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[1][TOP]
>UniRef100_Q64959 ORF protein (Fragment) n=1 Tax=Artichoke italian latent virus
RepID=Q64959_9SECO
Length = 510
Score = 211 bits (537), Expect = 3e-53
Identities = 101/176 (57%), Positives = 125/176 (71%), Gaps = 4/176 (2%)
Frame = +3
Query: 60 IQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIHGIDSQPDLCKQINYKQR 239
IQ+ +TANFG GA+FW++PLS+P AP+ VE+KFEFYIRI GID PDLC+QINYKQR
Sbjct: 284 IQAACCATANFGDSGARFWIMPLSAPRAPQTVETKFEFYIRILGIDVIPDLCRQINYKQR 343
Query: 240 FGWFMVKP-EGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAIMCATTGMHWGKCIVHFT 416
FGWFM+ P + T E +PSR+ N+ +K C NF NAFAIMCATTGMHWG+CI+HFT
Sbjct: 344 FGWFMISPSDKTTTELDFKIPSRIGNIGVKNTKCVNFTNAFAIMCATTGMHWGRCILHFT 403
Query: 417 WAWKHNIEASKMKGNLS---FGTGMGTKDVHYGETRVFSIYDNSYSIPFEFGSFAG 575
W+W N EA K +S + + + G R +YDN+YSIPFEFGSFAG
Sbjct: 404 WSWHRNTEAGKNAREISQSRLEWVIVLQHIILG-IRGILVYDNAYSIPFEFGSFAG 458
[2][TOP]
>UniRef100_UPI0000163D16 coat protein n=1 Tax=Grapevine chrome mosaic virus
RepID=UPI0000163D16
Length = 514
Score = 209 bits (531), Expect = 2e-52
Identities = 102/196 (52%), Positives = 133/196 (67%), Gaps = 5/196 (2%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
Q QMPH D L+IQSPFY+TANFG GA+FWV P+SSPMAPE +ESK E+YI+
Sbjct: 267 QLSQMPHVDCDVDVVSSLKIQSPFYATANFGDSGARFWVTPMSSPMAPETMESKLEYYIQ 326
Query: 183 IHGIDSQPDLCKQINYKQRFGWF-MVKPEG--TDKEFQMFVPSRVSNLVIKGVDCTNFVN 353
I GID+ P +C+QINY QRF WF +++P K ++ +PSRV N+ K TN+VN
Sbjct: 327 ILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSKILKLTLPSRVCNIAYKEATVTNYVN 386
Query: 354 AFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV--HYGETRVFSI 527
AFAIMCATTGMH GKCI+HF+W ++G++SF +GMG + H+GE +
Sbjct: 387 AFAIMCATTGMHAGKCILHFSWTLNKGTSFKDLQGHISFYSGMGDSTIGEHHGEFHLGGP 446
Query: 528 YDNSYSIPFEFGSFAG 575
+S ++PFEFGSFAG
Sbjct: 447 LSSSLAVPFEFGSFAG 462
[3][TOP]
>UniRef100_P13026 Coat protein n=1 Tax=Grapevine chrome mosaic virus RepID=POL2_GCMV
Length = 1324
Score = 209 bits (531), Expect = 2e-52
Identities = 102/196 (52%), Positives = 133/196 (67%), Gaps = 5/196 (2%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
Q QMPH D L+IQSPFY+TANFG GA+FWV P+SSPMAPE +ESK E+YI+
Sbjct: 1077 QLSQMPHVDCDVDVVSSLKIQSPFYATANFGDSGARFWVTPMSSPMAPETMESKLEYYIQ 1136
Query: 183 IHGIDSQPDLCKQINYKQRFGWF-MVKPEG--TDKEFQMFVPSRVSNLVIKGVDCTNFVN 353
I GID+ P +C+QINY QRF WF +++P K ++ +PSRV N+ K TN+VN
Sbjct: 1137 ILGIDADPPMCRQINYDQRFAWFTLLRPPDPKLSKILKLTLPSRVCNIAYKEATVTNYVN 1196
Query: 354 AFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV--HYGETRVFSI 527
AFAIMCATTGMH GKCI+HF+W ++G++SF +GMG + H+GE +
Sbjct: 1197 AFAIMCATTGMHAGKCILHFSWTLNKGTSFKDLQGHISFYSGMGDSTIGEHHGEFHLGGP 1256
Query: 528 YDNSYSIPFEFGSFAG 575
+S ++PFEFGSFAG
Sbjct: 1257 LSSSLAVPFEFGSFAG 1272
[4][TOP]
>UniRef100_UPI0000163DFE capsid protein n=1 Tax=Beet ringspot virus RepID=UPI0000163DFE
Length = 520
Score = 203 bits (517), Expect = 7e-51
Identities = 97/193 (50%), Positives = 129/193 (66%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
Q QMPH D+ L+IQSPF+STANFG+ G+ F+V L +PMAPE VE+ E+YI+
Sbjct: 266 QLAQMPHVDVEVNVDASLQIQSPFFSTANFGNSGSAFYVSTLCAPMAPETVETGSEYYIQ 325
