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[1][TOP]
>UniRef100_Q10MU2 Os03g0295400 protein n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU2_ORYSJ
Length = 379
Score = 160 bits (405), Expect = 4e-38
Identities = 81/153 (52%), Positives = 110/153 (71%), Gaps = 6/153 (3%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+L PGQ I++E HA++G+G+VHAKWSPVATA+YRMLPEV LR + A+A LVA CP
Sbjct: 230 IARLGPGQAIELEVHAVKGIGKVHAKWSPVATAWYRMLPEVVLREEIKDADAEMLVAKCP 289
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP--ELAG----AVDLTRRREHFV 343
NVFD+ED+ G G+ V VARPRACT+CR+C+ P E+ G V+L R R+HF+
Sbjct: 290 VNVFDIEDL---GNGEKRAV-VARPRACTLCRQCVMGPTGEVMGPTVEQVELRRVRDHFI 345
Query: 344 FSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
F++ES+G PP LF +A+ +L KC+ V+ L
Sbjct: 346 FTIESTGALPPEMLFTEAVRILEEKCERVISEL 378
[2][TOP]
>UniRef100_C5XXF5 Putative uncharacterized protein Sb04g006420 n=1 Tax=Sorghum
bicolor RepID=C5XXF5_SORBI
Length = 370
Score = 158 bits (400), Expect = 2e-37
Identities = 76/147 (51%), Positives = 104/147 (70%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+L PGQ I++EAHA++GVG+VHAKWSPVATA+YRMLPEV + + + +A LV CP
Sbjct: 228 IARLGPGQAIELEAHAVKGVGKVHAKWSPVATAWYRMLPEVVILKDIEGDDAEELVKKCP 287
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+ G G VA+PRACT+CREC+ P V+L R R+HF+F++ES+
Sbjct: 288 VNVFDIEDL----GNGGKRAVVAKPRACTLCRECVMGPN-GNQVELRRVRDHFIFTIEST 342
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP LF +A+ +L KC+ V+ L
Sbjct: 343 GALPPEVLFTEAVKILEEKCERVISEL 369
[3][TOP]
>UniRef100_UPI00019857F6 PREDICTED: hypothetical protein n=1 Tax=Vitis vinifera
RepID=UPI00019857F6
Length = 372
Score = 157 bits (396), Expect = 4e-37
Identities = 78/147 (53%), Positives = 105/147 (71%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPVATA+YRMLPEV L + + +A LV CP
Sbjct: 229 IAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCP 288
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+A +G +VARPRACT+CRECIR + V + R + HF+F++ES+
Sbjct: 289 VNVFDIEDIA-KGKKK---ATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIEST 344
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP LF +A+ VL KC+ V+ L
Sbjct: 345 GALPPEVLFNEAVKVLEDKCERVITEL 371
[4][TOP]
>UniRef100_B9S9W7 DNA-directed RNA polymerase I/III subunits, putative n=1
Tax=Ricinus communis RepID=B9S9W7_RICCO
Length = 374
Score = 157 bits (396), Expect = 4e-37
Identities = 78/147 (53%), Positives = 101/147 (68%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPVATA+YRMLPEV L + A L CP
Sbjct: 231 VAKLGPGQEIELEAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCP 290
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+ G +VARPRACT+CRECIR E V L R ++HF+F++ES+
Sbjct: 291 VNVFDIEDI----GNGKKRATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIEST 346
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP LF +A+ VL KC+ V+ L
Sbjct: 347 GALPPEVLFTEAVKVLEDKCERVITEL 373
[5][TOP]
>UniRef100_A7Q9B1 Chromosome chr19 scaffold_66, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7Q9B1_VITVI
Length = 362
Score = 157 bits (396), Expect = 4e-37
Identities = 78/147 (53%), Positives = 105/147 (71%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPVATA+YRMLPEV L + + +A LV CP
Sbjct: 219 IAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCP 278
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+A +G +VARPRACT+CRECIR + V + R + HF+F++ES+
Sbjct: 279 VNVFDIEDIA-KGKKK---ATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIEST 334
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP LF +A+ VL KC+ V+ L
Sbjct: 335 GALPPEVLFNEAVKVLEDKCERVITEL 361
[6][TOP]
>UniRef100_Q9C6C2 RNA polymerase subunit; 10595-12672 n=1 Tax=Arabidopsis thaliana
RepID=Q9C6C2_ARATH
Length = 375
Score = 154 bits (389), Expect = 3e-36
Identities = 74/145 (51%), Positives = 102/145 (70%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPV TA+YRM PEV LR + A LV CP
Sbjct: 234 IAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCP 293
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+ G+G +VA+PR CT+C+EC+R +L VDL + HF+F++ES+
Sbjct: 294 QNVFDIEDM-GKGKK---RATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIEST 349
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLD 436
G PP LF +A+ +L AKC+ + D
Sbjct: 350 GSLPPEVLFTEAVKILEAKCEAITD 374
[7][TOP]
>UniRef100_Q8LD68 RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q8LD68_ARATH
Length = 375
Score = 154 bits (389), Expect = 3e-36
Identities = 74/145 (51%), Positives = 102/145 (70%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPV TA+YRM PEV LR + A LV CP
Sbjct: 234 IAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCP 293
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+ G+G +VA+PR CT+C+EC+R +L VDL + HF+F++ES+
Sbjct: 294 QNVFDIEDM-GKGKK---RATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIEST 349
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLD 436
G PP LF +A+ +L AKC+ + D
Sbjct: 350 GSLPPEVLFTEAVKILEAKCEAITD 374
[8][TOP]
>UniRef100_Q39215 RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q39215_ARATH
Length = 375
Score = 154 bits (389), Expect = 3e-36
Identities = 74/145 (51%), Positives = 102/145 (70%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPV TA+YRM PEV LR + A LV CP
Sbjct: 234 IAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCP 293
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+ G+G +VA+PR CT+C+EC+R +L VDL + HF+F++ES+
Sbjct: 294 QNVFDIEDM-GKGKK---RATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIEST 349
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLD 436
G PP LF +A+ +L AKC+ + D
Sbjct: 350 GSLPPEVLFTEAVKILEAKCEAITD 374
[9][TOP]
>UniRef100_Q39216 RNA polymerase subunit n=1 Tax=Arabidopsis thaliana
RepID=Q39216_ARATH
Length = 385
Score = 151 bits (382), Expect = 2e-35
Identities = 76/148 (51%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQEI++EAHA++G+G+ HAKWSPVATA+YRMLPEV L + A LV CP
Sbjct: 241 IAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCP 300
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR-LPELAGAVDLTRRREHFVFSVES 358
VFD+ED+ G +VARPR C++CRECIR E VDL R + HF+F++ES
Sbjct: 301 KKVFDIEDM----GQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIES 356
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G +PP LF +A+ +L KC+ V+ L
Sbjct: 357 TGSQPPEVLFNEAVKILEDKCERVISEL 384
[10][TOP]
>UniRef100_B4FAR4 Putative uncharacterized protein n=1 Tax=Zea mays
RepID=B4FAR4_MAIZE
Length = 372
Score = 150 bits (378), Expect = 5e-35
Identities = 75/147 (51%), Positives = 100/147 (68%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+L PGQ I++EAHA++G G VHAKWSPVATA+YRMLPEV + + + +A LV C
Sbjct: 230 IARLGPGQAIELEAHAVKGTGNVHAKWSPVATAWYRMLPEVVILKEVEGPQAEELVNKCR 289
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+A G VARPRACT+CREC+ P V+L R R+HF+F++ES+
Sbjct: 290 VNVFDIEDLA----NGGKRAVVARPRACTLCRECVMGPN-EKQVELRRVRDHFIFTIEST 344
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP LF +A+ +L KC V+ L
Sbjct: 345 GSMPPEVLFTEAVKILEEKCARVISEL 371
[11][TOP]
>UniRef100_C6TAS0 Putative uncharacterized protein n=1 Tax=Glycine max
RepID=C6TAS0_SOYBN
Length = 388
Score = 149 bits (377), Expect = 7e-35
Identities = 78/148 (52%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKL PGQEI++EAHA++G+G+ HAKWSPVATA+YRMLPEV L + A L CP
Sbjct: 244 LAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCP 303
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR-LPELAGAVDLTRRREHFVFSVES 358
NVFD+ED+ G+G VARPR CT+CRECIR E V L R + HF+F++ES
Sbjct: 304 VNVFDIEDI-GKGKR---RAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIES 359
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G PP LF +A+ +L KC+ V+ L
Sbjct: 360 TGALPPEVLFTEAVKILEDKCERVITEL 387
[12][TOP]
>UniRef100_A9T5P0 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9T5P0_PHYPA
Length = 360
Score = 146 bits (368), Expect = 8e-34
Identities = 74/147 (50%), Positives = 95/147 (64%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ I++E HAI+G G +HAKWSPVATA YRMLPEV L + A LV CP
Sbjct: 218 VAKLRPGQAIELEGHAIKGSGNIHAKWSPVATARYRMLPEVNLMEDIQGKLAEELVQKCP 277
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
VFD+EDV G VARPR CT+CREC+R + V LTR ++HF+F++ES+
Sbjct: 278 TGVFDIEDV-----GTVKKAIVARPRNCTLCRECVRGTDWDKRVQLTRVKDHFIFTIEST 332
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P LF +A+ +L KC ++ L
Sbjct: 333 GALRPEVLFTEAIKILNEKCHRIITEL 359
[13][TOP]
>UniRef100_B9GFY9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9GFY9_POPTR
Length = 390
Score = 144 bits (363), Expect = 3e-33
Identities = 74/148 (50%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKL PGQEI++EAHA++G+G+ HAKWSPV TA+YRM PEV L + +A L+ CP
Sbjct: 246 LAKLGPGQEIELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCP 305
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR-LPELAGAVDLTRRREHFVFSVES 358
+ VFD+ED G VA RACT+CRECIR E V L R ++HF+F++ES
Sbjct: 306 SGVFDIEDT----GNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIES 361
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G PP LF +A+ +L AKC+ V+ L
Sbjct: 362 TGALPPEVLFTEAVKILEAKCERVITEL 389
[14][TOP]
>UniRef100_Q54SN4 DNA-directed RNA polymerases I and III subunit rpac1 n=1
Tax=Dictyostelium discoideum RepID=RPAC1_DICDI
Length = 345
Score = 130 bits (326), Expect = 6e-29
Identities = 62/147 (42%), Positives = 95/147 (64%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ KLRPGQ IDI+ + + +GR H KWSPV TA YR+ P +++ + + +A+ L+ CP
Sbjct: 202 IMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCP 261
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
VFD+ED +G+ V ARP CTMCRECIR PE V + R R+HF+FS+ES+
Sbjct: 262 KKVFDIED-SGQ-------VVAARPLDCTMCRECIRDPEFEQNVKIERVRDHFIFSIEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G ++F++A+ + + KC +V +++
Sbjct: 314 GALKSREIFQEAIKIFIEKCNIVEESI 340
[15][TOP]
>UniRef100_Q10MU3 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed n=1 Tax=Oryza sativa Japonica Group
RepID=Q10MU3_ORYSJ
Length = 352
Score = 125 bits (315), Expect = 1e-27
Identities = 59/98 (60%), Positives = 76/98 (77%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+L PGQ I++E HA++G+G+VHAKWSPVATA+YRMLPEV LR + A+A LVA CP
Sbjct: 230 IARLGPGQAIELEVHAVKGIGKVHAKWSPVATAWYRMLPEVVLREEIKDADAEMLVAKCP 289
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP 295
NVFD+ED+ G G+ V VARPRACT+CR+C+ P
Sbjct: 290 VNVFDIEDL---GNGEKRAV-VARPRACTLCRQCVMGP 323
[16][TOP]
>UniRef100_C5L9Q7 DNA-directed RNA polymerase I, putative n=1 Tax=Perkinsus marinus
ATCC 50983 RepID=C5L9Q7_9ALVE
Length = 310
Score = 124 bits (310), Expect = 4e-27
Identities = 62/148 (41%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ KLR GQE++I+ +G+G++HAKWSPV TA YR++P++ L+ P+ AEA + CP
Sbjct: 146 ITKLRCGQELEIKCFCCKGIGKIHAKWSPVCTATYRLMPDIILKEPIEGAEAKKFKSVCP 205
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE-LAGAVDLTRRREHFVFSVES 358
VFD+ED A V PRACT CR+CI A V L + ++HF+F+VES
Sbjct: 206 MGVFDIEDGA---------AVVKNPRACTTCRQCIEPGNGFADKVSLGKLKDHFIFTVES 256
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F A V+ KC++V +L
Sbjct: 257 VGQIPAPQIFAQAAVVMQNKCRLVKKSL 284
[17][TOP]
>UniRef100_B7Q825 Transferase, putative n=1 Tax=Ixodes scapularis RepID=B7Q825_IXOSC
Length = 344
Score = 123 bits (309), Expect = 6e-27
Identities = 69/148 (46%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEID++ H ++G G+ HAK+SPVATA YR+LPE+ L R + +A L
Sbjct: 195 LAKLRPGQEIDLKLHCMKGTGQDHAKFSPVATASYRLLPEIVLLREVRDEQAERLQGCFA 254
Query: 182 ANVFDLEDVAGRGGGDGFGVS-VARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
V +L++ DG V+ VA RA T R + +L AV+LTR ++HF+FSVES
Sbjct: 255 KGVIELDET-----DDGHKVARVANARADTCSRNVFQYDDLKDAVELTRVKDHFIFSVES 309
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G PP L +A+ VL+AKCQ L L
Sbjct: 310 TGAYPPDLLVTEAIKVLMAKCQAFLSEL 337
[18][TOP]
>UniRef100_Q32L22 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Bos
taurus RepID=RPAC1_BOVIN
Length = 346
Score = 123 bits (309), Expect = 6e-27
Identities = 66/147 (44%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++++ G+ VA PR T RE R +L V L R R+HF+FSVES+
Sbjct: 259 PGVIEVQEIQGKK-----VARVANPRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KCQ LD L
Sbjct: 314 GVLPPDVLVSEAIKVLMGKCQRFLDEL 340
[19][TOP]
>UniRef100_C5LDA1 DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LDA1_9ALVE
Length = 365
Score = 123 bits (308), Expect = 7e-27
Identities = 62/148 (41%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ KLR GQE++I+ +G+G++HAKWSPV TA YR++P++ L+ P+ AEA CP
Sbjct: 201 ITKLRCGQELEIKCFCCKGIGKIHAKWSPVCTATYRLMPDIILKEPIEGAEAKKFKLVCP 260
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE-LAGAVDLTRRREHFVFSVES 358
VFD+ED A V PRACT CR+CI A V L + ++HF+F+VES
Sbjct: 261 MGVFDIEDGA---------AVVKNPRACTTCRQCIEPGNGFADKVSLGKLKDHFIFTVES 311
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F A V+ KC++V +L
Sbjct: 312 VGQIPAPQIFAQAAVVMQNKCRLVKKSL 339
[20][TOP]
>UniRef100_UPI00016E11AA UPI00016E11AA related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AA
Length = 351
Score = 122 bits (307), Expect = 9e-27
Identities = 67/147 (45%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQE+DI H I+G+G+ HAK+SPVATA YR+LPE+TL P+ +A L
Sbjct: 204 IAQLRPGQELDIIMHCIKGIGKDHAKFSPVATASYRLLPEITLLEPVEGEKAERLQRCFF 263
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V DLED G+ VA R T RE +R +L V L R R+HF+F+VE++
Sbjct: 264 RGVIDLEDSNGKK-----VAKVANSRLDTCSREVLRHDDLKNVVKLGRHRDHFIFTVETT 318
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ VL+ KCQ L+ L
Sbjct: 319 GILPPDVLVTEAIKVLMTKCQRFLNEL 345
[21][TOP]
>UniRef100_O08521 Homologous to 40kD subunit of RNA-polymerase I and III (Fragment)
n=1 Tax=Cricetulus griseus RepID=O08521_CRIGR
Length = 347
Score = 122 bits (307), Expect = 9e-27
Identities = 70/148 (47%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEID+EAHAI G+G+ HAK+SPVATA YR+LP + + P+ +A P
Sbjct: 199 VAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFP 258
Query: 182 ANVFDLEDVAGRGGGDG-FGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
V +LE+ G DG VA R T+ REC+R PE A V L R R+H++FSVES
Sbjct: 259 KGVIELEE-----GPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVES 313
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G+ P LF ++ VL +KC V +L
Sbjct: 314 TGIMKPDVLFIKSIAVLKSKCLAVKSSL 341
[22][TOP]
>UniRef100_O94616 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces pombe RepID=RPAC1_SCHPO
Length = 348
Score = 122 bits (307), Expect = 9e-27
Identities = 70/148 (47%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEID+EAHAI G+G+ HAK+SPVATA YR+LP + + P+ +A P
Sbjct: 200 VAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFP 259
Query: 182 ANVFDLEDVAGRGGGDG-FGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
