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[1][TOP]
>UniRef100_UPI0001984805 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001984805
Length = 426
Score = 202 bits (514), Expect = 1e-50
Identities = 104/161 (64%), Positives = 131/161 (81%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LPG MVAKI+EA VL +RLRR PTYDE+AE ++VNVSTV LVSERSR PIS+D+ V
Sbjct: 266 LPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAV 325
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
T G +T +EIIPGP E TP+KMV++QL+KQ V + LN L +RE I+RLYFG++G+TPL
Sbjct: 326 TSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPL 385
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
SFEEIG+++KLSRER+RQI IALSKL+QT+ VD LK Y++
Sbjct: 386 SFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 426
[2][TOP]
>UniRef100_A7Q231 Chromosome chr13 scaffold_45, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q231_VITVI
Length = 352
Score = 202 bits (514), Expect = 1e-50
Identities = 104/161 (64%), Positives = 131/161 (81%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LPG MVAKI+EA VL +RLRR PTYDE+AE ++VNVSTV LVSERSR PIS+D+ V
Sbjct: 192 LPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEFIDVNVSTVRLVSERSRTPISVDQAV 251
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
T G +T +EIIPGP E TP+KMV++QL+KQ V + LN L +RE I+RLYFG++G+TPL
Sbjct: 252 TSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVERALNTLCEREAYILRLYFGINGETPL 311
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
SFEEIG+++KLSRER+RQI IALSKL+QT+ VD LK Y++
Sbjct: 312 SFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDYLKLYMM 352
[3][TOP]
>UniRef100_Q9ZSL6 Sigma-like factor n=1 Tax=Arabidopsis thaliana RepID=Q9ZSL6_ARATH
Length = 419
Score = 172 bits (435), Expect = 2e-41
Identities = 84/159 (52%), Positives = 118/159 (74%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LPG + + AK++EA+NVL ++LRR+P+ +E+AE LN+NVS V L ERSR P+SLD+
Sbjct: 256 LPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVA 315
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G +T +EI+ GP E PE+MV+++ +K + +LL L RE +++ LYFGL+G+TP+
Sbjct: 316 SQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPM 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
SFEEIGK LKLSRER+RQI GIAL KL+ V+ LK Y
Sbjct: 376 SFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414
[4][TOP]
>UniRef100_B9RVK0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9RVK0_RICCO
Length = 389
Score = 134 bits (338), Expect = 4e-30
Identities = 71/134 (52%), Positives = 93/134 (69%)
Frame = -3
Query: 566 PGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVT 387
P + KI+EA L +RL R P+Y E+A+ LNV+VSTV LV RSR +SLD+ V+
Sbjct: 254 PRSLWDRTTKIAEAKISLTERLGRLPSYREIAKELNVHVSTVRLVFSRSRSTVSLDQAVS 313
Query: 386 DYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLS 207
D G +T +EIIPGP EM PE MV+KQL+K+ + +L+ L KRE +RL FGL+G TP S
Sbjct: 314 DQGGMTLQEIIPGPEEMMPENMVKKQLLKKELEELIQTLGKREAHTLRLIFGLNGQTPQS 373
Query: 206 FEEIGKVLKLSRER 165
+EIG+ LKL RER
Sbjct: 374 CDEIGRSLKLCRER 387
[5][TOP]
>UniRef100_C1ZU97 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodothermus
marinus DSM 4252 RepID=C1ZU97_RHOMR
Length = 279
Score = 98.2 bits (243), Expect = 4e-19
Identities = 52/160 (32%), Positives = 97/160 (60%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G ++KI + + L + R P+ +ELAE LN++V + + + + +S+D
Sbjct: 119 LPLNRIGTISKIRKVSARLAQEHERAPSAEELAEELNIDVEKIREALQHTGRALSMDAPF 178
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
TD + + +++P + +P++ + ++ +K + + L+ L+ RE +I+RLYFG+ + PL
Sbjct: 179 TDDDDNSLLDVLPNEEDTSPDEGLMEESLKIDIERALSTLHPREAEIIRLYFGIGREHPL 238
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI AL KL+Q + L+ +V
Sbjct: 239 TLEEIGQRFGLTRERVRQIKEKALRKLRQKHRREELQIHV 278
[6][TOP]
>UniRef100_C0UV59 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0UV59_9BACT
Length = 338
Score = 97.4 bits (241), Expect = 7e-19
Identities = 51/147 (34%), Positives = 91/147 (61%)
Frame = -3
Query: 530 EANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEIIP 351
+A+ L + L R+PT +ELAE + +N V L+ SR P+SL+ V G+ + + IP
Sbjct: 191 KASRKLSQELGREPTCEELAEYMGMNPEKVRLIMRASRHPLSLEGPVGTDGDSSLGQFIP 250
Query: 350 GPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLKLSR 171
TP + +++K+ ++K+LN L ++E K++ L +GL+G +P + EE+G L ++R
Sbjct: 251 DSTTETPVDLAIGEVLKRELSKVLNSLTEKERKVMVLRYGLEGSSPHTLEEVGHRLGVTR 310
Query: 170 ERIRQIYGIALSKLQQTTFVDSLKFYV 90
ER+RQI AL KL++ ++ L+ ++
Sbjct: 311 ERVRQIEAKALEKLRKPGKLNHLRDFL 337
[7][TOP]
>UniRef100_B5JCN6 RNA polymerase sigma factor n=1 Tax=Verrucomicrobiae bacterium
DG1235 RepID=B5JCN6_9BACT
Length = 377
Score = 97.1 bits (240), Expect = 9e-19
Identities = 54/150 (36%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++++ + +L + L R+PT ELAE+L + V+ V+ + S +P SL+ V
Sbjct: 190 LPVHLVDKISRMRKMALMLTEELGREPTDQELAEMLEMPVNKVSHLKSVSVRPTSLNAPV 249
Query: 389 TDYGNLT-FKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
+ GN T F EI+ TP + + ++ ++ + ++++ L RE +I+RL FGL+GD+P
Sbjct: 250 GEDGNSTEFGEIVGDDNAPTPYENLHEKSLRGDLHEMIDGLEDREAEIIRLRFGLNGDSP 309
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
L+ EE+G+V ++RER+RQ+ IALSK+++
Sbjct: 310 LTLEEVGQVFDITRERVRQLQNIALSKMRK 339
[8][TOP]
>UniRef100_Q2S172 RNA polymerase sigma-70 factor n=1 Tax=Salinibacter ruber DSM 13855
RepID=Q2S172_SALRD
Length = 313
Score = 95.9 bits (237), Expect = 2e-18
Identities = 52/149 (34%), Positives = 90/149 (60%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G ++KI +A+ L++ L RKP +ELAE L ++V V + + + +S+D
Sbjct: 153 LPLNRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMKHTSRHLSMDAPF 212
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + +++P +P++ + + +K + + L+ L+ RE +I RLYFG+ + PL
Sbjct: 213 NEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSALHDREAEITRLYFGIGREHPL 272
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
+ EEIGK L+RER+RQI AL KL+Q
Sbjct: 273 TLEEIGKRFDLTRERVRQIKEKALRKLRQ 301
[9][TOP]
>UniRef100_A9RXT3 Plastid sigma facor SIG2 n=2 Tax=Physcomitrella patens
RepID=A9RXT3_PHYPA
Length = 579
Score = 95.5 bits (236), Expect = 2e-18
Identities = 52/160 (32%), Positives = 96/160 (60%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++++I++A +L + R+ +E+AE++ + V + V + ++ P S+++ +
Sbjct: 413 LPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVGLTVEKLKSVVKSAKAPGSMERPI 472
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
G+ T E++ +PE + KQL++Q + +L LN RE +++RL FGLD
Sbjct: 473 GKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVLRTLNPREREVLRLRFGLDDGRSK 532
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ K++RERIRQI A+ KL+Q + L+ Y+
Sbjct: 533 TLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSILREYL 572
[10][TOP]
>UniRef100_Q7UQG1 Transcription initiation factor sigma 70 n=1 Tax=Rhodopirellula
baltica RepID=Q7UQG1_RHOBA
Length = 567
Score = 95.1 bits (235), Expect = 3e-18
Identities = 49/160 (30%), Positives = 91/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P +++K+ +A L + LRR+PTY+++AE +V + V V + R P+SLD+ V
Sbjct: 404 IPVHMIDVLSKLRQAQKRLTQTLRREPTYEDIAEATDVPIEEVRRVMDIGRHPVSLDRPV 463
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +F E + P ++ +++ + +LL L RE +I+RL +GL
Sbjct: 464 GEGEDSSFGEFVQDSETDNPVRIAASGMLRNKIDELLKTLTFREREIIRLRYGLVDGYSY 523
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE G++ K++RER+RQI A++K+Q + + L Y+
Sbjct: 524 TLEECGRIFKVTRERVRQIEAKAVAKMQSPSRAERLSSYL 563
[11][TOP]
>UniRef100_A3ZZZ4 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZZZ4_9PLAN
Length = 567
Score = 95.1 bits (235), Expect = 3e-18
Identities = 49/148 (33%), Positives = 84/148 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P +++K+ L + LRR+PT DE+A +++ V V + RQP+SLD+ +
Sbjct: 402 IPVHMIDVLSKLRNVQKRLLQELRREPTMDEIARRAEIDLEEVRRVMDIGRQPVSLDRPI 461
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +F E I E TP + Q+++ + LL L RE +I++L +GL
Sbjct: 462 GESEDSSFGEFIEDSHEETPIRSASNQILRDRIQGLLKTLTYREREIIKLRYGLGDGYTY 521
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ EE+G++ K++RER+RQI A+ KLQ
Sbjct: 522 TLEEVGRIFKVTRERVRQIEAKAVRKLQ 549
[12][TOP]
>UniRef100_P74565 RNA polymerase sigma factor rpoD n=1 Tax=Synechocystis sp. PCC 6803
RepID=RPOD_SYNY3
Length = 425
Score = 95.1 bits (235), Expect = 3e-18
Identities = 52/160 (32%), Positives = 91/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 266 LPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKLRFIAKSAQLPISLETPI 325
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 326 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 384
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 385 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424
[13][TOP]
>UniRef100_C2AFG3 RNA polymerase sigma factor n=1 Tax=Thermomonospora curvata DSM
43183 RepID=C2AFG3_THECU
Length = 444
Score = 94.7 bits (234), Expect = 4e-18
Identities = 59/161 (36%), Positives = 92/161 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP M++K+S + +RL R+PT +ELA L+ + + V + SRQPISLD T+
Sbjct: 284 LPVHVLEMLSKLSRVERDMHQRLGREPTPEELAAELDKSPAQVRELLRTSRQPISLDSTI 343
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G ++I +MV++QL+ + + L+ L+ REE I+ + FGL TP
Sbjct: 344 GEDGETRIGDLIEDIDSPEASEMVDRQLMADQLRRSLSILSPREEMIMSMRFGLYDGTPR 403
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIGK L L+RERIRQ+ +LSKL+ + L + V
Sbjct: 404 TLDEIGKHLGLTRERIRQLEKESLSKLRHPSNATPLLDFAV 444
[14][TOP]
>UniRef100_Q59965 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7002
RepID=Q59965_SYNP2
Length = 375
Score = 94.4 bits (233), Expect = 6e-18
Identities = 52/160 (32%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + L RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 216 LPVHLYETISRIKKTTKILSQELGRKPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPI 275
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 276 GKEEDSRLGDFIEADGE-TPEDQVSKSLLREDLENVLDTLSARERDVLRLRYGLDDGRMK 334
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 335 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 374
[15][TOP]
>UniRef100_A9WGX1 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WGX1_CHLAA
Length = 313
Score = 94.4 bits (233), Expect = 6e-18
Identities = 52/152 (34%), Positives = 88/152 (57%)
Frame = -3
Query: 545 VAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTF 366
++++S L ++L R+PT +ELA+ ++V V + P SLD+ T+ G
Sbjct: 159 LSRLSRLRQELSQQLDREPTLEELAQAAGLSVEQVERAEQAGLAPTSLDEPHTEDGGGAL 218
Query: 365 KEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKV 186
EI+ P++ TP V + +++ V L +L+ RE I+RL +GLDG+ + E+IG+
Sbjct: 219 AEILTDPLQPTPFDEVSESMLQADVQHALQQLSPRERSILRLRYGLDGEPMHTLEQIGQR 278
Query: 185 LKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
L+L+RER+RQ+ AL KL+ + L+ YV
Sbjct: 279 LRLTRERVRQLEHEALRKLRDPSLHPQLQGYV 310
[16][TOP]
>UniRef100_B8G577 RNA polymerase sigma factor n=1 Tax=Chloroflexus aggregans DSM 9485
RepID=B8G577_CHLAD
Length = 314
Score = 94.0 bits (232), Expect = 7e-18
Identities = 54/158 (34%), Positives = 91/158 (57%)
Frame = -3
Query: 563 GEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTD 384
GE+ +A++ + L ++L R+PT +ELA ++V V + P SLD+ T+
Sbjct: 156 GERLSRLARLRQE---LAQQLDREPTLEELANAAGLSVEQVERAEQAGLAPTSLDEAHTE 212
Query: 383 YGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSF 204
G EI+ P++ TP V + +++ V L++L+ RE I+RL +GLDG+ +
Sbjct: 213 DGGGALSEILTDPLQPTPFDEVSEGMLQADVQAALSQLSPRERNILRLRYGLDGEPMHTL 272
Query: 203 EEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
E+IG+ L+L+RER+RQ+ AL KL+ + L+ YV
Sbjct: 273 EQIGQRLRLTRERVRQLEYEALRKLRDPSLYPQLQGYV 310
[17][TOP]
>UniRef100_B0VJJ6 RNA polymerase sigma factor n=1 Tax=Candidatus Cloacamonas
acidaminovorans RepID=B0VJJ6_9BACT
Length = 579
Score = 94.0 bits (232), Expect = 7e-18
Identities = 50/149 (33%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + KI+ + L ++L R+P +E++EVL++ V + + S++P+SLDK +
Sbjct: 413 IPVHMIESINKINRTSRRLMQKLGREPYPEEISEVLDIPVEKIKNIMSISKEPVSLDKPI 472
Query: 389 T-DYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
D + + I ++PE++ E+ L+K+ V ++L L REE+++RL FG+D
Sbjct: 473 GHDSEDSILGDFIEDRTIISPERLAERSLLKKQVDEVLKTLTPREERVIRLRFGIDDGYH 532
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ EE+G + +++RERIRQI AL KL+
Sbjct: 533 RTLEEVGNIFQVTRERIRQIEDKALKKLR 561
[18][TOP]
>UniRef100_Q9SMV8 Putative sigma-like transcription factor (Fragment) n=1
Tax=Arabidopsis thaliana RepID=Q9SMV8_ARATH
Length = 487
Score = 94.0 bits (232), Expect = 7e-18
Identities = 54/159 (33%), Positives = 87/159 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++ K+SEA + +P+ +ELA + V+ + + +R P+S+ + +
Sbjct: 324 LPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPI 383
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ TF+EI P TP V KQL++ V LLN L+ +E +I++L FG+DG
Sbjct: 384 WSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQR 443
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
S EIG++ LS+ER+RQ+ AL +L+Q L Y
Sbjct: 444 SLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 482
[19][TOP]
>UniRef100_Q9LD95 Sigma factor-like protein n=1 Tax=Arabidopsis thaliana
RepID=Q9LD95_ARATH
Length = 547
Score = 94.0 bits (232), Expect = 7e-18
Identities = 54/159 (33%), Positives = 87/159 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++ K+SEA + +P+ +ELA + V+ + + +R P+S+ + +
Sbjct: 384 LPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPI 443
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ TF+EI P TP V KQL++ V LLN L+ +E +I++L FG+DG
Sbjct: 444 WSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQR 503
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
S EIG++ LS+ER+RQ+ AL +L+Q L Y
Sbjct: 504 SLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
[20][TOP]
>UniRef100_C1MUC7 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MUC7_9CHLO
Length = 587
Score = 94.0 bits (232), Expect = 7e-18
Identities = 53/160 (33%), Positives = 91/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + +++++S+ L + R PT +E+AEV+++ V + + + S PISL ++V
Sbjct: 410 LPVHLFEIISRMSKVERQLVMKYGRDPTTEEIAEVMDMTVEKINQIQKASLVPISLSQSV 469
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + T +E + P+ K L+K+ + +LN L+ RE ++RL +G+D
Sbjct: 470 NDDDSRTVEETLVDDHAEHPDDATGKVLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVK 529
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG V ++RERIRQI AL KL+Q + L+ Y+
Sbjct: 530 TLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGILREYL 569
[21][TOP]
>UniRef100_B9S0J0 RNA polymerase sigma factor rpoD, putative n=1 Tax=Ricinus communis
RepID=B9S0J0_RICCO
Length = 548
Score = 94.0 bits (232), Expect = 7e-18
Identities = 58/159 (36%), Positives = 83/159 (52%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y + K+SEA PT +ELA+ + + + + +R P+S+ +TV
Sbjct: 385 LPENVYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTV 444
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
TF+EI PE V KQL+++ V LLN LN RE KI+RL +G++
Sbjct: 445 WADQETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKK 504
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
S EIG V LS+ER+RQ+ AL KL+Q L+ Y
Sbjct: 505 SLSEIGSVFGLSKERVRQLESRALYKLKQCLASHGLEAY 543
[22][TOP]
>UniRef100_B0JGK3 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa NIES-843
RepID=B0JGK3_MICAN
Length = 416
Score = 93.6 bits (231), Expect = 9e-18
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 257 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPI 316
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 317 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 376 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[23][TOP]
>UniRef100_B1PVV9 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7820
RepID=B1PVV9_MICAE
Length = 416
Score = 93.6 bits (231), Expect = 9e-18
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 257 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPI 316
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 317 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 376 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[24][TOP]
>UniRef100_A8YBI5 RNA polymerase sigma factor n=1 Tax=Microcystis aeruginosa PCC 7806
RepID=A8YBI5_MICAE
Length = 416
Score = 93.6 bits (231), Expect = 9e-18
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 257 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPI 316
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 317 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 376 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[25][TOP]
>UniRef100_A1ZP06 RpoD n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZP06_9SPHI
Length = 287
Score = 93.6 bits (231), Expect = 9e-18
Identities = 52/160 (32%), Positives = 93/160 (58%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G + KIS+ + L ++ R+P+ DELAEVL+V S V + S + +S+D
Sbjct: 127 LPLNRVGSLNKISKTFSELEQKYEREPSPDELAEVLDVTTSEVVDTLKISGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ +++ E+ P+ + +++ V + L+ L +RE ++ LYFGL+G+ +
Sbjct: 187 VQGEENSLLDVLENESEVKPDSELMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHAM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T+ +LK Y+
Sbjct: 247 TLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
[26][TOP]
>UniRef100_P52322 RNA polymerase sigma factor rpoD1 n=1 Tax=Microcystis aeruginosa
RepID=RPOD_MICAE
Length = 416
Score = 93.6 bits (231), Expect = 9e-18
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 257 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPI 316
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 317 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 376 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[27][TOP]
>UniRef100_B7KDV7 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7424
RepID=B7KDV7_CYAP7
Length = 376
Score = 93.2 bits (230), Expect = 1e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 217 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 276
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 277 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 335
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 336 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 375
[28][TOP]
>UniRef100_B4W0Y8 RNA polymerase sigma factor n=1 Tax=Microcoleus chthonoplastes PCC
7420 RepID=B4W0Y8_9CYAN
Length = 380
Score = 93.2 bits (230), Expect = 1e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + L RKPT +E+A+ + + + + +++ ++ PISL+ +
Sbjct: 221 LPVHLYETISRIKKTTKILSQELGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPI 280
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 281 GKEEDSRLGDFIEADGE-TPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMK 339
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 340 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379
[29][TOP]
>UniRef100_B4AUJ5 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7822
RepID=B4AUJ5_9CHRO
Length = 377
Score = 93.2 bits (230), Expect = 1e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 218 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 277
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 278 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 336
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 337 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 376
[30][TOP]
>UniRef100_B0AB34 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AB34_9CLOT
Length = 294
Score = 93.2 bits (230), Expect = 1e-17
Identities = 55/152 (36%), Positives = 94/152 (61%), Gaps = 3/152 (1%)
Frame = -3
Query: 539 KISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKE 360
K E +NVL+ R+P+ +ELA++ +++V V + +R + +SLD + + + + E
Sbjct: 147 KKQELSNVLQ----REPSLEELADICDMDVDKVIEILKRDKNVVSLDTPIKEDEDSSLVE 202
Query: 359 IIPGPVEMTPEKM--VEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKV 186
IP + M VE+ +K+ + +LL L+++E+K++R+ FGLD D P + EEIGKV
Sbjct: 203 FIPSDANFSDVVMHEVEQHNLKEKINELLTGLSEQEQKVLRMRFGLDDDDPKTLEEIGKV 262
Query: 185 LKLSRERIRQIYGIALSKLQQTTFVDSLK-FY 93
++RERIRQI A+ KL+ + ++ LK FY
Sbjct: 263 FGVTRERIRQIEAKAIRKLRHPSRLNQLKNFY 294
[31][TOP]
>UniRef100_Q9L4T2 RNA polymerase sigma factor n=1 Tax=Nostoc punctiforme PCC 73102
RepID=Q9L4T2_NOSP7
Length = 389
Score = 92.8 bits (229), Expect = 2e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 230 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 289
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + K+L+ L+ RE ++RL +GLD
Sbjct: 290 GKEEDSRLGDFIESDGE-TPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMK 348
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 349 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
[32][TOP]
>UniRef100_C0V205 RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC
BAA-798 RepID=C0V205_9BACT
Length = 326
Score = 92.8 bits (229), Expect = 2e-17
Identities = 53/148 (35%), Positives = 90/148 (60%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ I++ ++ L + L R+PT +E+A LN+ V V + S+ P+SL++
Sbjct: 168 LPVHVTELMHNITKVSHRLSQELGREPTSEEIAAELNITPERVREVVKASQYPMSLEQPY 227
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G+ T +EII P +P V + ++++ + LL+ L RE +++ L +GL G+
Sbjct: 228 GEDGDGTVEEIIEDPNIESPADQVSRDILREQILALLDDLTDRERQVLDLRYGLTGNHSY 287
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ EE+GKVL ++RERIRQI ALSKL+
Sbjct: 288 TLEEVGKVLGVTRERIRQIEKEALSKLR 315
[33][TOP]
>UniRef100_A0ZJC3 RNA polymerase sigma factor n=1 Tax=Nodularia spumigena CCY9414
RepID=A0ZJC3_NODSP
Length = 391
Score = 92.8 bits (229), Expect = 2e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 232 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 291
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + K+L+ L+ RE ++RL +GLD
Sbjct: 292 GKEEDSRLGDFIESDGE-TPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMK 350
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 351 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
[34][TOP]
>UniRef100_P26683 RNA polymerase sigma factor rpoD n=2 Tax=Nostocaceae
RepID=RPOD_ANASP
Length = 390
Score = 92.8 bits (229), Expect = 2e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 231 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 290
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + K+L+ L+ RE ++RL +GLD
Sbjct: 291 GKEEDSRLGDFIESDGE-TPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMK 349
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 350 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
[35][TOP]
>UniRef100_Q11U62 RNA polymerase sigma-70 factor n=1 Tax=Cytophaga hutchinsonii ATCC
33406 RepID=Q11U62_CYTH3
Length = 287
Score = 92.4 bits (228), Expect = 2e-17
Identities = 51/160 (31%), Positives = 92/160 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G + KIS+ + L ++ R+P+ DELAEVL V+ + V + S + +S+D
Sbjct: 127 LPLNRVGSLNKISKTFSELEQKYEREPSPDELAEVLEVSTAEVVDTLKISGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ +++ E P+ + +++ V + L+ L +RE ++ LYFGL+G+ +
Sbjct: 187 VQGEENSLLDVLENSSESAPDSSLMNDSLRREVQRALSTLTQREADVISLYFGLNGEHSM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T+ +LK Y+
Sbjct: 247 TLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
[36][TOP]
>UniRef100_Q10UV2 RNA polymerase sigma factor n=1 Tax=Trichodesmium erythraeum IMS101
RepID=Q10UV2_TRIEI
Length = 386
Score = 92.4 bits (228), Expect = 2e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 227 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATSMEMTIEKLRFIAKSAQLPISLETPI 286
