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[1][TOP]
>UniRef100_UPI0000163E03 RNA-dependent RNA polymerase n=1 Tax=Beet ringspot virus
RepID=UPI0000163E03
Length = 824
Score = 318 bits (814), Expect = 2e-85
Identities = 147/192 (76%), Positives = 168/192 (87%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKA
Sbjct: 519 FYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKA 578
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+
Sbjct: 579 HFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRP 638
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
S LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYR
Sbjct: 639 SQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYR 698
Query: 542 NCIPESTTGLEQ 577
N IPEST+GLEQ
Sbjct: 699 NVIPESTSGLEQ 710
[2][TOP]
>UniRef100_P18522 RNA-directed RNA polymerase n=1 Tax=Beet ringspot virus
RepID=POL1_BRSV
Length = 2264
Score = 318 bits (814), Expect = 2e-85
Identities = 147/192 (76%), Positives = 168/192 (87%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F++ LPL QFRTWAFCE+FHS+QQTGML++DPA VLDHMSG+DFKKFMHVSEQGNKA
Sbjct: 1959 FYIKALPLATGQFRTWAFCEAFHSAQQTGMLKYDPAKVLDHMSGLDFKKFMHVSEQGNKA 2018
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HFYT +LGV GPHYKP E DFIVSTEPLKMG+ GEHVPI+YG GVG LPTK WV+ FG+
Sbjct: 2019 HFYTEMLGVAGPHYKPQENDFIVSTEPLKMGVCGEHVPIQYGSGVGGLPTKKWVLDFGRP 2078
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
S LKN GYLI+P+LR Q+EAGKR++FMSPAPYVANNAALIAFG+ K+L Q+DALVHYR
Sbjct: 2079 SQLKNKLGYLIHPILRAQIEAGKRLVFMSPAPYVANNAALIAFGTGGKMLIQKDALVHYR 2138
Query: 542 NCIPESTTGLEQ 577
N IPEST+GLEQ
Sbjct: 2139 NVIPESTSGLEQ 2150
[3][TOP]
>UniRef100_UPI000034ED08 Pol n=1 Tax=Tomato black ring virus RepID=UPI000034ED08
Length = 824
Score = 302 bits (773), Expect = 1e-80
Identities = 143/192 (74%), Positives = 164/192 (85%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKA
Sbjct: 519 FYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKA 578
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK
Sbjct: 579 HFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKP 638
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
S LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYR
Sbjct: 639 SQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYR 698
Query: 542 NCIPESTTGLEQ 577
N IPEST+GLEQ
Sbjct: 699 NVIPESTSGLEQ 710
[4][TOP]
>UniRef100_Q8B8X3 RNA-directed RNA polymerase n=2 Tax=Tomato black ring virus
RepID=POL1_TBRVM
Length = 2266
Score = 302 bits (773), Expect = 1e-80
Identities = 143/192 (74%), Positives = 164/192 (85%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F+ RLPL+V Q RTWAFCE+FHS+QQTGM ++DPA VLDHMSGVDFK+FMH+SEQGNKA
Sbjct: 1961 FYAQRLPLMVSQLRTWAFCEAFHSAQQTGMQKYDPAVVLDHMSGVDFKRFMHMSEQGNKA 2020
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HFYT +LGV GPHYKP E DFIVS +PLK G+ GE+VPI +G G+G LPTK WV FGK
Sbjct: 2021 HFYTEMLGVSGPHYKPQEGDFIVSNQPLKPGVQGEYVPIVFGEGIGGLPTKKWVGDFGKP 2080
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
S LKN+KGYLI LLREQ+EAGKR+IFM PAPYVANNAALI+FGSA K+L Q+DAL HYR
Sbjct: 2081 SQLKNSKGYLITGLLREQIEAGKRLIFMGPAPYVANNAALISFGSAHKMLIQKDALAHYR 2140
Query: 542 NCIPESTTGLEQ 577
N IPEST+GLEQ
Sbjct: 2141 NVIPESTSGLEQ 2152
[5][TOP]
>UniRef100_UPI00017F0C90 RNA-dependent RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI00017F0C90
Length = 826
Score = 266 bits (680), Expect = 9e-70
Identities = 124/190 (65%), Positives = 151/190 (79%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KA
Sbjct: 518 FYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKA 577
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+
Sbjct: 578 HFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKNFGRP 636
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
S LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYR
Sbjct: 637 SQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYR 696
Query: 542 NCIPESTTGL 571
N IPES GL
Sbjct: 697 NSIPESVDGL 706
[6][TOP]
>UniRef100_P13025 RNA-directed RNA polymerase n=1 Tax=Grapevine chrome mosaic virus
RepID=POL1_GCMV
Length = 2252
Score = 266 bits (680), Expect = 9e-70
Identities = 124/190 (65%), Positives = 151/190 (79%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F++ARLP+ VDQFRTWAFCE+FHS+QQTGMLRHDPA +LD ++G +F +FM S +G+KA
Sbjct: 1944 FYIARLPMQVDQFRTWAFCEAFHSAQQTGMLRHDPAKILDSLAGPEFPRFMRCSGEGDKA 2003
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HFYT +LGVCGPHYKP E+DF+VST P+K G G H+PIK GGGVG LPT WV +FG+
Sbjct: 2004 HFYTPILGVCGPHYKPKEQDFLVSTLPIKQG-EGVHIPIKIGGGVGGLPTHQWVKNFGRP 2062
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
S LKN GY Y LL EQ+E GKR++FMS APYVA NAALI+FGS+ K+L ++ L HYR
Sbjct: 2063 SQLKNNDGYACYKLLCEQIEQGKRLVFMSAAPYVAGNAALISFGSSRKILKEQMPLCHYR 2122
Query: 542 NCIPESTTGL 571
N IPES GL
Sbjct: 2123 NSIPESVDGL 2132
[7][TOP]
>UniRef100_UPI00003FE52F RNA-dependent RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=UPI00003FE52F
Length = 846
Score = 179 bits (454), Expect = 1e-43
Identities = 93/192 (48%), Positives = 122/192 (63%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+
Sbjct: 526 FYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQV 585
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HF L V GP YKP + +VST PLK G G VP++ G G+G LPT WV F +
Sbjct: 586 HFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRP 645
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
+ L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YR
Sbjct: 646 TQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYR 705
Query: 542 NCIPESTTGLEQ 577
N IPEST GLEQ
Sbjct: 706 NVIPESTYGLEQ 717
[8][TOP]
>UniRef100_Q8QVV0 RNA-directed RNA polymerase n=1 Tax=Cycas necrotic stunt virus
RepID=POL1_CNSV
Length = 2336
Score = 179 bits (454), Expect = 1e-43
Identities = 93/192 (48%), Positives = 122/192 (63%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F+ ++ +L + TWA E+FH S+QTGM + PA +D G +F +FMH S+ GN+
Sbjct: 2016 FYTKKMNILPAGYYTWADREAFHMSKQTGMEAYQPAKEIDLDVGQEFARFMHTSDIGNQV 2075
Query: 182 HFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKS 361
HF L V GP YKP + +VST PLK G G VP++ G G+G LPT WV F +
Sbjct: 2076 HFTRQCLVVAGPFYKPTPDQLLVSTTPLKQGESGYWVPVETGMGIGNLPTIAWVHRFMRP 2135
Query: 362 SSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHYR 541
+ L +A GY I+ +R +E+GK ++F S APYVA NAAL+AFG A KLL + AL YR
Sbjct: 2136 TQLVDAYGYKIWGNVRSHIESGKSLVFRSEAPYVAGNAALMAFGQAAKLLEIKTALNLYR 2195
Query: 542 NCIPESTTGLEQ 577
N IPEST GLEQ
Sbjct: 2196 NVIPESTYGLEQ 2207
[9][TOP]
>UniRef100_A2ID54 Polyprotein (Fragment) n=1 Tax=Tomato white ringspot virus
RepID=A2ID54_9SECO
Length = 1916
Score = 92.4 bits (228), Expect = 2e-17
Identities = 61/198 (30%), Positives = 106/198 (53%), Gaps = 6/198 (3%)
Frame = +2
Query: 2 FFVARLPLLVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKA 181
F+V+++P D TW FH +QQ G + + P + ++ + + K M ++ G +
Sbjct: 1700 FYVSKIPSWSD-LPTWDQARCFHEAQQHGAMPYRPQASMELLVDMHTDKKM-MANHGEQD 1757
Query: 182 H--FYTSVLGVCGPHY--KPCEEDFIVSTEPLKMG--ILGEHVPIKYGGGVGRLPTKNWV 343
H + + V GP + + C++ F+VST PL G H+P++ G G+GR+P+++WV
Sbjct: 1758 HLIYVQPRIAVSGPKWIIESCDKQFVVSTLPLSRAEKFSGIHIPVECGDGLGRMPSQDWV 1817
Query: 344 MSFGKSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRD 523
F + +++ + +IY + AGK IIF APY+A A I+F A + + RD
Sbjct: 1818 RRFRR---IRHVQIRVIY----DAYAAGKTIIFKDVAPYIAGWTAAISFACAQQ-YSYRD 1869
Query: 524 ALVHYRNCIPESTTGLEQ 577
L Y N +++G+EQ
Sbjct: 1870 MLNRYNNVCTPNSSGIEQ 1887
[10][TOP]
>UniRef100_UPI0000163DCE RNA-dependent RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=UPI0000163DCE