V +LE+ G DG VA R T+ REC+R PE A V L R R+H++FSVES
Sbjct: 260 KGVIELEE-----GPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVES 314
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G+ P LF ++ VL +KC V +L
Sbjct: 315 TGIMKPDVLFIKSIAVLKSKCLAVKSSL 342
[23][TOP]
>UniRef100_B6JXY4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Schizosaccharomyces japonicus yFS275
RepID=B6JXY4_SCHJY
Length = 349
Score = 122 bits (305), Expect = 2e-26
Identities = 66/143 (46%), Positives = 90/143 (62%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEID+EAHAI G+G+ HAK+SPV+TA YR+LP + + P+ +A P
Sbjct: 200 VAKLRPGQEIDLEAHAILGIGQDHAKFSPVSTASYRLLPAIHILEPIEGEDAIKFQKCFP 259
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
A V +LED G VA R T+ REC+R PE A V L R R++F++S+ES+
Sbjct: 260 AGVIELED----GPNGKPRARVADVRKDTVSRECLRHPEFADKVQLGRVRDYFLYSIEST 315
Query: 362 GVRPPVDLFRDALDVLVAKCQVV 430
G+ P LF ++ VL +KC V
Sbjct: 316 GIIKPDQLFLKSIAVLKSKCMAV 338
[24][TOP]
>UniRef100_UPI0000F2C148 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Monodelphis domestica RepID=UPI0000F2C148
Length = 346
Score = 121 bits (304), Expect = 2e-26
Identities = 64/147 (43%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQE+D+ H ++G+G+ HAK+SPVATA YR+LP++TL +P+ A L
Sbjct: 199 IAQLRPGQELDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEGEAAEELSQCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++DV G+ +VA PR T RE R L V L R R+H++FSVES+
Sbjct: 259 PGVIQVQDVKGKK-----VATVANPRLDTFSREIFRHENLKKLVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ +D L
Sbjct: 314 GVLPPEVLVSEAIKVLMGKCRRFMDEL 340
[25][TOP]
>UniRef100_Q6DRM8 RNA polymerase I 140 kDa subunit n=1 Tax=Danio rerio
RepID=Q6DRM8_DANRE
Length = 343
Score = 121 bits (304), Expect = 2e-26
Identities = 66/147 (44%), Positives = 92/147 (62%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LA++RPGQE+DI H ++G+G+ HAK+SPVATA YR+LPE+TL + + +A L
Sbjct: 196 LAQVRPGQELDIVMHCVKGIGKNHAKFSPVATASYRLLPEITLLQTIEGEQAERLKRCFS 255
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +LE+V GR V R T RE +R +L V L R R+HF+FSVES+
Sbjct: 256 PGVIELENVNGRK-----VAKVVNSRLDTCSREVLRHDDLKSLVKLGRVRDHFIFSVEST 310
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A++VL++KCQ L L
Sbjct: 311 GILPPDVLVTEAINVLMSKCQKFLTEL 337
[26][TOP]
>UniRef100_A2ATX1 Polymerase (RNA) I polypeptide C n=2 Tax=Danio rerio
RepID=A2ATX1_DANRE
Length = 362
Score = 121 bits (304), Expect = 2e-26
Identities = 66/147 (44%), Positives = 92/147 (62%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LA++RPGQE+DI H ++G+G+ HAK+SPVATA YR+LPE+TL + + +A L
Sbjct: 215 LAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIEGEQAERLKRCFS 274
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +LE+V GR V R T RE +R +L V L R R+HF+FSVES+
Sbjct: 275 PGVIELENVNGRK-----VAKVVNSRLDTCSREVLRHDDLKSLVKLGRVRDHFIFSVEST 329
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A++VL++KCQ L L
Sbjct: 330 GILPPDVLVTEAINVLMSKCQKFLTEL 356
[27][TOP]
>UniRef100_UPI0000D9AD00 PREDICTED: RNA polymerase I subunit n=1 Tax=Macaca mulatta
RepID=UPI0000D9AD00
Length = 291
Score = 121 bits (303), Expect = 3e-26
Identities = 65/147 (44%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 144 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 203
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V G+ VA PR T RE R +L V L R R+H++FSVES+
Sbjct: 204 PGVIEVQEVQGKK-----VARVANPRLDTFSREIFRHEKLKKVVRLARVRDHYIFSVEST 258
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 259 GVLPPDVLVSEAIKVLMGKCRRFLDEL 285
[28][TOP]
>UniRef100_UPI00016E11AB UPI00016E11AB related cluster n=1 Tax=Takifugu rubripes
RepID=UPI00016E11AB
Length = 347
Score = 121 bits (303), Expect = 3e-26
Identities = 67/147 (45%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQE+DI H I+G+G+ HAK+SPVATA YR+LPE+TL P+ +A L
Sbjct: 200 IAQLRPGQELDIIMHCIKGIGKDHAKFSPVATASYRLLPEITLLEPVEGEKAERLQRCFF 259
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V DLED G VA R T RE +R +L V L R R+HF+F+VE++
Sbjct: 260 RGVIDLEDSNAPGKK---VAKVANSRLDTCSREVLRHDDLKNVVKLGRHRDHFIFTVETT 316
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ VL+ KCQ L+ L
Sbjct: 317 GILPPDVLVTEAIKVLMTKCQRFLNEL 343
[29][TOP]
>UniRef100_UPI00004A557E PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 1 n=1 Tax=Canis
lupus familiaris RepID=UPI00004A557E
Length = 346
Score = 121 bits (303), Expect = 3e-26
Identities = 65/147 (44%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V G+ VA PR T RE R +L V L R R+H++FSVES+
Sbjct: 259 PGVIEVQEVQGKK-----VARVANPRLDTFSREVFRKEKLKKVVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKVLMGKCRRFLDEL 340
[30][TOP]
>UniRef100_O15160 DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Homo
sapiens RepID=RPAC1_HUMAN
Length = 346
Score = 121 bits (303), Expect = 3e-26
Identities = 65/147 (44%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V G+ VA PR T RE R +L V L R R+H++FSVES+
Sbjct: 259 PGVIEVQEVQGKK-----VARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKVLMGKCRRFLDEL 340
[31][TOP]
>UniRef100_UPI000155FEE2 PREDICTED: similar to DNA-directed RNA polymerases I and III
subunit RPAC1 (RNA polymerases I and III subunit AC1)
(DNA-directed RNA polymerase I subunit C) (DNA-directed
RNA polymerases I and III 40 kDa polypeptide) (RPA40)
(RPA39) (RPC40) (AC40) n=1 Tax=Equus caballus
RepID=UPI000155FEE2
Length = 346
Score = 120 bits (302), Expect = 4e-26
Identities = 65/147 (44%), Positives = 91/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V G+ VA PR T RE R +L V L R R+H++FSVES+
Sbjct: 259 PGVIEVQEVQGKK-----VARVANPRLDTFSREVFRHEKLKKVVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKVLMGKCRRFLDEL 340
[32][TOP]
>UniRef100_B6KLD3 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=2
Tax=Toxoplasma gondii RepID=B6KLD3_TOXGO
Length = 346
Score = 120 bits (301), Expect = 5e-26
Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 2/141 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ KLRPGQEI+++A+ +GVG+ HAKWSPV TA YR+ PE+ + + +AS L + CP
Sbjct: 201 ITKLRPGQEIELKAYLEKGVGKTHAKWSPVCTAVYRLEPEIVFKESIQGEDASDLCSLCP 260
Query: 182 ANVFDLEDVAGRGGGDGFGVSVAR-PRACTMCRECI-RLPELAGAVDLTRRREHFVFSVE 355
VFD+ED G + AR PR CT CR CI R P+ ++L + ++HF+FS+E
Sbjct: 261 MGVFDIEDTTGE--------AYARYPRNCTTCRACIERFPK---EIELRKIKDHFIFSIE 309
Query: 356 SSGVRPPVDLFRDALDVLVAK 418
S+G P LF+ A+++L K
Sbjct: 310 STGSVPAPLLFKMAIEILKEK 330
[33][TOP]
>UniRef100_A1L3C2 Polr1c protein n=2 Tax=Mus musculus RepID=A1L3C2_MOUSE
Length = 347
Score = 119 bits (299), Expect = 8e-26
Identities = 65/147 (44%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP +TL P+ A L
Sbjct: 200 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFS 259
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++E+V G+ VA R T RE R +L AV L R R+H++FSVES+
Sbjct: 260 PGVIEVEEVQGKK-----VARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVEST 314
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ +L+ KC+ LD L
Sbjct: 315 GVLPPDVLVSEAIKILMGKCRRFLDEL 341
[34][TOP]
>UniRef100_P52432 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Mus
musculus RepID=RPAC1_MOUSE
Length = 346
Score = 119 bits (299), Expect = 8e-26
Identities = 65/147 (44%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP +TL P+ A L
Sbjct: 199 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++E+V G+ VA R T RE R +L AV L R R+H++FSVES+
Sbjct: 259 PGVIEVEEVQGKK-----VARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ +L+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKILMGKCRRFLDEL 340
[35][TOP]
>UniRef100_Q014V0 RNA polymerase subunit (ISS) n=1 Tax=Ostreococcus tauri
RepID=Q014V0_OSTTA
Length = 382
Score = 119 bits (298), Expect = 1e-25
Identities = 62/154 (40%), Positives = 91/154 (59%), Gaps = 7/154 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL PGQEI++E H ++G+G+ H+KWSPV T +YRM+PE+T+ P+ A+A + C
Sbjct: 232 LVKLAPGQEIELECHCVKGIGQEHSKWSPVGTCWYRMVPEITILEPITGADADVFMERC- 290
Query: 182 ANVFDLED-VAGRGGGDGFGVSVARPRACTMCRECIRLPELAG------AVDLTRRREHF 340
AN D A G GD V V R C +C E +R EL G + + + + HF
Sbjct: 291 ANFNDTHACYACEGKGDKKTVKVVETRGCDLCVERVR--ELTGEPGWDEKIAVRKHKNHF 348
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+F++ES G P +F++A+ +L +KCQ VL L
Sbjct: 349 IFTIESVGQMKPGTIFKEAVKILASKCQNVLSTL 382
[36][TOP]
>UniRef100_UPI0001B7A7D1 UPI0001B7A7D1 related cluster n=1 Tax=Rattus norvegicus
RepID=UPI0001B7A7D1
Length = 260
Score = 118 bits (295), Expect = 2e-25
Identities = 64/147 (43%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 113 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSQCFS 172
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++V G+ VA R T RE R +L AV L R R+H++FSVES+
Sbjct: 173 PGVIAVQEVQGKK-----VARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVEST 227
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ +L+ KC+ LD L
Sbjct: 228 GVLPPDVLVSEAIKILMGKCRRFLDEL 254
[37][TOP]
>UniRef100_Q5RJK9 Polymerase (RNA) I polypeptide C n=2 Tax=Rattus norvegicus
RepID=Q5RJK9_RAT
Length = 346
Score = 118 bits (295), Expect = 2e-25
Identities = 64/147 (43%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSQCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++V G+ VA R T RE R +L AV L R R+H++FSVES+
Sbjct: 259 PGVIAVQEVQGKK-----VARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ +L+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKILMGKCRRFLDEL 340
[38][TOP]
>UniRef100_UPI0000E80092 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 1 n=1
Tax=Gallus gallus RepID=UPI0000E80092
Length = 300
Score = 117 bits (292), Expect = 5e-25
Identities = 62/147 (42%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL +P+ A TL
Sbjct: 153 IALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFS 212
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++++ G+ VA R T RE R L V L R R H++FSVES+
Sbjct: 213 PGVIEIQNIKGKK-----VARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVEST 267
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ +L+ KCQ L+ L
Sbjct: 268 GILPPDVLVTEAIKILMGKCQRFLNEL 294
[39][TOP]
>UniRef100_UPI00003ACD10 PREDICTED: similar to RNA polymerase I subunit hRPA39 isoform 2 n=1
Tax=Gallus gallus RepID=UPI00003ACD10
Length = 346
Score = 117 bits (292), Expect = 5e-25
Identities = 62/147 (42%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL +P+ A TL
Sbjct: 199 IALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++++ G+ VA R T RE R L V L R R H++FSVES+
Sbjct: 259 PGVIEIQNIKGKK-----VARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ +L+ KCQ L+ L
Sbjct: 314 GILPPDVLVTEAIKILMGKCQRFLNEL 340
[40][TOP]
>UniRef100_UPI000194C203 PREDICTED: polymerase (RNA) I polypeptide C, 30kDa n=1
Tax=Taeniopygia guttata RepID=UPI000194C203
Length = 346
Score = 116 bits (291), Expect = 7e-25
Identities = 62/147 (42%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL +P+ A TL
Sbjct: 199 IALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPVEDEAAETLQKCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++++ G+ VA R T RE R L V L R R H++FSVES+
Sbjct: 259 PGVIEIQNINGKK-----VARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ +L+ KCQ L+ L
Sbjct: 314 GILPPDVLVSEAIKILMGKCQRFLNEL 340
[41][TOP]
>UniRef100_B5X7Z3 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Salmo
salar RepID=B5X7Z3_SALSA
Length = 353
Score = 116 bits (291), Expect = 7e-25
Identities = 64/147 (43%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LA+LRPGQE+DI H ++G+G+ HAK+SPVATA YR+LPE+TL + +A L
Sbjct: 206 LAQLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMETVEGEKAERLKRCFS 265
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++E+ G+ V R T RE +R +L AV L R R+HF+FSVES+
Sbjct: 266 PGVIEVENHGGK-----VVAKVVNSRLDTCSREVLRHDDLKNAVKLARVRDHFIFSVEST 320
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ P L +A+ VL+ KCQ L+ L
Sbjct: 321 GILAPDVLVTEAIKVLMTKCQRFLNEL 347
[42][TOP]
>UniRef100_B8CCH8 Dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8CCH8_THAPS
Length = 351
Score = 116 bits (291), Expect = 7e-25
Identities = 62/140 (44%), Positives = 84/140 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ I++EAHA +GVG+ HAK+SPVATA YR++P + + +P+ A LV
Sbjct: 212 LAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPHIEIVKPIYDELAEELVNWFE 271
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
VF L GG ++ P ACTM R +R P L ++ ++R HF+FSVES
Sbjct: 272 PGVFKLVPADDEDGGHKVKAELSNPYACTMSRNYMRNPTLKESIKMSRVPNHFIFSVESV 331
Query: 362 GVRPPVDLFRDALDVLVAKC 421
G+ P + +AL VL KC
Sbjct: 332 GMMEPAVIVSEALKVLKEKC 351
[43][TOP]
>UniRef100_UPI00017F0A34 PREDICTED: RNA polymerase I subunit hRPA39 n=1 Tax=Sus scrofa
RepID=UPI00017F0A34
Length = 346
Score = 116 bits (290), Expect = 9e-25
Identities = 63/147 (42%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++++ G+ VA PR T RE R L V L R R+H++FSVES+
Sbjct: 259 PGVIEVQEIQGKK-----VARVANPRLDTFSREVFRNDMLKKVVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKVLMGKCRRFLDEL 340
[44][TOP]
>UniRef100_A4S0F8 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901
RepID=A4S0F8_OSTLU
Length = 360
Score = 116 bits (290), Expect = 9e-25
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL PGQE+++E H ++G+G+ HAKWSPV T +Y+M+PE+T+ P+ A+A + C
Sbjct: 210 LVKLAPGQEVELECHCVKGIGQEHAKWSPVGTCWYKMVPEITILEPITGADADEFMKKCA 269
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR----LPELAGAVDLTRRREHFVFS 349
+ A G GD V V R C C E +R P A + + +R++HF+F+
Sbjct: 270 NFSETHKCYACEGKGDKKTVKVVESRGCDFCVERVRELTGEPGWADKIAVRKRKDHFIFT 329
Query: 350 VESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+E+ G P +F++A+ +L +K Q VL L
Sbjct: 330 IETIGQMAPGTIFKEAVKILASKAQNVLSTL 360
[45][TOP]
>UniRef100_A2ER03 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2ER03_TRIVA
Length = 341
Score = 116 bits (290), Expect = 9e-25
Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 6/153 (3%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEAST--LVAA 175
+ K+ PGQ I + AI+G+G HAK+ PV TAFYR++P + ++ + S+E L++
Sbjct: 196 ITKILPGQTIHLYCRAIKGIGSDHAKFQPVCTAFYRLVPSIQVKDEINSSEKKQQKLISK 255
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP VFD+ED + V PR CT CRECIR P LA V L + H+ F+VE
Sbjct: 256 CPMGVFDIEDSK---------LVVRSPRKCTTCRECIRNPSLAHYVSLGKEANHYEFTVE 306
Query: 356 SSGVRPPVDLFRDALDVLVAKC----QVVLDAL 442
S GVRP L ++AL +L +C +V+ D L
Sbjct: 307 SVGVRPAYVLVKEALQILQNRCDEFTEVITDYL 339
[46][TOP]
>UniRef100_UPI00005A26F7 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 5 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F7
Length = 338
Score = 114 bits (285), Expect = 3e-24
Identities = 63/147 (42%), Positives = 86/147 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ VA PR T RE R +L V L R R+H++FSVES+
Sbjct: 259 PGVIEV-------------ARVANPRLDTFSREVFRKEKLKKVVRLARVRDHYIFSVEST 305