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +LN L+ RE ++RL +GLD
Sbjct: 287 GKEEDSRLGDFIESDGE-TPEDEVSKNLLREDLESVLNSLSPRERDVLRLRYGLDDGRMK 345
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 346 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 385
[37][TOP]
>UniRef100_B1WS32 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. ATCC 51142
RepID=B1WS32_CYAA5
Length = 416
Score = 92.4 bits (228), Expect = 2e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 257 LPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 316
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 317 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 376 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[38][TOP]
>UniRef100_Q4C7J7 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 8501
RepID=Q4C7J7_CROWT
Length = 414
Score = 92.4 bits (228), Expect = 2e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 255 LPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 314
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 315 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 373
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 374 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 413
[39][TOP]
>UniRef100_A3ISY9 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. CCY0110
RepID=A3ISY9_9CHRO
Length = 416
Score = 92.4 bits (228), Expect = 2e-17
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 257 LPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 316
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 317 GKEEDSRLGDFIEADGE-TPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 375
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 376 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
[40][TOP]
>UniRef100_B9MTE1 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9MTE1_POPTR
Length = 535
Score = 92.4 bits (228), Expect = 2e-17
Identities = 54/159 (33%), Positives = 86/159 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP YG++ K+ EA + +PT +E+A + + + + + +R P+S+ +TV
Sbjct: 372 LPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTV 431
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
N TF+EI P+ V KQL+++ + LLN L+ +E +I+RL FG++
Sbjct: 432 WSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQK 491
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
S EIG V LS+ER+RQ+ AL KL+Q L Y
Sbjct: 492 SLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAY 530
[41][TOP]
>UniRef100_C6JRK5 Putative uncharacterized protein Sb0010s016080 n=1 Tax=Sorghum
bicolor RepID=C6JRK5_SORBI
Length = 238
Score = 92.0 bits (227), Expect = 3e-17
Identities = 54/161 (33%), Positives = 89/161 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ E LR++LRR+PT +E+A + + V + +SLD +
Sbjct: 74 LPAHMVEASYRVKECTKRLRRKLRRRPTNEEIALDTGMPIKRVEAAVNLPKYSVSLDSKI 133
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++E+ P T E+M+ + +K+ V K L+ L RE+++V L FGL+ D
Sbjct: 134 GST-DMTYQEVTADPSAETAEEMLNRMSMKKDVHKALDTLTTREKQVVVLRFGLEDDRIR 192
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG ++ +SRERIRQI A KL+ V +LK Y+V
Sbjct: 193 TLQEIGNIMGVSRERIRQIESGAFRKLRSKKRVKALKDYLV 233
[42][TOP]
>UniRef100_B8LQB0 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LQB0_PICSI
Length = 495
Score = 92.0 bits (227), Expect = 3e-17
Identities = 56/160 (35%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + +I A +L + +R PT +E+AEV ++++ + V+ SR P SLD+ V
Sbjct: 334 LPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCV 393
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ F EI+ + E +V K+L K+ + ++L+ L RE+++VRL +GLD
Sbjct: 394 GKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMK 453
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
S E+G+ LSRER+RQI A+ KL+Q LK Y+
Sbjct: 454 SLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 493
[43][TOP]
>UniRef100_B8LLW6 Putative uncharacterized protein n=1 Tax=Picea sitchensis
RepID=B8LLW6_PICSI
Length = 592
Score = 92.0 bits (227), Expect = 3e-17
Identities = 56/160 (35%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + +I A +L + +R PT +E+AEV ++++ + V+ SR P SLD+ V
Sbjct: 431 LPVHIVESMTRIRTAWRLLYQEHKRDPTKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCV 490
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ F EI+ + E +V K+L K+ + ++L+ L RE+++VRL +GLD
Sbjct: 491 GKDMDEKFSEIVADTNSESTETIVSKELFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMK 550
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
S E+G+ LSRER+RQI A+ KL+Q LK Y+
Sbjct: 551 SLHEVGENFSLSRERVRQIEMKAMRKLRQNHRTQHLKHYL 590
[44][TOP]
>UniRef100_C1A7K2 RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca T-27
RepID=C1A7K2_GEMAT
Length = 286
Score = 91.7 bits (226), Expect = 4e-17
Identities = 52/160 (32%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + G + +I + N L + L R+ T+ E+A +++ V S+ +SLD +
Sbjct: 126 VPLNRAGTLHRIGKRANALLQELGREATHAEIAHGMDITEEEVAKTMSISQVHLSLDAPL 185
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
T + + +P V TPE + + + + + L L +RE KI+RLYFG+DG P+
Sbjct: 186 TPGEDNRLLDYLPDTVHPTPEDQTFDKALTEAIEESLGGLKEREAKILRLYFGIDGADPM 245
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG L ++RER+RQI ALS+L+ + SL+ ++
Sbjct: 246 TLEEIGSQLGITRERVRQIKEKALSRLRHVSRSKSLESFL 285
[45][TOP]
>UniRef100_C1SKA7 RNA polymerase sigma factor n=1 Tax=Denitrovibrio acetiphilus DSM
12809 RepID=C1SKA7_9BACT
Length = 301
Score = 91.7 bits (226), Expect = 4e-17
Identities = 52/160 (32%), Positives = 98/160 (61%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ G++ KI+ A L K+L R+PT ELAE L ++ + + V SR +SL+ +
Sbjct: 142 LPIKQAGILYKINGATEKLNKKLNREPTASELAEQLEMDEADIENVLRVSRNYLSLEAPI 201
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + +F +++ + E ++ K L K + ++++L++RE +I+ FGL+ + P
Sbjct: 202 KDGEDRSFIDLLESGTKDIEEDIISKTL-KTALDDIVDELDERESQIIEWRFGLNEEAPK 260
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+++ +SRER+RQ+ ALSKL++ + L+ ++
Sbjct: 261 TLEEIGELMDISRERVRQLETRALSKLRKKAMKNKLQDFL 300
[46][TOP]
>UniRef100_UPI0001BB60BF RNA polymerase sigma-70 factor n=1 Tax=Blattabacterium sp.
(Blattella germanica) str. Bge RepID=UPI0001BB60BF
Length = 287
Score = 91.3 bits (225), Expect = 5e-17
Identities = 47/159 (29%), Positives = 94/159 (59%)
Frame = -3
Query: 566 PGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVT 387
P K ++ KI + L + L+R P+ E+AE L++N V + S + +S+D +
Sbjct: 128 PTNKLALLNKILKTLAQLEQELQRTPSAREIAEYLDMNEKDVEESIKNSGRHVSMDAPLI 187
Query: 386 DYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLS 207
+ + +++ P++ +EK+ +++ + ++L L++RE +++ L+FGL+G P++
Sbjct: 188 EGEDSNLYDLVRSDESPRPDEHLEKESLRKDIKRILETLSERERRVIILHFGLNGSPPMT 247
Query: 206 FEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
EE+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 248 LEEVGQSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
[47][TOP]
>UniRef100_Q7NHG5 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7NHG5_GLOVI
Length = 400
Score = 91.3 bits (225), Expect = 5e-17
Identities = 52/160 (32%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + L RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 241 LPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 300
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +LN L+ RE ++RL +GLD
Sbjct: 301 GKEEDSRLGDFIEADGE-TPEDKVAKNLLREDLEAVLNTLSPRERDVLRLRYGLDDGRMK 359
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 360 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 399
[48][TOP]
>UniRef100_C7QR23 RNA polymerase, sigma 70 subunit, RpoD subfamily n=2 Tax=Cyanothece
RepID=C7QR23_CYAP0
Length = 379
Score = 91.3 bits (225), Expect = 5e-17
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + +RRKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 220 LPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 279
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E PE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 280 GKEEDSRLGDFIEADGE-NPEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMK 338
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 339 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378
[49][TOP]
>UniRef100_C0YS93 RNA polymerase sigma-70 factor n=2 Tax=Chryseobacterium
RepID=C0YS93_9FLAO
Length = 288
Score = 91.3 bits (225), Expect = 5e-17
Identities = 52/160 (32%), Positives = 91/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++A L + R P+ +ELAEVL+++ + + S + +S+D +
Sbjct: 127 LPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEEDIKESMKNSGRHLSMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +++ +P+K + + ++ + + LN L RE +VRLYFGL+G P+
Sbjct: 187 VEGEDSNLYDVLRSGESPSPDKDLMLESLQIEIERALNTLTPREADLVRLYFGLNGKHPM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T LK Y+
Sbjct: 247 TLEEIGETFDLTRERVRQIKEKAIKRLKHNTRSKILKSYL 286
[50][TOP]
>UniRef100_A9RTR4 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR4_PHYPA
Length = 591
Score = 91.3 bits (225), Expect = 5e-17
Identities = 52/160 (32%), Positives = 96/160 (60%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++++I++A +L + R+P +E+AE++ ++V + + + ++ P S+D+ +
Sbjct: 427 LPIHLYEVISRINKAKKMLIQEHGRQPRDEEVAELVGMSVEKLKFIVKSAKTPSSMDRLI 486
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + E+I +PE + +Q++KQ V +L LN RE +++RL FGLD
Sbjct: 487 GKEKDQSIGEMIADKDVESPEDDLIRQVLKQDVDGVLCTLNPREREVLRLRFGLDDGQSR 546
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG + K++RERIRQI A+ KL+Q + L+ Y+
Sbjct: 547 TLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRNGVLREYL 586
[51][TOP]
>UniRef100_Q6AK94 RNA polymerase sigma factor n=1 Tax=Desulfotalea psychrophila
RepID=Q6AK94_DESPS
Length = 447
Score = 90.9 bits (224), Expect = 6e-17
Identities = 56/160 (35%), Positives = 92/160 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + ++ +A L K L R+PT E+++ N+ + + + E SR+PISL+ V
Sbjct: 288 LPVHFLELRSQFFKAFYALFKELGREPTPLEISKTTNLPMDKILSILEASREPISLETPV 347
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + T + + +P + V+ + + V ++L+ L+ REEKI+RL FG+
Sbjct: 348 GD-DDSTLGDFLENQESQSPYEAVQNRELSGRVTEILSTLSDREEKIIRLRFGIGEKAEY 406
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIGK +SRERIRQI AL++L+ ++ D LKF+V
Sbjct: 407 TLEEIGKRFNVSRERIRQIEKKALNRLRHSSRRDKLKFFV 446
[52][TOP]
>UniRef100_A9RTR6 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9RTR6_PHYPA
Length = 583
Score = 90.9 bits (224), Expect = 6e-17
Identities = 47/160 (29%), Positives = 94/160 (58%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++++I++A + + L R+P +E+A ++ ++V + + + +R P S+D+ +
Sbjct: 420 LPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMVGMSVEKLLFIVKSARPPTSMDRPI 479
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
G + E++ +PE + Q++KQ + +L LN E +++RL FGL G +
Sbjct: 480 GKDGEQSLGEMVADKGVGSPEDDIMTQVLKQDIEDVLRSLNPMEREVLRLRFGLSGAQSM 539
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +++G + K++RERIRQI AL KL+ ++ L+ +V
Sbjct: 540 TLKDLGIIFKVTRERIRQIEAKALRKLRHPSWKTLLQDHV 579
[53][TOP]
>UniRef100_Q7U5C4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 8102
RepID=Q7U5C4_SYNPX
Length = 471
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 312 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 371
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 372 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 430
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 431 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 470
[54][TOP]
>UniRef100_Q3AWQ6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3AWQ6_SYNS9
Length = 451
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 292 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 351
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 352 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 410
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 411 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[55][TOP]
>UniRef100_Q3ALS7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9605
RepID=Q3ALS7_SYNSC
Length = 435
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 276 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 335
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 336 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 394
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 395 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 434
[56][TOP]
>UniRef100_Q0I8I7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9311
RepID=Q0I8I7_SYNS3
Length = 440
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 281 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 340
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 341 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 399
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 400 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 439
[57][TOP]
>UniRef100_A5GJC2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7803
RepID=A5GJC2_SYNPW
Length = 450
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 291 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 350
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 351 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 409
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 410 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 449
[58][TOP]
>UniRef100_Q05YJ7 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q05YJ7_9SYNE
Length = 451
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 292 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 351
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 352 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 410
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 411 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
[59][TOP]
>UniRef100_Q05RP2 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9916
RepID=Q05RP2_9SYNE
Length = 479
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 320 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 379
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 380 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 438
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 439 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 478
[60][TOP]
>UniRef100_D0CLH5 RNA polymerase sigma factor RpoD n=1 Tax=Synechococcus sp. WH 8109
RepID=D0CLH5_9SYNE
Length = 458
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 299 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 358
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 359 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 417
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 418 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 457
[61][TOP]
>UniRef100_B5VWQ7 RNA polymerase sigma factor n=1 Tax=Arthrospira maxima CS-328
RepID=B5VWQ7_SPIMA
Length = 387
Score = 90.5 bits (223), Expect = 8e-17
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 228 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 287
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 288 GKEEDSRLGDFIESDGE-TPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMK 346
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 347 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386
[62][TOP]
>UniRef100_B4WPM0 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. PCC 7335
RepID=B4WPM0_9SYNE
Length = 404
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + L RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 245 LPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 304
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 305 GKEEDSRLGDFIESDGE-TPEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMK 363
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 364 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[63][TOP]
>UniRef100_A4CRY9 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 7805
RepID=A4CRY9_SYNPV
Length = 447
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 288 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 347
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 348 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 406
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 407 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 446
[64][TOP]
>UniRef100_A3Z5L5 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RS9917
RepID=A3Z5L5_9SYNE
Length = 456
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 297 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 356
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 357 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 415
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 416 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 455
[65][TOP]
>UniRef100_A3YZH3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. WH 5701
RepID=A3YZH3_9SYNE
Length = 469
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 310 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 369
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 370 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 428
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 429 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 468
[66][TOP]
>UniRef100_A0YTZ3 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YTZ3_9CYAN
Length = 391
Score = 90.5 bits (223), Expect = 8e-17
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 232 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 291
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 292 GKEEDSRLGDFIESDGE-TPEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMK 350
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 351 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390
[67][TOP]
>UniRef100_C1E4E8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E4E8_9CHLO
Length = 595
Score = 90.5 bits (223), Expect = 8e-17
Identities = 54/163 (33%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + +++++S+ + +L R PT++ELA+ + + V + + + S PISL +TV
Sbjct: 422 LPVHLFEIISRMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTV 481
Query: 389 TDYGN---LTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGD 219
+ T ++ + PE K L+K+ + +LN LN RE ++RL +GLD
Sbjct: 482 NNSNGEDKRTVEDTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDG 541
Query: 218 TPLSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG V ++RERIRQI AL KL+Q + L+ Y+
Sbjct: 542 RVKTLEEIGNVFSVTRERIRQIEAKALRKLRQPSRNGILREYL 584
[68][TOP]
>UniRef100_B1X5Q2 RNA polymerase sigma factor n=1 Tax=Paulinella chromatophora
RepID=B1X5Q2_PAUCH
Length = 460
Score = 90.5 bits (223), Expect = 8e-17
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 301 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 360
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 361 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 419
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 420 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 459
[69][TOP]
>UniRef100_UPI0001983B83 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI0001983B83
Length = 561
Score = 90.1 bits (222), Expect = 1e-16
Identities = 51/159 (32%), Positives = 84/159 (52%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++ K+ EA + + PT +E+AE + + + + + +R P+S+ + V
Sbjct: 398 LPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPV 457
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ TF+E+ P+ V KQL++Q V LL+ L +E +I+RL FG+ P
Sbjct: 458 WADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPR 517
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ EIG V S+ER+RQ+ AL KL+Q L+ Y
Sbjct: 518 TLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESY 556
[70][TOP]
>UniRef100_Q7V698 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9313 RepID=Q7V698_PROMM
Length = 461
Score = 90.1 bits (222), Expect = 1e-16
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 302 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 361
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 362 GKEEDSRLGDFIESDTE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 420
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ +++RERIRQI AL KL+ LK Y+
Sbjct: 421 TLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 460
[71][TOP]
>UniRef100_Q46GS6 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL2A RepID=Q46GS6_PROMT
Length = 420
Score = 90.1 bits (222), Expect = 1e-16
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 259 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 318
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 319 GKEEDSRLGDFIEADIE-NPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 377
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 378 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
[72][TOP]
>UniRef100_A2C7M0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9303 RepID=A2C7M0_PROM3
Length = 444
Score = 90.1 bits (222), Expect = 1e-16
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 285 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 344
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 345 GKEEDSRLGDFIESDTE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 403
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ +++RERIRQI AL KL+ LK Y+
Sbjct: 404 TLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 443
[73][TOP]
>UniRef100_A2C0V5 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
NATL1A RepID=A2C0V5_PROM1
Length = 420
Score = 90.1 bits (222), Expect = 1e-16
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 259 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 318
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 319 GKEEDSRLGDFIEADIE-NPEQDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 377
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 378 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
[74][TOP]
>UniRef100_C6W468 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Dyadobacter fermentans DSM 18053 RepID=C6W468_DYAFD
Length = 287
Score = 90.1 bits (222), Expect = 1e-16
Identities = 50/160 (31%), Positives = 92/160 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G + KIS+ + L +R R+P+ +ELAEVL ++ S V + S + +S+D
Sbjct: 127 LPLNRVGSLNKISKTFSELEQRFEREPSPEELAEVLEISSSEVVDTMKISGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ +++ +E P+ + + +++ V + L L +RE ++ LYFGL+G+ +
Sbjct: 187 VQGEENSLLDVLENDLEDKPDSGLVNESLRKEVQRALCTLTQREADVIALYFGLNGEHAM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ + +LK Y+
Sbjct: 247 TLEEIGEKFNLTRERVRQIKEKAIRRLRHVSRSKALKTYL 286
[75][TOP]
>UniRef100_A7PT61 Chromosome chr8 scaffold_29, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PT61_VITVI
Length = 284
Score = 90.1 bits (222), Expect = 1e-16
Identities = 51/159 (32%), Positives = 84/159 (52%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++ K+ EA + + PT +E+AE + + + + + +R P+S+ + V
Sbjct: 121 LPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPV 180
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ TF+E+ P+ V KQL++Q V LL+ L +E +I+RL FG+ P
Sbjct: 181 WADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPR 240
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ EIG V S+ER+RQ+ AL KL+Q L+ Y
Sbjct: 241 TLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESY 279
[76][TOP]
>UniRef100_B2VA41 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium sp.
