMIESEN 300
[19][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 106 bits (264), Expect = 1e-21
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 17/142 (11%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLE-----------------EKKEWIDSSP 434
KDHAKWSP AT F Y P I IN L+ SL+ + EK ++S P
Sbjct: 168 KDHAKWSPVATAVFKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPEKAAIVESDP 227
Query: 433 TRVFDIDPVTQQVLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVK 254
+++F D T + PE+ +YD EV+KK +GKPGL+++ D F F VESTG +K
Sbjct: 228 SKMFKYDADTDTFTLTSPESCTYDGEVMKKVNELGKPGLIDVRPGLDCFTFIVESTGVLK 287
Query: 253 ASQLLQNAIEILKQKLDAVRLS 188
+++ A+ IL+ KLD + +S
Sbjct: 288 VEEVVLQAVHILQSKLDTIGVS 309
[20][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 95.9 bits (237), Expect = 2e-18
Identities = 48/126 (38%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K+HAKW P A T+ + PEIHIN++ M +L+LE+K+E +D+ P R+ ++D VT + VD
Sbjct: 183 KEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQKQELVDTCPDRILELDEVTGDIRAVD 242
Query: 382 P--EAYSYDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEI 221
+ +Y +++ AM K V + +D FIF VE+TGA+ A ++L +AI +
Sbjct: 243 NAWDICTYTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIFNVETTGAMDADEILLSAIRV 302
Query: 220 LKQKLD 203
L+ +L+
Sbjct: 303 LRNRLN 308
[21][TOP]
>UniRef100_A8ICX5 DNA-directed RNA polymerase II, 36 kDa polypeptide (Fragment) n=1
Tax=Chlamydomonas reinhardtii RepID=A8ICX5_CHLRE
Length = 275
Score = 93.6 bits (231), Expect = 9e-18
Identities = 41/108 (37%), Positives = 68/108 (62%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAK+ P AT F Y+ +I ++ M ++ +EK+ ++ S P++ F +P+T+ + V +
Sbjct: 168 KDHAKFIPVATAVFQYKAQITLSASAMADMTDDEKQAFVHSDPSKTFKFNPITRMIEVEN 227
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLL 239
E+Y YD+E + KA +G+P LV I QD FIF VE TG ++ ++
Sbjct: 228 EESYMYDEECVVKARELGRPDLVTIRQVQDHFIFRVEGTGVLEVKSIV 275
[22][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 92.8 bits (229), Expect = 2e-17
Identities = 49/124 (39%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K H+KW+P TF EPEI ++++ ++L +E+KK +++ PT+VF I+P T + V D
Sbjct: 172 KMHSKWNPVCISTFSVEPEIIFDQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQD 230
Query: 382 PEAYSYDDEVIKK-AEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 206
Y +E + K AE KP L++I+ K+D F F VE+TG +K ++L+ L+QKL
Sbjct: 231 HMKCMYCEECVYKCAEDFQKPKLIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKL 290
Query: 205 DAVR 194
D +R
Sbjct: 291 DFMR 294
[23][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 92.4 bits (228), Expect = 2e-17
Identities = 52/134 (38%), Positives = 83/134 (61%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKW+P TF +E E++ + +SLSL EK+ DS P VF +D Q ++V
Sbjct: 175 KMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNA 233
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
E + +E I+ AE+M KP L+++ K++ +IFTVES G +KA+ ++Q A+ +L++K+D
Sbjct: 234 IEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD 293
Query: 202 AVRLSEDTVEADDQ 161
+S+D A Q
Sbjct: 294 --EISQDLSFAQQQ 305
[24][TOP]
>UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE
Length = 297
Score = 92.4 bits (228), Expect = 2e-17
Identities = 52/134 (38%), Positives = 83/134 (61%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKW+P TF +E E++ + +SLSL EK+ DS P VF +D Q ++V
Sbjct: 164 KMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFAMD-ANQDLIVNA 222
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
E + +E I+ AE+M KP L+++ K++ +IFTVES G +KA+ ++Q A+ +L++K+D
Sbjct: 223 IEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKALIVLRKKVD 282
Query: 202 AVRLSEDTVEADDQ 161
+S+D A Q
Sbjct: 283 --EISQDLSFAQQQ 294
[25][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 89.7 bits (221), Expect = 1e-16
Identities = 51/130 (39%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAK+ P ATV Y +I +N D L E +++W++ P +VF D T QVL+ D
Sbjct: 187 KTHAKFMPVATVAMRYASDIVLNPDGFAKLDTEHRRQWVERCPRQVFRYDDRTGQVLLAD 246
Query: 382 PEAYSYDDEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIE 224
P+A + E + K K LV + K+D F FTVESTGA+ Q+L +A+E
Sbjct: 247 PDACIFCRECLLKEPPFNKLAEPLVFVRHKKDKRGYHDFTFTVESTGALPVLQILYDAVE 306
Query: 223 ILKQKLDAVR 194
+L++KL+ VR
Sbjct: 307 VLRRKLERVR 316
[26][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 85.5 bits (210), Expect = 3e-15
Identities = 40/56 (71%), Positives = 49/56 (87%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQV 395
KDHAKWSPAATVT+MYEP+I INE++M +L+ EEK + I+SSPT+VF IDPVT QV
Sbjct: 175 KDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230
[27][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 84.0 bits (206), Expect = 7e-15
Identities = 42/126 (33%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K+HAKW P A T+ + P I INE+ L+LE+K+E +++ P R+ ++D +T ++ V+
Sbjct: 172 KEHAKWCPVAVATYRFWPIITINEEACNMLTLEQKQELVEACPDRILELDEITGNLVAVE 231
Query: 382 P--EAYSYDDEVIKKAEAMGK----PGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEI 221
E ++ +++ AM K V + D F+F+VESTGA+ A ++L +++ +
Sbjct: 232 NAYEMATFTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFVFSVESTGAMDAEEILLSSLRV 291
Query: 220 LKQKLD 203
LK +L+
Sbjct: 292 LKDRLN 297
[28][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 84.0 bits (206), Expect = 7e-15
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 18/137 (13%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID---------- 413
K HAKW P AT TF E +I IN+ M ++SL+ ++E ++S P VF +
Sbjct: 171 KFHAKWIPVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFGLSASKSEFGMFD 230
Query: 412 -PVTQQVLVVDPEAYSYDD-----EVIKKAEAMG--KPGLVEINAKQDSFIFTVESTGAV 257
PV + + D E + D E + +G P L+ ++ K D F F VESTGA+
Sbjct: 231 KPVEKSTNIPDIEVLNSSDCIFCNECVNTCRNLGYINPPLIRVDTKPDKFHFVVESTGAM 290
Query: 256 KASQLLQNAIEILKQKL 206
A Q+++ A+EIL++KL
Sbjct: 291 PAEQIIEMALEILQEKL 307
[29][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 82.0 bits (201), Expect = 3e-14
Identities = 51/139 (36%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDL-MESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVV 386
K HAKW+P TV YEP I I+ + E LS+ E+K + S P RV D+D ++ VV
Sbjct: 183 KMHAKWNPTGTVAIRYEPVITIDRAIEYEKLSVAERKAIVRSCPKRVLDLD-AADRIQVV 241
Query: 385 DPEAYSYDDEVIKKAEAMGKP-GLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
+ + DE + KA K G++ + + D FTVESTGA ++ AI++ K+K
Sbjct: 242 RKDLCDFCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTGARPPEDIVMAAIKVFKEK 301
Query: 208 LDAVRLSEDTVEADDQFGE 152
+RL ED + + +FG+
Sbjct: 302 W--IRLHEDLGKWEQEFGQ 318