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 306 GVLPPDVLVSEAIKVLMGKCRRFLDEL 332
[47][TOP]
>UniRef100_B6AC64 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AC64_9CRYT
Length = 351
Score = 114 bits (284), Expect = 4e-24
Identities = 57/148 (38%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRP-LASAEASTLVAAC 178
+ KLRPGQ I+ + +G+G+ HAKWSPV+TA YR+LPE + +A V C
Sbjct: 208 ITKLRPGQVIEAILYCEKGIGKTHAKWSPVSTATYRLLPEFKFPEGYITGKDAKEFVEVC 267
Query: 179 PANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
P NVFD+ED+ G+ V V PR CT CR CI + V++ + + HF+FS+ES
Sbjct: 268 PMNVFDIEDITGK-------VYVKNPRNCTTCRACIE--KFPKKVEIFKNKHHFIFSIES 318
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G P+ L + A+++L K + +++
Sbjct: 319 TGSISPIQLVKTAINILREKSHKINNSI 346
[48][TOP]
>UniRef100_UPI0000EDC949 PREDICTED: similar to RNA polymerase I subunit hRPA39 n=1
Tax=Ornithorhynchus anatinus RepID=UPI0000EDC949
Length = 346
Score = 113 bits (283), Expect = 6e-24
Identities = 61/147 (41%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ +LRPGQE+D+ H ++GVG+ HAK+SPV T YR+LP++TL +P+ A L
Sbjct: 199 ITQLRPGQELDLLMHYVKGVGKDHAKFSPVDTVSYRLLPDITLLQPVEGEMAEKLKDCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++ G+ VA PR T RE R EL V L R R+H++FSVES+
Sbjct: 259 PGVIQIQEIKGKK-----VAVVANPRLETFSREVFRHDELKKLVRLARVRDHYIFSVEST 313
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ +L+ KC+ LD L
Sbjct: 314 GVLPPDVLVSEAIKILMGKCRRFLDEL 340
[49][TOP]
>UniRef100_C5FSZ3 DNA-directed RNA polymerase I and III subunit RPAC1 n=1
Tax=Microsporum canis CBS 113480 RepID=C5FSZ3_NANOT
Length = 380
Score = 113 bits (282), Expect = 7e-24
Identities = 64/151 (42%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H I+G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 213 LAKLRPGQKIDIEMHCIKGIGADHAKYSPVATASYRLLPDIQILRPILGKDAIKFAGCFP 272
Query: 182 ANVFDLEDV-AGRGGGDGFGVS---------VARPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V A G G V P T+ REC+R E G V L R R
Sbjct: 273 RGVIGIEHVTAAESAQPGSGYEGKEGEKKAVVVDPFKDTVSRECLRHDEFKGKVKLGRVR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F++ES+G +F +++ VL KCQ
Sbjct: 333 DHFIFNIESTGQFNSDLMFLESIKVLKLKCQ 363
[50][TOP]
>UniRef100_C1BKA8 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Osmerus
mordax RepID=C1BKA8_OSMMO
Length = 351
Score = 112 bits (281), Expect = 1e-23
Identities = 60/147 (40%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQE+D+ ++G+G+ HAK+SPVATA YR+LPE+TL + +A L +
Sbjct: 204 IAQLRPGQELDVVMSCVKGIGKDHAKFSPVATASYRLLPEITLMETVEGEKAERLKSCFS 263
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +LE+ G+ V R T RE +R +L V L R R+HF+FSVES+
Sbjct: 264 PGVIELENCNGK-----VIAKVVNSRPDTCSREVLRHDDLKNLVKLARVRDHFIFSVEST 318
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP + +A+ VL++KC+ L+ L
Sbjct: 319 GILPPDVVVTEAIKVLMSKCRRFLNEL 345
[51][TOP]
>UniRef100_Q4X0E8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Aspergillus fumigatus RepID=Q4X0E8_ASPFU
Length = 374
Score = 112 bits (281), Expect = 1e-23
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+ID+E H I+G+G HAK+SPVATA YR++P++ + RP+ +A P
Sbjct: 213 IAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGEDAKKFAKCFP 272
Query: 182 ANVFDLEDVAGR----------GGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +LE V R G V P T+ REC+R E G V L R R
Sbjct: 273 KGVIELEPVTSREAAQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRHEEFQGKVKLGRIR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VES+G LF +++ VL KC
Sbjct: 333 DHFIFNVESTGQFESDYLFLESVKVLKLKC 362
[52][TOP]
>UniRef100_C6HA00 DNA-directed RNA polymerase I and III n=1 Tax=Ajellomyces
capsulatus H143 RepID=C6HA00_AJECH
Length = 380
Score = 112 bits (281), Expect = 1e-23
Identities = 64/151 (42%), Positives = 88/151 (58%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H ++G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALKFARCFP 273
Query: 182 ANVFDLEDVAGRGG---GDGF-------GVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V ++ V+ G G+ V V P TM REC+R E G V L R R
Sbjct: 274 KGVIGIDSVSAEEASRPGSGYEGHEGEKKVVVVDPFKDTMSRECLRHDEFQGKVKLGRIR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 334 DHFIFNVESTGQFRSDVLFIESVKVLKLKCR 364
[53][TOP]
>UniRef100_B0XTN4 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Aspergillus fumigatus A1163 RepID=B0XTN4_ASPFC
Length = 414
Score = 112 bits (281), Expect = 1e-23
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+ID+E H I+G+G HAK+SPVATA YR++P++ + RP+ +A P
Sbjct: 253 IAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGEDAKKFAKCFP 312
Query: 182 ANVFDLEDVAGR----------GGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +LE V R G V P T+ REC+R E G V L R R
Sbjct: 313 KGVIELEPVTSREAAQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRHEEFQGKVKLGRIR 372
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VES+G LF +++ VL KC
Sbjct: 373 DHFIFNVESTGQFESDYLFLESVKVLKLKC 402
[54][TOP]
>UniRef100_B5Y3D1 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP
1055/1 RepID=B5Y3D1_PHATR
Length = 319
Score = 112 bits (280), Expect = 1e-23
Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ I++E H GVG+ HAK+SPVATA YR++P + L R + A LV
Sbjct: 162 IAKLRPGQSIELEVHGRVGVGKDHAKFSPVATASYRLMPHIELLRDVYDEVADELVHVYE 221
Query: 182 ANVFDLEDV-AGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
VF++ A G V P ACTM R +R ELA AV ++R +HF+FSVES
Sbjct: 222 PGVFEIVPTDATDPAGTSRKARVCNPYACTMSRNYMRHTELAQAVRMSRIPDHFIFSVES 281
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLD 436
G+ P L +AL +L KC+ V+D
Sbjct: 282 VGMYAPGVLVAEALRILQRKCRKVMD 307
[55][TOP]
>UniRef100_A1DHS7 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Neosartorya fischeri NRRL 181 RepID=A1DHS7_NEOFI
Length = 374
Score = 112 bits (280), Expect = 1e-23
Identities = 62/150 (41%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+ID+E H I+G+G HAK+SPVATA YR++P++ + RP+ +A P
Sbjct: 213 IAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPDIKILRPIIGEDAKKFAKCFP 272
Query: 182 ANVFDLEDVAGR----------GGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +LE V R G V P T+ REC+R E G V L R R
Sbjct: 273 KGVVELEPVTSREAAQKGSEYEGRAGEMKAVVRDPFKDTVSRECLRHEEFQGKVKLGRIR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VES+G LF +++ VL KC
Sbjct: 333 DHFIFNVESTGQFESDYLFLESVKVLKLKC 362
[56][TOP]
>UniRef100_C1H4P1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb01
RepID=C1H4P1_PARBA
Length = 380
Score = 112 bits (279), Expect = 2e-23
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H ++G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGMDAVKFAGCFP 273
Query: 182 ANVFDLEDV---------AGRGGGDGFGVSVA-RPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V +G G +G +V P T+ REC+R E G V L R R
Sbjct: 274 EGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRHEEFQGKVKLGRIR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 334 DHFIFNVESTGQFRSDVLFLESVKVLKLKCR 364
[57][TOP]
>UniRef100_C1GK69 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb18
RepID=C1GK69_PARBD
Length = 380
Score = 112 bits (279), Expect = 2e-23
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H ++G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGMDAVKFAGCFP 273
Query: 182 ANVFDLEDV---------AGRGGGDGFGVSVA-RPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V +G G +G +V P T+ REC+R E G V L R R
Sbjct: 274 EGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRHEEFRGKVKLGRIR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 334 DHFIFNVESTGQFRSDVLFLESVKVLKLKCR 364
[58][TOP]
>UniRef100_C0SF50 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Paracoccidioides brasiliensis Pb03
RepID=C0SF50_PARBP
Length = 345
Score = 112 bits (279), Expect = 2e-23
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H ++G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 179 LAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGKDAVKFAGCFP 238
Query: 182 ANVFDLEDV---------AGRGGGDGFGVSVA-RPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V +G G +G +V P T+ REC+R E G V L R R
Sbjct: 239 EGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRHEEFQGKVKLGRIR 298
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 299 DHFIFNVESTGQFRSDVLFLESVKVLKLKCR 329
[59][TOP]
>UniRef100_A6R4R6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Ajellomyces capsulatus NAm1 RepID=A6R4R6_AJECN
Length = 380
Score = 112 bits (279), Expect = 2e-23
Identities = 65/151 (43%), Positives = 87/151 (57%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H ++G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALKFARCFP 273
Query: 182 ANVFDLEDV----AGRGGGDGFG------VSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V ++ V A R G G V P TM REC+R E G V L R R
Sbjct: 274 KGVIGIDSVSAEEASRAGSGYEGHEGEKKAVVVDPFKDTMSRECLRHDEFQGKVKLGRIR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 334 DHFIFNVESTGQFRSDVLFIESVKVLKLKCR 364
[60][TOP]
>UniRef100_B8NHK8 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=2
Tax=Aspergillus RepID=B8NHK8_ASPFN
Length = 373
Score = 111 bits (278), Expect = 2e-23
Identities = 63/150 (42%), Positives = 88/150 (58%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+ID+E H I+G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 212 IAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPDIQILRPILGEDAKKFAKCFP 271
Query: 182 ANVFDLEDV---------AGRGGGDGFGVSVARPR-ACTMCRECIRLPELAGAVDLTRRR 331
V LE V +G G +G +V R T+ REC+R E G V L R R
Sbjct: 272 KGVIGLEPVTREEAAKQGSGYEGHEGETKAVVRDAFKDTVSRECLRHEEFQGKVKLGRVR 331
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F++ES+G LF +++ VL KC
Sbjct: 332 DHFIFNIESTGQFDSDVLFLESVKVLKLKC 361
[61][TOP]
>UniRef100_C5GBG6 DNA-directed RNA polymerase I and III polypeptide n=2
Tax=Ajellomyces dermatitidis RepID=C5GBG6_AJEDR
Length = 380
Score = 111 bits (277), Expect = 3e-23
Identities = 66/151 (43%), Positives = 90/151 (59%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H I+G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIRILRPILGQDALKFARCFP 273
Query: 182 ANVFDLEDV-------AGRG--GGDGFGVSVA-RPRACTMCRECIRLPELAGAVDLTRRR 331
V ++ V AG G G +G +V P T+ REC+R E G V L R R
Sbjct: 274 KGVIGIDSVSAEEASQAGSGYEGHEGEKKAVVLDPFKDTVSRECLRHEEFRGKVKLGRIR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 334 DHFIFNVESTGQFRSDVLFLESVKVLKLKCR 364
[62][TOP]
>UniRef100_C4R920 RNA polymerase subunit, common to RNA polymerase I and III n=1
Tax=Pichia pastoris GS115 RepID=C4R920_PICPG
Length = 335
Score = 111 bits (277), Expect = 3e-23
Identities = 58/142 (40%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI ++AH I G+G HAK+SPV TA YR+LP + + +P+ +A P
Sbjct: 193 IAKLRPGQEISLKAHCILGLGSDHAKFSPVCTASYRLLPVINITQPITGKDAEKFQKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVAR-PRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
V +E+ G +V + R T+ REC+R PE G V L R+R+HF+F+VES
Sbjct: 253 KGVIAIEN----------GQAVVKDARRDTVSRECLRHPEFEGKVKLARQRDHFIFNVES 302
Query: 359 SGVRPPVDLFRDALDVLVAKCQ 424
+G PP ++F ++ +L K +
Sbjct: 303 TGCMPPEEIFFKSVRILKNKAE 324
[63][TOP]
>UniRef100_C0NBQ0 DNA-directed RNA polymerase I and III polypeptide n=1
Tax=Ajellomyces capsulatus G186AR RepID=C0NBQ0_AJECG
Length = 380
Score = 111 bits (277), Expect = 3e-23
Identities = 63/151 (41%), Positives = 87/151 (57%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H ++G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALKFARCFP 273
Query: 182 ANVFDLEDVAGRGG---GDGF-------GVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V ++ V+ G G+ V P TM REC+R E G V L R R
Sbjct: 274 KGVIGIDSVSAEEASRPGSGYEGHEGEKKAVVVDPFKDTMSRECLRHDEFQGKVKLGRIR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+F+VES+G LF +++ VL KC+
Sbjct: 334 DHFIFNVESTGQFRSDVLFIESVKVLKLKCR 364
[64][TOP]
>UniRef100_B2WCA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Pyrenophora tritici-repentis Pt-1C-BFP
RepID=B2WCA1_PYRTR
Length = 376
Score = 111 bits (277), Expect = 3e-23
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 9/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ K+RPGQE++I HAI+G+G+ HAK+SPVATA YR++P + + +P+ A+A P
Sbjct: 216 ICKMRPGQELEIRMHAIKGIGQDHAKFSPVATASYRLMPTIDITKPIVGADAKKFSRCFP 275
Query: 182 ANVFDLEDVAGRG--------GGDGFGVS-VARPRACTMCRECIRLPELAGAVDLTRRRE 334
+ V L+ V G +G + VA P T+ REC+R PE V L R R+
Sbjct: 276 SGVIRLDTVTSADIEKHPELEGKEGEPKAVVANPMNDTVSRECLRHPEFKDKVKLGRIRD 335
Query: 335 HFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
HF+F VES+G +LF +++ +L KCQ
Sbjct: 336 HFIFRVESTGQWESDELFLESVKLLKIKCQ 365
[65][TOP]
>UniRef100_Q6IP84 MGC78824 protein n=1 Tax=Xenopus laevis RepID=Q6IP84_XENLA
Length = 347
Score = 110 bits (276), Expect = 4e-23
Identities = 61/147 (41%), Positives = 87/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEI++ H ++G+G+ HAK+SPVATA YR+LPEVTL + A L
Sbjct: 200 IAQLRPGQEINVIMHCVKGIGKDHAKFSPVATASYRLLPEVTLLSSIEGELADKLQGCFS 259
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++V G+ V R T RE R +L V + R R+H++FSVES+
Sbjct: 260 PGVISVDEVNGKR-----VARVENARMDTCSREIFRHDDLKNLVRMARVRDHYIFSVEST 314
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ VL+ KC+ LD L
Sbjct: 315 GILPPDILVSEAIKVLMGKCRRFLDEL 341
[66][TOP]
>UniRef100_A9V9D0 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V9D0_MONBE
Length = 363
Score = 110 bits (276), Expect = 4e-23
Identities = 63/147 (42%), Positives = 85/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ K+RPGQE++++ +GVG+ HAKWSPVATA YR++PE+ L+ P+ A L
Sbjct: 199 IMKMRPGQEVNMQLFCEKGVGKTHAKWSPVATASYRLMPEIILKEPIVGPLAHKLQKCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V D+ V G D + PRA T+ RE R +L V+L R R+HF+FSVES
Sbjct: 259 PGVCDI--VKNSKGED--EAKIVNPRADTVSREVFRHDDLRDKVELNRVRDHFIFSVESV 314
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P L AL L +KCQ V+D L
Sbjct: 315 GALAPDVLVLMALQELKSKCQRVIDFL 341
[67][TOP]
>UniRef100_Q0UUA6 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum
RepID=Q0UUA6_PHANO
Length = 350
Score = 110 bits (276), Expect = 4e-23
Identities = 59/150 (39%), Positives = 87/150 (58%), Gaps = 9/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ K+RPGQ+I + HAI+G+G+ HAK+SPVATA YR++P + + +P+ A+A P
Sbjct: 190 IVKMRPGQKIQLSMHAIKGIGQDHAKFSPVATASYRLMPTIDILKPIVGADAKKFARCFP 249
Query: 182 ANVFDLEDVAGR--------GGGDGFGVSVA-RPRACTMCRECIRLPELAGAVDLTRRRE 334
V LE V G +G +V P T+ REC+R PE V+L R R+
Sbjct: 250 RGVIKLETVTSEDVEKNTELAGQEGESKAVVDDPMKDTVSRECLRHPEFKDKVNLGRIRD 309
Query: 335 HFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
HF+F VES+G +LF +++ +L KCQ
Sbjct: 310 HFIFRVESTGQWESDELFLESVKLLKVKCQ 339
[68][TOP]
>UniRef100_C5P1D3 DNA-directed RNA polymerase, putative n=1 Tax=Coccidioides
posadasii C735 delta SOWgp RepID=C5P1D3_COCP7
Length = 382
Score = 110 bits (276), Expect = 4e-23
Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H I+G+G+ HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGNDAVNFANCFP 273
