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[1][TOP]
>UniRef100_A8W7G1 Putative RNA-dependent RNA polymerase n=1 Tax=Primula malacoides
virus China/Mar2007 RepID=A8W7G1_9VIRU
Length = 723
Score = 349 bits (895), Expect = 1e-94
Identities = 165/192 (85%), Positives = 175/192 (91%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
RTL+H IK YGLPFN+ A K++LTD + YI +AN FFNDYPTLLFTRNHISKR G
Sbjct: 264 RTLVHLIKTYGLPFNMQFACPKSDLTDEQINLYISKANQFFNDYPTLLFTRNHISKRSGT 323
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSN YI+++AR YSTFF
Sbjct: 324 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNHYIDRLARPYSTFF 383
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLH 542
SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLY RMDNLL+
Sbjct: 384 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYSRMDNLLY 443
Query: 543 FLHTWYNNMTFL 578
FLHTWYNNMTFL
Sbjct: 444 FLHTWYNNMTFL 455
[2][TOP]
>UniRef100_Q50LH7 Putative RNA-dependent RNA polymerase n=1 Tax=Rosellinia necatrix
partitivirus 1-W8 RepID=Q50LH7_9VIRU
Length = 709
Score = 249 bits (637), Expect = 8e-65
Identities = 121/196 (61%), Positives = 143/196 (72%), Gaps = 4/196 (2%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
RT +H IKE+G PF + D + F + T+LFTRNHIS RDG
Sbjct: 259 RTWMHHIKEHGYPF----------VPSHDALDNARQYRIFMQKHVTMLFTRNHISDRDGF 308
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKP----SCCIMYGLETIRGSNRYIEQIARDY 350
LK RPVYAVDD FI+ ELM++FPL + AR P CIMY ETIRGSNRY++ IARD+
Sbjct: 309 LKQRPVYAVDDFFILCELMISFPLHVMARYPINGIKSCIMYSFETIRGSNRYLDSIARDF 368
Query: 351 STFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMD 530
+FF++DWSS+DQR+PRVITDI++TDFLR LIVINHGYQPTYEYP YPDL EH LY RM+
Sbjct: 369 ISFFTIDWSSFDQRVPRVITDIFWTDFLRQLIVINHGYQPTYEYPAYPDLSEHDLYKRMN 428
Query: 531 NLLHFLHTWYNNMTFL 578
NLLHFLHTWYNNM F+
Sbjct: 429 NLLHFLHTWYNNMVFV 444
[3][TOP]
>UniRef100_Q6BE43 RNA-dependent RNA polymerase n=1 Tax=Helicobasidium mompa
partitivirus V1-1 RepID=Q6BE43_9VIRU
Length = 706
Score = 243 bits (621), Expect = 6e-63
Identities = 113/192 (58%), Positives = 139/192 (72%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
RT++H +K++ LPFN D D FF PT+LFTRNHIS RDG
Sbjct: 258 RTIVHRLKQFALPFNP---------KDFDSSSIFSRMRFFFLTRPTMLFTRNHISDRDGN 308
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LK RPVYAVDD+F+I+E+MLTFPL + AR P CCIMYGLETIRGSN +I+ A+ + ++F
Sbjct: 309 LKQRPVYAVDDLFLILEVMLTFPLLVMARLPECCIMYGLETIRGSNHWIDSTAKRFRSYF 368
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLH 542
++DWS YDQRLPR ITD+YYTDFL SLI+IN GYQPT +Y YPDL ++ RM NLLH
Sbjct: 369 TIDWSQYDQRLPRCITDLYYTDFLESLIIINFGYQPTADYADYPDLTPDMMFTRMTNLLH 428
Query: 543 FLHTWYNNMTFL 578
FLHTWYNNM ++
Sbjct: 429 FLHTWYNNMVYV 440
[4][TOP]
>UniRef100_Q5GHF1 RNA-dependent RNA polymerase n=1 Tax=Pleurotus ostreatus virus 1
RepID=Q5GHF1_9VIRU
Length = 706
Score = 235 bits (600), Expect = 2e-60
Identities = 112/192 (58%), Positives = 140/192 (72%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R+ IH IK +G PF+ S V SF PT+LFTRNHIS RDG
Sbjct: 259 RSTIHNIKLHGFPFD-----------PSKVPDLGSALRSFILKRPTMLFTRNHISDRDGN 307