Query: 183 IHGIDSQPDLCKQINYKQRFGWFMVKPEGTDK--EFQMFVPSRVSNLVIKGVDCTNFVNA 356
I GI++ P LC++INYKQRF W +++ K ++ +PSR+ NL K V TNFVNA
Sbjct: 326 IKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKVKIPSRIGNLSSKHVKVTNFVNA 385
Query: 357 FAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHYGETRVFSIYDN 536
AI+CATTGMH G C +HF+W W H E K G L F GMG + H G+T ++ N
Sbjct: 386 LAILCATTGMHHGNCTIHFSWLW-HPAELGKQLGRLKFVQGMGINNEHIGDTMCYNSLSN 444
Query: 537 SYSIPFEFGSFAG 575
++S+PF+FGSFAG
Sbjct: 445 THSVPFQFGSFAG 457
[5][TOP]
>UniRef100_P14547 Coat protein n=1 Tax=Beet ringspot virus RepID=POL2_BRSV
Length = 1357
Score = 203 bits (517), Expect = 7e-51
Identities = 97/193 (50%), Positives = 129/193 (66%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
Q QMPH D+ L+IQSPF+STANFG+ G+ F+V L +PMAPE VE+ E+YI+
Sbjct: 1103 QLAQMPHVDVEVNVDASLQIQSPFFSTANFGNSGSAFYVSTLCAPMAPETVETGSEYYIQ 1162
Query: 183 IHGIDSQPDLCKQINYKQRFGWFMVKPEGTDK--EFQMFVPSRVSNLVIKGVDCTNFVNA 356
I GI++ P LC++INYKQRF W +++ K ++ +PSR+ NL K V TNFVNA
Sbjct: 1163 IKGIEANPGLCREINYKQRFAWCLLECLDNSKASPIKVKIPSRIGNLSSKHVKVTNFVNA 1222
Query: 357 FAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHYGETRVFSIYDN 536
AI+CATTGMH G C +HF+W W H E K G L F GMG + H G+T ++ N
Sbjct: 1223 LAILCATTGMHHGNCTIHFSWLW-HPAELGKQLGRLKFVQGMGINNEHIGDTMCYNSLSN 1281
Query: 537 SYSIPFEFGSFAG 575
++S+PF+FGSFAG
Sbjct: 1282 THSVPFQFGSFAG 1294
[6][TOP]
>UniRef100_Q88483 P2 protein n=1 Tax=Tomato black ring virus RepID=Q88483_9SECO
Length = 1344
Score = 190 bits (482), Expect = 8e-47
Identities = 90/195 (46%), Positives = 128/195 (65%), Gaps = 4/195 (2%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
+ Q+PH D+ L+IQSPF++TANFG +G F++ L +P+APE +E+ F++YI
Sbjct: 1099 ELAQIPHVDVTLDAKATLQIQSPFFATANFGDDGTAFYIATLCAPLAPETMETGFQYYIH 1158
Query: 183 IHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNA 356
IHGI+++ LC++INY Q F WFM++ T + +P+R++NL K V TNFVNA
Sbjct: 1159 IHGINAKAHLCREINYNQHFAWFMLEHLDTNTTGAVSLKIPARMANLTSKEVQVTNFVNA 1218
Query: 357 FAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV--HYGETRVFSIY 530
AIMCATTGMH+GKC +HF+W W + + + G +S TGMG V H+G F
Sbjct: 1219 LAIMCATTGMHFGKCTLHFSWGW-YRGKLADQSGAVSLQTGMGRAAVAEHFGGKHNFCYP 1277
Query: 531 DNSYSIPFEFGSFAG 575
S+S+PF+FGSFAG
Sbjct: 1278 ATSFSLPFQFGSFAG 1292
[7][TOP]
>UniRef100_UPI000016782B coat protein n=1 Tax=Tomato black ring virus RepID=UPI000016782B
Length = 511
Score = 186 bits (472), Expect = 1e-45
Identities = 89/195 (45%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
+ Q+PH D+ L+IQSPF++TANFG +G F++ L +P+APE +E+ F++YI
Sbjct: 266 ELAQIPHVDVTLDTKATLQIQSPFFATANFGDDGTAFYISTLCAPLAPETMETGFQYYIH 325
Query: 183 IHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNA 356
IHGI + +LC++INY Q F WFM++ T + +P+R++NL K V TNFVNA
Sbjct: 326 IHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVSLKIPARMANLTSKEVQITNFVNA 385
Query: 357 FAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV--HYGETRVFSIY 530
AIMCATTGMH+GKC +HF+W W + + G S TGMG V H+G F+
Sbjct: 386 LAIMCATTGMHFGKCTLHFSWNWFRG-KLADQSGVFSIQTGMGKSTVAEHFGGRHSFNYP 444
Query: 531 DNSYSIPFEFGSFAG 575
++S+PF+FGSFAG
Sbjct: 445 ATNFSLPFQFGSFAG 459
[8][TOP]