[30][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 76.6 bits (187), Expect = 1e-12
Identities = 39/118 (33%), Positives = 64/118 (54%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKW+P F +I IN++ M SL+ E+K+ + + P +VFD V ++V +
Sbjct: 154 KFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVGEKVFIRG 213
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
E + +E A +G+ LV + K D F+F VE TG Q+++ +E +K+K
Sbjct: 214 DENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271
[31][TOP]
>UniRef100_Q8IHT3 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8IHT3_PLAF7
Length = 333
Score = 76.3 bits (186), Expect = 2e-12
Identities = 46/127 (36%), Positives = 71/127 (55%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P N + E LS EEKK+ ++ P +VFDI+ +QQ+ V +
Sbjct: 210 KTHAKWSPVCTAVYKMYPHFSFNTN--EQLSYEEKKDLVNICPQKVFDIED-SQQIFVKN 266
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P + S I+K P + +++ FIFT+ESTG A+ + + A+ IL+QK+
Sbjct: 267 PLSCSTCRVCIEKY-----PKKISFQKEKNHFIFTIESTGCFSAADIFKKALFILRQKVI 321
Query: 202 AVRLSED 182
V+ + D
Sbjct: 322 NVKEALD 328
[32][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 75.5 bits (184), Expect = 3e-12
Identities = 38/118 (32%), Positives = 64/118 (54%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKW+P F +I IN++ M SL+ E+K+ + + P ++FD V ++V +
Sbjct: 154 KFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVGEKVFIRG 213
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
E + +E A +G+ LV + K D F+F VE TG Q+++ +E +K+K
Sbjct: 214 EENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLEEMKKK 271
[33][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 75.1 bits (183), Expect = 3e-12
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFD-IDPV----TQQ 398
K HAKWSP AT ++ +EPEI EDL+ E K++ S P VF ID T
Sbjct: 323 KVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGV 382
Query: 397 VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 218
+ V + Y D+ KA+ +G LV + + F FTVESTG + A Q+++ A +IL
Sbjct: 383 LRVENKMNCIYCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDIL 442
Query: 217 KQKL 206
K+
Sbjct: 443 LNKV 446
[34][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 75.1 bits (183), Expect = 3e-12
Identities = 45/127 (35%), Positives = 69/127 (54%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP +T T+ PE E + ++ KE+++ P VFDI+ +T +V V +
Sbjct: 229 KTHAKWSPVSTATYRLLPEFKFPEGYITG---KDAKEFVEVCPMNVFDIEDITGKVYVKN 285
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P + I+K P VEI + FIF++ESTG++ QL++ AI IL++K
Sbjct: 286 PRNCTTCRACIEKF-----PKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINILREKSH 340
Query: 202 AVRLSED 182
+ S D
Sbjct: 341 KINNSID 347
[35][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 73.6 bits (179), Expect = 1e-11
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFD-IDPV----TQQ 398
K HAKWSP AT ++ +EPEI EDL+ E K++ S P VF ID T
Sbjct: 323 KVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCPREVFSFIDDTATGGTGV 382
Query: 397 VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 218
+ V + + D+ KA+ +G LV + + F FTVESTG + A Q+++ A +IL
Sbjct: 383 LRVENKMNCIFCDQCKVKAQELGFRRLVRVEPNERKFHFTVESTGVMPAEQIVEMAFDIL 442
Query: 217 KQKL 206
K+
Sbjct: 443 LNKV 446
[36][TOP]
>UniRef100_C9ZKR1 DNA-directed RNA polymerase II subunit 3, putative n=2
Tax=Trypanosoma brucei RepID=C9ZKR1_TRYBG
Length = 337
Score = 71.6 bits (174), Expect = 4e-11
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 19/151 (12%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDS--------------SPTRV 425
K HAK+ P +TV+ YEPE+ +N+D++ SL E+ ++W+ S T
Sbjct: 161 KTHAKFMPVSTVSMRYEPEVILNKDVISSLDPEQLRQWMRSCVHRPHSIAESNGEGHTGH 220
Query: 424 FDIDPVTQQVLVVDPEAYSYDDEVI---KKAEAMGKPGLVEINAKQDSFIFTVESTGAVK 254
D++ + ++ L+ +P S+ + ++ K +A G +F FTVE+TG +
Sbjct: 221 IDVNKLCEECLLKEPSVVSFTEPLVFARPKKDARG----------HYNFTFTVETTGVLP 270
Query: 253 ASQLLQNAIEILKQKLDAVR--LSEDTVEAD 167
QL+++A+++L++KL V L+E V D
Sbjct: 271 VLQLIRDAVDVLRRKLQRVHECLTERVVPGD 301
[37][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 71.2 bits (173), Expect = 5e-11
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 8/130 (6%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDID-------PVT 404
K HAKW A V + EP I IN + E ++L EK + + S P +VF + T
Sbjct: 218 KFHAKWM-VANVAYKMEPVITINRQVAEKMNLNEKTQIVQSCPRKVFKLSNPHGAYSTAT 276
Query: 403 QQVLVVDPEAYS-YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAI 227
+ +V+D Y DE + +A MG L+ + + F FT+ES GA+ ++L+ +
Sbjct: 277 KAEIVIDNNLNCIYCDECLNQAREMGYRDLIRVQPDETKFHFTIESNGAISPEKILEICL 336
Query: 226 EILKQKLDAV 197
+ L++KL ++
Sbjct: 337 DTLEEKLGSL 346
[38][TOP]
>UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9T5P0_PHYPA
Length = 360
Score = 69.7 bits (169), Expect = 1e-10
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = -1
Query: 556 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV--TQQVLVVD 383
HAKWSP AT + PE+++ ED+ L+ +E + PT VFDI+ V ++ +V
Sbjct: 241 HAKWSPVATARYRMLPEVNLMEDIQGKLA----EELVQKCPTGVFDIEDVGTVKKAIVAR 296
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
P + E ++ + + V++ +D FIFT+ESTGA++ L AI+IL +K
Sbjct: 297 PRNCTLCRECVRGTDWDKR---VQLTRVKDHFIFTIESTGALRPEVLFTEAIKILNEK 351
[39][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 68.9 bits (167), Expect = 2e-10
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ----- 398
K HAKW P + TF E ++ IN L +L+L+++KE ++ P VF + T +
Sbjct: 172 KFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNTSKTEYAL 231
Query: 397 -----------------VLVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTV 275
+ VV ++ + +E + + G P L+ ++ K D F F V
Sbjct: 232 NKNSTYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKPDKFHFLV 291
Query: 274 ESTGAVKASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 128
ESTGA+ +++ A EIL++KL+ LS ++ L + GG
Sbjct: 292 ESTGALPVESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338
[40][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 68.9 bits (167), Expect = 2e-10
Identities = 47/137 (34%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ----- 398
K HAKW A V + EP N LME LS EEK S P VF V +
Sbjct: 179 KFHAKWI-VANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFKYTGVRSEAPSFL 237
Query: 397 -------------VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAV 257
+ VVD A Y DE I +G L+ I + F FT+ESTGA+
Sbjct: 238 GPSDKTFKLDAAGLHVVDKLACIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGAI 297
Query: 256 KASQLLQNAIEILKQKL 206
++L+ A+ +L++KL
Sbjct: 298 PPEKILEIALVVLEKKL 314
[41][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 68.2 bits (165), Expect = 4e-10