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LK RPVYA+DD+FI +E M+TFPL + ARK CCIMYG ETIRGSNR I++IA + +FF
Sbjct: 308 LKQRPVYAMDDLFIRLESMITFPLHVMARKIECCIMYGYETIRGSNRQIDKIASSFRSFF 367
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLH 542
++DWS +DQRLPRVITDI+++DFL +IVI+HGYQPTY+YP+YPDL K++ RMDN+L
Sbjct: 368 TIDWSGFDQRLPRVITDIFWSDFLERMIVISHGYQPTYDYPSYPDLTPDKMFQRMDNILF 427
Query: 543 FLHTWYNNMTFL 578
FLHTWYNN+ F+
Sbjct: 428 FLHTWYNNLVFV 439
[5][TOP]
>UniRef100_D0EIN9 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pleurotus ostreatus
virus 1 RepID=D0EIN9_9VIRU
Length = 502
Score = 232 bits (591), Expect = 2e-59
Identities = 108/192 (56%), Positives = 140/192 (72%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R+ IH IK +G PF+ + DK D SF P +LFTRNHIS RDG
Sbjct: 259 RSTIHSIKLHGYPFDPSKVPDKG-----------DALRSFILKRPVMLFTRNHISDRDGN 307
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LK RPVYA+DD+FI +E +TFPL + ARK CCIMYG ETIRGSNR I+++A +Y ++F
Sbjct: 308 LKQRPVYAMDDLFIRLESKITFPLHVMARKIECCIMYGYETIRGSNRQIDKLASNYKSYF 367
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLH 542
++DWS +DQRLPRVITDI++TDFL +IVI+HGYQPT++YP+YPDL K++ RM N+L
Sbjct: 368 TIDWSGFDQRLPRVITDIFWTDFLERMIVISHGYQPTFDYPSYPDLTPDKMFQRMSNILT 427
Query: 543 FLHTWYNNMTFL 578
FLHTWYNN+ ++
Sbjct: 428 FLHTWYNNLVYV 439
[6][TOP]
>UniRef100_Q9YX75 Putative RNA dependent RNA polymerase n=1 Tax=Fusarium poae virus 1
RepID=Q9YX75_9VIRU
Length = 673
Score = 224 bits (571), Expect = 4e-57
Identities = 107/192 (55%), Positives = 137/192 (71%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R+LIH+IK YG PF +D L + FF PT+LFTRNHIS RDG
Sbjct: 257 RSLIHWIKLYGNPFRHCPSDLAQSLRE------------FFLQRPTMLFTRNHISDRDGI 304
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LK RPVYAVDD+F+ IE MLTFP + ARKP CCIMYGLETIRGSN+ +++IA DY +FF
Sbjct: 305 LKQRPVYAVDDLFLTIESMLTFPAHVIARKPECCIMYGLETIRGSNQILDKIASDYKSFF 364
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLH 542
++DWS +DQRLP VI +++T+++ L+V+NHGY PTYEYP+YPDL + + R+ NL+
Sbjct: 365 TIDWSGFDQRLPWVIVKLFFTEYIPRLLVVNHGYAPTYEYPSYPDLTTNDMVSRLTNLIT 424
Query: 543 FLHTWYNNMTFL 578
FL TWY NM F+
Sbjct: 425 FLATWYFNMVFV 436
[7][TOP]
>UniRef100_Q9Q9X2 Putative RNA-dependent RNA polymerase n=1 Tax=Rhizoctonia solani
virus 717 RepID=Q9Q9X2_9VIRU
Length = 730
Score = 190 bits (483), Expect = 6e-47
Identities = 93/192 (48%), Positives = 125/192 (65%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R L+H IK G PF+ D+ + F +PT++FTRNHISKRDG
Sbjct: 287 RFLVHKIKHSGYPFDFTSDSDRNS-----------KMADFLKSFPTMMFTRNHISKRDGT 335
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LKVRPVYAVD++F+ +E ML FP T+QARKP CCIMYGLETIRGSN ++ +A+ + +F
Sbjct: 336 LKVRPVYAVDELFLDLECMLAFPATVQARKPECCIMYGLETIRGSNIKLDSLAQGFISFA 395
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLH 542
++DWS YDQRLP I ++ +L SL++I+HGY PT EY ++ ++ R NL++
Sbjct: 396 TIDWSGYDQRLPWFIVRAFFFIYLPSLLIISHGYMPTSEYED-TSMNISDMFTRFFNLIN 454
Query: 543 FLHTWYNNMTFL 578
F TWY NM FL
Sbjct: 455 FTATWYFNMVFL 466
[8][TOP]
>UniRef100_B2L075 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Pleurotus ostreatus
virus 1 RepID=B2L075_9VIRU