>UniRef100_Q8B8X2 Polyprotein n=1 Tax=Tomato black ring virus RepID=Q8B8X2_9SECO
Length = 1343
Score = 186 bits (472), Expect = 1e-45
Identities = 89/195 (45%), Positives = 126/195 (64%), Gaps = 4/195 (2%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
+ Q+PH D+ L+IQSPF++TANFG +G F++ L +P+APE +E+ F++YI
Sbjct: 1098 ELAQIPHVDVTLDTKATLQIQSPFFATANFGDDGTAFYISTLCAPLAPETMETGFQYYIH 1157
Query: 183 IHGIDSQPDLCKQINYKQRFGWFMVK--PEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNA 356
IHGI + +LC++INY Q F WFM++ T + +P+R++NL K V TNFVNA
Sbjct: 1158 IHGIKVKANLCREINYNQHFAWFMLEHLDTNTTGMVSLKIPARMANLTSKEVQITNFVNA 1217
Query: 357 FAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDV--HYGETRVFSIY 530
AIMCATTGMH+GKC +HF+W W + + G S TGMG V H+G F+
Sbjct: 1218 LAIMCATTGMHFGKCTLHFSWNWFRG-KLADQSGVFSIQTGMGKSTVAEHFGGRHSFNYP 1276
Query: 531 DNSYSIPFEFGSFAG 575
++S+PF+FGSFAG
Sbjct: 1277 ATNFSLPFQFGSFAG 1291
[9][TOP]
>UniRef100_Q6XPY1 Viral coat protein (Fragment) n=1 Tax=Grapevine Anatolian ringspot
virus RepID=Q6XPY1_9SECO
Length = 330
Score = 175 bits (444), Expect = 2e-42
Identities = 92/193 (47%), Positives = 121/193 (62%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
Q QMPH D+ G + L+IQSPFY+TAN G A FWV P+SSPMAPE +ES E+YI+
Sbjct: 91 QLCQMPHVDVDVGVTASLKIQSPFYATANLGDSDAAFWVTPMSSPMAPEAIESALEYYIQ 150
Query: 183 IHGIDSQPDLCKQINYKQRFGWF-MVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAF 359
I GI++ LC+ INYKQ FGWF +V+ T+KE + +PSR++N+ K + N VNAF
Sbjct: 151 ILGIEADTPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSRIANIEYKEAEVINHVNAF 210
Query: 360 AIMCATTGMHWGK-CIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHYGETRVFSIYDN 536
+IMCATTGM WG +H H +A K S G+ T+ H G+ ++ +
Sbjct: 211 SIMCATTGMQWGSPFALHLD---SHMTQADDQKICESHSAGITTE--HIGDIKMCGVLAT 265
Query: 537 SYSIPFEFGSFAG 575
S IPFE GSFAG
Sbjct: 266 SQVIPFEIGSFAG 278
[10][TOP]
>UniRef100_Q6JX06 P2 protein n=1 Tax=Grapevine Anatolian ringspot virus
RepID=Q6JX06_9SECO
Length = 1350
Score = 175 bits (444), Expect = 2e-42
Identities = 92/193 (47%), Positives = 121/193 (62%), Gaps = 2/193 (1%)
Frame = +3
Query: 3 QTGQMPHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIR 182
Q QMPH D+ G + L+IQSPFY+TAN G A FWV P+SSPMAPE +ES E+YI+
Sbjct: 1111 QLCQMPHVDVDVGVTASLKIQSPFYATANLGDSDAAFWVTPMSSPMAPEAIESALEYYIQ 1170
Query: 183 IHGIDSQPDLCKQINYKQRFGWF-MVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAF 359
I GI++ LC+ INYKQ FGWF +V+ T+KE + +PSR++N+ K + N VNAF
Sbjct: 1171 ILGIEADTPLCRAINYKQAFGWFTLVRRSTTNKEIALKIPSRIANIEYKEAEVINHVNAF 1230
Query: 360 AIMCATTGMHWGK-CIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHYGETRVFSIYDN 536
+IMCATTGM WG +H H +A K S G+ T+ H G+ ++ +
Sbjct: 1231 SIMCATTGMQWGSPFALHLD---SHMTQADDQKICESHSAGITTE--HIGDIKMCGVLAT 1285
Query: 537 SYSIPFEFGSFAG 575
S IPFE GSFAG
Sbjct: 1286 SQVIPFEIGSFAG 1298
[11][TOP]
>UniRef100_Q1T7B1 Coat protein (Fragment) n=1 Tax=Cycas necrotic stunt virus
RepID=Q1T7B1_CNSV
Length = 569
Score = 119 bits (299), Expect = 1e-25
Identities = 60/187 (32%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Frame = +3
Query: 21 HCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIHGIDS 200