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 24/169 (14%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ----- 398
K HAKW P + TF E ++ IN L +L+L+++KE ++ P VF + T +
Sbjct: 172 KFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGSTSKTEYAL 231
Query: 397 -----------------VLVVDPEAYSYDDEVIKKAEAMG--KPGLVEINAKQDSFIFTV 275
+ VV ++ + +E + + G P L+ ++ K D F F V
Sbjct: 232 NKNSAYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTKPDKFHFLV 291
Query: 274 ESTGAVKASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 128
ESTGA+ +++ A EIL++KL+ LS ++ L + GG
Sbjct: 292 ESTGALPVESIVELAFEILQEKLNT--LSRGVARSETAQSGLDTNGSGG 338
[42][TOP]
>UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR
Length = 390
Score = 67.4 bits (163), Expect = 7e-10
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP T + PE+ L+E++ E+ +E I P+ VFDI+ ++ +
Sbjct: 267 KTHAKWSPVGTAWYRMFPEVV----LLENIKGEDAEELIRKCPSGVFDIEDTGNAKKKAI 322
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V D A + E I+ E K V ++ +D FIFT+ESTGA+ L A++IL+
Sbjct: 323 VADSRACTLCRECIRGDEEWEKR--VALHRVKDHFIFTIESTGALPPEVLFTEAVKILEA 380
Query: 211 KLDAV 197
K + V
Sbjct: 381 KCERV 385
[43][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 67.4 bits (163), Expect = 7e-10
Identities = 43/118 (36%), Positives = 60/118 (50%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + EPEI E S+ E+ + P VFDI+ T +
Sbjct: 222 KTHAKWSPVCTAVYRLEPEIVFKE----SIQGEDASDLCSLCPMGVFDIEDTTGEAYARY 277
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
P + I++ P +E+ +D FIF++ESTG+V A L + AIEILK+K
Sbjct: 278 PRNCTTCRACIERF-----PKEIELRKIKDHFIFSIESTGSVPAPLLFKMAIEILKEK 330
[44][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 67.0 bits (162), Expect = 9e-10
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAK+ P ATV Y PEI +N + ++L + +EW+ P VF T QV V D
Sbjct: 162 KTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQD 221
Query: 382 PEAYSYDDEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIE 224
+A + E + + LV + K++ F FTVESTG + Q++ +A+
Sbjct: 222 EDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVA 281
Query: 223 ILKQKLDAV 197
++++KL V
Sbjct: 282 VVRKKLQRV 290
[45][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 67.0 bits (162), Expect = 9e-10
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 7/129 (5%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAK+ P ATV Y PEI +N + ++L + +EW+ P VF T QV V D
Sbjct: 162 KTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVERTGQVEVQD 221
Query: 382 PEAYSYDDEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIE 224
+A + E + + LV + K++ F FTVESTG + Q++ +A+
Sbjct: 222 EDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPVLQIVYDAVT 281
Query: 223 ILKQKLDAV 197
++++KL V
Sbjct: 282 VVRRKLQRV 290
[46][TOP]
>UniRef100_C5XXF5 Putative uncharacterized protein Sb04g006420 n=1 Tax=Sorghum
bicolor RepID=C5XXF5_SORBI
Length = 370
Score = 66.6 bits (161), Expect = 1e-09
Identities = 44/126 (34%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVL 392
K HAKWSP AT + PE+ I +D+ ++ +E + P VFDI+ + ++ +
Sbjct: 249 KVHAKWSPVATAWYRMLPEVVILKDIEG----DDAEELVKKCPVNVFDIEDLGNGGKRAV 304
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPG-LVEINAKQDSFIFTVESTGAVKASQLLQNAIEILK 215
V P A + E + MG G VE+ +D FIFT+ESTGA+ L A++IL+
Sbjct: 305 VAKPRACTLCRECV-----MGPNGNQVELRRVRDHFIFTIESTGALPPEVLFTEAVKILE 359
Query: 214 QKLDAV 197
+K + V
Sbjct: 360 EKCERV 365
[47][TOP]
>UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1
Tax=Ricinus communis RepID=B9S9W7_RICCO
Length = 374
Score = 66.6 bits (161), Expect = 1e-09
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP AT + PE+ + ED+ + ++ E K+ P VFDI+ + ++
Sbjct: 252 KTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKK----CPVNVFDIEDIGNGKKRAT 307
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P A + E I+ E + V + +D FIFT+ESTGA+ L A+++L+
Sbjct: 308 VARPRACTLCRECIRGGEWDKR---VSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLED 364
Query: 211 KLDAV 197
K + V
Sbjct: 365 KCERV 369
[48][TOP]
>UniRef100_C5M6J2 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Candida tropicalis MYA-3404 RepID=C5M6J2_CANTT
Length = 337
Score = 65.9 bits (159), Expect = 2e-09
Identities = 42/122 (34%), Positives = 65/122 (53%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I E + L+ + +K + P V ID T + V D
Sbjct: 217 DHAKFSPVATASYRLLPVIDIKEPITGKLAEKFQKCF----PPGVIGIDSKTGEAYVADA 272
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ ++D FIF VESTGA+ ++ ++ ILK K +
Sbjct: 273 RKDTVSREVLRHPEFDGK---VKLGRQRDHFIFNVESTGAMTPDEIFCKSVRILKNKAEY 329
Query: 199 VR 194
+R
Sbjct: 330 LR 331
[49][TOP]
>UniRef100_Q54SN4 DNA-directed RNA polymerases I and III subunit rpac1 n=1
Tax=Dictyostelium discoideum RepID=RPAC1_DICDI
Length = 345
Score = 64.7 bits (156), Expect = 5e-09
Identities = 39/125 (31%), Positives = 70/125 (56%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
++H KWSP T ++ +P I +++ S+ ++ + ++ P +VFDI+ + QV+
Sbjct: 223 REHIKWSPVCTASYRLQPVISVDK----SIKGDKANQLLEKCPKKVFDIED-SGQVVAAR 277
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P + E I+ E V+I +D FIF++ESTGA+K+ ++ Q AI+I +K +
Sbjct: 278 PLDCTMCRECIRDPEFEQN---VKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCN 334
Query: 202 AVRLS 188
V S
Sbjct: 335 IVEES 339
[50][TOP]
>UniRef100_Q10MU2 Os03g0295400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU2_ORYSJ
Length = 379
Score = 64.3 bits (155), Expect = 6e-09
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 6/128 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP AT + PE+ + E++ ++ + + + P VFDI+ + ++ +
Sbjct: 251 KVHAKWSPVATAWYRMLPEVVLREEIKDA----DAEMLVAKCPVNVFDIEDLGNGEKRAV 306
Query: 391 VVDPEAYSYDDEVIK--KAEAMGKP-GLVEINAKQDSFIFTVESTGAVKASQLLQNAIEI 221
V P A + + + E MG VE+ +D FIFT+ESTGA+ L A+ I
Sbjct: 307 VARPRACTLCRQCVMGPTGEVMGPTVEQVELRRVRDHFIFTIESTGALPPEMLFTEAVRI 366
Query: 220 LKQKLDAV 197
L++K + V
Sbjct: 367 LEEKCERV 374
[51][TOP]
>UniRef100_Q6FXP6 Strain CBS138 chromosome B complete sequence n=1 Tax=Candida
glabrata RepID=Q6FXP6_CANGA
Length = 334
Score = 64.3 bits (155), Expect = 6e-09
Identities = 41/128 (32%), Positives = 70/128 (54%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAK+SP AT ++ P I I +E ++ + K + P V I+ + V+D
Sbjct: 214 KDHAKFSPVATASYRLLPHIEI----LEPITGDSAKRFQACFPKGVIGINE-NGEAYVLD 268
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P + EV++ E GK V++ +D F+F VESTGA++ ++ +I+ILK+K +
Sbjct: 269 PRKDTVSREVLRHEEFEGK---VKLGRVRDHFVFNVESTGAMQPEDIVLKSIDILKKKAE 325
Query: 202 AVRLSEDT 179
++ + T
Sbjct: 326 YLKKCQIT 333
[52][TOP]
>UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY85_CLAL4