Length = 185
Score = 182 bits (462), Expect = 2e-44
Identities = 77/122 (63%), Positives = 102/122 (83%)
Frame = +3
Query: 213 DIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFFSLDWSSYDQR 392
D+FI +E M+TFPL + ARK CCIMYG ETIRGSNR I+++A +Y +FF++DWS +DQR
Sbjct: 1 DLFIRLESMITFPLHVMARKIECCIMYGYETIRGSNRQIDKLASNYKSFFTIDWSGFDQR 60
Query: 393 LPRVITDIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMT 572
LPRVITDI++TDFL +IVI+HGYQPT++YP+YPDL K++ RM N+L FLHTWYNN+
Sbjct: 61 LPRVITDIFWTDFLERMIVISHGYQPTFDYPSYPDLTPDKMFQRMSNILTFLHTWYNNLV 120
Query: 573 FL 578
++
Sbjct: 121 YV 122
[9][TOP]
>UniRef100_Q85055 Atkinsonella hypoxylon virus segment 1 n=1 Tax=Atkinsonella
hypoxylon virus RepID=Q85055_AHV
Length = 665
Score = 131 bits (329), Expect = 4e-29
Identities = 81/215 (37%), Positives = 113/215 (52%), Gaps = 23/215 (10%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R+ +H IKEYG PF TDS + + + +F PT L R+HISKRD
Sbjct: 220 RSTVHNIKEYGFPFR--------PTTDSARNETL--LDLWFKKVPTELLVRSHISKRDN- 268
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LKVRPVY I+I IE ML +PL QARK CCIMYGLETIRG +E+I+ +++F
Sbjct: 269 LKVRPVYNAPMIYIRIECMLFYPLLAQARKRDCCIMYGLETIRGGMNELERISNAFNSFL 328
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQP-----------------------T 473
+DWS +D P I++ ++ +L + I+I+HGY +
Sbjct: 329 LIDWSRFDHLAPFTISNFFFKKWLPTKILIDHGYAQISNYHDHVHSFSAQAQSHGIPMIS 388
Query: 474 YEYPTYPDLDEHKLYHRMDNLLHFLHTWYNNMTFL 578
EY T P+ ++ NL+ FL WY +M F+
Sbjct: 389 KEYQTPPEAT--VFAKKVLNLISFLERWYRDMVFV 421
[10][TOP]
>UniRef100_Q6X9T6 Putative RNA-dependent RNA polymerase n=1 Tax=Ceratocystis polonica
partitivirus RepID=Q6X9T6_9VIRU
Length = 663
Score = 123 bits (309), Expect = 9e-27
Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 21/213 (9%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R+ +H IK YGLPF + + ++ +F PT L R+HIS
Sbjct: 224 RSTVHNIKLYGLPFKPHSYEARNKIL----------LELWFKKIPTELLVRSHISNPK-K 272
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LKVRPV IF+ IE ML +PL Q RK C IMYGLETIRG IE +A +S F
Sbjct: 273 LKVRPVNNAPMIFLRIECMLFYPLLAQLRKQQCSIMYGLETIRGGMMEIESLATRFSNFM 332
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTY----------------P 494
+DWS +DQ +P + D++Y D++ +LI+++ GY + Y +
Sbjct: 333 MIDWSKFDQTVPFTLVDMFYQDWIPTLILVDSGYAKIHNYNDHVHSFAAQARKLGVHGDS 392
Query: 495 DLDEHK-----LYHRMDNLLHFLHTWYNNMTFL 578
+L+E ++++NLL F++TW+ M ++
Sbjct: 393 NLNEAPPEAAVFANKVENLLKFINTWFKEMVYI 425
[11][TOP]
>UniRef100_Q5DM90 RNA-dependent RNA polymerase n=1 Tax=Ceratocystis resinifera virus
1 RepID=Q5DM90_9VIRU
Length = 663
Score = 122 bits (306), Expect = 2e-26
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 21/213 (9%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R+ +H IK YGLPF + ++ +F PT L R+HIS
Sbjct: 224 RSTVHNIKLYGLPFKPHSYAARNKILQE----------LWFKKIPTELLVRSHISNPK-K 272
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LKVRPV IF+ IE ML +PL Q RK C IMYGLETIRG IE +A +S F
Sbjct: 273 LKVRPVNNAPMIFLRIECMLFYPLLAQLRKQQCSIMYGLETIRGGMMEIESLATRFSNFM 332
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTY----------------P 494