YO3AOP1 RepID=B2VA41_SULSY
Length = 281
Score = 89.7 bits (221), Expect = 1e-16
Identities = 55/164 (33%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ +AK+ E L++ L R+PT +E+A+ LN +V V R PISLD +
Sbjct: 119 IPVKESLFIAKVKETYEKLKEELGREPTEEEIAKRLNTSVKKVKNALSIVRLPISLDMPL 178
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAK----LLNKLNKREEKIVRLYFGLDG 222
+ G F + + T + +EK+LI++ + K +L+ L++RE++I+++ +GLDG
Sbjct: 179 GEGGEEDFTLLDVLSKKGTED--IEKELIEETIHKELESMLDVLDEREKEIIKMRYGLDG 236
Query: 221 DTPLSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ P + EE+G+ L +SRER+RQ+ AL KL+ LK ++
Sbjct: 237 EEPKTLEEVGEKLGISRERVRQLEQRALKKLKAVALKKHLKDFL 280
[77][TOP]
>UniRef100_A0YY85 RNA polymerase sigma factor n=1 Tax=Lyngbya sp. PCC 8106
RepID=A0YY85_9CYAN
Length = 331
Score = 89.7 bits (221), Expect = 1e-16
Identities = 50/161 (31%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + K+ + LR+ LRRKPT DELAE L+++ + L+ + R+ +SL+ V
Sbjct: 170 LPVHVVEQLNKLQGIHQDLRRSLRRKPTEDELAEALSISPQQLRLLEQVRRKSLSLNHRV 229
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNK-LNKREEKIVRLYFGLDGDTP 213
N +++ ++PE + + +++Q + ++L LN+RE+ I+ L +GL P
Sbjct: 230 GSEENSELMDLLEDYESLSPESQINELMMRQELLEVLRSVLNEREQDILSLRYGLTTGVP 289
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +E+ + LSRER+RQI A+ KL++ + LK ++
Sbjct: 290 YTLDEVSGMCSLSRERVRQIQAKAMRKLRRPQVAERLKGWI 330
[78][TOP]
>UniRef100_UPI0001BA0CEB RNA polymerase sigma factor rpoD n=1 Tax=Blattabacterium sp.
(Periplaneta americana) str. BPLAN RepID=UPI0001BA0CEB
Length = 287
Score = 89.4 bits (220), Expect = 2e-16
Identities = 46/159 (28%), Positives = 94/159 (59%)
Frame = -3
Query: 566 PGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVT 387
P K ++ KI + L + L+R P+ E+AE L++N V + S + +S+D +
Sbjct: 128 PTNKLALLNKILKTLAQLEQELQRTPSAREIAEHLDMNEKDVEESIKNSGRHVSMDAPLI 187
Query: 386 DYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLS 207
+ + +++ P++ +E++ +++ + ++L L++RE +++ L+FGL+G P++
Sbjct: 188 EGEDSNLYDLVRSDESPRPDEHLERESLRKDIKRILETLSERERRVIILHFGLNGSPPMT 247
Query: 206 FEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
EE+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 248 LEEVGQSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
[79][TOP]
>UniRef100_C6X620 RNA polymerase sigma factor RpoD n=1 Tax=Flavobacteriaceae
bacterium 3519-10 RepID=C6X620_FLAB3
Length = 294
Score = 89.4 bits (220), Expect = 2e-16
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++A L + R P+ +ELAEVL+++ + + S + +S+D +
Sbjct: 133 LPLNKIGSINKINKAYAHLEQENERPPSPEELAEVLDMSEDDIKESMKNSGRHLSMDAPL 192
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +++ +P+K + + ++ + + L L RE +VRLYFGL+G P+
Sbjct: 193 VEGEDSNLYDVLRSGESPSPDKELMLESLQIEIERALQTLTPREADLVRLYFGLNGKHPM 252
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T LK Y+
Sbjct: 253 TLEEIGETFDLTRERVRQIKEKAIKRLKHNTRSKILKSYL 292
[80][TOP]
>UniRef100_Q0AWU4 RNA polymerase sigma factor n=1 Tax=Syntrophomonas wolfei subsp.
wolfei str. Goettingen RepID=Q0AWU4_SYNWW
Length = 358
Score = 89.0 bits (219), Expect = 2e-16
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+S L + L R+PT E+AE +++ V V + + +++P+SL+ +
Sbjct: 198 IPVHMVETINKLSRVQRSLLQILGREPTPAEVAEEMDIAVDRVIEIMKVAQEPVSLETPI 257
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + I +PE+ L+++ + +LN L +REEK++RL FGLD P
Sbjct: 258 GEEDDSHLGDFITDEEAESPEESASFVLLREHLDGILNTLTEREEKVLRLRFGLDDGRPR 317
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 318 TLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYI 357
[81][TOP]
>UniRef100_B0CDC4 RNA polymerase sigma factor n=1 Tax=Acaryochloris marina MBIC11017
RepID=B0CDC4_ACAM1
Length = 371
Score = 89.0 bits (219), Expect = 2e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 212 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 271
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE +++L +GLD
Sbjct: 272 GKEEDSRLGDFIESDGE-TPEDQVSKSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMK 330
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 331 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 370
[82][TOP]
>UniRef100_A5GSD3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. RCC307
RepID=A5GSD3_SYNR3
Length = 401
Score = 89.0 bits (219), Expect = 2e-16
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 242 LPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 301
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E P++ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 302 GKEEDSRLGDFIEADIE-NPDQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 360
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 361 TLEEIGQIFDVTRERIRQIEAKALLKLRHPNRNGVLKEYI 400
[83][TOP]
>UniRef100_B9XH89 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
RepID=B9XH89_9BACT
Length = 614
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/160 (33%), Positives = 85/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ A L + R+ T +E+A+ + ++V V + + ++QPIS+ +V
Sbjct: 449 IPVHMIEIIGKLMRAQKQLLQEFGREATPEEIADEMQISVERVKSILKMAQQPISMQASV 508
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + TF + I P M L+K + +L L +RE +IV L FGL
Sbjct: 509 GDSDDATFGDFIEDKSAENPSDMTSYSLLKDKLNDVLATLTERERRIVELRFGLVDGYAR 568
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK K++RERIRQI AL KL+ T V LK ++
Sbjct: 569 TLEEVGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFL 608
[84][TOP]
>UniRef100_B5ILG7 RNA polymerase sigma factor n=1 Tax=Cyanobium sp. PCC 7001
RepID=B5ILG7_9CHRO
Length = 503
Score = 89.0 bits (219), Expect = 2e-16
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + L + RKPT +E+AE + + + + +++ ++ PISL+ +
Sbjct: 344 LPVHLYETISRIKKTTKTLSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 403
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 404 GKEEDSRLGDFIEADIE-NPEQDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 462
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 463 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 502
[85][TOP]
>UniRef100_B4D7Q1 RNA polymerase sigma factor n=1 Tax=Chthoniobacter flavus Ellin428
RepID=B4D7Q1_9BACT
Length = 296
Score = 89.0 bits (219), Expect = 2e-16
Identities = 53/145 (36%), Positives = 86/145 (59%), Gaps = 3/145 (2%)
Frame = -3
Query: 548 MVAKISEANNV---LRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
+V KIS+ V + + L R+PT DELAE + ++ ++ + S +P SLD ++D
Sbjct: 126 LVDKISKMRRVALQMSEELGREPTDDELAEEVGLSSGKISQLKTVSIRPASLDAPISDDD 185
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ F EI+ +TP + + + ++ V LL L++RE+KI+ FGLDG + EE
Sbjct: 186 STEFGEIVGDLEALTPFERLRDKNLRDEVGDLLEVLDEREKKIIFSRFGLDGGKAKTLEE 245
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQ 123
+GK ++RERIRQ+ IAL KL++
Sbjct: 246 VGKKFGVTRERIRQLQNIALMKLRR 270
[86][TOP]
>UniRef100_A3HT44 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Algoriphagus sp.
PR1 RepID=A3HT44_9SPHI
Length = 287
Score = 89.0 bits (219), Expect = 2e-16
Identities = 50/160 (31%), Positives = 91/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G + KIS+ + L +R R+P+ +ELAEVL V + V + S + +S+D
Sbjct: 127 LPLNRVGSLNKISKTFSELEQRFEREPSPEELAEVLEVTANEVVDTMKISGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ +++ + P+ + +++ V + L+ L +RE ++ LYFGL+G+ +
Sbjct: 187 VQGEENSLLDVLENDGDEKPDDGLMNDSLRKEVQRALSTLTQREADVITLYFGLNGEHAM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T+ +LK Y+
Sbjct: 247 TLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKTLKPYL 286
[87][TOP]
>UniRef100_Q7XXT0 Plastid sigma factor 2A n=1 Tax=Oryza sativa Japonica Group
RepID=Q7XXT0_ORYSJ
Length = 564
Score = 89.0 bits (219), Expect = 2e-16
Identities = 52/161 (32%), Positives = 87/161 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ E LR++L+R+PT +E+A + + V + +SLD +
Sbjct: 400 LPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI 459
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++E+ P T E+M+ + +K+ V K L+ L RE ++V L FGL+
Sbjct: 460 GST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIR 518
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG + +SRERIRQI A KL+ V++LK Y+V
Sbjct: 519 TLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[88][TOP]
>UniRef100_Q53KH8 Os11g0448400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q53KH8_ORYSJ
Length = 564
Score = 89.0 bits (219), Expect = 2e-16
Identities = 52/161 (32%), Positives = 87/161 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ E LR++L+R+PT +E+A + + V + +SLD +
Sbjct: 400 LPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI 459
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++E+ P T E+M+ + +K+ V K L+ L RE ++V L FGL+
Sbjct: 460 GST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIR 518
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG + +SRERIRQI A KL+ V++LK Y+V
Sbjct: 519 TLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[89][TOP]
>UniRef100_Q53JE7 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=Q53JE7_ORYSJ
Length = 563
Score = 89.0 bits (219), Expect = 2e-16
Identities = 52/161 (32%), Positives = 87/161 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ E LR++L+R+PT +E+A + + V + +SLD +
Sbjct: 400 LPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI 459
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++E+ P T E+M+ + +K+ V K L+ L RE ++V L FGL+
Sbjct: 460 GST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIR 518
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG + +SRERIRQI A KL+ V++LK Y+V
Sbjct: 519 TLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 559
[90][TOP]
>UniRef100_B9SDA3 RNA polymerase sigma factor rpoD1, putative n=1 Tax=Ricinus
communis RepID=B9SDA3_RICCO
Length = 569
Score = 89.0 bits (219), Expect = 2e-16
Identities = 54/161 (33%), Positives = 86/161 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ EA L R P +E+AE +++ ++ V + P SLD+ +
Sbjct: 408 LPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLLTPKAPRSLDQKI 467
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+L E+I P T E+++ KQ +KQ + K+LN LN RE ++VR FGL+
Sbjct: 468 GMNMDLKPSEVIADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMK 527
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG+++ +SRERIRQI A KL+ LK Y++
Sbjct: 528 TLQEIGEIMGVSRERIRQIESSAFRKLKNKKRTKQLKQYLL 568
[91][TOP]
>UniRef100_B8AUZ3 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AUZ3_ORYSI
Length = 563
Score = 89.0 bits (219), Expect = 2e-16
Identities = 52/161 (32%), Positives = 87/161 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ E LR++L+R+PT +E+A + + V + +SLD +
Sbjct: 399 LPAHMVEASYRVKECIKRLRRKLKRRPTNEEIAADTGMPIKRVEAAVNLPKYSVSLDSKI 458
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++E+ P T E+M+ + +K+ V K L+ L RE ++V L FGL+
Sbjct: 459 GST-DMTYQEVTADPTAETAEEMLNRLSMKRDVHKALDTLTTRERQVVTLRFGLEDGRIR 517
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG + +SRERIRQI A KL+ V++LK Y+V
Sbjct: 518 TLQEIGNTMGVSRERIRQIESAAFRKLRSKKRVNALKDYLV 558
[92][TOP]
>UniRef100_Q2JJL6 RNA polymerase sigma factor n=1 Tax=Synechococcus sp.