H D G + +L I+ FY+++ +G GA + L SPM+P +++ F+ +I G
Sbjct: 284 HVDTDTGVAFDLPIKDAFYASSVYGDSGAVIQITCLCSPMSPNAIKAPFDMVFKIKGFTP 343
Query: 201 QPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAIMCATT 380
+C+ IN+ QRFGWF V+P + ++ + ++L + + T + NAF MC T+
Sbjct: 344 DAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVTGYTNAFLQMCQTS 403
Query: 381 GMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSYSIPF 554
MH+G I+HF+W + A+ G ++ G G ++ ++ G R FSIY+ ++P
Sbjct: 404 TMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFRGHCRNFSIYEGKATVPL 463
Query: 555 EFGSFAG 575
E G+FAG
Sbjct: 464 ELGTFAG 470
[12][TOP]
>UniRef100_UPI0000164A26 capsid protein n=1 Tax=Cycas necrotic stunt virus
RepID=UPI0000164A26
Length = 564
Score = 117 bits (294), Expect = 5e-25
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Frame = +3
Query: 21 HCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIHGIDS 200
H D G + +L I+ FY+++ +G GA V L SPM+P +++ F+ +I G
Sbjct: 272 HVDTDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMIFKIRGFTP 331
Query: 201 QPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAIMCATT 380
+C+ IN+ QRFGWF V+P + ++ + ++L + + T + NAF MC T+
Sbjct: 332 DAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVTGYTNAFLQMCQTS 391
Query: 381 GMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSYSIPF 554
MH+G I+HF+W + A+ G ++ G G ++ ++ G R SIY+ ++P
Sbjct: 392 TMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFRGHCRNLSIYEGRATVPL 451
Query: 555 EFGSFAG 575
E G+FAG
Sbjct: 452 ELGTFAG 458
[13][TOP]
>UniRef100_Q8QVU9 Coat protein n=1 Tax=Cycas necrotic stunt virus RepID=POL2_CNSV
Length = 1240
Score = 117 bits (294), Expect = 5e-25
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 2/187 (1%)
Frame = +3
Query: 21 HCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIHGIDS 200
H D G + +L I+ FY+++ +G GA V L SPM+P +++ F+ +I G
Sbjct: 955 HVDTDTGVAFDLPIKDAFYASSVYGDSGAVIQVTCLCSPMSPNAIKAPFDMIFKIRGFTP 1014
Query: 201 QPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAIMCATT 380
+C+ IN+ QRFGWF V+P + ++ + ++L + + T + NAF MC T+
Sbjct: 1015 DAPMCRTINFTQRFGWFAVEPTTSTGAIKLKIWPVSNHLESEDMKVTGYTNAFLQMCQTS 1074
Query: 381 GMHWGKCIVHFTWA-WKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSYSIPF 554
MH+G I+HF+W + A+ G ++ G G ++ ++ G R SIY+ ++P
Sbjct: 1075 TMHFGSVIIHFSWTLFGGTTNAATAGGVVTIAEGFGPEEENFRGHCRNLSIYEGRATVPL 1134
Query: 555 EFGSFAG 575
E G+FAG
Sbjct: 1135 ELGTFAG 1141
[14][TOP]
>UniRef100_Q8B5P8 Coat protein n=1 Tax=Tobacco ringspot virus RepID=Q8B5P8_TRSV
Length = 515
Score = 65.1 bits (157), Expect = 4e-09
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 5/191 (2%)
Frame = +3
Query: 18 PHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH--G 191
PH + G E+ I++ F+S A + ++PLS P+AP+ +EF + I+
Sbjct: 282 PHQIMHGDGQFEIAIKTRFHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHINTWR 341
Query: 192 IDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAI 365
DSQ P + F +KP+ +P + + K T N +
Sbjct: 342 PDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLSW 401
Query: 366 MCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSY 542
+ A TG H+G+ V +W + +A +G++S T ++ G+ R++ +