+DWS +DQ +P + D++Y D++ +LI+++ GY + Y +
Sbjct: 333 MIDWSKFDQTVPFTLVDMFYQDWIPTLILVDSGYAKIHNYNDHVHSFAAQARKLGVHGNS 392
Query: 495 DLDEHK-----LYHRMDNLLHFLHTWYNNMTFL 578
+L+E ++++NLL F++TW+ M ++
Sbjct: 393 NLNEAPPETAIFANKVENLLKFINTWFKEMVYI 425
[12][TOP]
>UniRef100_Q6EM35 Putative RNA-dependent RNA polymerase n=1 Tax=Ceratocystis polonica
partitivirus RepID=Q6EM35_9VIRU
Length = 663
Score = 122 bits (305), Expect = 3e-26
Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 23/215 (10%)
Frame = +3
Query: 3 RTLIHFIKEYGLPF--NIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRD 176
R+ +H IK YGLPF + +A ++T L +F PT L R+HIS
Sbjct: 224 RSTVHNIKLYGLPFKPHSYKARNQTLL------------ELWFKKIPTELLVRSHISNPK 271
Query: 177 GPLKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYST 356
LKVRPV IF+ IE ML +PL Q RK C IMYG ETIRG IE +A +S
Sbjct: 272 -KLKVRPVNNAPMIFLRIECMLFYPLLAQLRKQQCSIMYGFETIRGGMMEIESLATRFSN 330
Query: 357 FFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEYPTY--------------- 491
F +DWS +DQ +P + D++Y D++ +LI+I+ GY + Y +
Sbjct: 331 FMMIDWSKFDQTVPFTLVDMFYQDWIPTLILIDSGYAKIHNYNDHVHSFAAQARKLGVHG 390
Query: 492 -PDLDE-----HKLYHRMDNLLHFLHTWYNNMTFL 578
+L+E ++++NLL F++TW+ M ++
Sbjct: 391 NSNLNEAPPEASVFANKVENLLKFINTWFKEMVYI 425
[13][TOP]
>UniRef100_Q8QY51 Putative RNA dependent RNA polymerase n=1 Tax=Heterobasidion
annosum P-type partitivirus RepID=Q8QY51_9VIRU
Length = 734
Score = 89.4 bits (220), Expect = 2e-16
Identities = 54/160 (33%), Positives = 84/160 (52%)
Frame = +3
Query: 3 RTLIHFIKEYGLPFNIIQADDKTELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGP 182
R ++H IK G P ++ KT + Y N PT+++ R+ ISK
Sbjct: 245 RRIVHNIKYTGWPIPHDPSESKTSFLQRML--YWTLMN------PTVMYVRSQISKIT-K 295
Query: 183 LKVRPVYAVDDIFIIIELMLTFPLTIQARKPSCCIMYGLETIRGSNRYIEQIARDYSTFF 362
LKVRPVY +F+++E MLT L Q RKP CI++ ETIRG + +I+ +++ F
Sbjct: 296 LKVRPVYNAPMLFLMLEAMLTLGLMAQCRKPDNCILWSYETIRGGMHELHRISTEFNVFM 355
Query: 363 SLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPTYEY 482
D+S +DQ P I ++ F+ +I ++ GYQ + Y
Sbjct: 356 GFDYSRFDQLAPFTIIYHFWATFIPMIIRVDRGYQQSTIY 395
[14][TOP]
>UniRef100_A7REC6 Putative RdRp n=1 Tax=Vicia faba partitivirus 1 RepID=A7REC6_9VIRU
Length = 576
Score = 73.9 bits (180), Expect = 8e-12
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Frame = +3
Query: 132 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQ--ARKPSCCIMYGLET 305
Y F R H+ + D P KVR V+ ++ ELM +PL + AR P +++G ET
Sbjct: 202 YWNTAFARQHLVEDDDPDKVRLVFGAPSTLLMAELMFIWPLQVSLLARGPQSPMLWGYET 261
Query: 306 IRGSNRYIEQIARD----YSTFFSLDWSSYDQRLPRVITDIYYTDFLRSLIVINHGYQPT 473
+ G + A D YST +LDWS +D+ + + +R + GY PT
Sbjct: 262 LTGGWSRLFSWASDTMPRYSTVLTLDWSRFDKDARHTVIRDIHAMIMRPMFTFTEGYHPT 321
Query: 474 YEYPTYPDLDEHKL 515
YP PD + +L
Sbjct: 322 ISYPNAPDTNPDRL 335
[15][TOP]
>UniRef100_C0STM0 RNA-dependent RNA polymerase n=1 Tax=Flammulina velutipes browning
virus RepID=C0STM0_9VIRU
Length = 580
Score = 59.3 bits (142), Expect = 2e-07
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Frame = +3
Query: 132 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQAR-KPSCCIMYGLETI 308