Length = 707
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 44 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 214
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 508 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 565
Query: 215 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 379
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 566 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 625
Query: 380 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 502
+ +R+ +GK I F PYVAN A I F +
Sbjct: 626 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 659
[11][TOP]
>UniRef100_Q8V5E0 RNA-directed RNA polymerase n=1 Tax=Blackcurrant reversion virus
RepID=POL1_BRAV
Length = 2094
Score = 63.5 bits (153), Expect = 1e-08
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +2
Query: 44 TWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSV---LGVCG 214
+W +FH Q +G+ P + D VD + + +A F T + + +CG
Sbjct: 1895 SWREAFAFHQGQISGVTPWTPYQMFD--VPVDGGRLRAMMANQGEAAFSTHLGREIYICG 1952
Query: 215 PHY--KPCEEDFIVSTEPLKMGILGE--HVPIKYG-GGVGRLPTKNWVMSFGKSSSLKNA 379
P + E F+VST PL+ G H I+Y GVGRLP+++WV F S+ A
Sbjct: 1953 PKWCVSDPEHQFVVSTTPLRSADRGSGIHRAIEYPCNGVGRLPSQDWVTKFKSSAHRVTA 2012
Query: 380 KGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAM 502
+ +R+ +GK I F PYVAN A I F +
Sbjct: 2013 E-------IRKAHASGKAIYFRDDPPYVANWCAAIGFAQGL 2046
[12][TOP]
>UniRef100_B4YNP7 Polyprotein 1 n=1 Tax=Arabis mosaic virus RepID=B4YNP7_ARMV
Length = 2285
Score = 61.2 bits (147), Expect = 5e-08
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 3/193 (1%)
Frame = +2
Query: 2 FFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNK 178
F++ +LP + TW ++FH Q +G P +++ GV F F+ +
Sbjct: 1956 FYLEKLPPGSYKELTTWYQAQTFHECQLSGESNWKPQGLIEISHGVGFASFVQQDGTELE 2015
Query: 179 AHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMGILGEH-VPIKYGGGVGRLPTKNWVMSFG 355
H L + G Y +E+ ++S L G + H + +K G G+GRLP+
Sbjct: 2016 RHDICPGLAISGARYIAKKEEILMSLSSLLPGDVNAHKLELKCGDGIGRLPS-------- 2067
Query: 356 KSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVH 535
K+S L ++ L ++ LE K ++ PY+ A G + + R L
Sbjct: 2068 KASVLAQRNPGIVMRLCKQALEEKKTLVIRDERPYIGGWAMACICGESFG-FSIRSTLAL 2126
Query: 536 YRNCI-PESTTGL 571
Y N + P+ GL
Sbjct: 2127 YANLLGPDRKNGL 2139
[13][TOP]
>UniRef100_UPI00003FE53F RNA-dependent RNA polymerase n=1 Tax=Tomato ringspot virus
RepID=UPI00003FE53F
Length = 711
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 576
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 577 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 674
[14][TOP]
>UniRef100_Q9QRA7 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA7_9SECO
Length = 985
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[15][TOP]
>UniRef100_P29150 RNA-directed RNA polymerase n=1 Tax=Tomato ringspot virus (ISOLATE
RASPBERRY) RepID=POL1_TORVR
Length = 2197
Score = 58.9 bits (141), Expect = 3e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 2005 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 2062
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 2063 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 2115
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 2116 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 2160
[16][TOP]
>UniRef100_Q9QRA8 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA8_9SECO
Length = 985
Score = 58.5 bits (140), Expect = 4e-07
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVADRLAVAGPGWR 850
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK ++F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[17][TOP]
>UniRef100_Q155U1 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Tomato ringspot