JA-2-3B'a(2-13) RepID=Q2JJL6_SYNJB
Length = 403
Score = 88.6 bits (218), Expect = 3e-16
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + L RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 244 LPVHLYETISRIKKVTKLLSQELGRKPTEEEIATRMEITIEKLRFIAKSAQLPISLETPI 303
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L L RE +++L +GLD
Sbjct: 304 GKEEDSRLGDFIESDGE-TPEDRVAKVLLREDLESVLETLTARERDVLKLRYGLDDGRMK 362
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 363 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 402
[93][TOP]
>UniRef100_C1DV14 RNA polymerase sigma factor n=1 Tax=Sulfurihydrogenibium azorense
Az-Fu1 RepID=C1DV14_SULAA
Length = 282
Score = 88.6 bits (218), Expect = 3e-16
Identities = 53/162 (32%), Positives = 94/162 (58%), Gaps = 2/162 (1%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ ++K+ A L++ L R+PT +E+A+ L +V V RQPISLD +
Sbjct: 120 IPIKESLFISKVKNAYEKLKESLGREPTEEEIAKELKTSVKKVKNALAIVRQPISLDMPL 179
Query: 389 TDYG--NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDT 216
+ G + T +I+ EK + + +K+ +LLN L++RE +I++L +GL+G
Sbjct: 180 GEGGEEDFTLLDILSKKGTEDVEKDLVESTLKEEFERLLNVLDEREREIIKLRYGLEGLE 239
Query: 215 PLSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
P + EE+G++L +SRER+RQ+ AL KL+ L+ ++
Sbjct: 240 PKTLEEVGEMLGISRERVRQLEQRALKKLKAVALKKHLQNFL 281
[94][TOP]
>UniRef100_B3DXQ3 RNA polymerase sigma factor n=1 Tax=Methylacidiphilum infernorum V4
RepID=B3DXQ3_METI4
Length = 287
Score = 88.6 bits (218), Expect = 3e-16
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP +AK+ L + L R PT +ELAE L ++ + V + + +P SLD TV
Sbjct: 117 LPVHLVDKIAKMRRVAMQLSEILGRDPTDEELAEELGMSTTKVAELRTIAIRPASLDATV 176
Query: 389 TDYGNLT-FKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
+ + T E++ +P++ V Q +K + +LL KL++RE KI+ L FGL+G+
Sbjct: 177 GEEEDGTALGELVKDESAASPDQSVLDQNLKNTIMELLPKLDERERKILSLRFGLEGNEQ 236
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
++ EEIGK ++RERIRQ+ IAL K+++
Sbjct: 237 MTLEEIGKEFHVTRERIRQLQNIALRKIRK 266
[95][TOP]
>UniRef100_P33656 RNA polymerase sigma factor rpoD n=1 Tax=Clostridium acetobutylicum
RepID=RPOD_CLOAB
Length = 378
Score = 88.6 bits (218), Expect = 3e-16
Identities = 49/160 (30%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+P +E+A+++++ V V + + +++P+SL+ +
Sbjct: 218 IPVHMVETINKLIRVSRQLLQELGREPQPEEIAKIMDMPVDKVREIMKIAQEPVSLETPI 277
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P +++K+ + K+LN L REEK++RL FGLD
Sbjct: 278 GEEEDSHLGDFIPDDEAPAPADAAAFRMLKEQLLKILNTLTPREEKVLRLRFGLDDGRAR 337
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK Y+
Sbjct: 338 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 377
[96][TOP]
>UniRef100_Q83MU3 RNA polymerase sigma factor n=1 Tax=Tropheryma whipplei str. Twist
RepID=Q83MU3_TROWT
Length = 387
Score = 88.2 bits (217), Expect = 4e-16
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+S L + L R+PT DEL L++ V V + R+PISL +
Sbjct: 227 IPVHMVEVINKLSRVQRQLLQDLGREPTPDELGRELDMPPERVVEVQKYGREPISLHTPL 286
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ F ++I + P+ V +++Q + LL+ L++RE ++R+ FGLD D P
Sbjct: 287 GDEGDSEFGDLIEDVDAVAPDDAVGFSMLQQQLRLLLDSLSEREAGVIRMRFGLDDDMPK 346
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ + +G+ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 347 TLDYVGEYFDVTRERIRQIEAKTMAKLRHPSRSQCLRDYL 386
[97][TOP]
>UniRef100_Q7V2I0 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus subsp.
pastoris str. CCMP1986 RepID=Q7V2I0_PROMP
Length = 396
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 237 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 296
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 297 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 355
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 356 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 395
[98][TOP]
>UniRef100_Q31C37 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9312 RepID=Q31C37_PROM9
Length = 393
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 234 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 293
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 294 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 352
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 353 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[99][TOP]
>UniRef100_B2KBW8 RNA polymerase sigma factor n=1 Tax=Elusimicrobium minutum Pei191
RepID=B2KBW8_ELUMP
Length = 571
Score = 88.2 bits (217), Expect = 4e-16
Identities = 50/159 (31%), Positives = 88/159 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P +V+K+++ N R+ R+P+ ++ ++ L +++ V V + + PISL V
Sbjct: 410 IPVHMKELVSKLTKVTNKFRQEHGREPSLEDYSKSLRLSMEKVKGVLKIMQDPISLSTPV 469
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + ++ I P L KQ V+++LN L++RE KI+RL FG+D P
Sbjct: 470 GEDEDSNLEDFIEDKAGANPTVTASDFLRKQEVSEVLNTLSEREAKIIRLRFGIDSGYPR 529
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ EE+GK+ ++RER+RQI A+ KL+ + LK Y
Sbjct: 530 TLEEVGKMFNVTRERVRQIEAKAIRKLRHPSRTKMLKDY 568
[100][TOP]
>UniRef100_A9WEI7 RNA polymerase sigma factor n=2 Tax=Chloroflexus RepID=A9WEI7_CHLAA
Length = 345
Score = 88.2 bits (217), Expect = 4e-16
Identities = 52/157 (33%), Positives = 87/157 (55%)
Frame = -3
Query: 560 EKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDY 381
E G V +I+E L + L R+PT +E+A L V + + E +R+P+SL+ V D
Sbjct: 191 ESVGQVKRIAER---LAQSLERQPTAEEIAMALGQPVERIQRILEAARRPVSLETPVGDE 247
Query: 380 GNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFE 201
G T + + TP +M ++L+++ + L++LN RE +I+ L +GL + E
Sbjct: 248 GEHTLGDFLTDEELPTPGEMAAQKLLRRDLCAALDRLNDRERRIIDLRYGLVDGRRRTLE 307
Query: 200 EIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
E+G+VL ++RER RQI AL +L+ L+ Y+
Sbjct: 308 EVGRVLGMTRERARQIEAEALRRLRSPEVGQHLRDYL 344
[101][TOP]
>UniRef100_A8G3L2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9215 RepID=A8G3L2_PROM2
Length = 393
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 234 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 293
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 294 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 352
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 353 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[102][TOP]
>UniRef100_A4TCQ2 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCQ2_MYCGI
Length = 329
Score = 88.2 bits (217), Expect = 4e-16
Identities = 52/159 (32%), Positives = 83/159 (52%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELAE + V + + E SR P+SLD V
Sbjct: 169 LPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPV 228
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE++++RL FGLD P
Sbjct: 229 GSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPR 288
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI ++KL+ D L+ Y
Sbjct: 289 TLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 327
[103][TOP]
>UniRef100_A3PBM1 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9301 RepID=A3PBM1_PROM0
Length = 394
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 235 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 294
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 295 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 353
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 354 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[104][TOP]
>UniRef100_A2BVF8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9515 RepID=A2BVF8_PROM5
Length = 397
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 238 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 297
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 298 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 356
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 357 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 396
[105][TOP]
>UniRef100_A2BPX8 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
AS9601 RepID=A2BPX8_PROMS
Length = 394
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 235 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 294
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 295 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 353
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 354 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
[106][TOP]
>UniRef100_C4CIZ0 RNA polymerase sigma factor n=1 Tax=Sphaerobacter thermophilus DSM
20745 RepID=C4CIZ0_9CHLR
Length = 390
Score = 88.2 bits (217), Expect = 4e-16
Identities = 51/158 (32%), Positives = 87/158 (55%)
Frame = -3
Query: 563 GEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTD 384
GE V K S+ L++ R+PT++E+A +++ V V + SR P+SL+ V
Sbjct: 235 GETINRVKKTSQR---LQQIFEREPTFEEVARAMDIPEEKVRQVLDASRHPVSLEAPVGQ 291
Query: 383 YGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSF 204
G+ + I P ++ ++L+K ++ L+KL +RE +I+ L FGL+ +
Sbjct: 292 EGDAFLGDFIEDDTMPPPLELASQELLKHQISDALSKLTERERRIIILRFGLEDGQFRTL 351
Query: 203 EEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
EE+G+ ++RERIRQI AL KL+ T+ L+ Y+
Sbjct: 352 EEVGREFGITRERIRQIEAKALRKLRHPTYSHRLRGYL 389
[107][TOP]
>UniRef100_B9P0P2 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9202 RepID=B9P0P2_PROMA
Length = 393
Score = 88.2 bits (217), Expect = 4e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 234 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 293
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I +E PE+ V K L+++ + +L L+ RE ++RL +G+D
Sbjct: 294 GKEEDSRLGDFIEADIE-NPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGIDDGRMK 352
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 353 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
[108][TOP]
>UniRef100_C6Y2J2 RNA polymerase sigma factor, sigma-70 family n=2 Tax=Pedobacter
RepID=C6Y2J2_PEDHD
Length = 286
Score = 88.2 bits (217), Expect = 4e-16
Identities = 51/160 (31%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G ++KIS+A + L + R+P+ +ELA++L V ++ S + +S+D
Sbjct: 127 LPLNQVGSLSKISKAFSKLEQEYEREPSPEELADILETTVDKISDTLSNSGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
T +++ T ++ + L ++ + + L+ L +RE +I+ L+FGL + PL
Sbjct: 187 VQGEENTLLDVLENHEPNTDSSLINESLSEE-IKRSLSTLTEREREIIVLFFGLSTNHPL 245
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
S EEIG+ L+RER+RQI AL +L+ T+ LK Y+
Sbjct: 246 SLEEIGEKFNLTRERVRQIKDKALQRLRHTSRSKILKSYL 285
[109][TOP]
>UniRef100_Q9ZPL2 Sigma factor SIG2A n=1 Tax=Zea mays RepID=Q9ZPL2_MAIZE
Length = 539
Score = 88.2 bits (217), Expect = 4e-16
Identities = 52/161 (32%), Positives = 87/161 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ E LR++LRR+PT +E+A + + V + +SLD +
Sbjct: 375 LPAHMVEASYRVKECTKRLRRKLRRRPTNEEIAVDTGIPIKRVEAAVNLPKYSVSLDSKI 434
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++E+ P T E+M+ + +K+ V L+ L RE+++V L FGL+
Sbjct: 435 GST-DMTYQEVTADPSAETAEEMLNRMSMKKDVHMALDTLTTREKQVVVLRFGLEDGRIR 493
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG ++ +SRERIRQI A KL+ V +LK Y+V
Sbjct: 494 TLQEIGNIMGVSRERIRQIESGAFRKLRSKKKVKALKDYLV 534
[110][TOP]
>UniRef100_A4RYI5 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4RYI5_OSTLU
Length = 344
Score = 88.2 bits (217), Expect = 4e-16
Identities = 52/160 (32%), Positives = 89/160 (55%), Gaps = 1/160 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + ++++IS+ R PT +E+A ++++ +T + + ++ P+SL +T+
Sbjct: 168 LPVHLFEIISRISKMEQKFALHNGRNPTTEEIAAEMDMSAEKITQIKKAAQAPVSLAQTM 227
Query: 389 T-DYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
D T ++ + PEK+ K L+K+ + +LN LN RE ++RL +GLD
Sbjct: 228 GGDNKGRTVEDTLVDVTAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRV 287
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ EEIG V ++RERIRQI AL KL+Q + L+ Y
Sbjct: 288 KTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNSILQEY 327
[111][TOP]
>UniRef100_Q8DL79 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus elongatus
BP-1 RepID=Q8DL79_THEEB
Length = 418
Score = 87.8 bits (216), Expect = 5e-16
Identities = 49/160 (30%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A+ + + + + +++ ++ PISL+ +
Sbjct: 259 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPI 318
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L L+ RE +++L +GLD
Sbjct: 319 GKEEDSRLGDFIESDGE-TPEDQVSKHLLREDLETVLCTLSPRERDVLKLRYGLDDGRMK 377
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 378 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 417
[112][TOP]
>UniRef100_Q5N3Q1 RNA polymerase sigma factor n=1 Tax=Synechococcus elongatus PCC
6301 RepID=Q5N3Q1_SYNP6
Length = 399
Score = 87.8 bits (216), Expect = 5e-16
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 240 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 299
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 300 GKEEDSRLGDFIEADGE-TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 358
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 359 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[113][TOP]
>UniRef100_O67464 RNA polymerase sigma factor n=1 Tax=Aquifex aeolicus
RepID=O67464_AQUAE
Length = 575
Score = 87.8 bits (216), Expect = 5e-16
Identities = 51/157 (32%), Positives = 90/157 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + KI +A+ L + R+PT +E+AE L++ V V V + S++PISL+ +
Sbjct: 415 IPVHMIETINKIIKASKKLFQENGREPTPEEIAEYLDIPVEKVKKVMKFSQEPISLETPI 474
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + K+ I PE+ V ++L+++ + K+L+ L+++E +I+ +GL T
Sbjct: 475 GDDDDTFLKDFIEDKSIPNPEEQVTRKLLREQLQKVLSTLSEKEREILMYRYGLVDGTEY 534
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLK 99
+ E++GK+ ++RERIRQI AL KL+ LK
Sbjct: 535 TLEQVGKMFNVTRERIRQIENKALRKLRHPARAKYLK 571
[114][TOP]
>UniRef100_A1T7W4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7W4_MYCVP
Length = 329
Score = 87.8 bits (216), Expect = 5e-16
Identities = 52/159 (32%), Positives = 83/159 (52%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + V +T + E SR P+SLD V
Sbjct: 169 LPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVEKITDLLEHSRDPVSLDMPV 228
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE++++RL FGLD P
Sbjct: 229 GSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPR 288
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI ++KL+ D L+ Y
Sbjct: 289 TLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 327
[115][TOP]
>UniRef100_A0QVZ5 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis str.
MC2 155 RepID=A0QVZ5_MYCS2
Length = 319
Score = 87.8 bits (216), Expect = 5e-16
Identities = 52/159 (32%), Positives = 83/159 (52%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELAE + V + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE++++RL FGLD P
Sbjct: 219 GTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI ++KL+ D L+ Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
[116][TOP]
>UniRef100_A3ZNG6 RNA polymerase sigma factor n=1 Tax=Blastopirellula marina DSM 3645
RepID=A3ZNG6_9PLAN
Length = 507
Score = 87.8 bits (216), Expect = 5e-16
Identities = 47/149 (31%), Positives = 81/149 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ L + L R PT +E+AE +++ ++ + +R P+SLD+ V
Sbjct: 334 VPVHMIDTMGKVRAVTRDLLQELGRDPTAEEVAERAGLSIDDARVILKMNRNPLSLDQPV 393
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D+ + F E + + P +Q +K + ++L LN RE +I+RL +GL
Sbjct: 394 GDHDDSFFGEFLEDHRDEDPLYETHQQALKDRLCEVLEALNHREREIIRLRYGLTDGYSY 453
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
+ EE+GK+ ++RER+RQI A+ KLQQ
Sbjct: 454 TLEEVGKIFSVTRERVRQIESKAVRKLQQ 482
[117][TOP]
>UniRef100_A2TXT2 RNA polymerase sigma-70 factor n=1 Tax=Polaribacter sp. MED152
RepID=A2TXT2_9FLAO
Length = 287
Score = 87.8 bits (216), Expect = 5e-16
Identities = 47/160 (29%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G ++KI++ + L +R R PTY E+A L+ V V + S + +S+D
Sbjct: 127 LPLNKIGSISKINKVYSKLEQRNERIPTYVEIANELDTTVRNVAQSMKNSGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + ++ P+K + KQ + + + L L+ +E K+++++FGL T
Sbjct: 187 REGEDSNLYNVLKSDESPRPDKNLMKQSLDIEIDRALETLSHKEAKVIKMFFGLGNHTAS 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
S EIG+ L+RER+RQ+ A+ +LQ + + L++Y+
Sbjct: 247 SLSEIGETFDLTRERVRQVKQRAIRRLQNKSRTEVLRYYL 286
[118][TOP]
>UniRef100_Q017N3 SigA (ISS) n=1 Tax=Ostreococcus tauri RepID=Q017N3_OSTTA
Length = 525
Score = 87.8 bits (216), Expect = 5e-16
Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + ++++IS+ R PT +E+A + ++V +T + + ++ P+SL +T+
Sbjct: 354 LPVHLFEIISRISKMEQKFALYNGRPPTLEEIASEMEMSVEKITQIKKAAQAPVSLAQTM 413
Query: 389 T-DYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
+ T ++ + PEK+ K L+K+ + +LN LN RE ++RL +GLD
Sbjct: 414 GGENKGRTIEDTLIDANAEGPEKVSGKSLLKEDLENVLNTLNPRERDVLRLRYGLDDGRV 473
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ EEIG V ++RERIRQI AL KL+Q + L+ Y V
Sbjct: 474 KTLEEIGTVFSVTRERIRQIEAKALRKLKQPSRNQVLQEYFV 515
[119][TOP]
>UniRef100_P38023 RNA polymerase sigma factor rpoD1 n=1 Tax=Synechococcus elongatus
PCC 7942 RepID=RPOD1_SYNE7
Length = 399
Score = 87.8 bits (216), Expect = 5e-16
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 240 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 299
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L+ L+ RE ++RL +GLD
Sbjct: 300 GKEEDSRLGDFIEADGE-TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 358
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 359 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
[120][TOP]
>UniRef100_UPI0001AF41E8 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium kansasii
ATCC 12478 RepID=UPI0001AF41E8
Length = 319
Score = 87.4 bits (215), Expect = 7e-16
Identities = 52/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELAE + V + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVDKINDLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 219 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI + KL+ D L+ Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 317
[121][TOP]
>UniRef100_UPI000198388B PREDICTED: similar to SIGB (SIGMA FACTOR B); DNA binding /
DNA-directed RNA polymerase/ transcription factor n=1
Tax=Vitis vinifera RepID=UPI000198388B
Length = 578
Score = 87.4 bits (215), Expect = 7e-16
Identities = 51/161 (31%), Positives = 86/161 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ EA L R P +E+AE +++ + V + P SLD+ +
Sbjct: 417 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKI 476
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
NL E+I P T E+++ KQ +++ + K+LN LN RE++++R +GL+
Sbjct: 477 GINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTK 536
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG+++ +SRERIRQI A KL+ L+ Y+V
Sbjct: 537 TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLV 577
[122][TOP]
>UniRef100_Q892T0 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q892T0_CLOTE
Length = 366
Score = 87.4 bits (215), Expect = 7e-16
Identities = 48/160 (30%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+PT +E+A+ + ++V V + + +++P+SL+ +
Sbjct: 206 IPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMEISVDRVREIMKIAQEPVSLETPI 265
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP + P + ++K+ + +L+ L REEK++RL FGLD
Sbjct: 266 GEEEDSHLGDFIPDDDALAPAEAAAFTMLKEQLINVLDTLTPREEKVLRLRFGLDDGRAR 325
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK Y+
Sbjct: 326 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 365
[123][TOP]
>UniRef100_Q83NP7 RNA polymerase sigma factor n=1 Tax=Tropheryma whipplei TW08/27
RepID=Q83NP7_TROW8
Length = 387
Score = 87.4 bits (215), Expect = 7e-16
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+S L + L R+PT DEL L++ V V + R+PISL +
Sbjct: 227 IPVHMVEVINKLSRVQRQLLQDLGREPTPDELGRELDMPPERVVEVQKYGREPISLHTPL 286
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ F ++I + P+ V +++Q + LL+ L++RE ++R+ FGLD D P
Sbjct: 287 GDEGDSEFGDLIEDVDAVAPDDAVGFSMLQQQLRLLLDSLSEREAGVIRMRFGLDYDMPK 346
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ + +G+ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 347 TLDYVGEYFDVTRERIRQIEAKTMAKLRHPSRSQCLRDYL 386
[124][TOP]
>UniRef100_C0QT73 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QT73_PERMH
Length = 281
Score = 87.4 bits (215), Expect = 7e-16
Identities = 50/161 (31%), Positives = 92/161 (57%), Gaps = 1/161 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ ++K+ E L++ L+R+PT +E+AE + + V + R P SLDK +
Sbjct: 120 IPVKESLFISKVKETYEKLKEELKREPTIEEIAEKVGASPKKVKNALQVVRMPYSLDKPL 179
Query: 389 TDYG-NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
+ G +LT +++ EK + ++ + + + LLN L++RE I+ FGL+G+ P
Sbjct: 180 GEEGEDLTLLDVLSKKGTEDVEKEIVEESLHKELNTLLNVLDERERAIIEHRFGLNGEEP 239
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ E+G++L +SRER+RQ+ AL KL+ LK ++
Sbjct: 240 KTLTEVGEILGISRERVRQLEQRALKKLRALAMKRHLKDFL 280
[125][TOP]
>UniRef100_C7PI81 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Chitinophaga pinensis DSM 2588 RepID=C7PI81_CHIPD
Length = 285
Score = 87.4 bits (215), Expect = 7e-16
Identities = 49/160 (30%), Positives = 94/160 (58%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G K ++A + R+P+ +ELAE+L ++ S + + + + + +SLD V
Sbjct: 127 LPQNKIGTYNKANKAYMAFEQENEREPSTEELAEILEMSESEINNIFQSNTRHMSLDAPV 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ ++ +++ G ++T + ++ L ++ + ++L L+ RE +IV YFGLDG+