YP + T++ I P KVR ++ V + +++E M +PL R + +++G ET+
Sbjct: 199 YPINIHTKSAIIGIHDPNKVRTIFGVPKLTVMVEAMFFWPLFRYYRFEQQSPLLWGYETM 258
Query: 309 RGS----NRYIEQIARDYSTFFSLDWSSYDQR-LPRVITDIYYTDFLRSLIVINHGYQPT 473
G N + + SLDWS +D R L VI D+Y ++S N+GY PT
Sbjct: 259 LGGWYKLNHELHLNPFYQGSILSLDWSFFDGRALFSVINDLYSDKGVKSYFEFNNGYIPT 318
Query: 474 YEYP---TYPDLDEHKLYHRMDNLLHF 545
+YP T+P H L+ M L F
Sbjct: 319 VDYPDSSTHPQ-KLHNLWDWMLTALKF 344
[16][TOP]
>UniRef100_Q4KUU4 Putative RNA dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=Q4KUU4_9VIRU
Length = 616
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +3
Query: 69 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 242
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 243 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 410
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 411 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHK 512
I YT ++S + GY PT+ P +P ++ K
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDK 360
[17][TOP]
>UniRef100_D0EP81 Putative truncated RNA-dependent RNA polymerase n=1 Tax=Beet
cryptic virus 1 RepID=D0EP81_9VIRU
Length = 559
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Frame = +3
Query: 132 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQAR-KPSCC-IMYGLET 305
+P LL T+ I K+D P K+R ++ +II E ML + + PS +++G ET
Sbjct: 174 FPMLLHTKTAIVKQDDPNKMRTIWGASKPWIIAETMLYWEYIAWIKLNPSVTPMLWGYET 233
Query: 306 IRGSNRYIEQIARDY------STFFSLDWSSYDQRLP-RVITDIYYTDFLRSLIVINHGY 464
G ++ RD +F +LDWS +D+R ++ I YT R+ + + GY
Sbjct: 234 FTGG---WFRLNRDLFCGFLQRSFLTLDWSRFDKRAYFPLLRRILYT--ARTFLTFDEGY 288
Query: 465 QPTYEYPTYPDLDEHK 512
PT+ PT+P D K
Sbjct: 289 VPTHSAPTHPQWDHTK 304
[18][TOP]
>UniRef100_B2M1T3 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=B2M1T3_9VIRU
Length = 616
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +3
Query: 69 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 242
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 243 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 410
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 411 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHK 512
I YT ++S + GY PT+ P +P ++ K
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDK 360
[19][TOP]
>UniRef100_B2CGP3 Putative RNA-dependent RNA polymerase n=1 Tax=Beet cryptic virus 1
RepID=B2CGP3_9VIRU
Length = 616
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Frame = +3
Query: 132 YPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLTIQAR-KPSCC-IMYGLET 305
+P LL T+ I K+D P K+R ++ +II E ML + + PS +++G ET
Sbjct: 230 FPMLLHTKTAIVKQDDPNKMRTIWGASKPWIIAETMLYWEYIAWIKLNPSVTPMLWGYET 289
Query: 306 IRGSNRYIEQIARDY------STFFSLDWSSYDQRLP-RVITDIYYTDFLRSLIVINHGY 464
G ++ RD +F +LDWS +D+R ++ I YT R+ + + GY
Sbjct: 290 FTGG---WFRLNRDLFCGFLQRSFLTLDWSRFDKRAYFPLLRRILYT--ARTFLTFDEGY 344
Query: 465 QPTYEYPTYPDLDEHK 512
PT+ PT+P D K
Sbjct: 345 VPTHSAPTHPQWDHTK 360
[20][TOP]
>UniRef100_A3R744 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=A3R744_9VIRU
Length = 616
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +3
Query: 69 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 242