virus RepID=Q155U1_9SECO
Length = 711
Score = 58.5 bits (140), Expect = 4e-07
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 519 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDVKFLQHKAPATALSIVADRLAVAGPGWR 576
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 577 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 629
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK I+F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 630 HMRDSWNEGKTIVFRCEGPFVSGWAAAISFGASIG-MNAQDLLINY 674
[18][TOP]
>UniRef100_Q9QRA6 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA6_9SECO
Length = 985
Score = 58.2 bits (139), Expect = 5e-07
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C SFH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCASFHDEQYSQWKPWSPVKFLE--VDVPDAKFLQHKAPATALSIVLDRLAVAGPGWR 850
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG G G+ T+ + ++ + LK+ +
Sbjct: 851 NKDPDRYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRR---LKDHR----VR 903
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK ++F P+V+ AA I+FG+++ +N +D L++Y
Sbjct: 904 HMRDSWNEGKTVVFRCEGPFVSGWAAAISFGTSVG-MNAQDLLINY 948
[19][TOP]
>UniRef100_Q9QRA9 Polyprotein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA9_9SECO
Length = 985
Score = 56.6 bits (135), Expect = 1e-06
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Frame = +2
Query: 47 WAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNKAHFYTSVLGVCGPHYK 226
W C +FH Q + P L+ V KF+ L V GP ++
Sbjct: 793 WRHCAAFHDEQYSQWKPWAPVKFLE--VDVPDVKFLQHKAPSTALSIVADRLAVAGPGWR 850
Query: 227 PCEED--FIVSTEPLKMGILGEHVPIKYGGGVGRLPTKNWVMSFGKSSSLKNAKGYLIYP 400
+ D +VS LK G + P+ YG GVG+ T+ + ++ K +
Sbjct: 851 NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGVGQQATEASIFAYRKYKDHRVRH------ 904
Query: 401 LLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVHY 538
+R+ GK I+F P+V+ AA I+FG+ + +N +D L +Y
Sbjct: 905 -MRDSWNEGKTIVFRCEGPFVSGWAAAISFGTTVG-MNAQDLLRNY 948
[20][TOP]
>UniRef100_UPI00003FE537 RNA-dependent RNA polymerase n=1 Tax=Arabis mosaic virus
RepID=UPI00003FE537
Length = 825
Score = 55.5 bits (132), Expect = 3e-06
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
Frame = +2
Query: 2 FFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNK 178
F++ +LP + TW + FH Q +G P +++ G F F+ + +
Sbjct: 495 FYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELE 554
Query: 179 AHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFG 355
H L + G Y EE+ ++S L G I + +K G G+GRLP+
Sbjct: 555 RHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS-------- 606
Query: 356 KSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVH 535
K+S L K ++ L ++ K ++ PY+ A G + + +D L
Sbjct: 607 KASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLAL 665
Query: 536 YRNCI-PESTTGL 571
Y N + P GL
Sbjct: 666 YANLMGPNRKNGL 678
[21][TOP]
>UniRef100_Q6W8W5 RNA-directed RNA polymerase n=1 Tax=Arabis mosaic virus strain NW
RepID=POL1_ARMVN
Length = 2284
Score = 55.5 bits (132), Expect = 3e-06
Identities = 47/193 (24%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
Frame = +2
Query: 2 FFVARLPL-LVDQFRTWAFCESFHSSQQTGMLRHDPASVLDHMSGVDFKKFMHVSEQGNK 178
F++ +LP + TW + FH Q +G P +++ G F F+ + +
Sbjct: 1954 FYLEKLPPGSYKELTTWYEAQIFHECQLSGESGWKPQGLIEVSHGASFASFVQQNGTELE 2013
Query: 179 AHFYTSVLGVCGPHYKPCEEDFIVSTEPLKMG-ILGEHVPIKYGGGVGRLPTKNWVMSFG 355
H L + G Y EE+ ++S L G I + +K G G+GRLP+
Sbjct: 2014 RHDICPGLAISGSKYIAREEEILMSLSSLLPGDINAVKLTLKCGDGIGRLPS-------- 2065
Query: 356 KSSSLKNAKGYLIYPLLREQLEAGKRIIFMSPAPYVANNAALIAFGSAMKLLNQRDALVH 535
K+S L K ++ L ++ K ++ PY+ A G + + +D L
Sbjct: 2066 KASVLSQRKPGIVMQLCARAIKEKKTLVIRDERPYIGGWAMACICGESFG-FSIKDTLAL 2124
Query: 536 YRNCI-PESTTGL 571
Y N + P GL
Sbjct: 2125 YANLMGPNRKNGL 2137