Sbjct: 187 HEAEDVAMGDLLEGG-DITDDDVMRDSL-REEIRRVLKSLSPREAEIVNAYFGLDGENGA 244
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ E+IG+ L++ERIRQI A+ +LQ+ + +LK Y+
Sbjct: 245 TIEQIGQKYDLTKERIRQIKERAIKRLQKARYSGALKSYL 284
[126][TOP]
>UniRef100_A7PSL8 Chromosome chr6 scaffold_28, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7PSL8_VITVI
Length = 235
Score = 87.4 bits (215), Expect = 7e-16
Identities = 51/161 (31%), Positives = 86/161 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ EA L R P +E+AE +++ + V + P SLD+ +
Sbjct: 74 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKI 133
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
NL E+I P T E+++ KQ +++ + K+LN LN RE++++R +GL+
Sbjct: 134 GINQNLKPSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTK 193
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ +EIG+++ +SRERIRQI A KL+ L+ Y+V
Sbjct: 194 TLQEIGELMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLV 234
[127][TOP]
>UniRef100_UPI0001B45B52 RNA polymerase sigma factor SigB n=1 Tax=Mycobacterium
intracellulare ATCC 13950 RepID=UPI0001B45B52
Length = 319
Score = 87.0 bits (214), Expect = 9e-16
Identities = 52/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + V + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVDKINDLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 219 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI +SKL+ D L+ Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
[128][TOP]
>UniRef100_Q2JS52 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. JA-3-3Ab
RepID=Q2JS52_SYNJA
Length = 404
Score = 87.0 bits (214), Expect = 9e-16
Identities = 49/160 (30%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + L + L R+PT +E+A + + + + +++ ++ PISL+ +
Sbjct: 245 LPVHLYETISRIKKVTKQLSQELGRRPTEEEIATRMEITIEKLRFIAKSAQLPISLETPI 304
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE+ V K L+++ + +L L RE +++L +GLD
Sbjct: 305 GKEEDSRLGDFIESEGE-TPEERVAKVLLREDLESVLETLTPRERDVLKLRYGLDDGRMK 363
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 364 TLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
[129][TOP]
>UniRef100_A1UF13 RNA polymerase sigma factor n=3 Tax=Mycobacterium
RepID=A1UF13_MYCSK
Length = 319
Score = 87.0 bits (214), Expect = 9e-16
Identities = 51/159 (32%), Positives = 82/159 (51%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELAE + + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE++++RL FGLD P
Sbjct: 219 GSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI ++KL+ D L+ Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
[130][TOP]
>UniRef100_C2M5A2 RNA polymerase sigma factor RpoD n=1 Tax=Capnocytophaga gingivalis
ATCC 33624 RepID=C2M5A2_CAPGI
Length = 287
Score = 87.0 bits (214), Expect = 9e-16
Identities = 49/160 (30%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++ L + R P+ +E+A+ L+++V+ V + S + IS+D +
Sbjct: 127 LPLNKIGSINKINKMYAYLEQTHERVPSAEEIAKELDMSVNDVKESMKNSGRHISMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +++ P+K + + +K + + L L RE ++RLYFGL + P+
Sbjct: 187 VEGEDSNLYDVLRSGESPNPDKELMHESLKTEIERALETLTPREADVIRLYFGLGENYPM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ +L+RER+RQI A+ +L+ T+ LK Y+
Sbjct: 247 TLEEIGETFELTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
[131][TOP]
>UniRef100_Q710C3 Sigma factor n=1 Tax=Spinacia oleracea RepID=Q710C3_SPIOL
Length = 575
Score = 87.0 bits (214), Expect = 9e-16
Identities = 51/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++ EA L ++P +E+AE +++ +T V + P SLD+ +
Sbjct: 414 LPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLMTPKAPRSLDQKI 473
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
NL E+I P T E ++ KQ ++Q + K+L+ L+ RE++++R FGL+
Sbjct: 474 GFNMNLKPSEVIADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMK 533
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+++ +SRERIRQI A KLQ +L+ Y+
Sbjct: 534 TLQEIGELMGVSRERIRQIESSAFRKLQNKKKTINLQQYM 573
[132][TOP]
>UniRef100_O83506 RNA polymerase sigma factor rpoD n=2 Tax=Treponema pallidum
RepID=RPOD_TREPA
Length = 611
Score = 87.0 bits (214), Expect = 9e-16
Identities = 48/160 (30%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K++ + L ++ R+P+ +E+A+ L V V V +R+PISL+ +
Sbjct: 450 VPVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPI 509
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + + +P P ++ E+ L+K+ V +L+ L RE +++R+ FGLDGD
Sbjct: 510 GEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQ 569
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+G ++RERIRQI AL +L+ LK ++
Sbjct: 570 TLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFL 609
[133][TOP]
>UniRef100_Q8DM59 Group2 RNA polymerase sigma factor n=1 Tax=Thermosynechococcus
elongatus BP-1 RepID=Q8DM59_THEEB
Length = 315
Score = 86.7 bits (213), Expect = 1e-15
Identities = 49/139 (35%), Positives = 83/139 (59%)
Frame = -3
Query: 539 KISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKE 360
KI +A L +RL R T +ELA L + + V ER+RQP+SLD V D + E
Sbjct: 167 KIKKAQRQLSQRLGRAATINELAAELELTPAQVREYLERARQPLSLDVRVGDNQDTELGE 226
Query: 359 IIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLK 180
++ ++PE+ + L++ + +L+ +L ++ ++ L FGL+ PL+ ++G++L
Sbjct: 227 LLEDS-SISPEEFATQSLLRSDLERLMAELTPQQRHVLSLRFGLENGQPLTLAKVGELLN 285
Query: 179 LSRERIRQIYGIALSKLQQ 123
+SRER+RQI ALSKL++
Sbjct: 286 ISRERVRQIEREALSKLRK 304
[134][TOP]
>UniRef100_A0QIP2 RNA polymerase sigma factor n=2 Tax=Mycobacterium avium
RepID=A0QIP2_MYCA1
Length = 319
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + + + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 219 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI +SKL+ D L+ Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIERDVMSKLRNGERADRLRSY 317
[135][TOP]
>UniRef100_Q4JVA6 RNA polymerase sigma factor n=1 Tax=Corynebacterium jeikeium K411
RepID=Q4JVA6_CORJK
Length = 544
Score = 86.7 bits (213), Expect = 1e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA +++ V V + + +R+PISLD+T+
Sbjct: 384 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVDKVLEIQQYAREPISLDQTI 443
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +V+L FGL P
Sbjct: 444 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLSEREAGVVKLRFGLTDGMPR 503
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 504 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 543
[136][TOP]
>UniRef100_B9L1K5 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L1K5_THERP
Length = 340
Score = 86.7 bits (213), Expect = 1e-15
Identities = 42/149 (28%), Positives = 85/149 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + + L + L R+PT +E+AE ++V + + +++ +SLD+ +
Sbjct: 179 LPVHMTDSITRYHRTTTQLAQELGRQPTPEEIAEAMSVQPEKIAQIVRAAQRAVSLDQPL 238
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++ + ++I + +PE++ E+ L+++ +A++L L RE +++L +GL P
Sbjct: 239 SEEDETSLGDLIADELAQSPEELAEESLMRRDIAEILEMLTPRERLVLQLRYGLSDGEPR 298
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
+ E+G +L +SRER+RQI AL KL++
Sbjct: 299 TLAEVGDLLGISRERVRQIENEALRKLRR 327
[137][TOP]
>UniRef100_B8HPM3 RNA polymerase sigma factor n=1 Tax=Cyanothece sp. PCC 7425
RepID=B8HPM3_CYAP4
Length = 378
Score = 86.7 bits (213), Expect = 1e-15
Identities = 49/160 (30%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + +L + + RKPT +E+A + + + + +++ ++ PISL+ +
Sbjct: 219 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 278
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E TPE V K L+++ + +L L+ RE +++L +GLD
Sbjct: 279 GKEEDSRLGDFIESDGE-TPEDQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMK 337
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 338 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 377
[138][TOP]
>UniRef100_A8M805 RNA polymerase sigma factor n=1 Tax=Salinispora arenicola CNS-205
RepID=A8M805_SALAI
Length = 532
Score = 86.7 bits (213), Expect = 1e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 372 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 431
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + ++L L++RE +VRL FGL P
Sbjct: 432 GDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRFGLTDGQPR 491
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 492 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 531
[139][TOP]
>UniRef100_A4X4Z1 RNA polymerase sigma factor n=1 Tax=Salinispora tropica CNB-440
RepID=A4X4Z1_SALTO
Length = 542
Score = 86.7 bits (213), Expect = 1e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 382 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 441
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + ++L L++RE +VRL FGL P
Sbjct: 442 GDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRFGLTDGQPR 501
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 502 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 541
[140][TOP]
>UniRef100_P77906 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
RepID=P77906_MYCTU
Length = 345
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + + + + E SR P+SLD V
Sbjct: 185 LPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPV 244
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 245 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 304
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI +SKL+ D L+ Y
Sbjct: 305 TLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 343
[141][TOP]
>UniRef100_C8RTJ4 RNA polymerase principal sigma factor SigA n=1 Tax=Corynebacterium
jeikeium ATCC 43734 RepID=C8RTJ4_CORJE
Length = 552
Score = 86.7 bits (213), Expect = 1e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA +++ V V + + +R+PISLD+T+
Sbjct: 392 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVDKVLEIQQYAREPISLDQTI 451
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +V+L FGL P
Sbjct: 452 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLSEREAGVVKLRFGLTDGMPR 511
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 512 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 551
[142][TOP]
>UniRef100_C8R003 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R003_9DELT
Length = 445
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/142 (35%), Positives = 84/142 (59%)
Frame = -3
Query: 515 LRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEIIPGPVEM 336
L K L R+PT E++E + + + + E SR+PISL+ V D + T + + +
Sbjct: 304 LLKELGREPTPAEISEKTGLPMEKILAIFEASREPISLETPVGD-DDSTLGDFLENQESV 362
Query: 335 TPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLKLSRERIRQ 156
+P + V+ + + V +L+ L+ REEKI+RL FG+ D + EEIGK +SRERIRQ
Sbjct: 363 SPYEAVKGNQLAERVTTILSTLSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIRQ 422
Query: 155 IYGIALSKLQQTTFVDSLKFYV 90
I AL++L+ ++ + LK ++
Sbjct: 423 IEKKALNRLRHSSRREKLKNFL 444
[143][TOP]
>UniRef100_C4RDI4 RNA polymerase sigma factor n=1 Tax=Micromonospora sp. ATCC 39149
RepID=C4RDI4_9ACTO
Length = 534
Score = 86.7 bits (213), Expect = 1e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 374 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 433
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + ++L L++RE +VRL FGL P
Sbjct: 434 GDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRFGLTDGQPR 493
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 494 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 533
[144][TOP]
>UniRef100_B9XGK9 RNA polymerase sigma factor n=1 Tax=bacterium Ellin514
RepID=B9XGK9_9BACT
Length = 352
Score = 86.7 bits (213), Expect = 1e-15
Identities = 48/149 (32%), Positives = 86/149 (57%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++K+ L++ L R+P+ +ELA+ LN++ V+ + + +P SLD +
Sbjct: 194 LPVHLVDKISKMRRTALKLQEILGREPSDEELADELNISAMRVSQMRTAAIRPASLDAPI 253
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + F E++ TP + +E++ + + + +L+ L+ RE I+R FGLDG
Sbjct: 254 GDEDSNNFAEVVQDENADTPYEQLEEKTVTKMLQELVKTLDPREATILRARFGLDGGNQK 313
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
+ EE+G+ ++RER+RQI IAL KL++
Sbjct: 314 TLEEVGQKFGVTRERVRQIQNIALKKLRK 342
[145][TOP]
>UniRef100_A5WQW2 RNA polymerase sigma factor n=9 Tax=Mycobacterium tuberculosis
complex RepID=A5WQW2_MYCTF
Length = 345
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + + + + E SR P+SLD V
Sbjct: 185 LPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPV 244
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 245 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 304
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI +SKL+ D L+ Y
Sbjct: 305 TLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSY 343
[146][TOP]
>UniRef100_A3UAL6 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Croceibacter
atlanticus HTCC2559 RepID=A3UAL6_9FLAO
Length = 287
Score = 86.7 bits (213), Expect = 1e-15
Identities = 51/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++ L + +R PT +E+A+ L + +S V + S + +S+D +
Sbjct: 127 LPLNKIGSINKINKMYAYLEQSNQRPPTPEEIAQELEMTISEVKESLKNSGRHLSMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D + +++ PEK + + ++ + + L L RE ++RLYFGL PL
Sbjct: 187 VDGEDSNLYDVLKFGESPNPEKDLLVESLQTEIDRALETLTPREADVIRLYFGLGQQQPL 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ +L+RER+RQI A +L+ T+ LK Y+
Sbjct: 247 TLEEIGETFELTRERVRQIKEKATRRLKHTSRSKILKTYL 286
[147][TOP]
>UniRef100_UPI0001B58588 RNA polymerase sigma factor n=1 Tax=Streptomyces sp. AA4
RepID=UPI0001B58588
Length = 476
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ ++++ V + + +R+PISLD+T+
Sbjct: 316 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTI 375
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 376 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQPR 435
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 436 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 475
[148][TOP]
>UniRef100_UPI0001B44D01 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis KZN
605 RepID=UPI0001B44D01
Length = 377
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 217 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 276
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 277 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 336
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 337 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 376
[149][TOP]
>UniRef100_UPI0001AF41EF RNA polymerase sigma factor n=1 Tax=Mycobacterium kansasii ATCC
12478 RepID=UPI0001AF41EF
Length = 518
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 358 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 417
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 418 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 477
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 478 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 517
[150][TOP]
>UniRef100_UPI000190610E RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis T17
RepID=UPI000190610E
Length = 530
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 370 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 429
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 430 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 489
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 490 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 529
[151][TOP]
>UniRef100_UPI00019014BB RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis
02_1987 RepID=UPI00019014BB
Length = 197
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 37 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 96
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 97 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 156
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 157 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 196
[152][TOP]
>UniRef100_B2HLZ7 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLZ7_MYCMM
Length = 501
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 341 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 400
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 401 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 460
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 461 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 500
[153][TOP]
>UniRef100_B1VDG3 RNA polymerase sigma factor n=1 Tax=Corynebacterium urealyticum DSM
7109 RepID=B1VDG3_CORU7
Length = 545
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA +++ V V + + +R+PISLD+T+
Sbjct: 385 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVDKVLEIQQYAREPISLDQTI 444
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +V+L FGL P
Sbjct: 445 GDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLSEREAGVVKLRFGLTDGMPR 504
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 505 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 544
[154][TOP]
>UniRef100_A0PT58 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
RepID=A0PT58_MYCUA
Length = 501
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 341 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 400
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 401 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 460
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 461 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 500
[155][TOP]
>UniRef100_Q60158 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis
RepID=Q60158_MYCBO
Length = 528
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 368 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 427
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 428 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 487
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 488 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
[156][TOP]
>UniRef100_Q1NXM5 RNA polymerase sigma factor n=1 Tax=delta proteobacterium MLMS-1
RepID=Q1NXM5_9DELT
Length = 442
Score = 86.3 bits (212), Expect = 2e-15
Identities = 51/142 (35%), Positives = 84/142 (59%)
Frame = -3
Query: 515 LRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEIIPGPVEM 336
L K L R+PT E++E + + + + E SR+PISL+ V D + T + + +
Sbjct: 301 LLKELGREPTPVEISEKTGLPMEKILAIFEASREPISLETPVGD-DDSTLGDFLENQESI 359
Query: 335 TPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLKLSRERIRQ 156
+P + V+ + + V +L+ L+ REEKI+RL FG+ D + EEIGK +SRERIRQ
Sbjct: 360 SPYEAVKGNQLAERVTTILSTLSPREEKIIRLRFGIGEDAEYTLEEIGKRFNVSRERIRQ 419
Query: 155 IYGIALSKLQQTTFVDSLKFYV 90
I AL++L+ ++ + LK ++
Sbjct: 420 IEKKALNRLRHSSRREKLKNFL 441
[157][TOP]
>UniRef100_C7MYK8 RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Saccharomonospora
viridis DSM 43017 RepID=C7MYK8_SACVD
Length = 439
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ ++++ V + + +R+PISLD+T+
Sbjct: 279 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQTI 338
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 339 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQPR 398
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 399 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 438
[158][TOP]
>UniRef100_C4EN68 RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum DSM
43021 RepID=C4EN68_STRRS
Length = 331
Score = 86.3 bits (212), Expect = 2e-15
Identities = 51/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K++ + L R+P+ ELA L++ V +T V + R+PISL +
Sbjct: 171 IPVHMVEVINKVARVQRQMMVTLGREPSPQELAVELDMTVEKITEVQKYGREPISLHTPL 230
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
G+ F ++I + PE+ V L+++ + +L L++RE ++RL FGL P
Sbjct: 231 GAEGDAEFGDVIEDSEAILPEEAVTFILLQRQLHAVLEALSEREAGVMRLRFGLADGQPK 290
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIGKV ++RERIRQI +SKL+ +L+ Y+
Sbjct: 291 TLDEIGKVFGVTRERIRQIESKTMSKLRHPARARALRDYL 330
[159][TOP]
>UniRef100_C4CVR1 RNA polymerase sigma factor, sigma-70 family n=1 Tax=Spirosoma
linguale DSM 74 RepID=C4CVR1_9SPHI
Length = 287
Score = 86.3 bits (212), Expect = 2e-15
Identities = 48/160 (30%), Positives = 91/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G + KIS+ + L ++ R+P+ +ELA VL ++ + V + S + +S+D
Sbjct: 127 LPLNRVGSLNKISKTFSDLEQKFEREPSPEELAAVLEISAAEVVDTLKISGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ +++ E P+ + +++ V + L+ L +RE ++ LYFGL+G+ +
Sbjct: 187 VQGEENSLLDVLENDGEDKPDSGLINDSLRKEVQRALSTLTQREADVITLYFGLNGEHAM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T+ +LK Y+
Sbjct: 247 TLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKTYL 286
[160][TOP]
>UniRef100_C2APF0 RNA polymerase sigma factor n=1 Tax=Tsukamurella paurometabola DSM
20162 RepID=C2APF0_TSUPA
Length = 483
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 323 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 382
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 383 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 442
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 443 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 482
[161][TOP]
>UniRef100_C0U5P4 RNA polymerase sigma factor n=1 Tax=Geodermatophilus obscurus DSM
43160 RepID=C0U5P4_9ACTO
Length = 327
Score = 86.3 bits (212), Expect = 2e-15
Identities = 55/160 (34%), Positives = 82/160 (51%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K+ + + L R+PT +EL L++ +T + E SR +SLD+TV
Sbjct: 167 LPVHLAEQVNKVVRTRRRIHQELEREPTAEELGLELDMTPERITELLEYSRDLVSLDQTV 226
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I E V Q++K V +L+ L +RE +V L FGLDG P