Query: 182 ANVFDLEDVAGRG---GGDGF-------GVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V G G+ V P T+ REC+R E G V L R R
Sbjct: 274 KGVIGIEQVTAEDAAQAGSGYEGQEGEKKAVVVDPFKDTVSRECLRHEEFKGKVKLGRVR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F++ES G LF +++ VL KC
Sbjct: 334 DHFIFNIESVGQFNSDLLFLESVKVLKLKC 363
[69][TOP]
>UniRef100_A7ECC0 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum
1980 UF-70 RepID=A7ECC0_SCLS1
Length = 387
Score = 110 bits (276), Expect = 4e-23
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 10/157 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AK+RPGQ IDI+ HAI+G+GR HAK+SPVATA YR+LP + + +P+ +A P
Sbjct: 226 IAKMRPGQVIDIDMHAIKGIGRDHAKFSPVATASYRLLPVINITQPILGKDAEKFKKCFP 285
Query: 182 ANVFDLEDVAGRGG---GDGFGVSVARPRAC-------TMCRECIRLPELAGAVDLTRRR 331
V +E V + G G+ +A T+ REC+R E G V L R R
Sbjct: 286 PGVIGIEKVTAKEAKIKGSGYEGHEGEKKAVVVDAMRDTVSRECLRHEEFQGKVKLGRVR 345
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+HF+FS+ES G +LF +++ L KC+ +L
Sbjct: 346 DHFIFSIESLGQWDSDELFLESIKTLRTKCEAFKTSL 382
[70][TOP]
>UniRef100_Q1DYH9 Putative uncharacterized protein n=1 Tax=Coccidioides immitis
RepID=Q1DYH9_COCIM
Length = 382
Score = 110 bits (275), Expect = 5e-23
Identities = 63/150 (42%), Positives = 85/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H I+G+G+ HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 214 LAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGNDAVKFANCFP 273
Query: 182 ANVFDLEDVAGRG---GGDGF-------GVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V G G+ V P T+ REC+R E G V L R R
Sbjct: 274 KGVIGIEQVTAEDAAQAGSGYEGQEGQKKAVVVDPFKDTVSRECLRHEEFKGKVKLGRVR 333
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F++ES G LF +++ VL KC
Sbjct: 334 DHFIFNIESVGQFNSDLLFLESVKVLKLKC 363
[71][TOP]
>UniRef100_Q5CPY6 RNA polymerase III C5 subunit n=1 Tax=Cryptosporidium parvum Iowa
II RepID=Q5CPY6_CRYPV
Length = 344
Score = 110 bits (274), Expect = 6e-23
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-RRPLASAEASTL-VAA 175
+ KLRPGQ I+ + + +GRVHAKWSPV TA YR+LPE P++ ++A L
Sbjct: 199 ITKLRPGQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTV 258
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP VFD+EDV G PR CT CR CI + + L + + HF+FS+E
Sbjct: 259 CPMKVFDIEDVTG-------NAVPTNPRNCTTCRACIE--KFPNKIKLLKDKFHFIFSIE 309
Query: 356 SSGVRPPVDLFRDALDVLVAK 418
++G PPV+L + A+D+L K
Sbjct: 310 TTGCIPPVELVKTAIDILRKK 330
[72][TOP]
>UniRef100_Q5CJZ9 DNA-directed RNA polymerase I n=1 Tax=Cryptosporidium hominis
RepID=Q5CJZ9_CRYHO
Length = 344
Score = 110 bits (274), Expect = 6e-23
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 2/141 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-RRPLASAEASTL-VAA 175
+ KLRPGQ I+ + + +GRVHAKWSPV TA YR+LPE P++ ++A L
Sbjct: 199 ITKLRPGQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTV 258
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP VFD+EDV G PR CT CR CI + + L + + HF+FS+E
Sbjct: 259 CPMKVFDIEDVTG-------NAVPTNPRNCTTCRACIE--KFPNKIKLLKDKFHFIFSIE 309
Query: 356 SSGVRPPVDLFRDALDVLVAK 418
++G PPV+L + A+D+L K
Sbjct: 310 TTGCIPPVELVKTAIDILRKK 330
[73][TOP]
>UniRef100_A6RP60 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana
B05.10 RepID=A6RP60_BOTFB
Length = 389
Score = 110 bits (274), Expect = 6e-23
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 10/157 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AK+RPGQ IDI+ HAI+G+GR HAK+SPVATA YR+LP + + +P+ +A P
Sbjct: 228 IAKMRPGQVIDIDMHAIKGIGRDHAKFSPVATASYRLLPVIDITQPILGKDAKKFKRCFP 287
Query: 182 ANVFDLEDVAGRGG---GDGFGVSVARPRAC-------TMCRECIRLPELAGAVDLTRRR 331
V +E V + G G+ +A T+ REC+R E G V L R R
Sbjct: 288 DGVIGIEKVTAKEAKIKGSGYEGHEGEDKAVVVDAMRDTVSRECLRHEEFQGKVKLGRVR 347
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+HF+FS+ES G +LF +++ L KC+ +L
Sbjct: 348 DHFIFSIESLGQWDSDELFLESIKTLRTKCEAFKTSL 384
[74][TOP]
>UniRef100_A1C7I5 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Aspergillus clavatus RepID=A1C7I5_ASPCL
Length = 374
Score = 110 bits (274), Expect = 6e-23
Identities = 63/150 (42%), Positives = 88/150 (58%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+ID+E H I+G+G HAK+SPVATA YR++P++ + RP+ +A P
Sbjct: 213 VAKLRPGQKIDMELHCIKGIGADHAKFSPVATASYRLMPDIKILRPIIGDDAKKFAKCFP 272
Query: 182 ANVFDLEDV----AGRGGGDGFG------VSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +LE V A + G + G V P T+ REC+R E G V L R R
Sbjct: 273 KGVIELEPVTSTEAAQKGSEYEGHAGELKAVVRDPFNDTVSRECLRHEEFQGKVKLGRIR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VES+G LF +++ VL KC
Sbjct: 333 DHFIFNVESTGQFESDYLFLESVKVLKLKC 362
[75][TOP]
>UniRef100_C1MRA1 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MRA1_9CHLO
Length = 410
Score = 109 bits (273), Expect = 8e-23
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-RRPLASAEASTLVAAC 178
L K+ GQEI++EAH +G G+ HAKWSPV T +YRM+P+VT PL +A + C
Sbjct: 261 LVKMVAGQEIELEAHCTKGDGKEHAKWSPVGTTWYRMVPQVTFPSGPLTGEDADVFMREC 320
Query: 179 PANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRL----PELAGAVDLTRRREHFVF 346
A+ D R G D V R C C E +R P V L ++++HF+F
Sbjct: 321 -ADFDDAHACYERVGSDR-RVVAKNERGCEFCVERVRALSGEPGWEEKVQLLKKKDHFIF 378
Query: 347 SVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+VES+G PP +F++A++VL +KCQ VL AL
Sbjct: 379 TVESTGQMPPELIFKEAVNVLASKCQSVLSAL 410
[76][TOP]
>UniRef100_B6Q738 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Penicillium marneffei ATCC 18224 RepID=B6Q738_PENMQ
Length = 373
Score = 109 bits (273), Expect = 8e-23
Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ I++E H I+G+G HAK+SPVATA YR+LPE+ + RP+ +A P
Sbjct: 212 IAKLRPGQVIELEMHCIKGIGADHAKFSPVATATYRLLPEIRIMRPIIGEDARKFAKCFP 271
Query: 182 ANVFDLE-----DVAGRGGG-DGFG----VSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V E + A +G G +G V P T+ REC+R E V L R R
Sbjct: 272 KGVIGFEKITPAEAAQKGSGYEGHAGEDKAVVVDPFKDTVSRECLRHDEFKDKVKLGRVR 331
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VES+G P LF +++ VL KC
Sbjct: 332 DHFIFNVESTGQFPSDTLFLESVKVLKLKC 361
[77][TOP]
>UniRef100_UPI00019261EE PREDICTED: similar to DNA-directed RNA polymerases I and III
subunit RPAC1 n=1 Tax=Hydra magnipapillata
RepID=UPI00019261EE
Length = 354
Score = 109 bits (272), Expect = 1e-22
Identities = 61/147 (41%), Positives = 86/147 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQE+DI H ++G+G+ HAK+SPVATA YR+LPE+TL +P+ A TL
Sbjct: 208 IAKLRPGQELDIRMHCVKGIGKDHAKFSPVATASYRLLPEITLLKPVVGELAETLAKCFS 267
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + + G V PR + RE R L V L + R+HF++SVES+
Sbjct: 268 KGVIKVIEENGI-----TRAVVDNPRKDSGMREIYRNEILKKIVKLEKVRDHFIYSVEST 322
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP L +A+ +L AKC++ + L
Sbjct: 323 GALPPDVLVEEAIKILHAKCRLYIQQL 349
[78][TOP]
>UniRef100_C3Z3J6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae
RepID=C3Z3J6_BRAFL
Length = 290
Score = 109 bits (272), Expect = 1e-22
Identities = 61/147 (41%), Positives = 83/147 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQE+D++ H ++G+GR HAK+SPVATA YR+LPE+ L + A LV
Sbjct: 137 IAKLRPGQEMDLKLHCVKGIGRDHAKFSPVATASYRLLPEIVLTEEVKGERADRLVRCFS 196
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + G V R T RE R P+L V L + R+HF+FSVES+
Sbjct: 197 PGVMEVTEENGVK-----KARVVNSRLDTCSREIFRHPDLKDCVKLNKLRDHFIFSVEST 251
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P L +A VL+ KC+ L L
Sbjct: 252 GALAPDVLVCEATKVLMGKCRKFLSEL 278
[79][TOP]
>UniRef100_A4HA24 DNA-directed RNA polymerase, alpha subunit,putative n=1
Tax=Leishmania braziliensis RepID=A4HA24_LEIBR
Length = 446
Score = 109 bits (272), Expect = 1e-22
Identities = 58/153 (37%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL PGQ I ++A A++G G VHAKW PV+ +Y M V LR L + A LV +CP
Sbjct: 280 LTKLGPGQRIKLKAIAVKGFGAVHAKWCPVSACYYEMKTSVELRERLTGSAAEALVKSCP 339
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGA--------VDLTRRREH 337
A VF ED G G +V P CT+CREC+R + AGA V + + + H
Sbjct: 340 AGVFGYED-----GQKGAAATVLAPEKCTLCRECLRSDDNAGAAAASEGDRVRVQKDKTH 394
Query: 338 FVFSVESSGVRPPVDLFRDALDVLVAKCQVVLD 436
+F +ES G P + R L + +C+ + +
Sbjct: 395 VIFHIESVGQLHPAQILRFGLRLFAERCRALAE 427
[80][TOP]
>UniRef100_A2QD13 Complex: RCP40 of S. cerevisiae associates with RCP19 of S.
cerevisiae n=1 Tax=Aspergillus niger CBS 513.88
RepID=A2QD13_ASPNC
Length = 359
Score = 108 bits (271), Expect = 1e-22
Identities = 59/140 (42%), Positives = 82/140 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ I++E H I+G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 212 VAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPDIKILRPIIGDDAKKFAKCFP 271
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V LE +G V P T+ REC+R E G V L R R+HF+F++ES
Sbjct: 272 SGVIGLE----KGHEGELKAVVVDPFKDTVSRECLRHEEFQGKVKLGRVRDHFIFNIESV 327
Query: 362 GVRPPVDLFRDALDVLVAKC 421
G LF +++ VL KC
Sbjct: 328 GQFESDTLFLESVKVLKLKC 347
[81][TOP]
>UniRef100_UPI000186AA5B hypothetical protein BRAFLDRAFT_133039 n=1 Tax=Branchiostoma
floridae RepID=UPI000186AA5B
Length = 308
Score = 108 bits (270), Expect = 2e-22
Identities = 61/147 (41%), Positives = 83/147 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQE+D++ H ++G+GR HAK+SPVATA YR+LPE+ L + A LV
Sbjct: 155 IAKLRPGQEMDLKLHCVKGIGRDHAKFSPVATASYRLLPEIVLTEEVKGERADRLVRCFS 214
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + G V R T RE R P+L V L + R+HF+FSVES+
Sbjct: 215 PGVMEVIEENGVK-----KARVVNSRLDTCSREIFRHPDLKDCVKLNKLRDHFIFSVEST 269
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P L +A VL+ KC+ L L
Sbjct: 270 GALAPDVLVCEATKVLMGKCRKFLSEL 296
[82][TOP]
>UniRef100_UPI00004DA7E9 DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Xenopus (Silurana) tropicalis
RepID=UPI00004DA7E9
Length = 347
Score = 108 bits (270), Expect = 2e-22
Identities = 60/147 (40%), Positives = 87/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEI + H ++G+G+ HAK+SPVATA YR+LPE+TL P+ A L
Sbjct: 200 IAQLRPGQEISVIMHCVKGIGKDHAKFSPVATASYRLLPEITLLCPIEGELADRLQRCFS 259
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++V G+ V R T RE R +L V + R R++++FSVES+
Sbjct: 260 PGVIGVDEVDGKR-----VARVINARTDTCGREIFRHDDLKDLVRMARVRDYYIFSVEST 314
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ PP L +A+ VL+ KC+ LD L
Sbjct: 315 GILPPDILVSEAIKVLMGKCRRFLDEL 341
[83][TOP]
>UniRef100_UPI0000E468FB PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus
purpuratus RepID=UPI0000E468FB
Length = 335
Score = 108 bits (269), Expect = 2e-22
Identities = 60/141 (42%), Positives = 85/141 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEID++ H ++G+G+ HAK+SPVATA YR++PE+ L + A L
Sbjct: 184 IAKLRPGQEIDLKMHCVKGIGKDHAKFSPVATASYRLMPEIILTEDIVGERAKKLQQCFS 243
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V D+E + G V VA PR T RE +L V L R R+HF+FSVES+
Sbjct: 244 SGVIDVE----KRNGVPVAV-VACPRRDTCGREVFSHDDLKDCVKLNRIRDHFIFSVEST 298
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P L +A+++L +KC+
Sbjct: 299 GALRPEVLVSEAINILKSKCK 319
[84][TOP]
>UniRef100_Q6CQS0 KLLA0D14861p n=1 Tax=Kluyveromyces lactis RepID=Q6CQS0_KLULA
Length = 334
Score = 108 bits (269), Expect = 2e-22
Identities = 58/141 (41%), Positives = 84/141 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + AH I G+G HAK+SPV+TA YR+LP + + +P+ +A V P
Sbjct: 193 LAKLRPGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITGDDAKKFVKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V D+ + G+ + + PR T+ RE +R E G V L R R+HF+F+VESS
Sbjct: 253 KGVADVNE-----KGEAY---IKDPRKDTVSREVLRHDEFQGKVKLGRVRDHFIFNVESS 304
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 305 GAMTPEEIFFKSVRILKNKAE 325
[85][TOP]
>UniRef100_Q0CY78 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Aspergillus terreus NIH2624 RepID=Q0CY78_ASPTN
Length = 374
Score = 108 bits (269), Expect = 2e-22
Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+I +E H I+G+G HAK+SPV TA YR+LP++ + RP+ +A P
Sbjct: 213 IAKLRPGQKISMELHCIKGIGADHAKFSPVCTASYRLLPDIKIERPIIGDDAKKFAKCFP 272
Query: 182 ANVFDLEDV---------AGRGGGDGFGVSVARPR-ACTMCRECIRLPELAGAVDLTRRR 331
V LE V +G G +G +V R T+ REC+R E G V L R R
Sbjct: 273 RGVIGLEPVTREEAAKKGSGYEGHEGEMKAVVRDAFNDTVSRECLRHEEFQGKVKLGRVR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VESSG LF +++ VL KC
Sbjct: 333 DHFIFNVESSGQFNSDVLFLESVKVLKLKC 362
[86][TOP]
>UniRef100_B8MRS0 DNA-directed RNA polymerase I and III subunit Rpc40, putative n=1
Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MRS0_TALSN
Length = 373
Score = 108 bits (269), Expect = 2e-22
Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ I++E H ++G+G HAK+SPVATA YR+LPE+ + RP+ +A P
Sbjct: 212 IAKLRPGQVIELEMHCVKGIGADHAKFSPVATATYRLLPEIRILRPIIGEDAKKFAKCFP 271
Query: 182 ANVFDLE-----DVAGRGGG-DGF----GVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V E + A +G G +G V P T+ REC+R E V L R R
Sbjct: 272 KGVIGFEKITPAEAAQKGSGYEGHTGEDKAVVVDPFKDTVSRECLRHDEFKDKVKLGRVR 331
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F++ES+G P LF +++ VL KC
Sbjct: 332 DHFIFNIESTGQFPSDTLFLESVTVLKLKC 361
[87][TOP]
>UniRef100_B6GYD0 Pc12g12250 protein n=1 Tax=Penicillium chrysogenum Wisconsin
54-1255 RepID=B6GYD0_PENCW
Length = 374
Score = 108 bits (269), Expect = 2e-22
Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+I++E H +G+G HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 213 IAKLRPGQKIEMELHCQKGIGADHAKFSPVATASYRLLPDIKIERPIIGDDAKKFAKCFP 272
Query: 182 ANVFDLEDVAGRGG---GDGFGVSVARPRAC-------TMCRECIRLPELAGAVDLTRRR 331
V LE V G G+ +A T+ REC+R E G V L R R
Sbjct: 273 KGVIGLEPVTSEEAAQPGSGYEGHAGEQKAVVKDAFNDTVSRECLRHEEFQGKVKLGRVR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F+VES+G LF +A+ V+ KC
Sbjct: 333 DHFIFNVESTGQFESDMLFLEAIKVMKLKC 362
[88][TOP]
>UniRef100_Q171Q8 DNA-directed RNA polymerase n=1 Tax=Aedes aegypti
RepID=Q171Q8_AEDAE
Length = 335
Score = 107 bits (267), Expect = 4e-22
Identities = 61/147 (41%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
++K+RPG E DI+ A++G+G+ HAK+SPVATA YR+LPEV L RP+ +A L
Sbjct: 194 ISKMRPGHEFDIKLFAMKGIGKDHAKFSPVATASYRLLPEVRLTRPVVGRDALLLQKCFS 253
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ D V AR +C+ R R P++A AV L+R R HF+F+VES
Sbjct: 254 PGVIEIDK------DDQAYVKDARYDSCS--RNVYRYPQIADAVTLSRVRNHFIFNVESL 305
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A VL KC++ LD +
Sbjct: 306 GALKPDVIFVEAAKVLKKKCKMFLDEI 332
[89][TOP]
>UniRef100_Q6FXP6 Strain CBS138 chromosome B complete sequence n=1 Tax=Candida
glabrata RepID=Q6FXP6_CANGA
Length = 334
Score = 107 bits (267), Expect = 4e-22
Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 6/148 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + H I G G+ HAK+SPVATA YR+LP + + P+ A A P
Sbjct: 193 LAKLRPGQEISLSTHCILGEGKDHAKFSPVATASYRLLPHIEILEPITGDSAKRFQACFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + + G+ + V PR T+ RE +R E G V L R R+HFVF+VES+