Sbjct: 402 LVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTEA 459
Query: 543 SIPFEFGSFAG 575
IP GS+AG
Sbjct: 460 EIPIFLGSYAG 470
[15][TOP]
>UniRef100_Q88894 Capsid protein n=1 Tax=Tobacco ringspot virus RepID=CAPSD_TRSV
Length = 515
Score = 63.2 bits (152), Expect = 1e-08
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
Frame = +3
Query: 18 PHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH--G 191
PH + G E+ I++ +S A + ++PLS P+AP+ +EF + I+
Sbjct: 282 PHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHINTWR 341
Query: 192 IDSQPDLCKQINYKQRFGWFM---VKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFA 362
DSQ + + + WF +KP+ +P + + K T N +
Sbjct: 342 PDSQVH-PPMFSSSELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLS 400
Query: 363 IMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNS 539
+ A TG H+G+ V +W + +A +G++S T ++ G+ R++ +
Sbjct: 401 WLVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTE 458
Query: 540 YSIPFEFGSFAG 575
IP GS+AG
Sbjct: 459 AEIPIFLGSYAG 470
[16][TOP]
>UniRef100_Q8B5P7 Coat protein n=1 Tax=Tobacco ringspot virus RepID=Q8B5P7_TRSV
Length = 515
Score = 62.0 bits (149), Expect = 3e-08
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 5/191 (2%)
Frame = +3
Query: 18 PHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH--G 191
PH + G E+ I++ +S A + ++PLS P+AP+ +EF + I
Sbjct: 282 PHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHIDTWR 341
Query: 192 IDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAI 365
DSQ P + F +KP+ +P + + K T N +
Sbjct: 342 PDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLSW 401
Query: 366 MCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSY 542
+ A TG H+G+ V +W + +A +G++S T ++ G+ R++ +
Sbjct: 402 LVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTEA 459
Query: 543 SIPFEFGSFAG 575
IP GS+AG
Sbjct: 460 EIPIFLGSYAG 470
[17][TOP]
>UniRef100_UPI00003E1862 capsid protein n=1 Tax=Tobacco ringspot virus RepID=UPI00003E1862
Length = 513
Score = 61.6 bits (148), Expect = 4e-08
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 5/191 (2%)
Frame = +3
Query: 18 PHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH--G 191
PH + G E+ I++ +S A + ++PLS P+AP+ +EF + I
Sbjct: 280 PHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHIDTWR 339
Query: 192 IDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAI 365
DSQ P + F +KP+ +P + + K T N +
Sbjct: 340 PDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLSW 399
Query: 366 MCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSY 542
+ A TG H+G+ V +W + +A +G++S T ++ G+ R++ +
Sbjct: 400 LVAATGWHYGE--VDLCISWPRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTEA 457
Query: 543 SIPFEFGSFAG 575
IP GS+AG
Sbjct: 458 EIPIFLGSYAG 468
[18][TOP]
>UniRef100_Q6UR06 Coat protein n=1 Tax=Tobacco ringspot virus RepID=POL2_TRSV
Length = 1101
Score = 61.6 bits (148), Expect = 4e-08
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 5/191 (2%)
Frame = +3
Query: 18 PHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH--G 191
PH + G E+ I++ +S A + ++PLS P+AP+ +EF + I
Sbjct: 868 PHQIMHGDGQFEIAIKTRLHSAATTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHIDTWR 927