Length = 333
Score = 64.3 bits (155), Expect = 6e-09
Identities = 40/122 (32%), Positives = 66/122 (54%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I D++E +S E+ + P+ V ID + V D
Sbjct: 214 DHAKFSPVATASYRLMPVI----DILEPISGEQAVRFQKCFPSGVIGIDE-KGEAYVADA 268
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ ++ FIF VESTGA+ +++ ++ +LK K+D
Sbjct: 269 RKDTVSREVLRHEEFSGK---VKLGRDREHFIFNVESTGAMSPAEIFLKSVRVLKNKVDY 325
Query: 199 VR 194
+R
Sbjct: 326 LR 327
[53][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 63.2 bits (152), Expect = 1e-08
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ----- 398
K HAKW A V + EP N LME LS +EK S P VF V +
Sbjct: 179 KFHAKWI-VANVNYKMEPRFSFNSALMEQLSSDEKAGIAASCPRNVFKYTGVRSENPSFL 237
Query: 397 -------------VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAV 257
+ VV+ Y DE I +G L+ I + F FT+ESTG++
Sbjct: 238 GHSDKTFKLDAGGLQVVNKLDCIYCDECINYCRELGHKDLIRIQPDESKFHFTIESTGSI 297
Query: 256 KASQLLQNAIEILKQKLDAVRLSEDTVEADDQFGELGAHMRGG 128
++L+ A+ +L++KL ++ + ++ AH R G
Sbjct: 298 PPEKILEIALIVLEKKLQDLQSNFTEAQSRTLGSTTTAHHREG 340
[54][TOP]
>UniRef100_Q6BV37 DEHA2C05654p n=1 Tax=Debaryomyces hansenii RepID=Q6BV37_DEBHA
Length = 335
Score = 63.2 bits (152), Expect = 1e-08
Identities = 41/122 (33%), Positives = 64/122 (52%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I E + E K + P+ V DI+ + +V D
Sbjct: 216 DHAKFSPVATASYRLMPVITITEPIKG----ESGKRFQKCFPSGVIDINK-NGEAVVKDS 270
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ K+D FIF VESTGA+ ++ ++ +LK K +
Sbjct: 271 RKDTVSREVLRHEEFNGK---VKLGRKRDHFIFNVESTGAMSPEEIFFKSVRVLKNKAEY 327
Query: 199 VR 194
+R
Sbjct: 328 LR 329
[55][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein n=1 Tax=Babesia bovis
RepID=A7AQ72_BABBO
Length = 319
Score = 62.8 bits (151), Expect = 2e-08
Identities = 40/118 (33%), Positives = 62/118 (52%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + ++P+I +ED E L+ +E +E + P VF D ++ +
Sbjct: 195 KTHAKWSPVCTAVYRFKPDITFSED--EPLTNDEVEELVQICPMGVFSADK--GRITTIR 250
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
P + +++ P V I + FIF+VESTGA+ + QL AI +LK+K
Sbjct: 251 PYNCTSCRACLERF-----PKRVIIKKLSNHFIFSVESTGAIPSGQLFLKAIGVLKEK 303
[56][TOP]
>UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019857F6
Length = 372
Score = 62.4 bits (150), Expect = 2e-08
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ---QVL 392
K HAKWSP AT + PE+ L++ + E+ +E + P VFDI+ + + +
Sbjct: 250 KTHAKWSPVATAWYRMLPEVV----LLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKAT 305
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P A + E I+ + K V I ++ FIFT+ESTGA+ L A+++L+
Sbjct: 306 VARPRACTLCRECIR-GDDWDKH--VAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLED 362
Query: 211 KLDAV 197
K + V
Sbjct: 363 KCERV 367
[57][TOP]
>UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q9B1_VITVI
Length = 362
Score = 62.4 bits (150), Expect = 2e-08
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ---QVL 392
K HAKWSP AT + PE+ L++ + E+ +E + P VFDI+ + + +
Sbjct: 240 KTHAKWSPVATAWYRMLPEVV----LLQEIEDEKAEELVKKCPVNVFDIEDIAKGKKKAT 295
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P A + E I+ + K V I ++ FIFT+ESTGA+ L A+++L+
Sbjct: 296 VARPRACTLCRECIR-GDDWDKH--VAIRRVKNHFIFTIESTGALPPEVLFNEAVKVLED 352
Query: 211 KLDAV 197
K + V
Sbjct: 353 KCERV 357
[58][TOP]
>UniRef100_A5K591 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium vivax
RepID=A5K591_PLAVI
Length = 333
Score = 62.0 bits (149), Expect = 3e-08
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P N E + EEKK+ ++ P VFD++ + ++ +
Sbjct: 210 KTHAKWSPVCTAVYKMYPAFSFNT--CEKFTQEEKKDLVNICPKNVFDVED-SDTLVAKN 266
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P S I+K P + ++ FIFT+ESTG ++ + + A+ ILK K+
Sbjct: 267 PLNCSSCRVCIEKY-----PKKISFEKVKNHFIFTIESTGCFSSADIFRKALLILKDKVV 321
Query: 202 AVR-LSEDTVEA 170
+V+ + ED +A
Sbjct: 322 SVKEVLEDQTKA 333
[59][TOP]
>UniRef100_Q4YX04 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium berghei
RepID=Q4YX04_PLABE
Length = 334
Score = 61.6 bits (148), Expect = 4e-08
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P D+ E + EKK+ + P VFDI+ + ++ +
Sbjct: 213 KTHAKWSPVCTAVYKMFPTFDF--DVHEKFTNYEKKDILSICPKNVFDIEE-SGNLVAKN 269
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P S I+K P + K++ FIFTVESTG ++ + + A+ ILK+K+
Sbjct: 270 PLDCSSCRACIEKY-----PQKISFQKKKNHFIFTVESTGCFSSANIFKKALNILKEKVM 324
Query: 202 AVR--LSEDT 179
V+ L E T
Sbjct: 325 NVKEMLEEQT 334
[60][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 60.8 bits (146), Expect = 7e-08
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAK+ P ATV Y EI +N + ++L +EW+ P VF T QV V D
Sbjct: 162 KTHAKFMPVATVAMRYAAEILLNPNGFQALGKTNAREWVARCPRNVFRFVERTGQVEVQD 221
Query: 382 PEAYSYDDEVIKKAEAMGK--PGLVEINAKQD-----SFIFTVESTGAVKASQLLQNAIE 224
A + E + K LV + ++ F F VESTG + Q++ +A+
Sbjct: 222 EGACIFCRECTSQEPPFDKLPEPLVFVRQRKSKMGYFDFTFVVESTGVLPVLQIVYDAVA 281
Query: 223 ILKQKLDAV 197
+L++KL V
Sbjct: 282 VLRKKLQRV 290
[61][TOP]
>UniRef100_C5DTY7 ZYRO0C12364p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DTY7_ZYGRC
Length = 335
Score = 60.5 bits (145), Expect = 9e-08
Identities = 37/122 (30%), Positives = 63/122 (51%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I E + L+ + +K + P V I+ T + V D
Sbjct: 215 DHAKFSPVATASYRLLPHIDIREPIKGELAQKFQKCF----PPGVIGINESTDEAYVQDA 270
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E K V++ +D F+F VESTGA+ ++ ++ +LK K +
Sbjct: 271 RKDTVSREVLRHEEFSNK---VKLGRVRDHFVFNVESTGAMTPEEIFFKSVRVLKNKAEY 327
Query: 199 VR 194
++
Sbjct: 328 LK 329
[62][TOP]
>UniRef100_B3L5N8 DNA-diDNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L5N8_PLAKH
Length = 333
Score = 60.1 bits (144), Expect = 1e-07
Identities = 37/123 (30%), Positives = 62/123 (50%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P N E+ + EEK + ++ P VFD++ + ++ +
Sbjct: 210 KTHAKWSPVCTAVYKMYPSFSFNT--CENFTKEEKNDLVNICPRNVFDVED-SDTLVAKN 266
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P S I+K P + ++ FIFT+ESTG ++ + + A+ ILK K+
Sbjct: 267 PLNCSSCRVCIEKY-----PKKISFEKVKNHFIFTIESTGCFSSADIFRKALLILKDKVV 321
Query: 202 AVR 194
+V+
Sbjct: 322 SVK 324
[63][TOP]
>UniRef100_Q59ZF5 Putative uncharacterized protein RPC40 n=1 Tax=Candida albicans
RepID=Q59ZF5_CANAL
Length = 369
Score = 60.1 bits (144), Expect = 1e-07
Identities = 40/122 (32%), Positives = 64/122 (52%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I E + L+ K++ P V ID + V D
Sbjct: 250 DHAKFSPVATASYRLLPVIDIKEPITGELA----KKFQKCFPPGVIGID-ANGKAYVKDA 304
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ ++D FIF VESTGA+ +++ ++ +LK K +