Sbjct: 227 GADEESRLGDFIEDADAAVAEDAVAFQMMKGDVRNVLSTLEERERDVVVLRFGLDGGQPR 286
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ E+IGK LSRER+RQI ++KL+ D+L+ Y+
Sbjct: 287 TLEQIGKQFGLSRERVRQIERETMAKLRDPQRADALRDYL 326
[162][TOP]
>UniRef100_B0MPW5 RNA polymerase sigma factor n=1 Tax=Eubacterium siraeum DSM 15702
RepID=B0MPW5_9FIRM
Length = 358
Score = 86.3 bits (212), Expect = 2e-15
Identities = 48/160 (30%), Positives = 85/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + ++ L +PT E+A+ L + V V + S+ P+SL+ +
Sbjct: 198 IPVHMVETITKVKKVSSQLLHENGHEPTPQEIADRLGITVDRVREILRISQDPVSLETPI 257
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P + + L+K+ ++++L L REEK++RL FGL+ P
Sbjct: 258 GEEEDSHLGDFIPDEDAPAPAEAASRTLLKEQLSEILGTLTPREEKVLRLRFGLEDGRPR 317
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK ++
Sbjct: 318 TLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDFL 357
[163][TOP]
>UniRef100_A8SMX7 RNA polymerase sigma factor n=1 Tax=Parvimonas micra ATCC 33270
RepID=A8SMX7_9FIRM
Length = 382
Score = 86.3 bits (212), Expect = 2e-15
Identities = 45/160 (28%), Positives = 90/160 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ L + L R+PT +E++E + + V V + + +++P+SL+ +
Sbjct: 222 IPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVDKVNEIRKIAQEPVSLETPI 281
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + I + P++ ++K+ + ++L+ L+ RE+K++ L FGL+ TP
Sbjct: 282 GEEDDSHLGDFIEDETAIAPDEAANFSMLKEQLNQVLSTLSDREKKVLELRFGLNDGTPR 341
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK +++RERIRQI AL KL+ + LK ++
Sbjct: 342 TLEEVGKEFEVTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
[164][TOP]
>UniRef100_A2VL47 RNA polymerase sigma factor n=1 Tax=Mycobacterium tuberculosis C
RepID=A2VL47_MYCTU
Length = 528
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 368 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 427
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 428 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 487
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 488 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
[165][TOP]
>UniRef100_P0A603 RNA polymerase sigma factor rpoD n=7 Tax=Mycobacterium tuberculosis
complex RepID=RPOD_MYCBO
Length = 528
Score = 86.3 bits (212), Expect = 2e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 368 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 427
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 428 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 487
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 488 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
[166][TOP]
>UniRef100_UPI0001B45B4B RNA polymerase sigma factor n=1 Tax=Mycobacterium intracellulare
ATCC 13950 RepID=UPI0001B45B4B
Length = 488
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 328 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 387
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 388 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 447
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 448 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 487
[167][TOP]
>UniRef100_UPI0001AEF979 putative RNA polymerase principal sigma factor n=1 Tax=Streptomyces
roseosporus NRRL 15998 RepID=UPI0001AEF979
Length = 363
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLRRK---PTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
+V I+ V R+ L+ + PT +++A L++ VT V +++P+SL V +
Sbjct: 207 VVELINRVVRVQRRLLQERGVEPTAEDIAVELDLTPERVTEVLRLAQEPVSLHAPVGEED 266
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+++F ++I +P + L++Q + +L+ L +RE K+V+L +GLD P + EE
Sbjct: 267 DVSFGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEE 326
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
IG++ ++RERIRQI LS+L+ F D L+ Y+
Sbjct: 327 IGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYL 362
[168][TOP]
>UniRef100_Q896X6 RNA polymerase sigma factor n=1 Tax=Clostridium tetani
RepID=Q896X6_CLOTE
Length = 282
Score = 85.9 bits (211), Expect = 2e-15
Identities = 51/160 (31%), Positives = 88/160 (55%), Gaps = 1/160 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P +++K+ L + L R+PT +E+AE +++ + + S+ P+SL+ V
Sbjct: 122 IPVHMNEVISKMIRTKKKLEQELDREPTEEEIAETAEISIEKIKRIYNVSQDPVSLETPV 181
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGD-TP 213
+ + + I PE V +Q++ ++ +L+ L+ REE+IVRL +GL GD
Sbjct: 182 GENEDTILQNFISDD-RYLPEDKVTEQMLGDTLSNVLSTLSPREERIVRLRYGLVGDGES 240
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ EEIG+ L+RERIRQI A+ KL+ T + L+ Y
Sbjct: 241 RTLEEIGREFNLTRERIRQIEARAIRKLRHPTRIKKLQGY 280
[169][TOP]
>UniRef100_Q7UF51 RNA polymerase sigma factor n=1 Tax=Rhodopirellula baltica
RepID=Q7UF51_RHOBA
Length = 519
Score = 85.9 bits (211), Expect = 2e-15
Identities = 49/145 (33%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
MV +S NV R+ L+ R+P+ +E A +V + V SR PISLD+ V +
Sbjct: 363 MVETMSRVRNVARQLLQELGREPSIEETARRADVTIEEARRVLTMSRFPISLDRPVGNSE 422
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ F +++P +P+ +++++Q + +L L+ RE +I++L +GL + EE
Sbjct: 423 DSQFGDLLPDGTAESPQIGATQEMLRQRITGVLKSLSYREREIIKLRYGLGDGYSYTLEE 482
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQ 123
+G + K++RERIRQI A+ KLQQ
Sbjct: 483 VGHIFKVTRERIRQIEAKAVRKLQQ 507
[170][TOP]
>UniRef100_Q5YT84 RNA polymerase sigma factor n=1 Tax=Nocardia farcinica
RepID=Q5YT84_NOCFA
Length = 454
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 294 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 353
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 354 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 413
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 414 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 453
[171][TOP]
>UniRef100_Q47Q24 RNA polymerase sigma factor n=1 Tax=Thermobifida fusca YX
RepID=Q47Q24_THEFY
Length = 438
Score = 85.9 bits (211), Expect = 2e-15
Identities = 52/148 (35%), Positives = 83/148 (56%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP +++K+S + + L R+PT DELA+ L + + + +RQPISLD T+
Sbjct: 278 LPVHVLELLSKLSRLERDMHQTLGREPTPDELAQELGKTPAQIEELLRITRQPISLDSTI 337
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G ++I ++V++QL+ + + L+ L RE I+ L FGL P
Sbjct: 338 GEDGETRIGDLIEDVDASEASEVVDRQLMADQLRRALDDLEPREATIMSLRFGLFDGRPR 397
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ +EIGK L L+RERIRQ+ +LSKL+
Sbjct: 398 TLDEIGKHLGLTRERIRQLEKQSLSKLR 425
[172][TOP]
>UniRef100_Q0S1J1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
RepID=Q0S1J1_RHOSR
Length = 457
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 297 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 356
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 357 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 416
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 417 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
[173][TOP]
>UniRef100_C0ZYT9 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis PR4
RepID=C0ZYT9_RHOE4
Length = 452
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 292 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 351
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 352 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 411
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 412 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 451
[174][TOP]
>UniRef100_B8ZQV8 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV8_MYCLB
Length = 574
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 414 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 473
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 474 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 533
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 534 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 573
[175][TOP]
>UniRef100_B8I6N1 RNA polymerase sigma factor n=1 Tax=Clostridium cellulolyticum H10
RepID=B8I6N1_CLOCE
Length = 359
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+P DE+A+ + ++V V + + S++P+SL+ +
Sbjct: 199 IPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPI 258
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P + L+K+ + +L+ L REEK++RL FGLD
Sbjct: 259 GEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTPREEKVLRLRFGLDDGRAR 318
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK Y+
Sbjct: 319 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
[176][TOP]
>UniRef100_B1MCW6 RNA polymerase sigma factor n=1 Tax=Mycobacterium abscessus ATCC
19977 RepID=B1MCW6_MYCA9
Length = 467
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 307 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 366
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 367 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 426
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 427 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 466
[177][TOP]
>UniRef100_A4TCR0 RNA polymerase sigma factor n=1 Tax=Mycobacterium gilvum PYR-GCK
RepID=A4TCR0_MYCGI
Length = 488
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 328 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 387
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 388 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 447
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 448 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 487
[178][TOP]
>UniRef100_A3PYI3 RNA polymerase sigma factor n=1 Tax=Mycobacterium sp. JLS
RepID=A3PYI3_MYCSJ
Length = 480
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 320 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 379
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 380 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 439
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 440 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 479
[179][TOP]
>UniRef100_A3DDV0 RNA polymerase sigma factor n=1 Tax=Clostridium thermocellum ATCC
27405 RepID=A3DDV0_CLOTH
Length = 358
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+P +E+A+ +N+ V V + + S++P+SL+ +
Sbjct: 198 IPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPI 257
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P + L+K+ + +L+ L REEK++RL FGLD
Sbjct: 258 GEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRAR 317
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK Y+
Sbjct: 318 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[180][TOP]
>UniRef100_A1UF21 RNA polymerase sigma factor n=2 Tax=Mycobacterium
RepID=A1UF21_MYCSK
Length = 480
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 320 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 379
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 380 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 439
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 440 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 479
[181][TOP]
>UniRef100_A1T7X4 RNA polymerase sigma factor n=1 Tax=Mycobacterium vanbaalenii PYR-1
RepID=A1T7X4_MYCVP
Length = 478
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 318 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 377
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 378 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 437
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 438 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 477
[182][TOP]
>UniRef100_A0QIN4 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium 104
RepID=A0QIN4_MYCA1
Length = 496
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 336 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 395
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 396 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 455
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 456 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 495
[183][TOP]
>UniRef100_Q9S5K3 RNA polymerase sigma factor n=1 Tax=Mycobacterium leprae
RepID=Q9S5K3_MYCLE
Length = 576
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 416 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 475
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 476 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 535
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 536 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 575
[184][TOP]
>UniRef100_Q8VM92 RNA polymerase sigma factor n=1 Tax=Rhodococcus fascians
RepID=Q8VM92_RHOFA
Length = 474
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 314 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 373
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 374 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 433
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 434 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 473
[185][TOP]
>UniRef100_A0QW02 RNA polymerase sigma factor n=2 Tax=Mycobacterium smegmatis
RepID=A0QW02_MYCS2
Length = 466
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 306 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 365
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 366 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 425
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 426 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 465
[186][TOP]
>UniRef100_Q59502 RNA polymerase sigma factor n=1 Tax=Mycobacterium bovis
RepID=Q59502_MYCBO
Length = 528
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 368 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 427
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 428 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPR 487
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL + L+ Y+
Sbjct: 488 TLDEIGQVYGVTRERIRQIESKTMSKLHHPSRSQVLRDYL 527
[187][TOP]
>UniRef100_C7IFS3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium papyrosolvens DSM 2782
RepID=C7IFS3_9CLOT
Length = 359
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+P DE+A+ + ++V V + + S++P+SL+ +
Sbjct: 199 IPVHMVETINKLIRVSRQLLQELGREPQPDEIAKEIGMSVDKVREIMKISQEPVSLETPI 258
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P + L+K+ + +L+ L REEK++RL FGLD
Sbjct: 259 GEEEDSHLGDFIPDDDAPAPAEAAAFTLLKEQLIDVLDTLTAREEKVLRLRFGLDDGRAR 318
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK Y+
Sbjct: 319 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
[188][TOP]
>UniRef100_C7HEX3 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Clostridium thermocellum DSM 2360 RepID=C7HEX3_CLOTM
Length = 358
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+P +E+A+ +N+ V V + + S++P+SL+ +
Sbjct: 198 IPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEKVREIMKISQEPVSLETPI 257
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P + L+K+ + +L+ L REEK++RL FGLD
Sbjct: 258 GEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTPREEKVLRLRFGLDDGRAR 317
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + LK Y+
Sbjct: 318 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
[189][TOP]
>UniRef100_C1B466 RNA polymerase sigma factor n=2 Tax=Rhodococcus opacus
RepID=C1B466_RHOOB
Length = 457
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 297 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 356
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 357 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 416
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 417 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
[190][TOP]
>UniRef100_C3JLL5 RNA polymerase sigma factor n=1 Tax=Rhodococcus erythropolis SK121
RepID=C3JLL5_RHOER
Length = 430
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 270 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 329
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 330 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 389
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 390 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 429
[191][TOP]
>UniRef100_C0UQ51 RNA polymerase sigma factor n=1 Tax=Gordonia bronchialis DSM 43247
RepID=C0UQ51_9ACTO
Length = 489
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 329 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 388
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 389 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPR 448
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 449 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 488
[192][TOP]
>UniRef100_C0U2T9 RNA polymerase sigma factor n=1 Tax=Geodermatophilus obscurus DSM
43160 RepID=C0U2T9_9ACTO
Length = 429
Score = 85.9 bits (211), Expect = 2e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 269 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTI 328
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 329 GDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDGQPR 388
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 389 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 428
[193][TOP]
>UniRef100_A6CE36 RNA polymerase sigma factor n=1 Tax=Planctomyces maris DSM 8797
RepID=A6CE36_9PLAN
Length = 588
Score = 85.9 bits (211), Expect = 2e-15
Identities = 47/160 (29%), Positives = 85/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + ++ + + +R+ R+PT +ELA+ + + V + + + PISLD V
Sbjct: 397 IPVHMFQSISTLKARSEQIRQETGREPTMEELADSVGLGVEETERIMKTWKHPISLDTPV 456
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +F + + E +P ++++K + +L L RE +I+RL +GL
Sbjct: 457 GESEDSSFGDFLEDGHESSPADAAMREMLKDKIEHVLKSLTYREREIIRLRYGLGDGYSY 516
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE G++ K++RERIRQI AL KLQ T L+ +V
Sbjct: 517 TLEETGRIFKVTRERIRQIESKALRKLQHQTRSAHLRGFV 556
[194][TOP]
>UniRef100_UPI000185C388 RNA polymerase sigma factor A n=1 Tax=Corynebacterium amycolatum
SK46 RepID=UPI000185C388
Length = 520
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 360 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITEEKVLEIQQYAREPISLDQTI 419
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 420 GDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLGDVLETLSEREAGVVRLRFGLTDGMPR 479
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 480 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 519
[195][TOP]
>UniRef100_Q7VD88 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus
RepID=Q7VD88_PROMA
Length = 438
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 279 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 338
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E PE V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 339 GKEEDSRLGDFIESDSE-NPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 397
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 398 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 437
[196][TOP]
>UniRef100_Q7ND77 RNA polymerase sigma factor n=1 Tax=Gloeobacter violaceus
RepID=Q7ND77_GLOVI
Length = 344
Score = 85.5 bits (210), Expect = 3e-15
Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 4/157 (2%)
Frame = -3
Query: 548 MVAKISEANNVLRK---RLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
MV K+ + +R L R+P+ DELA L + V + + E SRQP+SLD V G
Sbjct: 187 MVEKVRKVRREMRMATLELGRRPSEDELASRLAIKVKKLRTIQEVSRQPVSLDMPVGSEG 246
Query: 377 NLTFKEII-PGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFE 201
+++ E+I G E +++V+K L + A +N L E +++ L FGL G+ L+
Sbjct: 247 DISLGEMIEDGTAERPFDELVQKALASELYA-AMNVLKPVEREVLALRFGLKGEEGLTLR 305
Query: 200 EIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
E+G+ L+RERIRQI AL KL+++ L+ YV
Sbjct: 306 EVGERFDLTRERIRQIESEALRKLRRSKRKQILQQYV 342
[197][TOP]
>UniRef100_Q3B0L4 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. CC9902
RepID=Q3B0L4_SYNS9
Length = 332
Score = 85.5 bits (210), Expect = 3e-15
Identities = 49/153 (32%), Positives = 89/153 (58%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLT 369
M+ K+ + L + L R PT ELA+ +++ V + R+RQP+SL+ V D +
Sbjct: 181 MLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEVKDLMCRARQPVSLEMKVGDGDDTE 240
Query: 368 FKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGK 189
E++ G E+ P VE+ +K + LL +L +E+++R+ FG+DG+ P+S IG+
Sbjct: 241 LLELLSGDNEL-PSDQVEEDCLKGDLRSLLGQLPHLQEQVLRMRFGMDGEDPMSLTGIGR 299
Query: 188 VLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+L +SR+R+R + L+ L++ + D ++ YV
Sbjct: 300 ILGMSRDRVRNLERDGLAGLRRVS--DQVEAYV 330
[198][TOP]
>UniRef100_C0QRZ3 RNA polymerase sigma factor n=1 Tax=Persephonella marina EX-H1
RepID=C0QRZ3_PERMH
Length = 577
Score = 85.5 bits (210), Expect = 3e-15
Identities = 49/144 (34%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Frame = -3
Query: 548 MVAKISEANNVLR---KRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
M+ I++ V R + L R+PT +E+A+ + + V + S++PISL+ + D
Sbjct: 420 MIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEKVRKILRTSQEPISLETPIGDDD 479
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ I M+PE+ V +Q ++Q + ++L+ L++REE+++R FGL+ DT + E+
Sbjct: 480 ESHLGDFIEDKTVMSPEQHVLRQALRQQLEEVLSTLSEREEQVLRYRFGLEDDTEYTLEQ 539
Query: 197 IGKVLKLSRERIRQIYGIALSKLQ 126
+GK ++RERIRQI AL KL+
Sbjct: 540 VGKKFGVTRERIRQIEAKALRKLR 563
[199][TOP]
>UniRef100_A9BEB7 RNA polymerase sigma factor n=1 Tax=Prochlorococcus marinus str.