Query: 192 IDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAI 365
DSQ P + F +KP+ +P + + K T N +
Sbjct: 928 PDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLSW 987
Query: 366 MCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSY 542
+ A TG H+G+ V +W + +A +G++S T ++ G+ R++ +
Sbjct: 988 LVAATGWHYGE--VDLCISWPRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTEA 1045
Query: 543 SIPFEFGSFAG 575
IP GS+AG
Sbjct: 1046 EIPIFLGSYAG 1056
[19][TOP]
>UniRef100_Q5L492 Coat protein (Fragment) n=1 Tax=Tobacco ringspot virus
RepID=Q5L492_TRSV
Length = 515
Score = 59.3 bits (142), Expect = 2e-07
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 5/191 (2%)
Frame = +3
Query: 18 PHCDIVEGGSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH--G 191
PH + G E+ ++ +S++ + ++PLS P+AP+ +EF + I
Sbjct: 282 PHQIMHGDGQFEIATKTRLHSSSTTEEGFGRLGILPLSGPIAPDAHVGSYEFIVHIDTWR 341
Query: 192 IDSQ--PDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAI 365
DSQ P + F +KP+ +P + + K T N +
Sbjct: 342 PDSQVHPPMFSSAELYNWFTLTNLKPDANTGVVNFDIPGYIHDFASKDATVTLASNPLSW 401
Query: 366 MCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHY-GETRVFSIYDNSY 542
+ A TG H+G+ V +W + +A +G++S T ++ G+ R++ +
Sbjct: 402 LVAATGWHYGE--VDLCISWSRSKQAQAQEGSVSITTNYRDWGAYWQGQARIYDLRRTEA 459
Query: 543 SIPFEFGSFAG 575
IP GS+AG
Sbjct: 460 EIPIFLGSYAG 470
[20][TOP]
>UniRef100_Q9IV56 Polyprotein n=1 Tax=Olive latent ringspot virus RepID=Q9IV56_9SECO
Length = 1145
Score = 55.1 bits (131), Expect = 4e-06
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 11/194 (5%)
Frame = +3
Query: 21 HCDIVEGGSGELRIQSPF------YSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYI- 179
H + GG+ + SPF Y + S G + +V + P+AP +K E+++
Sbjct: 908 HITLEGGGNFSFPLDSPFSSAPTRYVSTADSSSGCELYVDTICGPIAPADSVTKLEYFLH 967
Query: 180 --RIHGIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFV- 350
R+ G + P+L +I G + KE + +P R I DCT +
Sbjct: 968 FDRLEGTMTAPNLVAEI------GSLWCRVTSFLKE-DVDIPIRARIYDIAAKDCTLELA 1020
Query: 351 -NAFAIMCATTGMHWGKCIVHFTWAWKHNIEASKMKGNLSFGTGMGTKDVHYGETRVFSI 527
N F+ M A TG G+ V + +W N+EASK+KG++ F V Y V S
Sbjct: 1021 TNPFSKMIAATGFLEGQ--VTLSVSWSTNVEASKIKGHIIF--------VVYDADLVNSF 1070
Query: 528 YDNSYSIPFEFGSF 569
S +P GSF
Sbjct: 1071 DGASTVVPMAKGSF 1084
[21][TOP]
>UniRef100_Q9QRA5 Coat protein (Fragment) n=1 Tax=Tomato ringspot virus
RepID=Q9QRA5_9SECO
Length = 562
Score = 54.3 bits (129), Expect = 7e-06
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 3/191 (1%)
Frame = +3
Query: 12 QMPHCDIVEG-GSGELRIQSPFYSTANFGSEGAQFWVIPLSSPMAPEKVESKFEFYIRIH 188
Q PH + +G G+ L I +PF + A+F + + + ++ P +P ++KF F
Sbjct: 278 QRPHFILKDGQGAFSLPISTPF-AAASFLEDMLRLEIFAIAGPFSPRDNKAKFHFMCYFD 336
Query: 189 GIDSQPDLCKQINYKQRFGWFMVKPEGTDKEFQMFVPSRVSNLVIKGVDCTNFVNAFAIM 368
I+ + + I +Q F W + + D +++ P+R+ +++ D + +++
Sbjct: 337 HIELDEQVPRTIAGEQLFNWCVFQNFKID-DWRYEWPARLPDILDDKSDVLLRQHPLSLL 395
Query: 369 CATTGMHWGKCIVHFTWAWKHNIEASKMKGNLS--FGTGMGTKDVHYGETRVFSIYDNSY 542
++TG G+ F + W N A MKG+ S G G +++ T +
Sbjct: 396 ISSTGFFTGR--ASFVFQWGLNANAGNMKGSFSARLAFGKGVEEIEQTSTVHPLVGACEA 453
Query: 543 SIPFEFGSFAG 575
IP EF +F G
Sbjct: 454 RIPVEFKTFTG 464