Sbjct: 253 KGVIGINE-----NGEAY---VLDPRKDTVSREVLRHEEFEGKVKLGRVRDHFVFNVEST 304
Query: 362 GVRPPVDLFRDALDVL------VAKCQV 427
G P D+ ++D+L + KCQ+
Sbjct: 305 GAMQPEDIVLKSIDILKKKAEYLKKCQI 332
[90][TOP]
>UniRef100_B9WBJ1 DNA-directed RNA polymerases I and III subunit, putative n=1
Tax=Candida dubliniensis CD36 RepID=B9WBJ1_CANDC
Length = 336
Score = 107 bits (267), Expect = 4e-22
Identities = 58/141 (41%), Positives = 83/141 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + AH + G+G HAK+SPVATA YR+LP + +++P+ A P
Sbjct: 195 LAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDIKQPITGELAKKFQKCFP 254
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + D G+ V R T+ RE +R PE G V L R+R+HF+F+VES+
Sbjct: 255 PGVIGI-DTNGK-------AYVKDARKDTVSREVLRHPEFDGKVQLGRQRDHFIFNVEST 306
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G PP ++F ++ +L K +
Sbjct: 307 GAMPPAEIFFKSVRLLKNKAE 327
[91][TOP]
>UniRef100_A7AQ72 DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein n=1 Tax=Babesia bovis
RepID=A7AQ72_BABBO
Length = 319
Score = 107 bits (266), Expect = 5e-22
Identities = 62/144 (43%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR--RPLASAEASTLVAA 175
L KL PGQEID++A+ +G+G+ HAKWSPV TA YR P++T PL + E LV
Sbjct: 174 LTKLSPGQEIDLKAYLEKGIGKTHAKWSPVCTAVYRFKPDITFSEDEPLTNDEVEELVQI 233
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-RLPELAGAVDLTRRREHFVFSV 352
CP VF + GR ++ RP CT CR C+ R P+ V + + HF+FSV
Sbjct: 234 CPMGVFSAD--KGR-------ITTIRPYNCTSCRACLERFPK---RVIIKKLSNHFIFSV 281
Query: 353 ESSGVRPPVDLFRDALDVLVAKCQ 424
ES+G P LF A+ VL K Q
Sbjct: 282 ESTGAIPSGQLFLKAIGVLKEKSQ 305
[92][TOP]
>UniRef100_Q59ZF5 Putative uncharacterized protein RPC40 n=1 Tax=Candida albicans
RepID=Q59ZF5_CANAL
Length = 369
Score = 107 bits (266), Expect = 5e-22
Identities = 58/141 (41%), Positives = 82/141 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + AH + G+G HAK+SPVATA YR+LP + ++ P+ A P
Sbjct: 228 LAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDIKEPITGELAKKFQKCFP 287
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + D G+ V R T+ RE +R PE G V L R+R+HF+F+VES+
Sbjct: 288 PGVIGI-DANGK-------AYVKDARKDTVSREVLRHPEFDGKVQLGRQRDHFIFNVEST 339
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G PP ++F ++ +L K +
Sbjct: 340 GAMPPAEIFFKSVRLLKNKAE 360
[93][TOP]
>UniRef100_C8VNX6 DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) n=2 Tax=Emericella
nidulans RepID=C8VNX6_EMENI
Length = 373
Score = 107 bits (266), Expect = 5e-22
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ+I++E H I+G+G HAK+SPVATA YR++P + + RP+ +A P
Sbjct: 213 VAKLRPGQKIELEMHCIKGIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKKFAKCFP 272
Query: 182 ANVFDLEDVAG---------RGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRRE 334
V LE + RG G V T+ REC+R E G V L R R+
Sbjct: 273 KGVIGLEPITAEDERQNAEYRGRGGELKAVVRDAFNDTVSRECLRHDEFKGKVKLGRIRD 332
Query: 335 HFVFSVESSGVRPPVDLFRDALDVLVAKC 421
HF+F++ES+G LF +++ VL KC
Sbjct: 333 HFIFNIESTGQFDSDVLFLESVKVLKLKC 361
[94][TOP]
>UniRef100_C5M6J2 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Candida tropicalis MYA-3404 RepID=C5M6J2_CANTT
Length = 337
Score = 107 bits (266), Expect = 5e-22
Identities = 57/141 (40%), Positives = 81/141 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI + AH I G+G HAK+SPVATA YR+LP + ++ P+ A P
Sbjct: 195 IAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPVIDIKEPITGKLAEKFQKCFP 254
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ G VA R T+ RE +R PE G V L R+R+HF+F+VES+
Sbjct: 255 PGVIGIDSKTGE-------AYVADARKDTVSREVLRHPEFDGKVKLGRQRDHFIFNVEST 307
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 308 GAMTPDEIFCKSVRILKNKAE 328
[95][TOP]
>UniRef100_C4YIK8 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Candida albicans RepID=C4YIK8_CANAL
Length = 336
Score = 107 bits (266), Expect = 5e-22
Identities = 58/141 (41%), Positives = 82/141 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + AH + G+G HAK+SPVATA YR+LP + ++ P+ A P
Sbjct: 195 LAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDIKEPITGELAKKFQKCFP 254
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + D G+ V R T+ RE +R PE G V L R+R+HF+F+VES+
Sbjct: 255 PGVIGI-DANGK-------AYVKDARKDTVSREVLRHPEFDGKVQLGRQRDHFIFNVEST 306
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G PP ++F ++ +L K +
Sbjct: 307 GAMPPAEIFFKSVRLLKNKAE 327
[96][TOP]
>UniRef100_B4JB45 GH11517 n=1 Tax=Drosophila grimshawi RepID=B4JB45_DROGR
Length = 333
Score = 106 bits (265), Expect = 7e-22
Identities = 58/147 (39%), Positives = 90/147 (61%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+G+ HAK+SPVATAFYR+LP++TL R ++ +A L
Sbjct: 192 IAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAFYRLLPQITLTREVSGKDAYLLQNCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR +C+ R R P+LA AV + R R+H++FSVES
Sbjct: 252 PGVIGIDE------NECAYVKDARYDSCS--RNVYRYPQLADAVIMARVRDHYIFSVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 304 GALKPEVIFLEAVKVLKKKCRAFIDEI 330
[97][TOP]
>UniRef100_B0W725 DNA-directed RNA polymerase I 40 kDa polypeptide n=1 Tax=Culex
quinquefasciatus RepID=B0W725_CULQU
Length = 335
Score = 106 bits (265), Expect = 7e-22
Identities = 59/147 (40%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
++++RPG E DI+ A++GVG+ HAK+SPVATA YR+LPE+ L+RP+ +A L
Sbjct: 194 ISRMRPGHEFDIKLFAVKGVGKDHAKFSPVATASYRLLPEIHLKRPVVGNQALLLQKCFS 253
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ D V AR +C+ R R P+LA +V ++R R HF+F+VES
Sbjct: 254 PGVIEIDK------DDQAYVKDARYDSCS--RNVYRYPQLADSVTMSRVRNHFIFNVESL 305
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A VL KC++ LD +
Sbjct: 306 GALKPDAIFVEAAKVLKKKCKMFLDEI 332
[98][TOP]
>UniRef100_Q5KIG6 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans
RepID=Q5KIG6_CRYNE
Length = 350
Score = 106 bits (264), Expect = 9e-22
Identities = 60/147 (40%), Positives = 83/147 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KLRPGQ++D+ A +GVG HAK+SPVATA YR+LP + LR P+ P
Sbjct: 197 LVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQQKFKGCFP 256
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++E G D V PR T+ RE +R PE V L R R+HF+F+VES+
Sbjct: 257 PGVIEIE--KDENGED--QCVVKNPRKDTVSREVLRHPEFQDLVQLARIRDHFIFNVESA 312
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +L +A+ +L+ K + V + L
Sbjct: 313 GQYSPEELVPEAIKILLGKIKDVEEGL 339
[99][TOP]
>UniRef100_A5DTC9 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Lodderomyces elongisporus RepID=A5DTC9_LODEL
Length = 336
Score = 106 bits (264), Expect = 9e-22
Identities = 58/141 (41%), Positives = 84/141 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + H I G+G HAK+SPVATA YR+LP + ++ P+ A P
Sbjct: 195 LAKLRPGQEISMRVHCILGLGCDHAKFSPVATASYRLLPVIDIKEPITGDLARKFQKCFP 254
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++D G+ + V R T+ RE +R PE G V L R+R++F+F+VES+
Sbjct: 255 PGVIGIKD-----DGEAY---VEDARKDTVSREVLRHPEFEGKVKLGRQRDYFIFNVEST 306
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G PP ++F ++ VL +K +
Sbjct: 307 GAMPPCEIFLKSIRVLKSKAE 327
[100][TOP]
>UniRef100_Q235X0 DNA-directed RNA polymerase I 40 kDa polypeptide n=1
Tax=Tetrahymena thermophila SB210 RepID=Q235X0_TETTH
Length = 336
Score = 105 bits (263), Expect = 1e-21
Identities = 54/140 (38%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLR QEI E +G+G+ HAKWSPV TA+YR++PE+ + + A+A L CP
Sbjct: 201 VAKLRENQEIICEVICQKGIGKTHAKWSPVCTAYYRLMPEININSDITGAKAQELKERCP 260
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRL-PELAGAVDLTRRREHFVFSVES 358
V+D+++ V+ RACTMCRECIR E ++L +++EHF+ SV
Sbjct: 261 LKVYDVQNNK---------AIVSNERACTMCRECIREDEEFNSKIELAKKKEHFIQSV-- 309
Query: 359 SGVRPPVDLFRDALDVLVAK 418
G+ P ++ ++A+ +L K
Sbjct: 310 -GIYEPHEIVKEAIQILKQK 328
[101][TOP]
>UniRef100_A0D2I2 Chromosome undetermined scaffold_35, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D2I2_PARTE
Length = 316
Score = 105 bits (263), Expect = 1e-21
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLR QE+++ +GVG+ HAKWSPV TAFY+++P +T++ L + L + CP
Sbjct: 179 IAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLASICP 238
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE-LAGAVDLTRRREHFVFSVES 358
VF ++ G + V PR CT CREC+R V+L + HF+FS+ES
Sbjct: 239 MKVFGIK---------GNQIKVVNPRNCTTCRECVREANGFEKDVELNKIDNHFIFSIES 289
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVL 433
G D+ A+DV +K Q+ +
Sbjct: 290 VGQYEAKDIMLQAIDVFRSKVQLYI 314
[102][TOP]
>UniRef100_A8PVP1 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS
7966 RepID=A8PVP1_MALGO
Length = 213
Score = 105 bits (263), Expect = 1e-21
Identities = 62/150 (41%), Positives = 92/150 (61%), Gaps = 3/150 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQ +++E H +G+G+ HAK+SPVATA YR+LP + + +P+ ++ P
Sbjct: 66 IAKLAPGQGMEMELHCEKGIGKDHAKFSPVATATYRLLPLIEILKPIPEPLIPKFISCFP 125
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
E V +GG + GV VA R T+ RE +R PE G V L R ++HF+FSVES+
Sbjct: 126 ------EGVIHKGGEN--GVYVADARKDTVTREVLRYPEFEGYVRLGRIQDHFLFSVEST 177
Query: 362 GVRPPVDLFRDALDVL---VAKCQVVLDAL 442
GV P DL +++VL +A ++ LDA+
Sbjct: 178 GVYEPEDLLPASIEVLRKKIALLKLALDAI 207
[103][TOP]
>UniRef100_C4JJM6 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Uncinocarpus reesii 1704 RepID=C4JJM6_UNCRE
Length = 378
Score = 105 bits (262), Expect = 2e-21
Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 10/150 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ+IDIE H I+G+G+ HAK+SPVATA YR+LP++ + RP+ +A P
Sbjct: 210 LAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGDDAVKFANCFP 269
Query: 182 ANVFDLEDV-AGRGGGDGFGVS---------VARPRACTMCRECIRLPELAGAVDLTRRR 331
V +E V A G G V P T+ REC+R E V L R R
Sbjct: 270 PGVIGIEHVTADEAEQKGTGYEGHKGEKKAVVVDPFKDTVSRECLRHEEFKDKVKLGRIR 329
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
+HF+F++ES G LF +++ VL KC
Sbjct: 330 DHFIFNIESVGQFNSDLLFIESVKVLRLKC 359
[104][TOP]
>UniRef100_UPI000186EDAD DNA-directed RNA polymerase I 40 kDa polypeptide, putative n=1
Tax=Pediculus humanus corporis RepID=UPI000186EDAD
Length = 347
Score = 105 bits (261), Expect = 2e-21
Identities = 59/147 (40%), Positives = 87/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KLRPGQE+D++ HA++G+G+ H K+SPVATAFYRMLPE+T+ + + A L
Sbjct: 193 LNKLRPGQELDLKLHAVKGLGKDHTKFSPVATAFYRMLPEITMVKKVTGEAAERLQNCFS 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + G + + VA R + R R +L V++ R R HF+F++ES
Sbjct: 253 PGVIEIRE-NDEGEKEAY---VASARYDSGSRIVFRQEDLKDCVEMKRVRNHFIFNIESV 308
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP +LF +A+ VL KC +L L
Sbjct: 309 GAIPPNELFVEAVKVLKNKCFKLLQEL 335
[105][TOP]
>UniRef100_UPI0001AE7263 UPI0001AE7263 related cluster n=1 Tax=Homo sapiens
RepID=UPI0001AE7263
Length = 242
Score = 105 bits (261), Expect = 2e-21
Identities = 58/147 (39%), Positives = 84/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 113 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 172
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V G +R +L V L R R+H++FSVES+
Sbjct: 173 PGVIEVQEVQG-----------------------MRNEKLKKVVRLARVRDHYIFSVEST 209
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 210 GVLPPDVLVSEAIKVLMGKCRRFLDEL 236
[106][TOP]
>UniRef100_Q5JTE0 Polymerase (RNA) I polypeptide C, 30kDa (Fragment) n=2 Tax=Homo
sapiens RepID=Q5JTE0_HUMAN
Length = 200
Score = 105 bits (261), Expect = 2e-21
Identities = 58/147 (39%), Positives = 84/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 71 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 130
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V G +R +L V L R R+H++FSVES+
Sbjct: 131 PGVIEVQEVQG-----------------------MRNEKLKKVVRLARVRDHYIFSVEST 167
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 168 GVLPPDVLVSEAIKVLMGKCRRFLDEL 194
[107][TOP]
>UniRef100_C9SI18 DNA-directed RNA polymerases I and III subunit RPAC1 n=1
Tax=Verticillium albo-atrum VaMs.102 RepID=C9SI18_9PEZI
Length = 375
Score = 104 bits (260), Expect = 3e-21
Identities = 60/151 (39%), Positives = 88/151 (58%), Gaps = 11/151 (7%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ ++++ H +G+G HAK+SPVATA YR+LP +T+ RP+ A+A P
Sbjct: 213 LAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRLLPTITITRPILGADADKFARCFP 272
Query: 182 ANVFDLEDV---------AGRGGGDGFGVSVAR-PRACTMCRECIRLPELAGAVDLTRRR 331
A V +E V +G G +G +V R T+ REC+R E G V L RRR
Sbjct: 273 AGVIGIERVSADEARTPGSGYEGHEGERKAVVRDAMKDTVSRECLRHAEFQGKVKLGRRR 332
Query: 332 EHFVFSVE-SSGVRPPVDLFRDALDVLVAKC 421
+HF+F++E ++G +L +A+ + KC
Sbjct: 333 DHFIFAIEAATGQWDSDELLLEAIKTMKKKC 363
[108][TOP]
>UniRef100_A4HY87 DNA-directed RNA polymerase, alpha subunit, putative n=1
Tax=Leishmania infantum RepID=A4HY87_LEIIN
Length = 442
Score = 104 bits (259), Expect = 3e-21
Identities = 55/153 (35%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L+KL PGQ I ++A A++G+G VHAKWSPV+ +Y M V L L + A LV +CP
Sbjct: 276 LSKLGPGQRIKLKAIAVKGLGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALVKSCP 335
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAG--------AVDLTRRREH 337
A VF E GG G +V P CT+CREC+R + V + + + H
Sbjct: 336 AGVFGYE-----GGQKGAAATVVAPEKCTLCRECLRSDDKGAEAAASEGDRVRVQKEKTH 390
Query: 338 FVFSVESSGVRPPVDLFRDALDVLVAKCQVVLD 436
+F +ES G P + R L + +C+ + +
Sbjct: 391 VLFHIESVGQLHPAQILRFGLRLFAERCRALAE 423
[109][TOP]
>UniRef100_A0D420 Chromosome undetermined scaffold_37, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0D420_PARTE
Length = 316
Score = 104 bits (259), Expect = 3e-21
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 1/145 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLR QE+++ +GVG+ HAKWSPV TAFY+++P +T++ L + L + CP
Sbjct: 179 IAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQLDAQRQEKLASLCP 238
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE-LAGAVDLTRRREHFVFSVES 358
VF G G + V PR CT CREC+R V+L + HF+FS+ES
Sbjct: 239 MKVF---------GVKGNQIKVVNPRNCTTCRECVREANGFEKDVELNKIDNHFIFSIES 289
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVL 433
G D+ A++V +K Q+ +
Sbjct: 290 VGQYEAKDIMLQAIEVFRSKVQLYI 314
[110][TOP]
>UniRef100_C4XY85 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC
42720 RepID=C4XY85_CLAL4
Length = 333
Score = 104 bits (259), Expect = 3e-21
Identities = 57/139 (41%), Positives = 83/139 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + H + GVG HAK+SPVATA YR++P + + P++ +A P
Sbjct: 192 LAKLRPGQEISLRVHCVLGVGSDHAKFSPVATASYRLMPVIDILEPISGEQAVRFQKCFP 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V +++ G+ + VA R T+ RE +R E +G V L R REHF+F+VES+
Sbjct: 252 SGVIGIDE-----KGEAY---VADARKDTVSREVLRHEEFSGKVKLGRDREHFIFNVEST 303
Query: 362 GVRPPVDLFRDALDVLVAK 418
G P ++F ++ VL K
Sbjct: 304 GAMSPAEIFLKSVRVLKNK 322
[111][TOP]