MIT 9211 RepID=A9BEB7_PROM4
Length = 425
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y +++I + VL + RKP+ +E+AE + + + + +++ ++ PISL+ +
Sbjct: 266 LPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPI 325
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E PE V K L+++ + +L L+ RE ++RL +GLD
Sbjct: 326 GKEEDSRLGDFIESDSE-NPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMK 384
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG++ ++RERIRQI AL KL+ LK Y+
Sbjct: 385 TLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 424
[200][TOP]
>UniRef100_A9B4B0 RNA polymerase sigma factor n=1 Tax=Herpetosiphon aurantiacus ATCC
23779 RepID=A9B4B0_HERA2
Length = 400
Score = 85.5 bits (210), Expect = 3e-15
Identities = 45/136 (33%), Positives = 81/136 (59%)
Frame = -3
Query: 497 RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEIIPGPVEMTPEKMV 318
R+P+ +ELA+ L++ V V + + S +P+SL+ V + + +P P
Sbjct: 264 REPSDEELAQALDLTVEKVRSIRKTSMEPVSLETPVGQEEDSQLGDFLPDEKLEAPSDAA 323
Query: 317 EKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLKLSRERIRQIYGIAL 138
Q++++ VA++L++L +RE+++++L FGL+ T + EE+GK ++RERIRQI AL
Sbjct: 324 SHQMLREQVAQVLDQLTEREKRVLKLRFGLEDGTQRTLEEVGKEFGVTRERIRQIEVKAL 383
Query: 137 SKLQQTTFVDSLKFYV 90
KL+ F L+ Y+
Sbjct: 384 RKLRHPRFGKKLRDYL 399
[201][TOP]
>UniRef100_Q062S3 RNA polymerase sigma factor n=1 Tax=Synechococcus sp. BL107
RepID=Q062S3_9SYNE
Length = 332
Score = 85.5 bits (210), Expect = 3e-15
Identities = 49/153 (32%), Positives = 89/153 (58%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLT 369
M+ K+ + L + L R PT ELA+ +++ V + R+RQP+SL+ V D +
Sbjct: 181 MLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEVKDLMCRARQPVSLEMKVGDGDDTE 240
Query: 368 FKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGK 189
E++ G E+ P VE+ +K + LL +L +E+++R+ FG+DG+ P+S IG+
Sbjct: 241 LLELLSGDNEL-PSDQVEEDCLKGDLRSLLGQLPHLQEQVLRMRFGMDGEDPMSLTGIGR 299
Query: 188 VLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+L +SR+R+R + L+ L++ + D ++ YV
Sbjct: 300 ILGMSRDRVRNLERDGLAGLRRVS--DQVEAYV 330
[202][TOP]
>UniRef100_P77841 RNA polymerase sigma factor n=1 Tax=Chloroflexus aurantiacus
RepID=P77841_CHLAU
Length = 312
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/152 (32%), Positives = 83/152 (54%)
Frame = -3
Query: 545 VAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTF 366
++++S L ++L R+PT +ELA + P SLD+ T+ G
Sbjct: 158 LSRLSRLRQELSQQLDREPTLEELAAGCRPERRAGRTAEQAGLAPTSLDEPHTEDGGGAL 217
Query: 365 KEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKV 186
EI+ P++ TP V + +++ V L +L+ RE I+RL +GLDG+ + E+IG+
Sbjct: 218 AEILTDPLQPTPFDEVSESMLQADVQHALQQLSPRERSILRLRYGLDGEPMHTLEQIGQR 277
Query: 185 LKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
L+L+RER+RQ+ AL KL+ + L+ YV
Sbjct: 278 LRLTRERVRQLEHEALRKLRDPSLHPQLQGYV 309
[203][TOP]
>UniRef100_C8XG60 RNA polymerase, sigma 70 subunit, RpoD subfamily n=1
Tax=Nakamurella multipartita DSM 44233
RepID=C8XG60_9ACTO
Length = 448
Score = 85.5 bits (210), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 288 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLDQTI 347
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 348 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQAVLQTLSEREAGVVRLRFGLTDGQPR 407
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 408 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 447
[204][TOP]
>UniRef100_C4DZ35 RNA polymerase sigma factor n=1 Tax=Streptobacillus moniliformis
DSM 12112 RepID=C4DZ35_9FUSO
Length = 379
Score = 85.5 bits (210), Expect = 3e-15
Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + KI +A+ + + ++PT D LAE++ + V V + E ++ PISL+ V
Sbjct: 218 IPVHMIETINKIKKASRIHLQETGKEPTDDYLAEIVEMPVEKVKNILEMNQDPISLETPV 277
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNK-LNKREEKIVRLYFGLDGDTP 213
+ + + + P + + ++K+ + +L K LN+REE+++RL +GLD P
Sbjct: 278 GSEDDSELGDFVEDDKFLNPHEATVRSVLKEKLNDVLRKELNEREEQVLRLRYGLDDGAP 337
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ EE+GK+ ++RERIRQI A++KL+
Sbjct: 338 KTLEEVGKIFDVTRERIRQIEVKAINKLK 366
[205][TOP]
>UniRef100_B0AAF1 RNA polymerase sigma factor n=1 Tax=Clostridium bartlettii DSM
16795 RepID=B0AAF1_9CLOT
Length = 306
Score = 85.5 bits (210), Expect = 3e-15
Identities = 47/151 (31%), Positives = 87/151 (57%)
Frame = -3
Query: 545 VAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTF 366
+ K+S ++ L K L R+P +E+A+ ++V V V V S++P S++ T+ +
Sbjct: 151 INKVSTISSQLAKELGREPKPEEIAKRMHVPVEKVVQVIRISQRPQSIESTIGQEDDTEL 210
Query: 365 KEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKV 186
+++IP +PE++V + L+K + +L+ L++RE+ +++L FGL + EE+G+
Sbjct: 211 EQVIPDKEAHSPEEIVTRSLLKDQIEYVLDTLSEREKGVIKLRFGLGDGEKKTLEEVGRA 270
Query: 185 LKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
++RER RQI AL KL + + L Y
Sbjct: 271 FNVTRERARQIEKKALRKLAHPSRSNKLLDY 301
[206][TOP]
>UniRef100_A2TVH6 Putative sigma factor A n=1 Tax=Dokdonia donghaensis MED134
RepID=A2TVH6_9FLAO
Length = 287
Score = 85.5 bits (210), Expect = 3e-15
Identities = 49/160 (30%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++ L + R P+ +E+A+ L++ + V + S + IS+D +
Sbjct: 127 LPLNKIGSINKINKTFAFLEQANERPPSPEEIAKELDMTIKDVKESLKNSGRHISMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +++ P++ + + +K + + L L RE +VRLYFGL P+
Sbjct: 187 VEGEDSNLYDVLNSGESPNPDRALLHESLKTEIERALETLTPREADVVRLYFGLGDQRPM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
S EEIG+ L+RER+RQI A+ +L+ T+ LK Y+
Sbjct: 247 SLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
[207][TOP]
>UniRef100_UPI0001966A7F hypothetical protein SUBVAR_00647 n=1 Tax=Subdoligranulum variabile
DSM 15176 RepID=UPI0001966A7F
Length = 364
Score = 85.1 bits (209), Expect = 3e-15
Identities = 47/160 (29%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + ++ L P+ +E+AE L+++V V + +++P+SL+ +
Sbjct: 204 IPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKVREIMRVAQEPVSLETPI 263
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + IP P + + L+K+ +A +L L REEK++RL FGL+ P
Sbjct: 264 GEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLKTLTPREEKVLRLRFGLEDGRPR 323
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GK ++RERIRQI AL KL+ + L+ ++
Sbjct: 324 TLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 363
[208][TOP]
>UniRef100_C4LJ13 RNA polymerase sigma factor n=1 Tax=Corynebacterium kroppenstedtii
DSM 44385 RepID=C4LJ13_CORK4
Length = 326
Score = 85.1 bits (209), Expect = 3e-15
Identities = 52/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K+S + + L R+ T +ELAE ++ S + L+ ++SR P+SLD V
Sbjct: 167 LPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESGIDESKIDLLLKQSRDPVSLDMPV 226
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I E+ V L + +L L KRE+ ++RL FGLD P
Sbjct: 227 GTDEEAPLGDFIEDSEATDAEEAVVASLRHSDIRTVLATLEKREQDVIRLRFGLDDGVPR 286
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IG+ LSRER+RQI ++KL++ D L+ Y
Sbjct: 287 TLDQIGREFGLSRERVRQIEREVMAKLRKGERADKLRSY 325
[209][TOP]
>UniRef100_C4LJ07 RNA polymerase sigma factor n=1 Tax=Corynebacterium kroppenstedtii
DSM 44385 RepID=C4LJ07_CORK4
Length = 621
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/160 (31%), Positives = 85/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA +++ V + + +R+PISLD+T+
Sbjct: 461 IPVHMVEVINKLGRIQRELLQDLSREPTPEELAREMDITEDKVLEIQQYAREPISLDQTI 520
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L +RE +VRL FGL P
Sbjct: 521 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLKTLTEREAGVVRLRFGLTDGMPR 580
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 581 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 620
[210][TOP]
>UniRef100_B2HLY9 RNA polymerase sigma factor n=1 Tax=Mycobacterium marinum M
RepID=B2HLY9_MYCMM
Length = 333
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/159 (32%), Positives = 80/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + V + + E SR P+SLD V
Sbjct: 173 LPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPV 232
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 233 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 292
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI + KL+ D L+ Y
Sbjct: 293 TLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 331
[211][TOP]
>UniRef100_A7NN98 RNA polymerase sigma factor n=1 Tax=Roseiflexus castenholzii DSM
13941 RepID=A7NN98_ROSCS
Length = 348
Score = 85.1 bits (209), Expect = 3e-15
Identities = 49/148 (33%), Positives = 82/148 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V ++ + L + L R+PT +E+A L + V E SR+P+SL+ V
Sbjct: 188 LPVHMSESVGQVKRTADRLAQALERQPTPEEIATALGQPTERIERVLEASRRPVSLETPV 247
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G T + + TP + +QL+++ +A L++LN+RE +I+ L +GL
Sbjct: 248 GEDGEHTLGDFLQDSELPTPVEAASQQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRR 307
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ EE+G+VL ++RER RQI AL +L+
Sbjct: 308 TLEEVGRVLGMTRERARQIEAEALRRLR 335
[212][TOP]
>UniRef100_A4FAP1 RNA polymerase sigma factor n=1 Tax=Saccharopolyspora erythraea
NRRL 2338 RepID=A4FAP1_SACEN
Length = 467
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 307 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 366
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 367 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPR 426
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 427 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 466
[213][TOP]
>UniRef100_A4FAM7 RNA polymerase sigma factor n=1 Tax=Saccharopolyspora erythraea
NRRL 2338 RepID=A4FAM7_SACEN
Length = 324
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V KI+ L ++L R+ T +ELA + V V + + SR P+SLD V
Sbjct: 164 LPVHLVEQVNKIARIKRDLHQKLGREATDEELANEAGLTVEKVADLLDHSRDPVSLDMPV 223
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I E V ++ + ++L+ L +RE+ ++R+ +GLD P
Sbjct: 224 GAEEDAPLGDFIEDAESADAENAVISGFLQDDLRRVLSTLEEREQAVIRMRYGLDDGQPR 283
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK LSRER+RQI +SKL+Q D L+ Y
Sbjct: 284 TLDQIGKAFGLSRERVRQIEREVMSKLRQGDRADKLRAY 322
[214][TOP]
>UniRef100_C8NU63 RNA polymerase principal sigma factor SigA n=1 Tax=Corynebacterium
genitalium ATCC 33030 RepID=C8NU63_9CORY
Length = 536
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT ELA+ +++ V + + +R+PISLD+T+
Sbjct: 376 IPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTI 435
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 436 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLSEREAGVVRLRFGLTDGMPR 495
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 496 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 535
[215][TOP]
>UniRef100_C6WAJ3 RNA polymerase sigma factor n=1 Tax=Actinosynnema mirum DSM 43827
RepID=C6WAJ3_ACTMD
Length = 435
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT +ELA+ +++ V + + +R+PISLD+T+
Sbjct: 275 IPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTI 334
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 335 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQPR 394
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 395 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 434
[216][TOP]
>UniRef100_C0XSL9 RNA polymerase sigma factor n=1 Tax=Corynebacterium lipophiloflavum
DSM 44291 RepID=C0XSL9_9CORY
Length = 520
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/160 (31%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT ELA+ +++ V + + +R+PISLD+T+
Sbjct: 360 IPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTI 419
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L+ L++RE +VRL FGL P
Sbjct: 420 GDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLSEREAGVVRLRFGLTDGMPR 479
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 480 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 519
[217][TOP]
>UniRef100_C0W1T8 RNA polymerase sigma factor n=1 Tax=Actinomyces coleocanis DSM
15436 RepID=C0W1T8_9ACTO
Length = 505
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K++ + + L R+PT +ELA+ L++ V V + R+PISL +
Sbjct: 345 IPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPL 404
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G+ F ++I + P V L+++ + K+L+ L++RE +V + FGL P
Sbjct: 405 GEDGDSEFGDLIEDSEAIVPTDAVSFTLLQEQLHKVLDTLSEREAGVVSMRFGLGDGQPK 464
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIGKV ++RERIRQI +SKL+ + L+ Y+
Sbjct: 465 TLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 504
[218][TOP]
>UniRef100_A9DMX0 RNA polymerase sigma-70 factor n=1 Tax=Kordia algicida OT-1
RepID=A9DMX0_9FLAO
Length = 287
Score = 85.1 bits (209), Expect = 3e-15
Identities = 48/160 (30%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++ L + R P+ +E+A+ L++ V+ V + S + +S+D +
Sbjct: 127 LPLNKIGSINKINKTFAYLEQSHERIPSAEEIAKELDMTVNDVKESMKNSGRHVSMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +++ P+K + + +K + + L L RE ++RLYFGL P+
Sbjct: 187 VEGEDSNLYDVLNSGESPNPDKELLHESLKTEIERALETLTPREADVIRLYFGLGNQHPM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI A+ +L+ T+ LK Y+
Sbjct: 247 TLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
[219][TOP]
>UniRef100_A6ENE0 RNA polymerase sigma-70 factor n=1 Tax=unidentified eubacterium
SCB49 RepID=A6ENE0_9BACT
Length = 287
Score = 85.1 bits (209), Expect = 3e-15
Identities = 47/160 (29%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++A L + +R P+ +E+A+ L++ ++ V + S + IS+D +
Sbjct: 127 LPLNKIGSINKINKAFTHLEQAHQRPPSPEEIAKELDMTINDVKESIKNSGRSISMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
T+ + +++ P++ + + ++ + + L L RE +++LYFGL P+
Sbjct: 187 TEGEDYNLYDVLNTGESPNPDQALLLESLRTEIERALETLTPRESDVIKLYFGLSDQRPM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG L+RER+RQI A+ +L+ T+ LK Y+
Sbjct: 247 TLEEIGSTFDLTRERVRQIKEKAVRRLKHTSRSTILKTYL 286
[220][TOP]
>UniRef100_A4BN42 RNA polymerase sigma factor n=1 Tax=Nitrococcus mobilis Nb-231
RepID=A4BN42_9GAMM
Length = 609
Score = 85.1 bits (209), Expect = 3e-15
Identities = 51/156 (32%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
M+ I++ N R+ L+ R+P DELAE + + V V + +++PIS++ + D
Sbjct: 451 MIETINKLNRTSRQMLQEMGREPQPDELAERMEMPEDKVRKVLKIAKEPISMETPIGDDE 510
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ + I M+P ++ +K+ V ++L L RE K++R+ FG+D +T + EE
Sbjct: 511 DSHLGDFIEDAAVMSPVDSATREGLKESVREVLAGLTPREAKVLRMRFGIDMNTDHTLEE 570
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+GK ++RERIRQI AL KL+ T +SL+ ++
Sbjct: 571 VGKQFDVTRERIRQIEAKALRKLRHPTRSESLRSFL 606
[221][TOP]
>UniRef100_P52328 RNA polymerase sigma factor rpoD n=1 Tax=Bacillus sp.