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 243 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 410
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 411 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHK 512
I YT ++S + GY PT+ P +P ++ K
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDK 360
[21][TOP]
>UniRef100_A3R742 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=A3R742_9VIRU
Length = 616
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +3
Query: 69 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 242
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 243 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 410
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 411 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHK 512
I YT ++S + GY PT+ P +P ++ K
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDK 360
[22][TOP]
>UniRef100_A3R739 Putative RNA-dependent RNA polymerase n=1 Tax=Vicia cryptic virus
RepID=A3R739_9VIRU
Length = 616
Score = 57.4 bits (137), Expect = 8e-07
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 6/154 (3%)
Frame = +3
Query: 69 TELTDSDVQKYIDEANSFFNDYPTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELML-- 242
T+ T D Y+ N F +P LL T+ I K+D P K+R ++ +II + M
Sbjct: 213 TDTTGLDNNGYL--YNRFI--FPMLLHTKTAIVKKDDPNKMRTIWGASKPWIIADTMFYW 268
Query: 243 TFPLTIQARKPSCCIMYGLETIRGSNRYIEQI---ARDYSTFFSLDWSSYDQRLP-RVIT 410
+ ++ S +++G ET G + Q+ +F +LDWS +D+R ++
Sbjct: 269 EYQAWVKHNPGSTPMLWGFETFTGGWFRLNQLLFCGLIRRSFITLDWSRFDKRAYFPLLR 328
Query: 411 DIYYTDFLRSLIVINHGYQPTYEYPTYPDLDEHK 512
I YT ++S + GY PT+ P +P ++ K
Sbjct: 329 KIMYT--VKSFLTFEEGYVPTHAAPNHPQWNQDK 360
[23][TOP]
>UniRef100_A2VA07 RNA-dependent RNA polymerase (Fragment) n=1 Tax=Ophiostoma quercus
partitivirus RepID=A2VA07_9VIRU
Length = 132
Score = 56.2 bits (134), Expect = 2e-06
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Frame = +3
Query: 138 TLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLT---IQARKPSCCIMYGLETI 308
T L +R+H+ + D P K+R V+ V + +++E M + + + +++G ETI
Sbjct: 8 TYLHSRSHMVQSDKPDKIRAVFGVPKLLLMVENMFIWNIQKDYLNGPLGKSPLLWGFETI 67
Query: 309 RGS-NRYIEQI-ARDYSTFFSLDWSSYDQR-LPRVITDIYYTDFLRSLIVINHGYQPT 473
RG + I Q+ ++ S+ S DWS +D + L VI D++ D +S N GY+P+
Sbjct: 68 RGGWMKLISQLTSKPLSSIISADWSGFDHKALHEVIDDVH--DIWKSWFDFNQGYEPS 123
[24][TOP]
>UniRef100_Q64FP0 RNA dependent RNA polymerase n=1 Tax=White clover cryptic virus 1
RepID=Q64FP0_WCCV1
Length = 616
Score = 54.3 bits (129), Expect = 7e-06
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Frame = +3
Query: 102 IDEANSFFNDY--PTLLFTRNHISKRDGPLKVRPVYAVDDIFIIIELMLTFPLT--IQAR 269
+++ FFN + P LL T+ I K++ P K+R ++ +II E M + I+
Sbjct: 218 LEQTGYFFNRFIFPMLLHTKTAIVKKNDPNKMRTIWGASKPWIIAETMFYWEYLAWIKHN 277
Query: 270 KPSCCIMYGLETIRGS------NRYIEQIARDYSTFFSLDWSSYDQRLP-RVITDIYYTD 428
+ +++G ET G + I R +F +LDWS +D+R ++ I YT
Sbjct: 278 PGATPMLWGYETFTGGWFRLNHELFCGLIQR---SFLTLDWSRFDKRAYFPLLRRILYT- 333
Query: 429 FLRSLIVINHGYQPTYEYPTYPDLDEHKL 515
+++ + GY PT+ PT+P + +
Sbjct: 334 -VKTFLTFEEGYVPTHAAPTHPQWSQENI 361