>UniRef100_UPI000175846B PREDICTED: similar to CG3756 CG3756-PA n=1 Tax=Tribolium castaneum
RepID=UPI000175846B
Length = 338
Score = 103 bits (256), Expect = 8e-21
Identities = 59/147 (40%), Positives = 85/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AK+RPG E+D++ A++ GR HAK+SPVATAFYR+LP++ L R + A L
Sbjct: 194 IAKMRPGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGEAAERLQKCFS 253
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + GR + V VA R T R R +L AV +T+ ++HF+F+VES
Sbjct: 254 PGVISIRHEKGR----KYAV-VANARYDTGSRNVFRYEDLKDAVAMTKIQDHFIFTVESV 308
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP +F +A+ +L KC +LD L
Sbjct: 309 GALPPDVIFMEAVKILKDKCLALLDEL 335
[112][TOP]
>UniRef100_UPI00005A26F8 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 6 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F8
Length = 328
Score = 103 bits (256), Expect = 8e-21
Identities = 57/147 (38%), Positives = 83/147 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++++V + R +L V L R R+H++FSVES+
Sbjct: 259 PGVIEVQEV-----------------------QVFRKEKLKKVVRLARVRDHYIFSVEST 295
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
GV PP L +A+ VL+ KC+ LD L
Sbjct: 296 GVLPPDVLVSEAIKVLMGKCRRFLDEL 322
[113][TOP]
>UniRef100_UPI000180C3EB PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Ciona intestinalis
RepID=UPI000180C3EB
Length = 345
Score = 102 bits (254), Expect = 1e-20
Identities = 56/147 (38%), Positives = 89/147 (60%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPG +D++ HA++GVG+ HAK+SPVATA YR+LP++ L + +++A L
Sbjct: 193 VAKLRPGHILDVKLHAVKGVGQDHAKFSPVATASYRLLPQIRLLDQILNSDAEDLQRCFA 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +E + G V AR C+ RE +R P L V+L++ R+HF++S+ESS
Sbjct: 253 PGV--IEVYRNKNGDQEARVVDARKDTCS--REVLRHPHLKDRVELSKVRDHFIYSIESS 308
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
P +L A+ +++ KC+ +L L
Sbjct: 309 VAITPNELMCRAIKIMMGKCRTLLQEL 335
[114][TOP]
>UniRef100_B4KGY1 GI17014 n=1 Tax=Drosophila mojavensis RepID=B4KGY1_DROMO
Length = 333
Score = 102 bits (254), Expect = 1e-20
Identities = 56/147 (38%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+G+ HAK+SPVATA+YR+LP++ L R + +A L +
Sbjct: 192 IAQLRPGHELDLRLIAVKGIGKDHAKFSPVATAYYRLLPQINLTREVRGKDAYLLQSCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR +C+ R R P LA AV + R R+H++FSVES
Sbjct: 252 PGVIGIDE------NECAYVKDARYDSCS--RNVFRYPHLADAVTMGRVRDHYIFSVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 304 GALKPEVIFLEAVRVLKKKCRSFIDEI 330
[115][TOP]
>UniRef100_B3N4C9 GG25034 n=1 Tax=Drosophila erecta RepID=B3N4C9_DROER
Length = 329
Score = 102 bits (254), Expect = 1e-20
Identities = 57/147 (38%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+GR HAK+SPVATA YR+LP++ L R ++ +A L +
Sbjct: 188 IAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKDAYLLQSCFS 247
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR C+ R R P+L AV L+R R+H++FSVES
Sbjct: 248 PGVIGIDE------NETAYVKDARYDTCS--RNVYRYPQLNDAVTLSRIRDHYIFSVESV 299
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 300 GALKPDVIFLEAVKVLKRKCRAFIDEI 326
[116][TOP]
>UniRef100_B3LK74 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=3
Tax=Saccharomyces cerevisiae RepID=B3LK74_YEAS1
Length = 335
Score = 102 bits (254), Expect = 1e-20
Identities = 58/141 (41%), Positives = 82/141 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI ++AH I G+G HAK+SPV+TA YR+LP++ + +P+ A P
Sbjct: 193 LAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ G D V AR T+ RE +R E A V L R R HF+F+VESS
Sbjct: 253 PGVIGIDE-----GSDEAYVKDARKD--TVSREVLRYEEFADKVKLGRVRNHFIFNVESS 305
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 306 GAMTPEEIFFKSVRILKNKAE 326
[117][TOP]
>UniRef100_UPI000023F302 hypothetical protein FG00365.1 n=1 Tax=Gibberella zeae PH-1
RepID=UPI000023F302
Length = 381
Score = 102 bits (253), Expect = 2e-20
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRP Q I++ H +G+G HAK+SPVATA YR+LP +T+ +P+ A+A P
Sbjct: 220 IAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLPTITITQPILGADAEKFAKCFP 279
Query: 182 ANVFDLEDVAGRGG---GDGFGVSVARPRAC-------TMCRECIRLPELAGAVDLTRRR 331
V LE V G G+ +A T+ RE +R E G V L RRR
Sbjct: 280 KGVIGLEKVTAEDAAKTGSGYEGHKGETKAVVVDAMKDTVSREALRHEEFQGKVKLGRRR 339
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+FS+ES+G +LF +++ L KC+
Sbjct: 340 DHFIFSIESTGQWDSDELFLESVKHLKLKCK 370
[118][TOP]
>UniRef100_B3S4F3 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens
RepID=B3S4F3_TRIAD
Length = 349
Score = 102 bits (253), Expect = 2e-20
Identities = 54/148 (36%), Positives = 84/148 (56%), Gaps = 3/148 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRM---LPEVTLRRPLASAEASTLVA 172
+AKLRPGQEID+E ++G G HAK+SPV Y + +PE+ L++ + A L
Sbjct: 196 IAKLRPGQEIDLEMICVKGTGADHAKFSPVGNNLYLLVWLMPEIILKQAVTGKRAKRLAK 255
Query: 173 ACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSV 352
P V ++++ G + +PR T R+ +R PEL V L + R+HF+F +
Sbjct: 256 CFPEGVIGIKEIKGIKTA-----YIDKPRLDTCSRQVLRDPELKEHVILNKIRDHFIFCI 310
Query: 353 ESSGVRPPVDLFRDALDVLVAKCQVVLD 436
ES+G PP D+FR+++ +L KC L+
Sbjct: 311 ESTGSIPPADIFRESVKILRQKCHKFLE 338
[119][TOP]
>UniRef100_Q75A87 ADR031Cp n=1 Tax=Eremothecium gossypii RepID=Q75A87_ASHGO
Length = 364
Score = 102 bits (253), Expect = 2e-20
Identities = 57/141 (40%), Positives = 81/141 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + H I G+G HAK+SPVATA YR++P + + P+ +A V P
Sbjct: 223 LAKLRPGQEISLRVHCILGIGSDHAKFSPVATASYRLMPYINIVEPITGPDAEKFVKCFP 282
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + + G+ F V R T+ RE +R PEL V L R R+HF+F+VES+
Sbjct: 283 PGVAAINE-----KGEAF---VQDARKDTVSREVLRHPELEQKVKLGRVRDHFIFNVESA 334
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 335 GAMTPEEIFFKSVRILKNKAE 355
[120][TOP]
>UniRef100_Q2HFB1 Putative uncharacterized protein n=1 Tax=Chaetomium globosum
RepID=Q2HFB1_CHAGB
Length = 374
Score = 102 bits (253), Expect = 2e-20
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI + H +GVG H+K+SPVATA YR++P +++ RP+ +A + P
Sbjct: 213 IAKLRPGQEISLSMHMHKGVGSDHSKFSPVATASYRLMPVISIERPILGKDAEKFMRCFP 272
Query: 182 ANVFDLEDV---------AGRGGGDGFGVS-VARPRACTMCRECIRLPELAGAVDLTRRR 331
V LE V +G G +G + VA P T+ REC+R E G V L RRR
Sbjct: 273 PGVIKLEKVTKKEAAKKGSGYEGHEGEDKAVVADPMRDTVSRECLRHEEFKGKVKLGRRR 332
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF++ VES+G +F +++ L + Q
Sbjct: 333 DHFIYLVESTGQWESDAIFLESVAHLKKRAQ 363
[121][TOP]
>UniRef100_Q4QDF5 DNA-directed RNA polymerase, alpha subunit, putative n=1
Tax=Leishmania major RepID=Q4QDF5_LEIMA
Length = 442
Score = 101 bits (252), Expect = 2e-20
Identities = 54/153 (35%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL PGQ I ++A A++G G VHAKWSPV+ +Y M V L L + A L+ +CP
Sbjct: 276 LTKLGPGQRIKLKAIAVKGFGAVHAKWSPVSACYYEMKTSVELCERLTGSAAEALIKSCP 335
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAG--------AVDLTRRREH 337
A VF E GG G +V P CT+CREC+R + V + + + H
Sbjct: 336 AGVFGYE-----GGQRGAAATVVAPEKCTLCRECLRSEDKGAEAAANKGDRVRVQKDKTH 390
Query: 338 FVFSVESSGVRPPVDLFRDALDVLVAKCQVVLD 436
+F +ES G P + R L + +C+ + +
Sbjct: 391 VLFHIESVGQLHPAQILRFGLRLFAERCRALAE 423
[122][TOP]
>UniRef100_B4LUA3 GJ24400 n=1 Tax=Drosophila virilis RepID=B4LUA3_DROVI
Length = 333
Score = 101 bits (252), Expect = 2e-20
Identities = 55/147 (37%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+G+ HAK+SPVATA+YR+LP++ L R + +A L +
Sbjct: 192 IAQLRPGHELDLRLIAVKGLGKDHAKFSPVATAYYRLLPQINLTREVTGKDAYLLQSCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR +C+ R R P LA AV + R R+H++F+VES
Sbjct: 252 PGVIGIDE------NECAYVKDARYDSCS--RNVYRYPHLADAVTMARVRDHYIFNVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 304 GALKPEVIFLEAVKVLKKKCRSFIDEI 330
[123][TOP]
>UniRef100_Q6BV37 DEHA2C05654p n=1 Tax=Debaryomyces hansenii RepID=Q6BV37_DEBHA
Length = 335
Score = 101 bits (252), Expect = 2e-20
Identities = 58/141 (41%), Positives = 80/141 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRP QEI + AH I GVG HAK+SPVATA YR++P +T+ P+ P
Sbjct: 194 LAKLRPNQEISLRAHCILGVGSDHAKFSPVATASYRLMPVITITEPIKGESGKRFQKCFP 253
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V D+ +G V V R T+ RE +R E G V L R+R+HF+F+VES+
Sbjct: 254 SGVIDINK-------NGEAV-VKDSRKDTVSREVLRHEEFNGKVKLGRKRDHFIFNVEST 305
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ VL K +
Sbjct: 306 GAMSPEEIFFKSVRVLKNKAE 326
[124][TOP]
>UniRef100_C7YHM9 Predicted protein n=1 Tax=Nectria haematococca mpVI 77-13-4
RepID=C7YHM9_NECH7
Length = 381
Score = 101 bits (251), Expect = 3e-20
Identities = 58/151 (38%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRP Q I++ H +G+G HAK+SPVATA YR+LP +T+ +P+ A+A P
Sbjct: 220 IAKLRPRQTINLAMHMHKGIGADHAKFSPVATASYRLLPTITITKPILGADADKFAKCFP 279
Query: 182 ANVFDLEDVAGR---GGGDGFGVSVARPRAC-------TMCRECIRLPELAGAVDLTRRR 331
V LE V G G+ +A T+ RE +R E G V L RRR
Sbjct: 280 QGVIGLERVTAEEAAQAGSGYEGHEGETKAVVVDAMKDTVSREVLRHEEFEGKVKLGRRR 339
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+FS+ES+G +LF +++ L KC+
Sbjct: 340 DHFIFSIESTGQWDSDELFLESVKHLKLKCK 370
[125][TOP]
>UniRef100_A4R0T4 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea
RepID=A4R0T4_MAGGR
Length = 373
Score = 101 bits (251), Expect = 3e-20
Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQ ID+E HA G G HAK+SPV TA YR++P + + +P+ A+A P
Sbjct: 212 IAKLRPGQGIDLEMHAHIGYGWDHAKFSPVCTASYRLMPIIDIVKPIVGADAEKFRDCFP 271
Query: 182 ANVFDLEDVA---GRGGGDGF-------GVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V L+ V + G G+ V P T+ REC+R E G V L RRR
Sbjct: 272 DGVIRLQPVTAAEAKEKGSGYEGHKGEMKAVVNDPMRDTVSRECLRHAEFEGKVKLGRRR 331
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF+FS+ES+G +LF ++ L +KC+
Sbjct: 332 DHFIFSIESAGQWDSDELFLASIAELKSKCK 362
[126][TOP]
>UniRef100_P07703 DNA-directed RNA polymerases I and III subunit RPAC1 n=3
Tax=Saccharomyces cerevisiae RepID=RPAC1_YEAST
Length = 335
Score = 101 bits (251), Expect = 3e-20
Identities = 57/141 (40%), Positives = 82/141 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI ++AH I G+G HAK+SPV+TA YR+LP++ + +P+ A P
Sbjct: 193 LAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ G D V AR T+ RE +R E A V L R R HF+F+VES+
Sbjct: 253 PGVIGIDE-----GSDEAYVKDARKD--TVSREVLRYEEFADKVKLGRVRNHFIFNVESA 305
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 306 GAMTPEEIFFKSVRILKNKAE 326
[127][TOP]
>UniRef100_A9BKT2 Rpa5 n=1 Tax=Cryptophyta RepID=A9BKT2_9CRYP
Length = 335
Score = 100 bits (250), Expect = 4e-20
Identities = 55/148 (37%), Positives = 85/148 (57%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL PGQ+I+ E ++ G+G HAK+SPV + FY++ P++ + + EA LV CP
Sbjct: 182 IAKLNPGQKIECECESLIGIGNNHAKFSPVGSTFYKIFPKIKIISEIFGKEAVFLVQKCP 241
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE-LAGAVDLTRRREHFVFSVES 358
VFDLE+ + F V+ P CTMC+ECI P+ + + + R + F +E+
Sbjct: 242 MKVFDLEEFSLFSLKRLF---VSSPNYCTMCKECIDFPKYVVPKIRIGRNNQKITFIIET 298
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G+ P LF A+ +LV KC L +L
Sbjct: 299 TGIFSPEILFHRAIFLLVGKCNQSLLSL 326
[128][TOP]
>UniRef100_C5DTY7 ZYRO0C12364p n=1 Tax=Zygosaccharomyces rouxii CBS 732
RepID=C5DTY7_ZYGRC
Length = 335
Score = 100 bits (249), Expect = 5e-20
Identities = 58/141 (41%), Positives = 77/141 (54%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + AH I GVG HAK+SPVATA YR+LP + +R P+ A P
Sbjct: 193 LAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLLPHIDIREPIKGELAQKFQKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + + V R T+ RE +R E + V L R R+HFVF+VES+
Sbjct: 253 PGVIGINESTDE-------AYVQDARKDTVSREVLRHEEFSNKVKLGRVRDHFVFNVEST 305
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ VL K +
Sbjct: 306 GAMTPEEIFFKSVRVLKNKAE 326
[129][TOP]
>UniRef100_B2A971 Predicted CDS Pa_1_8610 n=1 Tax=Podospora anserina
RepID=B2A971_PODAN
Length = 372
Score = 100 bits (249), Expect = 5e-20
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI+++ H +GVG HAK+SPVATA YR++P +T+ +P+ +A P
Sbjct: 211 IAKLRPGQEINVQMHMHKGVGSDHAKFSPVATASYRIMPTITITQPILGRDAEKFQRCFP 270
Query: 182 ANVFDLEDV---------AGRGGGDG-FGVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V LE V +G G +G V P++ T+ RE +R E V L RRR
Sbjct: 271 KGVIGLEKVTAEEAAQKGSGYEGHEGELKAVVVDPKSDTVSREALRHEEFKDKVKLGRRR 330
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+HF++ VES+G +F +++ L AK + +
Sbjct: 331 DHFIYLVESTGQWKSDAIFLESVSHLKAKAKAL 363
[130][TOP]
>UniRef100_B4NW96 GE11271 n=1 Tax=Drosophila yakuba RepID=B4NW96_DROYA
Length = 333
Score = 100 bits (248), Expect = 7e-20
Identities = 57/147 (38%), Positives = 86/147 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+GR HAK+SPVATA YR+LP + L R ++ +A L +
Sbjct: 192 IAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVSGKDAYLLQSCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR C+ R R P+L AV L R R+H++FSVES
Sbjct: 252 PGVIGIDE------NETAYVKDARYDTCS--RNVYRYPQLNDAVTLARIRDHYIFSVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 304 GALKPDVIFLEAVKVLKRKCRAFIDEI 330
[131][TOP]
>UniRef100_Q9VMX3 CG3756 n=1 Tax=Drosophila melanogaster RepID=Q9VMX3_DROME
Length = 333
Score = 99.8 bits (247), Expect = 9e-20
Identities = 57/147 (38%), Positives = 85/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+GR HAK+SPVATA YR+LP + L R + +A L
Sbjct: 192 IAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR C+ R R P+L AV L R R+H++FSVES
Sbjct: 252 PGVIGIDE------NETAYVKDARYDTCS--RNVYRYPQLNDAVTLARIRDHYIFSVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ ++D +
Sbjct: 304 GALKPDVIFLEAVKVLKRKCRALIDEI 330
[132][TOP]
>UniRef100_B4Q356 GD23312 n=1 Tax=Drosophila simulans RepID=B4Q356_DROSI
Length = 333
Score = 99.4 bits (246), Expect = 1e-19
Identities = 57/147 (38%), Positives = 85/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+GR HAK+SPVATA YR+LP + L R + +A L
Sbjct: 192 IAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKDAYLLQNCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR C+ R R P+L AV L R R+H++FSVES
Sbjct: 252 PGVIGIDE------NETAYVKDARYDTCS--RNVYRYPQLNDAVTLARIRDHYIFSVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ ++D +
Sbjct: 304 GALKPDVIFLEAVKVLKRKCRALIDEI 330
[133][TOP]
>UniRef100_B4I197 GM18508 n=1 Tax=Drosophila sechellia RepID=B4I197_DROSE
Length = 331
Score = 99.4 bits (246), Expect = 1e-19
Identities = 57/147 (38%), Positives = 85/147 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+GR HAK+SPVATA YR+LP + L R + +A L
Sbjct: 190 IAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKDAYLLQNCFS 249
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR C+ R R P+L AV L R R+H++FSVES
Sbjct: 250 PGVIGIDE------NETAYVKDARYDTCS--RNVYRYPQLNDAVTLARIRDHYIFSVESV 301
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ ++D +
Sbjct: 302 GALKPDVIFLEAVKVLKRKCRALIDEI 328
[134][TOP]
>UniRef100_Q4RCT8 Chromosome undetermined SCAF18092, whole genome shotgun sequence.