Sbjct: 305 RKDTVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEY 361
Query: 199 VR 194
+R
Sbjct: 362 LR 363
[64][TOP]
>UniRef100_C4YIK8 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Candida albicans RepID=C4YIK8_CANAL
Length = 336
Score = 60.1 bits (144), Expect = 1e-07
Identities = 40/122 (32%), Positives = 64/122 (52%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I E + L+ K++ P V ID + V D
Sbjct: 217 DHAKFSPVATASYRLLPVIDIKEPITGELA----KKFQKCFPPGVIGID-ANGKAYVKDA 271
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ ++D FIF VESTGA+ +++ ++ +LK K +
Sbjct: 272 RKDTVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEY 328
Query: 199 VR 194
+R
Sbjct: 329 LR 330
[65][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 59.7 bits (143), Expect = 1e-07
Identities = 32/130 (24%), Positives = 64/130 (49%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
++HAKWSP T+ I E + + +EK+E + S P + + + + V +
Sbjct: 191 RNHAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVVASCPKKCLKMG-LDDNIQVAN 249
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
E ++ ++ I+ AE G + I +K+ F+F VE+ G++ ++ + L KLD
Sbjct: 250 FEDCTFCNQCIRTAEVHGHKDAIVIQSKRGLFVFNVETIGSLSPENVVTRGFQALTNKLD 309
Query: 202 AVRLSEDTVE 173
+ + D ++
Sbjct: 310 QFKKNVDELQ 319
[66][TOP]
>UniRef100_A1RWW0 DNA-directed RNA polymerase, subunit D n=1 Tax=Thermofilum pendens
Hrk 5 RepID=A1RWW0_THEPD
Length = 283
Score = 59.7 bits (143), Expect = 1e-07
Identities = 40/120 (33%), Positives = 61/120 (50%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
+ HAKW P V + Y+P + I L E L +E + I + P RVF V ++ V++
Sbjct: 152 RQHAKWQPVGPVGYKYKPVVRI---LREDLPEDEALKIISTCPRRVFGY--VDGKLTVIN 206
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
S E +K PG+VE++ + I TVES G + +LL A ++L +KLD
Sbjct: 207 EMQCSLCRECEEKF-----PGIVEVDGDPSNIILTVESIGCLPPEKLLAVAADVLSKKLD 261
[67][TOP]
>UniRef100_Q7RN53 DNA-directed RNA polymerases i and iii 40 kDa polypeptide n=1
Tax=Plasmodium yoelii yoelii RepID=Q7RN53_PLAYO
Length = 286
Score = 59.3 bits (142), Expect = 2e-07
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P N D+ E + EKK+ + P VFDI+ + ++ +
Sbjct: 164 KTHAKWSPVCTAVYKMFPSF--NFDVHEKFTNYEKKDLVTICPKNVFDIEE-SGNLVAKN 220
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P S I+K P + ++ FIFTVESTG ++ + + A+ ILK K+
Sbjct: 221 PLDCSSCRACIEKY-----PQKITFQKTKNHFIFTVESTGCFPSADIFKKALNILKVKVI 275
Query: 202 AVR--LSEDT 179
V+ L E T
Sbjct: 276 NVKEMLEEQT 285
[68][TOP]
>UniRef100_Q6CQS0 KLLA0D14861p n=1 Tax=Kluyveromyces lactis RepID=Q6CQS0_KLULA
Length = 334
Score = 59.3 bits (142), Expect = 2e-07
Identities = 35/122 (28%), Positives = 65/122 (53%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP +T ++ P I I + + ++ K+++ P V D++ + + DP
Sbjct: 215 DHAKFSPVSTASYRLLPHIQITQPITG----DDAKKFVKCFPKGVADVNE-KGEAYIKDP 269
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ +D FIF VES+GA+ ++ ++ ILK K +
Sbjct: 270 RKDTVSREVLRHDEFQGK---VKLGRVRDHFIFNVESSGAMTPEEIFFKSVRILKNKAEY 326
Query: 199 VR 194
++
Sbjct: 327 LK 328
[69][TOP]
>UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TAS0_SOYBN
Length = 388
Score = 58.9 bits (141), Expect = 3e-07
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP AT + PE+ + E + + L+ E K + P VFDI+ + ++
Sbjct: 265 KTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNK----CPVNVFDIEDIGKGKRRAK 320
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P + E I+ + V + ++ FIFT+ESTGA+ L A++IL+
Sbjct: 321 VARPRDCTLCRECIRGGKEW--EDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILED 378
Query: 211 KLDAV 197
K + V
Sbjct: 379 KCERV 383
[70][TOP]
>UniRef100_A9V9D0 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V9D0_MONBE
Length = 363
Score = 58.9 bits (141), Expect = 3e-07
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ---QVL 392
K HAKWSP AT ++ PEI + E ++ L+ + +K + SP V DI ++ +
Sbjct: 220 KTHAKWSPVATASYRLMPEIILKEPIVGPLAHKLQKCF---SPG-VCDIVKNSKGEDEAK 275
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
+V+P A + EV + + K VE+N +D FIF+VES GA+ L+ A++ LK
Sbjct: 276 IVNPRADTVSREVFRHDDLRDK---VELNRVRDHFIFSVESVGALAPDVLVLMALQELKS 332
Query: 211 KLDAV 197
K V
Sbjct: 333 KCQRV 337
[71][TOP]
>UniRef100_B9WBJ1 DNA-directed RNA polymerases I and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9WBJ1_CANDC
Length = 336
Score = 58.9 bits (141), Expect = 3e-07
Identities = 39/122 (31%), Positives = 64/122 (52%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I + + L+ K++ P V ID + V D
Sbjct: 217 DHAKFSPVATASYRLLPVIDIKQPITGELA----KKFQKCFPPGVIGID-TNGKAYVKDA 271
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ ++D FIF VESTGA+ +++ ++ +LK K +
Sbjct: 272 RKDTVSREVLRHPEFDGK---VQLGRQRDHFIFNVESTGAMPPAEIFFKSVRLLKNKAEY 328
Query: 199 VR 194
+R
Sbjct: 329 LR 330
[72][TOP]
>UniRef100_A8PVP1 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8PVP1_MALGO
Length = 213
Score = 58.9 bits (141), Expect = 3e-07
Identities = 43/129 (33%), Positives = 65/129 (50%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAK+SP AT T+ P I I + + E L ++I P V V V D
Sbjct: 87 KDHAKFSPVATATYRLLPLIEILKPIPEPLI----PKFISCFPEGVIHKGG-ENGVYVAD 141
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
+ EV++ E G V + QD F+F+VESTG + LL +IE+L++K+
Sbjct: 142 ARKDTVTREVLRYPEF---EGYVRLGRIQDHFLFSVESTGVYEPEDLLPASIEVLRKKIA 198
Query: 202 AVRLSEDTV 176
++L+ D +
Sbjct: 199 LLKLALDAI 207
[73][TOP]
>UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1
Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH
Length = 336
Score = 58.5 bits (140), Expect = 3e-07
Identities = 38/125 (30%), Positives = 66/125 (52%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + PEI+IN D+ + + E K + P +V+D+ + +V +
Sbjct: 222 KTHAKWSPVCTAYYRLMPEININSDITGAKAQELK----ERCPLKVYDVQ--NNKAIVSN 275
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
A + E I++ E +E+ K++ FI +S G + ++++ AI+ILKQK
Sbjct: 276 ERACTMCRECIREDEEFNSK--IELAKKKEHFI---QSVGIYEPHEIVKEAIQILKQKAS 330
Query: 202 AVRLS 188
+ L+
Sbjct: 331 SFMLN 335
[74][TOP]
>UniRef100_C5L9Q7 DNA-directed RNA polymerase I, putative n=1 Tax=Perkinsus marinus
ATCC 50983 RepID=C5L9Q7_9ALVE
Length = 310
Score = 58.5 bits (140), Expect = 3e-07
Identities = 43/137 (31%), Positives = 66/137 (48%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T T+ P+I + E + + E K++ P VFDI+ +V +
Sbjct: 167 KIHAKWSPVCTATYRLMPDIILKEPIEGA----EAKKFKSVCPMGVFDIEDGA--AVVKN 220
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P A + + I+ G V + +D FIFTVES G + A Q+ A +++ K
Sbjct: 221 PRACTTCRQCIEPGN--GFADKVSLGKLKDHFIFTVESVGQIPAPQIFAQAAVVMQNKCR 278
Query: 202 AVRLSEDTVEADDQFGE 152