RepID=RPSD2_BACSP
Length = 377
Score = 85.1 bits (209), Expect = 3e-15
Identities = 48/160 (30%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ + L + L R+PT +E+A + ++V V + + +++P+SL+ +
Sbjct: 217 IPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMELSVEKVREIMKIAQEPVSLETPI 276
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + I +TP +L+K+ + +L+ L +REE ++RL FGLD
Sbjct: 277 GEEDDSHLGDFIEDQEALTPADAAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTR 336
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+GKV ++RERIRQI AL KL+ + LK ++
Sbjct: 337 TLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
[222][TOP]
>UniRef100_UPI00017F508B RNA polymerase sigma factor rpoD n=1 Tax=Clostridium difficile
QCD-23m63 RepID=UPI00017F508B
Length = 294
Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Frame = -3
Query: 503 LRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEIIPGPVEMTPEK 324
L R+PT DE+A+ + V V + R + +SLD + + + + E IP +
Sbjct: 155 LLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDTPLKEDEDSSLVEFIPSDADFKDVV 214
Query: 323 M--VEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLKLSRERIRQIY 150
M VE+ +K+ + +LL L ++E++++R+ FG+D D P + E+IG+V ++RERIRQI
Sbjct: 215 MHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTLEQIGRVFGVTRERIRQIE 274
Query: 149 GIALSKLQQTTFVDSLKFY 93
A+ KL+ + + LK +
Sbjct: 275 AKAIRKLRHPSKLKQLKHF 293
[223][TOP]
>UniRef100_Q67RX0 RNA polymerase sigma factor n=1 Tax=Symbiobacterium thermophilum
RepID=Q67RX0_SYMTH
Length = 388
Score = 84.7 bits (208), Expect = 4e-15
Identities = 49/160 (30%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + K+ L + L R+PT +E+A V+++ V V + + +++P+SL+ +
Sbjct: 228 IPVHMVETINKLIRVTRQLVQELGREPTPEEIAAVMDIPVERVREIQKIAQEPVSLETPI 287
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + I P + L+K+ + ++L L REEK++RL FGLD
Sbjct: 288 GEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVLESLTPREEKVLRLRFGLDDGRAR 347
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EE+G+V ++RERIRQI AL KL+ + LK Y+
Sbjct: 348 TLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 387
[224][TOP]
>UniRef100_Q04T13 RNA polymerase sigma factor n=2 Tax=Leptospira borgpetersenii
serovar Hardjo-bovis RepID=Q04T13_LEPBJ
Length = 585
Score = 84.7 bits (208), Expect = 4e-15
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Frame = -3
Query: 545 VAKISEANNVLRK------RLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTD 384
V I + N V+R+ R P +E+AE L V V +V +R+PISL+ V
Sbjct: 426 VHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGS 485
Query: 383 YGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSF 204
+ + IP TP ++ + + ++L+ L RE+K++R+ FGLD P +
Sbjct: 486 EEDSELGDFIPDTEVETPVNTAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTL 545
Query: 203 EEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
EE+G K++RERIRQI AL +L+ + LK Y+
Sbjct: 546 EEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
[225][TOP]
>UniRef100_B9MQ36 RNA polymerase sigma factor n=1 Tax=Anaerocellum thermophilum DSM
6725 RepID=B9MQ36_ANATD
Length = 417
Score = 84.7 bits (208), Expect = 4e-15
Identities = 48/156 (30%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
MV I++ V R+ L+ R+PT +E+A+ +N+ V V + + +++P+SL+ + +
Sbjct: 261 MVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEE 320
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ + IP + P + ++K+ + ++L+ LN+RE+K+++L FGL+ + EE
Sbjct: 321 DSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEE 380
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+GK ++RERIRQI AL KL+ + LK ++
Sbjct: 381 VGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
[226][TOP]
>UniRef100_B8ZQV3 RNA polymerase sigma factor n=2 Tax=Mycobacterium leprae
RepID=B8ZQV3_MYCLB
Length = 319
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/159 (31%), Positives = 80/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + + + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 219 GSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI + KL+ D L+ Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIERDVMCKLRNGERADRLRSY 317
[227][TOP]
>UniRef100_B3QZV6 RNA polymerase sigma factor n=1 Tax=Candidatus Phytoplasma mali AT
RepID=B3QZV6_PHYMT
Length = 419
Score = 84.7 bits (208), Expect = 4e-15
Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = -3
Query: 536 ISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEI 357
IS A + LR +L R+PT +EL+E +N++ + ++ ++PISL+ V + + + E
Sbjct: 264 ISMAKSKLRLKLHREPTIEELSEFINISEKKLRIIEIIKKKPISLEARVGEKDDSSLGEF 323
Query: 356 IPGPVEMTPEKMVEKQLIKQGVAKLL-NKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLK 180
I P ++P + ++++K + ++L + L REEKI+R+ +GL + EE+G V
Sbjct: 324 ISDPDSLSPHDYMLQEIMKNTLNEILEDTLTDREEKILRMRYGLSNGKVHTLEEVGNVFG 383
Query: 179 LSRERIRQIYGIALSKLQQTTFVDSLK 99
++RERIRQI A +L+ + LK
Sbjct: 384 VTRERIRQIEAKAFRRLRTPARQNKLK 410
[228][TOP]
>UniRef100_B0C890 RNA polymerase sigma-70 factor n=1 Tax=Acaryochloris marina
MBIC11017 RepID=B0C890_ACAM1
Length = 318
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/139 (36%), Positives = 79/139 (56%)
Frame = -3
Query: 539 KISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKE 360
KI + L ++L R T ELA L++ V ER+RQP+SLD V D + E
Sbjct: 170 KIKKTQRQLSQKLGRAATISELATSLDLTTKQVREYLERARQPLSLDVRVGDNQDTELGE 229
Query: 359 IIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLK 180
+I P E +PE + ++ + +L+ L ++++++ L FGLD PL+ +IG L
Sbjct: 230 LIEDPSE-SPENFTLQASLRGDLERLMADLTDQQQQVLHLRFGLDDGQPLTLAKIGDRLS 288
Query: 179 LSRERIRQIYGIALSKLQQ 123
+SRER+RQI ALSKL++
Sbjct: 289 ISRERVRQIEREALSKLRK 307
[229][TOP]
>UniRef100_A6QAZ8 RNA polymerase sigma factor n=1 Tax=Sulfurovum sp. NBC37-1
RepID=A6QAZ8_SULNB
Length = 612
Score = 84.7 bits (208), Expect = 4e-15
Identities = 48/157 (30%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
M+ I+ N ++RK L+ ++P + +A+ + + V V V + +++P+SL+ V D
Sbjct: 454 MIETINRINKIIRKHLQETGKEPDLETIAKEVGLTVDKVKNVIKITKEPVSLETPVGDED 513
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFG-LDGDTPLSFE 201
+ F + I ++P V K + + ++L++LN+RE+ ++R+ FG L+ ++ + E
Sbjct: 514 DGRFGDFIEDKTTLSPTDAVLKDDLNNQIDEVLDQLNEREKAVIRMRFGLLEDESDRTLE 573
Query: 200 EIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
EIGK L ++RER+RQI A+ KL+ LK Y+
Sbjct: 574 EIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYI 610
[230][TOP]
>UniRef100_A5UXX4 RNA polymerase sigma factor n=1 Tax=Roseiflexus sp. RS-1
RepID=A5UXX4_ROSS1
Length = 349
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/148 (33%), Positives = 82/148 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V ++ A + L + L R+PT +E+A L + V E SR+P+SL+ V
Sbjct: 189 LPVHMSESVGQVKRAADRLAQVLERQPTPEEIATALGQPTERIERVLEASRRPVSLEMPV 248
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ G T + + TP + QL+++ +A L++LN+RE +I+ L +GL
Sbjct: 249 GEDGEHTLGDFLQDSDLPTPVEAASHQLLRRDLAAALDRLNERERRIIDLRYGLVDGQRR 308
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQ 126
+ EE+G+VL ++RER RQI AL +L+
Sbjct: 309 TLEEVGRVLGMTRERARQIEAEALRRLR 336
[231][TOP]
>UniRef100_A4XHW4 RNA polymerase sigma factor n=1 Tax=Caldicellulosiruptor
saccharolyticus DSM 8903 RepID=A4XHW4_CALS8
Length = 411
Score = 84.7 bits (208), Expect = 4e-15
Identities = 48/156 (30%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
MV I++ V R+ L+ R+PT +E+A+ +N+ V V + + +++P+SL+ + +
Sbjct: 255 MVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPVEKVREILKIAQEPVSLETPIGEEE 314
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ + IP + P + ++K+ + ++L+ LN+RE+K+++L FGL+ + EE
Sbjct: 315 DSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSLNEREKKVLKLRFGLEDGRARTLEE 374
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+GK ++RERIRQI AL KL+ + LK ++
Sbjct: 375 VGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 410
[232][TOP]
>UniRef100_A0PT65 RNA polymerase sigma factor n=1 Tax=Mycobacterium ulcerans Agy99
RepID=A0PT65_MYCUA
Length = 323
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/159 (32%), Positives = 80/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELA + V + + E SR P+SLD V
Sbjct: 163 LPVHLVEQVNKLARIKREIHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPV 222
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE +++RL FGLD P
Sbjct: 223 GSDEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPR 282
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI + KL+ D L+ Y
Sbjct: 283 TLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSY 321
[233][TOP]
>UniRef100_Q59553 RNA polymerase sigma factor n=1 Tax=Mycobacterium smegmatis
RepID=Q59553_MYCSM
Length = 319
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/159 (32%), Positives = 81/159 (50%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ + + L R+ T +ELAE + V + + E SR P+SLD V
Sbjct: 159 LPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPV 218
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ I M+ E V +L+ + +L L++RE++++RL FGLD P
Sbjct: 219 GTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPR 278
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI ++KL+ D Y
Sbjct: 279 TLDQIGKLFGLSRERVRQIEREVMAKLRNGERADQPAVY 317
[234][TOP]
>UniRef100_C2FTX8 RNA polymerase sigma-70 factor n=2 Tax=Sphingobacterium
spiritivorum RepID=C2FTX8_9SPHI
Length = 286
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/160 (31%), Positives = 89/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP + G ++KIS+A + L + R+P+ +ELA++L V V+ S + +S+D
Sbjct: 127 LPLNQVGSLSKISKAFSKLEQEYEREPSPEELADILETTVDKVSDTLSNSGRHVSMDAPF 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
T +++ T ++++ L ++ + + L L +RE +I+ L+FGL + L
Sbjct: 187 VQGEENTLLDVLENHDPDTDSSLIDESLSEE-IKRSLATLTEREREIIVLFFGLGSNHQL 245
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
S EEIG+ L+RER+RQI AL +L+ T+ LK Y+
Sbjct: 246 SLEEIGEKFNLTRERVRQIKDKALQRLRHTSRSKILKSYL 285
[235][TOP]
>UniRef100_C0EUX7 RNA polymerase sigma factor n=1 Tax=Eubacterium hallii DSM 3353
RepID=C0EUX7_9FIRM
Length = 422
Score = 84.7 bits (208), Expect = 4e-15
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 8/152 (5%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTD-- 384
MV ++ N R+ L+ R+PT +E+AE +N+ V V +S+ S++P+SL+ + +
Sbjct: 265 MVETMNRVNRTSRRLLQEYGREPTPEEIAEAMNLPVERVLEISKISQEPVSLETPIGEEE 324
Query: 383 ---YGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
G+ E IP P + ++ +QL K+++ L++RE+K++ L FGL+ P
Sbjct: 325 DSHLGDFIQDEHIPVPADEAAHTLLREQL-----EKVMDTLSEREQKVLALRFGLEDGKP 379
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQTT 117
+ EE+G+ +++RERIRQI AL KL+ T
Sbjct: 380 HTLEEVGREFQVTRERIRQIEAKALRKLRHPT 411
[236][TOP]
>UniRef100_Q8S9D0 RNA polymerase sigma factor n=1 Tax=Guillardia theta
RepID=Q8S9D0_GUITH
Length = 490
Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/161 (28%), Positives = 90/161 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++ I + L + R PT +E+AE ++++V + V + ++ +SL++ +
Sbjct: 282 LPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPL 341
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + + +PE+ VEK +++ + ++N L+ RE +VR+ +GLD
Sbjct: 342 KNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIK 401
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ EEIG++ ++RER+RQI A+ KL+Q L+ YV+
Sbjct: 402 TLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVL 442
[237][TOP]
>UniRef100_Q84Q84 Os03g0271100 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q84Q84_ORYSJ
Length = 540
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP +++ E LR++L+R PT +E+A + + V + +SL V
Sbjct: 376 LPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKV 435
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++EI P T E+M+ + L+K+ V + L+ L+ RE +++R FG+D
Sbjct: 436 -GCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLR 494
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +IG+++ +SRERIRQI +A KL+ V SL+ Y+
Sbjct: 495 TLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[238][TOP]
>UniRef100_Q10NF3 cDNA clone:J013116E16, full insert sequence n=1 Tax=Oryza sativa
Japonica Group RepID=Q10NF3_ORYSJ
Length = 343
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP +++ E LR++L+R PT +E+A + + V + +SL V
Sbjct: 179 LPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKV 238
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++EI P T E+M+ + L+K+ V + L+ L+ RE +++R FG+D
Sbjct: 239 -GCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLR 297
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +IG+++ +SRERIRQI +A KL+ V SL+ Y+
Sbjct: 298 TLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 337
[239][TOP]
>UniRef100_A3AGH1 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica
Group RepID=A3AGH1_ORYSJ
Length = 497
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP +++ E LR++L+R PT +E+A + + V + +SL V
Sbjct: 333 LPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKV 392
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++EI P T E+M+ + L+K+ V + L+ L+ RE +++R FG+D
Sbjct: 393 -GCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLR 451
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +IG+++ +SRERIRQI +A KL+ V SL+ Y+
Sbjct: 452 TLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 491
[240][TOP]
>UniRef100_A2XF08 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=A2XF08_ORYSI
Length = 540
Score = 84.7 bits (208), Expect = 4e-15
Identities = 50/160 (31%), Positives = 88/160 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP +++ E LR++L+R PT +E+A + + V + +SL V
Sbjct: 376 LPAHMAEASSRVKECRRRLRRQLKRLPTNEEIASDTGMPLRRVEAAMSLPKYTVSLTSKV 435
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
++T++EI P T E+M+ + L+K+ V + L+ L+ RE +++R FG+D
Sbjct: 436 -GCTDMTYQEITPDTSTETAEEMLHRWLMKEDVDRALDGLSPRERQVIRYRFGMDDGRLR 494
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +IG+++ +SRERIRQI +A KL+ V SL+ Y+
Sbjct: 495 TLHDIGRLMGVSRERIRQIELVAFRKLRGRKKVQSLQHYL 534
[241][TOP]
>UniRef100_A9BK56 RpoD n=1 Tax=Cryptophyta RepID=A9BK56_9CRYP
Length = 485
Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/161 (28%), Positives = 90/161 (55%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP Y ++ I + L + R PT +E+AE ++++V + V + ++ +SL++ +
Sbjct: 282 LPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLRSVLQSAQPTLSLERPL 341
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + + + +PE+ VEK +++ + ++N L+ RE +VR+ +GLD
Sbjct: 342 KNDDDASQLSDFIEADQESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYGLDDGRIK 401
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYVV 87
+ EEIG++ ++RER+RQI A+ KL+Q L+ YV+
Sbjct: 402 TLEEIGQIFSVTRERVRQIEAKAIRKLRQPYRSSILRDYVL 442
[242][TOP]
>UniRef100_P61540 RNA polymerase sigma factor rpoD n=2 Tax=Leptospira interrogans
RepID=RPOD_LEPIC
Length = 585
Score = 84.7 bits (208), Expect = 4e-15
Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Frame = -3
Query: 545 VAKISEANNVLRK------RLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTD 384
V I + N V+R+ R P +E+AE L V V +V +R+PISL+ V
Sbjct: 426 VHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAREPISLEIPVGS 485
Query: 383 YGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSF 204
+ + IP TP ++ + + ++L+ L RE+K++R+ FGLD P +
Sbjct: 486 EEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMRFGLDDGYPQTL 545
Query: 203 EEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
EE+G K++RERIRQI AL +L+ + LK Y+
Sbjct: 546 EEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
[243][TOP]
>UniRef100_Q73W40 RNA polymerase sigma factor n=1 Tax=Mycobacterium avium subsp.
paratuberculosis RepID=Q73W40_MYCPA
Length = 509
Score = 84.3 bits (207), Expect = 6e-15
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
MV I++ + R+ L+ R+PT +ELA+ +++ V + + +R+PISLD+T+ D G
Sbjct: 353 MVEVINKLGRIQRELLQDPGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEG 412
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEE 198
+ + I + V L++ + +L L++RE +VRL FGL P + +E
Sbjct: 413 DSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDE 472
Query: 197 IGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
IG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 473 IGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 508
[244][TOP]
>UniRef100_Q3YSE6 RNA polymerase sigma factor n=1 Tax=Ehrlichia canis str. Jake
RepID=Q3YSE6_EHRCJ
Length = 622
Score = 84.3 bits (207), Expect = 6e-15
Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Frame = -3
Query: 548 MVAKISEANNVLRKRLR---RKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYG 378
M+ +++ N LR+ L R+PT +EL+ LN+NV + V + + P+SL+ + D
Sbjct: 466 MIETVNKINRTLRQMLHEMGREPTLEELSAKLNINVDKIRKVMKIVKDPVSLESPIGDDD 525
Query: 377 NLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGL-DGDTPLSFE 201
+ TF + I + PE +++ K+L+ L +EE+I+R+ FG+ G + E
Sbjct: 526 SSTFGDCIEDKRAVKPEDAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLE 585
Query: 200 EIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLK 99
E+GK+ ++RERIRQI AL KL+ + L+
Sbjct: 586 EVGKLFNVTRERIRQIEAKALRKLRHPSRARKLR 619
[245][TOP]
>UniRef100_Q18C16 RNA polymerase sigma factor n=2 Tax=Clostridium difficile
RepID=Q18C16_CLOD6
Length = 296
Score = 84.3 bits (207), Expect = 6e-15
Identities = 46/139 (33%), Positives = 81/139 (58%), Gaps = 2/139 (1%)
Frame = -3
Query: 503 LRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTVTDYGNLTFKEIIPGPVEMTPEK 324
L R+PT DE+A+ + V V + R + +SLD + + + + E IP +
Sbjct: 157 LLREPTIDEIADACGLEVDKVLELLRRDKNVVSLDTPLKEDEDSSLVEFIPSDADFKDVV 216
Query: 323 M--VEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPLSFEEIGKVLKLSRERIRQIY 150
+ VE+ +K+ + +LL L ++E++++R+ FG+D D P + E+IGKV ++RERIRQI
Sbjct: 217 IHEVEQHNLKEKIEELLTGLGEQEQQVLRMRFGIDDDDPKTLEQIGKVFGVTRERIRQIE 276
Query: 149 GIALSKLQQTTFVDSLKFY 93
A+ KL+ + + LK +
Sbjct: 277 AKAIRKLRHPSKLKQLKHF 295
[246][TOP]
>UniRef100_Q0S1K1 RNA polymerase sigma factor n=1 Tax=Rhodococcus jostii RHA1
RepID=Q0S1K1_RHOSR
Length = 323
Score = 84.3 bits (207), Expect = 6e-15
Identities = 51/159 (32%), Positives = 82/159 (51%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP V K++ L ++L R+ T DELAE + + + + SR P+SLD V
Sbjct: 163 LPVHLVEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPVSLDMPV 222
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + I + E V L+ V +L L++RE++++RL +GLD P
Sbjct: 223 GNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRSVLATLDEREQQVIRLRYGLDDGQPR 282
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFY 93
+ ++IGK+ LSRER+RQI + KL+Q + L+ Y
Sbjct: 283 TLDQIGKLFGLSRERVRQIEREVMGKLRQGDRAERLRSY 321
[247][TOP]
>UniRef100_B9L491 RNA polymerase sigma factor n=1 Tax=Thermomicrobium roseum DSM 5159
RepID=B9L491_THERP
Length = 334
Score = 84.3 bits (207), Expect = 6e-15
Identities = 48/153 (31%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P + ++AKI A + ++ R T +ELAE+L ++V+ + + + SLDK +
Sbjct: 176 VPVHMHDLIAKIRRAEAQIEQQKGRPATNEELAELLGIDVARIEQARTQIPRTSSLDKPI 235
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQL---IKQGVAKLLNKLNKREEKIVRLYFGLDGD 219
+ G + +++P P + +VE+ L I++ + + L +L +RE ++ + FGLDG+
Sbjct: 236 GEDGESSIGDLLPDP---RSDDVVEEALTNAIREQIRRSLEQLTERERTVLVMRFGLDGE 292
Query: 218 TPLSFEEIGKVLKLSRERIRQIYGIALSKLQQT 120
P + EI LK+SRER+RQ+ AL KL+ +
Sbjct: 293 QPRTLAEIADALKISRERVRQVEKEALQKLRNS 325
[248][TOP]
>UniRef100_B1ZU80 RNA polymerase sigma factor n=1 Tax=Opitutus terrae PB90-1
RepID=B1ZU80_OPITP
Length = 353
Score = 84.3 bits (207), Expect = 6e-15
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP ++K+ L + L R+PT +ELA L + S V + S +P SLD V
Sbjct: 160 LPVHLVDKISKMRRTAMALTEELGREPTDEELAIELQIPTSKVAHLKSVSVRPASLDAPV 219
Query: 389 TDYGN-LTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTP 213
+ G+ TF EI+ ++P + + ++ + + ++ L++RE +I+RL FGLDG
Sbjct: 220 GEEGDSATFGEIVGDDNAVSPFEGLREKNLNSDLHAMVASLDEREAEIIRLRFGLDGKDE 279
Query: 212 LSFEEIGKVLKLSRERIRQIYGIALSKLQQ 123
L+ EE+G+ ++RERIRQ+ +ALSK+++
Sbjct: 280 LTLEEVGRRFHVTRERIRQLEYLALSKMRK 309
[249][TOP]
>UniRef100_Q9AGV7 RNA polymerase sigma factor n=1 Tax=Corynebacterium ammoniagenes
RepID=Q9AGV7_CORAM
Length = 467
Score = 84.3 bits (207), Expect = 6e-15
Identities = 50/160 (31%), Positives = 86/160 (53%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
+P ++ K+ L + L R+PT ELA+ +++ V + + +R+PISLD+T+
Sbjct: 307 IPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYAREPISLDQTI 366
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
D G+ + I + V L++ + +L L++RE +VRL FGL P
Sbjct: 367 GDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPR 426
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ +EIG+V ++RERIRQI +SKL+ + L+ Y+
Sbjct: 427 TLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 466
[250][TOP]
>UniRef100_Q1VVE0 RNA polymerase sigma factor rpoD (Sigma-A) n=1 Tax=Psychroflexus
torquis ATCC 700755 RepID=Q1VVE0_9FLAO
Length = 287
Score = 84.3 bits (207), Expect = 6e-15
Identities = 48/160 (30%), Positives = 87/160 (54%)
Frame = -3
Query: 569 LPGEKYGMVAKISEANNVLRKRLRRKPTYDELAEVLNVNVSTVTLVSERSRQPISLDKTV 390
LP K G + KI++ +L +R +R P+ DE+A+ L + V+ V + S + +S+D +
Sbjct: 127 LPLNKIGSINKINKTFAILEQRHQRPPSPDEIAKELEMTVNDVKESLKNSGRHLSMDAPL 186
Query: 389 TDYGNLTFKEIIPGPVEMTPEKMVEKQLIKQGVAKLLNKLNKREEKIVRLYFGLDGDTPL 210
+ + +++ PE + + ++ + + L L RE ++RLYFGL P+
Sbjct: 187 IEGEDSNLYDVLKFGESPNPENDLLHESLQTEIERALETLTTREADVIRLYFGLGNQQPM 246
Query: 209 SFEEIGKVLKLSRERIRQIYGIALSKLQQTTFVDSLKFYV 90
+ EEIG+ L+RER+RQI + +L+ T+ LK Y+
Sbjct: 247 TLEEIGETFGLTRERVRQIKEKGVRRLKHTSRSTILKTYL 286