(Fragment) n=1 Tax=Tetraodon nigroviridis
RepID=Q4RCT8_TETNG
Length = 128
Score = 99.0 bits (245), Expect = 1e-19
Identities = 58/127 (45%), Positives = 74/127 (58%)
Frame = +2
Query: 62 GRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANVFDLEDVAGRGGGDGFGV 241
G+ HAK+SPVATA YR+LPE+TL P+ +A L V DLED GR
Sbjct: 1 GKDHAKYSPVATASYRLLPEITLLEPVEGEKAERLQRCFLPGVIDLEDPNGRKVA----- 55
Query: 242 SVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKC 421
VA R T RE +R +L V L RRR+HF+F+VES+G+ PP L +A+ VL+ KC
Sbjct: 56 RVANSRLDTCSREVLRHDDLKKVVKLGRRRDHFIFTVESTGILPPEVLVTEAIKVLMNKC 115
Query: 422 QVVLDAL 442
Q L L
Sbjct: 116 QRFLSEL 122
[135][TOP]
>UniRef100_A5DPW5 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii
RepID=A5DPW5_PICGU
Length = 333
Score = 99.0 bits (245), Expect = 1e-19
Identities = 54/139 (38%), Positives = 78/139 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI + AH I G+G HAK+SPV+TA YR++ ++ + P+ A P
Sbjct: 193 IAKLRPGQEISLRAHCILGIGSDHAKFSPVSTASYRLMSDIKITEPITGESAKRFQKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V +E+ V R T+ RE +R E G V L R R+HF+F+VES+
Sbjct: 253 SGVIGIENDT---------AFVKDARKDTVSREVLRHEEFNGKVKLGRIRDHFIFNVEST 303
Query: 362 GVRPPVDLFRDALDVLVAK 418
G PP ++F ++ VL K
Sbjct: 304 GAMPPEEIFFKSVRVLKNK 322
[136][TOP]
>UniRef100_B3MVL4 GF21532 n=1 Tax=Drosophila ananassae RepID=B3MVL4_DROAN
Length = 333
Score = 98.6 bits (244), Expect = 2e-19
Identities = 54/147 (36%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+GR HAK+SPVATA YR+LP++ L R ++ +A L +
Sbjct: 192 IAQLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKDAYLLQSCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR +C+ R R P++ +V L R R+H++F+VES
Sbjct: 252 PGVIGIDE------NECAYVKDARYDSCS--RNVYRYPQINDSVTLARVRDHYIFTVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 304 GALKPEVIFLEAVKVLKKKCRSFIDEI 330
[137][TOP]
>UniRef100_A8N510 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea
okayama7#130 RepID=A8N510_COPC7
Length = 356
Score = 98.6 bits (244), Expect = 2e-19
Identities = 53/143 (37%), Positives = 82/143 (57%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KLRPGQ +++E HA++GVG+ HAK++PVATA YR+LP + +++P+ A
Sbjct: 195 LTKLRPGQAVNMELHAVKGVGKDHAKFTPVATASYRLLPHIKIKKPIPPEHAEKFAKCFS 254
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + D V R T+ RE R PE A +V+L+R R++F+F+VES
Sbjct: 255 PGVIKVDPQTKQVSVDEHNV-----RKDTVTREVFRHPEFADSVELSRVRDYFLFNVESE 309
Query: 362 GVRPPVDLFRDALDVLVAKCQVV 430
G P L +A+ V+ K +
Sbjct: 310 GPYAPERLLPEAIKVMREKIATI 332
[138][TOP]
>UniRef100_UPI00002223F9 Hypothetical protein CBG01436 n=1 Tax=Caenorhabditis briggsae AF16
RepID=UPI00002223F9
Length = 367
Score = 98.2 bits (243), Expect = 2e-19
Identities = 56/141 (39%), Positives = 79/141 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI+ HA++G+GR HAK+SPVATA YR+LP + L ++ A L +
Sbjct: 221 VAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLQSVFS 280
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +E + G V V R T R R +LA V L + ++HF+FSVES+
Sbjct: 281 EGVIGIE----KKGAKRIAV-VKDARKDTCSRNVFRHEDLAKVVQLGKNKQHFIFSVEST 335
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G +L +A V+ KC+
Sbjct: 336 GALKSAELVVEACKVMETKCR 356
[139][TOP]
>UniRef100_Q29L21 GA17664 n=1 Tax=Drosophila pseudoobscura pseudoobscura
RepID=Q29L21_DROPS
Length = 333
Score = 98.2 bits (243), Expect = 2e-19
Identities = 54/147 (36%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+G+ HAK+SPVATA+YR+LP++ L R + +A L +
Sbjct: 192 IAQLRPGHELDLRLVAVKGLGKDHAKFSPVATAYYRLLPQIKLNREVYGKDAYLLQSCFS 251
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +++ + V AR +C+ R R P+L +V L R R+H++F+VES
Sbjct: 252 PGVIGIDE------NECAYVKDARYDSCS--RNVYRYPQLEDSVTLGRVRDHYIFTVESV 303
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 304 GSLKPDVIFLEAVKVLKKKCRAFIDEI 330
[140][TOP]
>UniRef100_B0EJB9 DNA-directed RNA polymerases I and III subunit RPAC1, putative n=1
Tax=Entamoeba dispar SAW760 RepID=B0EJB9_ENTDI
Length = 291
Score = 98.2 bits (243), Expect = 2e-19
Identities = 53/147 (36%), Positives = 88/147 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+L+P Q I + +G+G+ HAK+SPV A YR++P++T+ + + + CP
Sbjct: 147 IAELQPHQHIKCKLFCCKGIGQDHAKFSPVCPATYRLMPKITVIKQ-NKKMSKEIKNCCP 205
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED G+ + V PR C MCRECIR E + + L R H++FSVES+
Sbjct: 206 LNVFDIED------GE---LIVKNPRNCKMCRECIR-EERSEYIKLGREENHYLFSVEST 255
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G+ P ++F +A+ ++ +K + ++ L
Sbjct: 256 GIYPAKEIFSEAVKIMKSKAEKLVTEL 282
[141][TOP]
>UniRef100_A8WQE9 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae
RepID=A8WQE9_CAEBR
Length = 698
Score = 98.2 bits (243), Expect = 2e-19
Identities = 56/141 (39%), Positives = 79/141 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI+ HA++G+GR HAK+SPVATA YR+LP + L ++ A L +
Sbjct: 552 VAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLQSVFS 611
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +E + G V V R T R R +LA V L + ++HF+FSVES+
Sbjct: 612 EGVIGIE----KKGAKRIAV-VKDARKDTCSRNVFRHEDLAKVVQLGKNKQHFIFSVEST 666
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G +L +A V+ KC+
Sbjct: 667 GALKSAELVVEACKVMETKCR 687
[142][TOP]
>UniRef100_C5DLD4 KLTH0F12056p n=1 Tax=Lachancea thermotolerans CBS 6340
RepID=C5DLD4_LACTC
Length = 350
Score = 98.2 bits (243), Expect = 2e-19
Identities = 53/141 (37%), Positives = 78/141 (55%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQEI + AH + G+G HAK+SPV+TA YR++P + + +P+ A
Sbjct: 209 LAKLRPGQEISLRAHCVLGIGSDHAKFSPVSTASYRLMPHINITQPITGESAQRFAKCFS 268
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + D G+ F V R T+ RE +R E G V L R + HF+F+VES+
Sbjct: 269 PGVIGIND-----NGEAF---VKDARHDTVSREVLRHEEFEGKVKLGRVKNHFIFNVESA 320
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 321 GAMTPEEIFFKSVRILKNKAE 341
[143][TOP]
>UniRef100_UPI000151BDE7 conserved hypothetical protein n=1 Tax=Pichia guilliermondii ATCC
6260 RepID=UPI000151BDE7
Length = 333
Score = 97.8 bits (242), Expect = 3e-19
Identities = 54/139 (38%), Positives = 78/139 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI + AH I G+G HAK+SPV+TA YR++ ++ + P+ A P
Sbjct: 193 IAKLRPGQEISLRAHCILGIGSDHAKFSPVSTASYRLMSDIKITEPITGELAKRFQKCFP 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V +E+ V R T+ RE +R E G V L R R+HF+F+VES+
Sbjct: 253 SGVIGIENDT---------AFVKDARKDTVSREVLRHEEFNGKVKLGRIRDHFIFNVEST 303
Query: 362 GVRPPVDLFRDALDVLVAK 418
G PP ++F ++ VL K
Sbjct: 304 GAMPPEEIFFKSVRVLKNK 322
[144][TOP]
>UniRef100_C1E0F4 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E0F4_9CHLO
Length = 394
Score = 97.4 bits (241), Expect = 4e-19
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 14/161 (8%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL--RRPLASAEASTLVAA 175
L K+ GQEI++EAH ++G G+ HAKWSPV T +YRM+P+V + L +A +
Sbjct: 238 LCKMVAGQEIELEAHCVKGQGKEHAKWSPVGTTWYRMVPKVEFIDKDYLDGEDADVFMKE 297
Query: 176 CPANVFD--------LEDVAGRGGGDGFGVSVARPRACTMCRECIRL----PELAGAVDL 319
C N FD E G+ G V V R C C E +R P V +
Sbjct: 298 C--NDFDPSHNCYGWFEKDGGKKGEK--CVKVVNERGCDYCLERVRTLCGEPGWDEKVRV 353
Query: 320 TRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+ + HF+F+VE++G PP LF++A+ VL +KCQ VL L
Sbjct: 354 LKSKSHFIFTVETAGQLPPDVLFKEAVKVLASKCQSVLSTL 394
[145][TOP]
>UniRef100_UPI0000DB7696 PREDICTED: similar to RNA polymerase 1-1 n=1 Tax=Apis mellifera
RepID=UPI0000DB7696
Length = 347
Score = 97.1 bits (240), Expect = 6e-19
Identities = 53/147 (36%), Positives = 81/147 (55%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ K+RPGQEI HA++G+G+ HAK+SPVATA YR+LP++ + +P+ A L
Sbjct: 197 ICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPDIQIIKPVKGEMADRLKNCFS 256
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + G D V PR + R + +L G + L R R H +F++ES
Sbjct: 257 IGVIEVIE-NKPGDPDSREARVKNPRYDSCSRNVFQHEDLKGCIRLNRIRNHIIFTIESV 315
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P LF +A+ +L KC+ L+ L
Sbjct: 316 GTLLPSVLFVEAIKILKGKCKTFLEEL 342
[146][TOP]
>UniRef100_A7TDY1 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TDY1_VANPO
Length = 335
Score = 97.1 bits (240), Expect = 6e-19
Identities = 54/141 (38%), Positives = 78/141 (55%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KLRPGQEI ++AH I G+G HAK+SPVATA YR++P + + +P+ +A
Sbjct: 193 LCKLRPGQEISLKAHCILGIGSDHAKFSPVATASYRLMPHINITQPITGEDAKKFQKYFM 252
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V + D G+ + V R T+ RE R PE G V L R R HF+ +VES+
Sbjct: 253 PGVIGIND-----NGEAY---VKDARKDTVSREVFRHPEFEGKVKLGRVRNHFIVNVEST 304
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F ++ +L K +
Sbjct: 305 GAMTPEEIFFKSVRILRNKAE 325
[147][TOP]
>UniRef100_A3GGP5 RNA polymerase III (C) subunit n=1 Tax=Pichia stipitis
RepID=A3GGP5_PICST
Length = 336
Score = 97.1 bits (240), Expect = 6e-19
Identities = 56/141 (39%), Positives = 80/141 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI + AH I GVG HAK+SPV+TA YR++P + + P+ A P
Sbjct: 195 IAKLRPGQEISLRAHCILGVGCDHAKFSPVSTASYRLMPVIDIVEPIRGDSAVRFQKCFP 254
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
+ V + G+ + V R T+ RE +R E G V L R+R+HF+F+VES+
Sbjct: 255 SGVIGI-----NADGEAY---VKDARKDTVSREVLRHEEFDGKVKLGRKRDHFIFNVEST 306
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P ++F +L VL K +
Sbjct: 307 GAMAPEEIFFKSLLVLKNKVE 327
[148][TOP]
>UniRef100_Q7RN53 DNA-directed RNA polymerases i and iii 40 kDa polypeptide n=1
Tax=Plasmodium yoelii yoelii RepID=Q7RN53_PLAYO
Length = 286
Score = 96.3 bits (238), Expect = 9e-19
Identities = 50/141 (35%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVT--LRRPLASAEASTLVAA 175
+ KL GQEI++ +G+G+ HAKWSPV TA Y+M P + + E LV
Sbjct: 143 ITKLGSGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPSFNFDVHEKFTNYEKKDLVTI 202
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP NVFD+E+ + P C+ CR CI + + + + HF+F+VE
Sbjct: 203 CPKNVFDIEESG--------NLVAKNPLDCSSCRACIE--KYPQKITFQKTKNHFIFTVE 252
Query: 356 SSGVRPPVDLFRDALDVLVAK 418
S+G P D+F+ AL++L K
Sbjct: 253 STGCFPSADIFKKALNILKVK 273
[149][TOP]
>UniRef100_Q98S79 DNA-directed RNA polymerase 40k chain n=1 Tax=Guillardia theta
RepID=Q98S79_GUITH
Length = 339
Score = 95.5 bits (236), Expect = 2e-18
Identities = 50/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ K+ PGQEI E H + G HAK+SPV T FYRM P V + + + S ++S+ + CP
Sbjct: 185 ILKINPGQEIHCECHCLINSGLNHAKFSPVGTIFYRMEPYVKILKEIISFDSSSFLKICP 244
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP-ELAGAVDLTRRREHFVFSVES 358
VF++E + G+ + V + CT C+ECI++ + + + R + +ES
Sbjct: 245 TGVFEVEKL-----GNLSRIYVKNSKFCTFCKECIKMNFKSKCIIKIGRNKIKINLIIES 299
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLD 436
+GV P +LF+ A+D+L+ K ++ L+
Sbjct: 300 TGVSSPENLFKRAIDLLIGKSELCLE 325
[150][TOP]
>UniRef100_Q9UAY9 Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans
RepID=Q9UAY9_CAEEL
Length = 366
Score = 95.5 bits (236), Expect = 2e-18
Identities = 55/141 (39%), Positives = 79/141 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI+ HA++G+GR HAK+SPVATA YR+LP + L ++ A L +
Sbjct: 220 VAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFS 279
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +E + G V V R T R R +L+ V L + ++HF+FSVES+
Sbjct: 280 EGVIAIE----KKGAKRIAV-VKDARKDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVEST 334
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G +L +A V+ KC+
Sbjct: 335 GALKSSELVVEACKVMEIKCR 355
[151][TOP]
>UniRef100_Q7SHT0 DNA-directed RNA polymerases I and III 40 kDa polypeptide n=1
Tax=Neurospora crassa RepID=Q7SHT0_NEUCR
Length = 378
Score = 95.1 bits (235), Expect = 2e-18
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 10/151 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AK+RPGQEID+ H +GVG HAK+SPVATA YR++P +T+ P+ +A P
Sbjct: 217 VAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMPTITILEPILGRDAEKFQKCFP 276
Query: 182 ANVFDLEDVA---GRGGGDGFGVSVARPRAC-------TMCRECIRLPELAGAVDLTRRR 331
V LE V + G G+ +A T+ REC+R E V L RRR
Sbjct: 277 EGVIGLEKVTKEEAKKKGSGYEGHEGELKAVVLDAMRDTVSRECLRHDEFKDKVKLGRRR 336
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+HF++ VES+G +F +++ L K +
Sbjct: 337 DHFIYLVESTGQWESDAIFLESIAHLKEKAK 367
[152][TOP]
>UniRef100_Q6C4T2 YALI0E23947p n=1 Tax=Yarrowia lipolytica RepID=Q6C4T2_YARLI
Length = 339
Score = 95.1 bits (235), Expect = 2e-18
Identities = 58/147 (39%), Positives = 79/147 (53%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRP Q I++ G G HAK+SPVATA YR++P +T+ + EA P
Sbjct: 196 IAKLRPNQSINLTMFCHLGFGHDHAKFSPVATASYRLMPTITITGDITGDEAKKFQKCFP 255