V+ S +DQ G+
Sbjct: 279 LVKKS-----LEDQMGK 290
[75][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
Length = 316
Score = 58.5 bits (140), Expect = 3e-07
Identities = 36/119 (30%), Positives = 59/119 (49%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P I I L + +++ P +VF + Q+ VV+
Sbjct: 200 KRHAKWSPVCTAFYKLMPSITIKNQL----DAQRQEKLASLCPMKVFGVKG--NQIKVVN 253
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 206
P + E +++A K VE+N + FIF++ES G +A ++ AIE+ + K+
Sbjct: 254 PRNCTTCRECVREANGFEKD--VELNKIDNHFIFSIESVGQYEAKDIMLQAIEVFRSKV 310
[76][TOP]
>UniRef100_B0CTH8 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0CTH8_LACBS
Length = 353
Score = 58.5 bits (140), Expect = 3e-07
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAK+ P AT ++ P I I + + L + +K + SP V IDP T++V V +
Sbjct: 215 KDHAKYCPVATASYRLLPHIKIKKPIPPHLGEKFQKCF---SPG-VIKIDPRTKEVSVDE 270
Query: 382 PEAY--SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
+ EV++ E VE++ +D F+F VES GA ++L AI+++++K
Sbjct: 271 HNVRKDTVSREVLRHPEFKDS---VELSRVRDFFLFNVESEGAYSPERMLTEAIKVMREK 327
Query: 208 LDAVRLSE----DTVEAD 167
L +R + D VE D
Sbjct: 328 LKKIRQAAEALYDQVEVD 345
[77][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E468FB
Length = 335
Score = 58.2 bits (139), Expect = 4e-07
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVV- 386
KDHAK+SP AT ++ PEI + ED++ E K+ + V D++ + V
Sbjct: 205 KDHAKFSPVATASYRLMPEIILTEDIVG----ERAKKLQQCFSSGVIDVEKRNGVPVAVV 260
Query: 385 --------DPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNA 230
E +S+DD V++N +D FIF+VESTGA++ L+ A
Sbjct: 261 ACPRRDTCGREVFSHDD----------LKDCVKLNRIRDHFIFSVESTGALRPEVLVSEA 310
Query: 229 IEILKQK 209
I ILK K
Sbjct: 311 INILKSK 317
[78][TOP]
>UniRef100_Q9C6C2 RNA polymerase subunit; 10595-12672 n=1 Tax=Arabidopsis thaliana
RepID=Q9C6C2_ARATH
Length = 375
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP T + PE+ + ++ + L+ + ++ P VFDI+ + ++
Sbjct: 255 KTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNVFDIEDMGKGKKRAT 310
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P + E ++ + + V++ + ++ FIF +ESTG++ L A++IL+
Sbjct: 311 VAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEA 367
Query: 211 KLDAV 197
K +A+
Sbjct: 368 KCEAI 372
[79][TOP]
>UniRef100_Q8LD68 RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q8LD68_ARATH
Length = 375
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP T + PE+ + ++ + L+ + ++ P VFDI+ + ++
Sbjct: 255 KTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNVFDIEDMGKGKKRAT 310
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P + E ++ + + V++ + ++ FIF +ESTG++ L A++IL+
Sbjct: 311 VAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEA 367
Query: 211 KLDAV 197
K +A+
Sbjct: 368 KCEAI 372
[80][TOP]
>UniRef100_Q39216 RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q39216_ARATH
Length = 385
Score = 58.2 bits (139), Expect = 4e-07
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ---QVL 392
K HAKWSP AT + PE+ L++ + +E + P +VFDI+ + Q +
Sbjct: 262 KTHAKWSPVATAWYRMLPEVV----LLKEFEGKHAEELVKVCPKKVFDIEDMGQGRKRAT 317
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P S E I+ + + V++ ++ FIFT+ESTG+ L A++IL+
Sbjct: 318 VARPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILED 375
Query: 211 KLDAV 197
K + V
Sbjct: 376 KCERV 380
[81][TOP]
>UniRef100_Q39215 RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q39215_ARATH
Length = 375
Score = 58.2 bits (139), Expect = 4e-07
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPV---TQQVL 392
K HAKWSP T + PE+ + ++ + L+ + ++ P VFDI+ + ++
Sbjct: 255 KTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNVFDIEDMGKGKKRAT 310
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V P + E ++ + + V++ + ++ FIF +ESTG++ L A++IL+
Sbjct: 311 VAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEA 367
Query: 211 KLDAV 197
K +A+
Sbjct: 368 KCEAI 372
[82][TOP]
>UniRef100_Q4X0E8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Aspergillus fumigatus RepID=Q4X0E8_ASPFU
Length = 374
Score = 58.2 bits (139), Expect = 4e-07
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------ 398
DHAK+SP AT T+ P+I I ++ E+ K++ P V +++PVT +
Sbjct: 235 DHAKFSPVATATYRLMPDIKILRPIIG----EDAKKFAKCFPKGVIELEPVTSREAAQKG 290
Query: 397 -----------VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
+V DP + E ++ E GK V++ +D FIF VESTG ++
Sbjct: 291 SEYEGRAGEMKAVVRDPFKDTVSRECLRHEEFQGK---VKLGRIRDHFIFNVESTGQFES 347
Query: 250 SQLLQNAIEILKQK 209
L ++++LK K
Sbjct: 348 DYLFLESVKVLKLK 361
[83][TOP]
>UniRef100_B0XTN4 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Aspergillus fumigatus A1163 RepID=B0XTN4_ASPFC
Length = 414
Score = 58.2 bits (139), Expect = 4e-07
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------ 398
DHAK+SP AT T+ P+I I ++ E+ K++ P V +++PVT +
Sbjct: 275 DHAKFSPVATATYRLMPDIKILRPIIG----EDAKKFAKCFPKGVIELEPVTSREAAQKG 330
Query: 397 -----------VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
+V DP + E ++ E GK V++ +D FIF VESTG ++
Sbjct: 331 SEYEGRAGEMKAVVRDPFKDTVSRECLRHEEFQGK---VKLGRIRDHFIFNVESTGQFES 387
Query: 250 SQLLQNAIEILKQK 209
L ++++LK K
Sbjct: 388 DYLFLESVKVLKLK 401
[84][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
Length = 316
Score = 57.8 bits (138), Expect = 6e-07
Identities = 36/119 (30%), Positives = 59/119 (49%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T + P I I L + +++ P +VF I Q+ VV+
Sbjct: 200 KRHAKWSPVCTAFYKLMPSITIKNQL----DAQRQEKLASICPMKVFGIKG--NQIKVVN 253
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 206
P + E +++A K VE+N + FIF++ES G +A ++ AI++ + K+
Sbjct: 254 PRNCTTCRECVREANGFEKD--VELNKIDNHFIFSIESVGQYEAKDIMLQAIDVFRSKV 310
[85][TOP]
>UniRef100_A1DHS7 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Neosartorya fischeri NRRL 181 RepID=A1DHS7_NEOFI
Length = 374
Score = 57.8 bits (138), Expect = 6e-07
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQ------ 398
DHAK+SP AT T+ P+I I ++ E+ K++ P V +++PVT +
Sbjct: 235 DHAKFSPVATATYRLMPDIKILRPIIG----EDAKKFAKCFPKGVVELEPVTSREAAQKG 290
Query: 397 -----------VLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
+V DP + E ++ E GK V++ +D FIF VESTG ++
Sbjct: 291 SEYEGRAGEMKAVVRDPFKDTVSRECLRHEEFQGK---VKLGRIRDHFIFNVESTGQFES 347
Query: 250 SQLLQNAIEILKQK 209
L ++++LK K
Sbjct: 348 DYLFLESVKVLKLK 361
[86][TOP]
>UniRef100_UPI000151BDE7 conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151BDE7
Length = 333
Score = 57.0 bits (136), Expect = 1e-06
Identities = 39/122 (31%), Positives = 62/122 (50%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP +T ++ +I I E + L+ K + P+ V I+ T V D
Sbjct: 215 DHAKFSPVSTASYRLMSDIKITEPITGELA----KRFQKCFPSGVIGIENDT--AFVKDA 268
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ +D FIF VESTGA+ ++ ++ +LK K D
Sbjct: 269 RKDTVSREVLRHEEFNGK---VKLGRIRDHFIFNVESTGAMPPEEIFFKSVRVLKNKADY 325
Query: 199 VR 194
+R
Sbjct: 326 LR 327
[87][TOP]
>UniRef100_C5LDA1 DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LDA1_9ALVE
Length = 365
Score = 57.0 bits (136), Expect = 1e-06
Identities = 43/137 (31%), Positives = 66/137 (48%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K HAKWSP T T+ P+I + E + + E K++ P VFDI+ +V +
Sbjct: 222 KIHAKWSPVCTATYRLMPDIILKEPIEGA----EAKKFKLVCPMGVFDIEDGA--AVVKN 275
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLD 203
P A + + I+ G V + +D FIFTVES G + A Q+ A +++ K
Sbjct: 276 PRACTTCRQCIEPGN--GFADKVSLGKLKDHFIFTVESVGQIPAPQIFAQAAVVMQNKCR 333
Query: 202 AVRLSEDTVEADDQFGE 152
V+ S +DQ G+
Sbjct: 334 LVKKS-----LEDQMGK 345
[88][TOP]
>UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FAR4_MAIZE
Length = 372
Score = 56.6 bits (135), Expect = 1e-06
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Frame = -1
Query: 556 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVLVV 386
HAKWSP AT + PE+ I ++ + + +E ++ VFDI+ + ++ +V
Sbjct: 253 HAKWSPVATAWYRMLPEVVI----LKEVEGPQAEELVNKCRVNVFDIEDLANGGKRAVVA 308
Query: 385 DPEAYSYDDEVIKKAEAMG-KPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
P A + E + MG VE+ +D FIFT+ESTG++ L A++IL++K
Sbjct: 309 RPRACTLCRECV-----MGPNEKQVELRRVRDHFIFTIESTGSMPPEVLFTEAVKILEEK 363
[89][TOP]
>UniRef100_A5DTC9 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5DTC9_LODEL
Length = 336
Score = 56.6 bits (135), Expect = 1e-06
Identities = 40/122 (32%), Positives = 63/122 (51%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP AT ++ P I I E + L+ + +K + P V I + V D
Sbjct: 217 DHAKFSPVATASYRLLPVIDIKEPITGDLARKFQKCF----PPGVIGIKD-DGEAYVEDA 271
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ ++D FIF VESTGA+ ++ +I +LK K +
Sbjct: 272 RKDTVSREVLRHPEFEGK---VKLGRQRDYFIFNVESTGAMPPCEIFLKSIRVLKSKAEY 328
Query: 199 VR 194
+R
Sbjct: 329 LR 330
[90][TOP]
>UniRef100_A5DPW5 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DPW5_PICGU
Length = 333
Score = 56.6 bits (135), Expect = 1e-06
Identities = 39/122 (31%), Positives = 61/122 (50%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP +T ++ +I I E + E K + P+ V I+ T V D
Sbjct: 215 DHAKFSPVSTASYRLMSDIKITEPITG----ESAKRFQKCFPSGVIGIENDT--AFVKDA 268
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ +D FIF VESTGA+ ++ ++ +LK K D
Sbjct: 269 RKDTVSREVLRHEEFNGK---VKLGRIRDHFIFNVESTGAMPPEEIFFKSVRVLKNKADY 325
Query: 199 VR 194
+R
Sbjct: 326 LR 327
[91][TOP]
>UniRef100_UPI00019261EE PREDICTED: similar to DNA-directed RNA polymerases I and III
subunit RPAC1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019261EE
Length = 354
Score = 55.8 bits (133), Expect = 2e-06
Identities = 40/123 (32%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAK+SP AT ++ PEI + + ++ L+ E + +V + + +T+ V V +
Sbjct: 229 KDHAKFSPVATASYRLLPEITLLKPVVGELA-ETLAKCFSKGVIKVIEENGITRAV-VDN 286
Query: 382 PEAYS-----YDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEIL 218
P S Y +E++KK +V++ +D FI++VESTGA+ L++ AI+IL
Sbjct: 287 PRKDSGMREIYRNEILKK--------IVKLEKVRDHFIYSVESTGALPPDVLVEEAIKIL 338
Query: 217 KQK 209
K
Sbjct: 339 HAK 341
[92][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 55.8 bits (133), Expect = 2e-06
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ---QVL 392
+DHAK+SP +T ++ P IHI +E + E+ ++ P V +++ +
Sbjct: 221 QDHAKFSPVSTASYRLLPAIHI----LEPIEGEDAIKFQKCFPAGVIELEDGPNGKPRAR 276
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V D + E ++ E K V++ +D F++++ESTG +K QL +I +LK
Sbjct: 277 VADVRKDTVSRECLRHPEFADK---VQLGRVRDYFLYSIESTGIIKPDQLFLKSIAVLKS 333
Query: 211 KLDAVRLS 188
K AV+ S
Sbjct: 334 KCMAVKAS 341
[93][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 55.8 bits (133), Expect = 2e-06
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVL 392
+DHAK+SP AT ++ P IHI + + E+ ++ P V +++ +Q
Sbjct: 221 QDHAKFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQAR 276
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V D + E ++ E K V++ +D ++F+VESTG +K L +I +LK
Sbjct: 277 VADVRKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKS 333
Query: 211 KLDAVRLSEDTVEAD 167
K AV+ S + +D
Sbjct: 334 KCLAVKSSLQNISSD 348
[94][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 55.5 bits (132), Expect = 3e-06
Identities = 33/123 (26%), Positives = 63/123 (51%)
Frame = -1
Query: 556 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDPE 377
HAKWSP T ++ PE + + ++ + P +VFDI+ VT + +P
Sbjct: 222 HAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTV--CPMKVFDIEDVTGNAVPTNPR 279
Query: 376 AYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 197
+ I+K P +++ + FIF++E+TG + +L++ AI+IL++K + +
Sbjct: 280 NCTTCRACIEKF-----PNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKKGEKI 334
Query: 196 RLS 188
+ S
Sbjct: 335 KSS 337
[95][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 55.5 bits (132), Expect = 3e-06
Identities = 33/123 (26%), Positives = 63/123 (51%)
Frame = -1
Query: 556 HAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDPE 377
HAKWSP T ++ PE + + ++ + P +VFDI+ VT + +P
Sbjct: 222 HAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTV--CPMKVFDIEDVTGNAVPTNPR 279
Query: 376 AYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDAV 197
+ I+K P +++ + FIF++E+TG + +L++ AI+IL++K + +
Sbjct: 280 NCTTCRACIEKF-----PNKIKLLKDKFHFIFSIETTGCIPPVELVKTAIDILRKKGEKI 334
Query: 196 RLS 188
+ S
Sbjct: 335 KSS 337
[96][TOP]
>UniRef100_B6GYD0 Pc12g12250 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GYD0_PENCW
Length = 374
Score = 55.5 bits (132), Expect = 3e-06
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT-------- 404
DHAK+SP AT ++ P+I I ++ ++ K++ P V ++PVT
Sbjct: 235 DHAKFSPVATASYRLLPDIKIERPIIG----DDAKKFAKCFPKGVIGLEPVTSEEAAQPG 290
Query: 403 ---------QQVLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
Q+ +V D + E ++ E GK V++ +D FIF VESTG ++
Sbjct: 291 SGYEGHAGEQKAVVKDAFNDTVSRECLRHEEFQGK---VKLGRVRDHFIFNVESTGQFES 347
Query: 250 SQLLQNAIEILKQK 209
L AI+++K K
Sbjct: 348 DMLFLEAIKVMKLK 361
[97][TOP]
>UniRef100_A8N510 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N510_COPC7
Length = 356
Score = 55.5 bits (132), Expect = 3e-06
Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
KDHAK++P AT ++ P I I + + E +++ V +DP T+QV V +
Sbjct: 216 KDHAKFTPVATASYRLLPHIKIKKPIPP----EHAEKFAKCFSPGVIKVDPQTKQVSVDE 271
Query: 382 PEAY--SYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
+ EV + E VE++ +D F+F VES G +LL AI+++++K
Sbjct: 272 HNVRKDTVTREVFRHPEFADS---VELSRVRDYFLFNVESEGPYAPERLLPEAIKVMREK 328
Query: 208 LDAVRLSEDTVEADDQFG 155
+ ++ + + + +DQ G
Sbjct: 329 IATIKAAAEAL-LNDQNG 345
[98][TOP]
>UniRef100_A3GGP5 RNA polymerase III (C) subunit n=1 Tax=Pichia stipitis
RepID=A3GGP5_PICST
Length = 336
Score = 55.5 bits (132), Expect = 3e-06
Identities = 38/122 (31%), Positives = 65/122 (53%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP +T ++ P I I E + ++ +K + P+ V I+ + V D
Sbjct: 217 DHAKFSPVSTASYRLMPVIDIVEPIRGDSAVRFQKCF----PSGVIGIN-ADGEAYVKDA 271
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E GK V++ K+D FIF VESTGA+ ++ ++ +LK K++
Sbjct: 272 RKDTVSREVLRHEEFDGK---VKLGRKRDHFIFNVESTGAMAPEEIFFKSLLVLKNKVEY 328
Query: 199 VR 194
+R
Sbjct: 329 LR 330
[99][TOP]
>UniRef100_B6Q738 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Penicillium marneffei ATCC 18224 RepID=B6Q738_PENMQ
Length = 373
Score = 55.1 bits (131), Expect = 4e-06
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 17/143 (11%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT-------- 404
DHAK+SP AT T+ PEI I M + E+ +++ P V + +T
Sbjct: 234 DHAKFSPVATATYRLLPEIRI----MRPIIGEDARKFAKCFPKGVIGFEKITPAEAAQKG 289
Query: 403 ---------QQVLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
+ +VVDP + E ++ E K V++ +D FIF VESTG +
Sbjct: 290 SGYEGHAGEDKAVVVDPFKDTVSRECLRHDEFKDK---VKLGRVRDHFIFNVESTGQFPS 346
Query: 250 SQLLQNAIEILKQKLDAVRLSED 182
L ++++L KL VRL D
Sbjct: 347 DTLFLESVKVL--KLKCVRLKRD 367
[100][TOP]
>UniRef100_B3LK74 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=3
Tax=Saccharomyces cerevisiae RepID=B3LK74_YEAS1
Length = 335
Score = 55.1 bits (131), Expect = 4e-06
Identities = 34/122 (27%), Positives = 63/122 (51%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP +T ++ P+I+I ++ + E + + P V ID + + V D
Sbjct: 215 DHAKFSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDA 270
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E K V++ ++ FIF VES+GA+ ++ ++ ILK K +
Sbjct: 271 RKDTVSREVLRYEEFADK---VKLGRVRNHFIFNVESSGAMTPEEIFFKSVRILKNKAEY 327
Query: 199 VR 194
++
Sbjct: 328 LK 329
[101][TOP]
>UniRef100_A1C7I5 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Aspergillus clavatus RepID=A1C7I5_ASPCL
Length = 374
Score = 55.1 bits (131), Expect = 4e-06
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ------- 401
DHAK+SP AT ++ P+I I ++ ++ K++ P V +++PVT
Sbjct: 235 DHAKFSPVATASYRLMPDIKILRPIIG----DDAKKFAKCFPKGVIELEPVTSTEAAQKG 290
Query: 400 ----------QVLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
+ +V DP + E ++ E GK V++ +D FIF VESTG ++
Sbjct: 291 SEYEGHAGELKAVVRDPFNDTVSRECLRHEEFQGK---VKLGRIRDHFIFNVESTGQFES 347
Query: 250 SQLLQNAIEILKQK 209
L ++++LK K
Sbjct: 348 DYLFLESVKVLKLK 361
[102][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 54.7 bits (130), Expect = 5e-06
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT---QQVL 392
+DHAK+SP AT ++ P IHI + + E+ ++ P V +++ +Q
Sbjct: 220 QDHAKFSPVATASYRLLPTIHI----LSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQAR 275
Query: 391 VVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQ 212
V D + E ++ E K V++ +D ++F+VESTG +K L +I +LK
Sbjct: 276 VADVRKDTVSRECLRHPEFADK---VQLGRVRDHYLFSVESTGIMKPDVLFIKSIAVLKS 332
Query: 211 KLDAVRLSEDTVEAD 167
K AV+ S + +D
Sbjct: 333 KCLAVKSSLQNIFSD 347
[103][TOP]
>UniRef100_A2QD13 Complex: RCP40 of S. cerevisiae associates with RCP19 of S.
cerevisiae n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QD13_ASPNC
Length = 359
Score = 54.7 bits (130), Expect = 5e-06
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQ---QVLV 389
DHAK+SP AT T+ P+I I ++ ++ K++ P+ V ++ + + +V
Sbjct: 234 DHAKFSPVATATYRLLPDIKILRPIIG----DDAKKFAKCFPSGVIGLEKGHEGELKAVV 289
Query: 388 VDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQK 209
VDP + E ++ E GK V++ +D FIF +ES G ++ L ++++LK K
Sbjct: 290 VDPFKDTVSRECLRHEEFQGK---VKLGRVRDHFIFNIESVGQFESDTLFLESVKVLKLK 346
[104][TOP]
>UniRef100_P07703 DNA-directed RNA polymerases I and III subunit RPAC1 n=3
Tax=Saccharomyces cerevisiae RepID=RPAC1_YEAST
Length = 335
Score = 54.7 bits (130), Expect = 5e-06
Identities = 34/122 (27%), Positives = 62/122 (50%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP +T ++ P+I+I ++ + E + + P V ID + + V D
Sbjct: 215 DHAKFSPVSTASYRLLPQINI----LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDA 270
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E K V++ ++ FIF VES GA+ ++ ++ ILK K +
Sbjct: 271 RKDTVSREVLRYEEFADK---VKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEY 327
Query: 199 VR 194
++
Sbjct: 328 LK 329
[105][TOP]
>UniRef100_A7TPZ5 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TPZ5_VANPO
Length = 320
Score = 54.3 bits (129), Expect = 6e-06
Identities = 36/124 (29%), Positives = 63/124 (50%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVDP 380
DHAK+SP T ++ P+I I E + E K + P V DI+ + V D
Sbjct: 201 DHAKFSPVCTASYRLMPKIIITEKIKG----ESAKRFQKCFPPGVIDINE-NDEAYVKDA 255
Query: 379 EAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKLDA 200
+ EV++ E K V+++ ++ FIF +E+ GA+ A ++ +++ILK K +
Sbjct: 256 RKDTMTREVLRHEEFQDK---VKLDRVRNHFIFNIETVGAMSAEEIFLKSVKILKNKAEY 312
Query: 199 VRLS 188
++ S
Sbjct: 313 LKNS 316
[106][TOP]
>UniRef100_A8PAX3 DNA-directed RNA polymerase II 33 kDa polypeptide, putative n=1
Tax=Brugia malayi RepID=A8PAX3_BRUMA
Length = 275
Score = 53.9 bits (128), Expect = 8e-06
Identities = 36/119 (30%), Positives = 55/119 (46%)
Frame = -1
Query: 562 KDHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVTQQVLVVD 383
K+HAKW+P V F Y+P+ + + L + +EW S +++
Sbjct: 171 KEHAKWNPTCCVAFEYDPD-----NALRHTMLAKPEEWPKSEYSQL-------------- 211
Query: 382 PEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKASQLLQNAIEILKQKL 206
DDE + M KP + F FTVESTGA+KA ++ + I +LK+KL
Sbjct: 212 -----EDDEYEAPFDPMAKP---------NKFWFTVESTGALKAENIILSGISVLKKKL 256
[107][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 53.9 bits (128), Expect = 8e-06
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 17/149 (11%)
Frame = -1
Query: 559 DHAKWSPAATVTFMYEPEIHINEDLMESLSLEEKKEWIDSSPTRVFDIDPVT-------- 404
DHAK+SP AT ++ P+I I ++ + +L+ + + P V ID V+
Sbjct: 236 DHAKFSPVATASYRLLPDIKIIRPILGNDALKFARCF----PKGVIGIDSVSAEEASRPG 291
Query: 403 ---------QQVLVVDPEAYSYDDEVIKKAEAMGKPGLVEINAKQDSFIFTVESTGAVKA 251
++V+VVDP + E ++ E GK V++ +D FIF VESTG ++
Sbjct: 292 SGYEGHEGEKKVVVVDPFKDTMSRECLRHDEFQGK---VKLGRIRDHFIFNVESTGQFRS 348
Query: 250 SQLLQNAIEILKQKLDAVRLSEDTVEADD 164
L ++++L KL RL D + D
Sbjct: 349 DVLFIESVKVL--KLKCRRLKRDLAKLAD 375