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V +LE G VA R T+ RE +R E G V L RRR+HF+F+VESS
Sbjct: 256 KGVIELE---------GGKPVVADARKDTVSREVLRHEEFNGKVKLGRRRDHFIFNVESS 306
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P ++F ++ L AK Q + A+
Sbjct: 307 GALEPDEIFLKSVMELQAKAQTLKAAV 333
[153][TOP]
>UniRef100_UPI00015B4B82 PREDICTED: similar to bifunctional aminoacyl-tRNA synthetase n=1
Tax=Nasonia vitripennis RepID=UPI00015B4B82
Length = 1549
Score = 94.7 bits (234), Expect = 3e-18
Identities = 54/147 (36%), Positives = 82/147 (55%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ K+RP QEI HA++G+G+ HAK+SPVATA YR+LPE+ + +P+ A +
Sbjct: 1404 ICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPEIQIIKPVRGEAAERFKSCFS 1463
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + G V AR +C+ R R +L V L R +HF+F+VES
Sbjct: 1464 PGVIEIVETT---KGKEARVKNARYDSCS--RNVFRHDDLKDCVQLGRVPDHFIFTVESV 1518
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P LF +A+ VL KC++ ++ L
Sbjct: 1519 GALPSSVLFIEAVKVLKKKCKIFMEEL 1545
[154][TOP]
>UniRef100_B0CTH8 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82
RepID=B0CTH8_LACBS
Length = 353
Score = 94.7 bits (234), Expect = 3e-18
Identities = 52/146 (35%), Positives = 81/146 (55%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
LAKLRPGQ++ +E HA++GVG+ HAK+ PVATA YR+LP + +++P+
Sbjct: 194 LAKLRPGQDVHVELHAMKGVGKDHAKYCPVATASYRLLPHIKIKKPIPPHLGEKFQKCFS 253
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ D V R T+ RE +R PE +V+L+R R+ F+F+VES
Sbjct: 254 PGVIKIDPRTKEVSVDEHNV-----RKDTVSREVLRHPEFKDSVELSRVRDFFLFNVESE 308
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDA 439
G P + +A+ V+ K + + A
Sbjct: 309 GAYSPERMLTEAIKVMREKLKKIRQA 334
[155][TOP]
>UniRef100_B8AHP1 Putative uncharacterized protein n=1 Tax=Oryza sativa Indica Group
RepID=B8AHP1_ORYSI
Length = 332
Score = 94.4 bits (233), Expect = 4e-18
Identities = 52/147 (35%), Positives = 72/147 (48%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+L PGQ I +E H ++G+G+VHAKWSPVATA+YRM PEV R+ + A LV CP
Sbjct: 228 IARLGPGQAIVLEVHGVKGMGKVHAKWSPVATAWYRMFPEVVFRKEIKGDNAEKLVKKCP 287
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NVFD+ED+ ++ES+
Sbjct: 288 VNVFDIEDLGN-------------------------------------------VTIEST 304
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G PP LF +A+ +L KC+ V+ L
Sbjct: 305 GGLPPEALFTEAVRILEEKCERVISEL 331
[156][TOP]
>UniRef100_B4N0H9 GK24584 n=1 Tax=Drosophila willistoni RepID=B4N0H9_DROWI
Length = 332
Score = 94.4 bits (233), Expect = 4e-18
Identities = 53/147 (36%), Positives = 83/147 (56%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPG E+D+ A++G+G+ HAK+SPVATA+YR+LP + L R ++ +A L +
Sbjct: 191 IAQLRPGHEMDLRLIAVKGLGKDHAKFSPVATAYYRLLPLIKLNREVSGKDAYLLQSCFS 250
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V ++ + V R + R R LA AV L R R+H++F+VES
Sbjct: 251 PGVIGID--------ENENAYVKDARYDSGSRNVYRYSHLADAVTLARVRDHYIFTVESV 302
Query: 362 GVRPPVDLFRDALDVLVAKCQVVLDAL 442
G P +F +A+ VL KC+ +D +
Sbjct: 303 GALKPEVIFIEAVKVLKKKCRSFIDEI 329
[157][TOP]
>UniRef100_Q8IHT3 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
falciparum 3D7 RepID=Q8IHT3_PLAF7
Length = 333
Score = 94.0 bits (232), Expect = 5e-18
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 2/149 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL--RRPLASAEASTLVAA 175
+ K+ GQEI++ +G+G+ HAKWSPV TA Y+M P + L+ E LV
Sbjct: 189 ITKISSGQEIELICFLQKGIGKTHAKWSPVCTAVYKMYPHFSFNTNEQLSYEEKKDLVNI 248
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP VFD+E D + V P +C+ CR CI + + + + HF+F++E
Sbjct: 249 CPQKVFDIE--------DSQQIFVKNPLSCSTCRVCIE--KYPKKISFQKEKNHFIFTIE 298
Query: 356 SSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
S+G D+F+ AL +L K V +AL
Sbjct: 299 STGCFSAADIFKKALFILRQKVINVKEAL 327
[158][TOP]
>UniRef100_Q4YX04 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium berghei
RepID=Q4YX04_PLABE
Length = 334
Score = 92.0 bits (227), Expect = 2e-17
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLP--EVTLRRPLASAEASTLVAA 175
+ KL GQEI++ +G+G+ HAKWSPV TA Y+M P + + + E +++
Sbjct: 192 ITKLGNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPTFDFDVHEKFTNYEKKDILSI 251
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP NVFD+E+ + P C+ CR CI + + +++ HF+F+VE
Sbjct: 252 CPKNVFDIEESG--------NLVAKNPLDCSSCRACIE--KYPQKISFQKKKNHFIFTVE 301
Query: 356 SSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
S+G ++F+ AL++L K V + L
Sbjct: 302 STGCFSSANIFKKALNILKEKVMNVKEML 330
[159][TOP]
>UniRef100_Q4N473 DNA-directed RNA polymerase I, putative n=1 Tax=Theileria parva
RepID=Q4N473_THEPA
Length = 303
Score = 90.5 bits (223), Expect = 5e-17
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLP--EVTLRRPLASAEASTLVAA 175
+ KL PGQEID+ + +G+G+VH+KWSPV+TA Y+ +P E + L + E L
Sbjct: 163 ITKLAPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIEFSTEHKLTANEKKMLPKI 222
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP NVF G+ V++ P CT CR C+ L + +++ H +FS+E
Sbjct: 223 CPMNVFSFSK------GE---VNIENPLNCTSCRRCLEL--YPKKIIISKLTNHIIFSIE 271
Query: 356 SSGVRPPVDLFRDALDVLVAK 418
SSG +L A+++L K
Sbjct: 272 SSGSVSSYNLLLKAVEILKNK 292
[160][TOP]
>UniRef100_B3L5N8 DNA-diDNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium
knowlesi strain H RepID=B3L5N8_PLAKH
Length = 333
Score = 90.5 bits (223), Expect = 5e-17
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR--RPLASAEASTLVAA 175
+ KL GQEI++ +G+G+ HAKWSPV TA Y+M P + E + LV
Sbjct: 189 ITKLANGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPSFSFNTCENFTKEEKNDLVNI 248
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP NVFD+E D + P C+ CR CI + + + + HF+F++E
Sbjct: 249 CPRNVFDVE--------DSDTLVAKNPLNCSSCRVCIE--KYPKKISFEKVKNHFIFTIE 298
Query: 356 SSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
S+G D+FR AL +L K V + L
Sbjct: 299 STGCFSSADIFRKALLILKDKVVSVKEVL 327
[161][TOP]
>UniRef100_Q5JTE4 Polymerase (RNA) I polypeptide C, 30kDa n=1 Tax=Homo sapiens
RepID=Q5JTE4_HUMAN
Length = 314
Score = 90.5 bits (223), Expect = 5e-17
Identities = 48/118 (40%), Positives = 69/118 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
V ++++V G+ VA PR T RE R +L V L R R+H++ E
Sbjct: 259 PGVIEVQEVQGKK-----VARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYICEYE 311
[162][TOP]
>UniRef100_A5K591 DNA-directed RNA polymerase I, putative n=1 Tax=Plasmodium vivax
RepID=A5K591_PLAVI
Length = 333
Score = 90.1 bits (222), Expect = 7e-17
Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR--RPLASAEASTLVAA 175
+ KL GQEI++ +G+G+ HAKWSPV TA Y+M P + E LV
Sbjct: 189 ITKLSNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPAFSFNTCEKFTQEEKKDLVNI 248
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
CP NVFD+E D + P C+ CR CI + + + + HF+F++E
Sbjct: 249 CPKNVFDVE--------DSDTLVAKNPLNCSSCRVCIE--KYPKKISFEKVKNHFIFTIE 298
Query: 356 SSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
S+G D+FR AL +L K V + L
Sbjct: 299 STGCFSSADIFRKALLILKDKVVSVKEVL 327
[163][TOP]
>UniRef100_O15160-2 Isoform 2 of DNA-directed RNA polymerases I and III subunit RPAC1
n=1 Tax=Homo sapiens RepID=O15160-2
Length = 342
Score = 89.7 bits (221), Expect = 9e-17
Identities = 47/114 (41%), Positives = 68/114 (59%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFV 343
V ++++V G+ VA PR T RE R +L V L R R+H++
Sbjct: 259 PGVIEVQEVQGKK-----VARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYI 307
[164][TOP]
>UniRef100_A7TPZ5 Putative uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora
DSM 70294 RepID=A7TPZ5_VANPO
Length = 320
Score = 89.4 bits (220), Expect = 1e-16
Identities = 51/141 (36%), Positives = 74/141 (52%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI + AH I G+G HAK+SPV TA YR++P++ + + A P
Sbjct: 179 IAKLRPGQEISLRAHCILGIGADHAKFSPVCTASYRLMPKIIITEKIKGESAKRFQKCFP 238
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V D+ + D V AR TM RE +R E V L R R HF+F++E+
Sbjct: 239 PGVIDINE------NDEAYVKDARKD--TMTREVLRHEEFQDKVKLDRVRNHFIFNIETV 290
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G ++F ++ +L K +
Sbjct: 291 GAMSAEEIFLKSVKILKNKAE 311
[165][TOP]
>UniRef100_Q4DRD4 DNA-directed RNA polymerase, alpha subunit, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DRD4_TRYCR
Length = 393
Score = 88.2 bits (217), Expect = 3e-16
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL PGQ + + A A++G+G VHAKW+PV+ FY + + LR P+ A+ L CP
Sbjct: 235 LTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICP 294
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR---LPELAGAVDLTRRREHFVFSV 352
VF + + VA CT+CREC+R PE+A + + + + F++
Sbjct: 295 VGVFGVNEEGES--------EVAEVENCTLCRECLRRDVYPEIADKIVVEKDKTRMRFTI 346
Query: 353 ESSGVRPPVDLFRDAL 400
ES G +FR AL
Sbjct: 347 ESIGQLHASQIFRYAL 362
[166][TOP]
>UniRef100_Q4DDL2 DNA-directed RNA polymerase, alpha subunit, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DDL2_TRYCR
Length = 393
Score = 88.2 bits (217), Expect = 3e-16
Identities = 48/136 (35%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL PGQ + + A A++G+G VHAKW+PV+ FY + + LR P+ A+ L CP
Sbjct: 235 LTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLREPIRGDCATKLQRICP 294
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR---LPELAGAVDLTRRREHFVFSV 352
VF + + VA CT+CREC+R PE+A + + + + F++
Sbjct: 295 VGVFGVNEEGES--------EVAEVENCTLCRECLRRDMYPEIADKIVVEKDKTRMRFTI 346
Query: 353 ESSGVRPPVDLFRDAL 400
ES G +FR AL
Sbjct: 347 ESIGQLHASQIFRYAL 362
[167][TOP]
>UniRef100_C1EBY2 Dna-directed RNA polymerase II polypeptide a n=1 Tax=Micromonas sp.
RCC299 RepID=C1EBY2_9CHLO
Length = 331
Score = 86.7 bits (213), Expect = 7e-16
Identities = 56/154 (36%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR QEI++ A +GVGR HAKW PVATA YR PE+T+ L + E V
Sbjct: 172 ILKLRKNQEINMRCVARKGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEEEKIKFV 231
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE---LAGAVDLTRRREHF 340
+ P VF D + V V P + T EC++ E G VD+ + + F
Sbjct: 232 ESSPTPVFRYNDQTRK-------VEVNMPESYTYDGECLKWAEDMGKPGLVDIRAKEDTF 284
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+F+VES+G PP + +AL VL K ++ L
Sbjct: 285 LFTVESTGALPPETIVLNALKVLDTKLEMTKSEL 318
[168][TOP]
>UniRef100_A8P6Y5 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Brugia malayi RepID=A8P6Y5_BRUMA
Length = 339
Score = 86.7 bits (213), Expect = 7e-16
Identities = 46/136 (33%), Positives = 79/136 (58%)
Frame = +2
Query: 23 QEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANVFDLE 202
Q + H ++G+GR HAK+SPVATA YR+LP++ L++ + A+A + ++ V +++
Sbjct: 200 QSTSLPCHCLKGLGRDHAKFSPVATASYRLLPQIVLKKKFSGADARRVKSSFSEGVIEID 259
Query: 203 DVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVD 382
DG V R+ T R +R +LA ++L+R ++HF+FSVES+G +
Sbjct: 260 -------ADGVAF-VKDARSDTCSRNILRYEDLAEYIELSRIKDHFIFSVESTGALRSAE 311
Query: 383 LFRDALDVLVAKCQVV 430
L +A V+ KC+ +
Sbjct: 312 LVVEACKVMEEKCRTL 327
[169][TOP]
>UniRef100_Q7PPN8 AGAP008771-PA (Fragment) n=1 Tax=Anopheles gambiae
RepID=Q7PPN8_ANOGA
Length = 261
Score = 84.7 bits (208), Expect = 3e-15
Identities = 51/139 (36%), Positives = 71/139 (51%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
++K+RPG E DI+ A++GVG+ HAK+SPVAT YR+LP++ L RP +A +C
Sbjct: 156 ISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNRPAYVKDAR--YDSCS 213
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NV+ R P+LA AV + R R HF+F+VES
Sbjct: 214 RNVY-------------------------------RYPQLADAVTIARVRNHFIFTVESL 242
Query: 362 GVRPPVDLFRDALDVLVAK 418
G P +F +A VL K
Sbjct: 243 GALKPEVIFVEAAKVLKKK 261
[170][TOP]
>UniRef100_Q2HPH1 RNA polymerase subunit I (Fragment) n=1 Tax=Bos taurus
RepID=Q2HPH1_BOVIN
Length = 250
Score = 83.2 bits (204), Expect = 8e-15
Identities = 45/110 (40%), Positives = 64/110 (58%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 146 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 205
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRR 331
V +++++ G+ VA PR T RE R +L V L R R
Sbjct: 206 PGVIEVQEIQGKK-----VARVANPRLDTFSREVFRNEKLKKVVRLARVR 250
[171][TOP]
>UniRef100_C5LCN7 Conjugation stage-specific protein, putative n=1 Tax=Perkinsus
marinus ATCC 50983 RepID=C5LCN7_9ALVE
Length = 336
Score = 83.2 bits (204), Expect = 8e-15
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR-----PLASAEASTL 166
+AKLR Q++ + A +GVG++HAKW+P T R P +T+ R L+ AE +
Sbjct: 162 IAKLRRNQQLTMHMEARKGVGKMHAKWNPTGTVAIRYEPVITIDRAIEYEKLSVAERKAI 221
Query: 167 VAACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP----ELAGAVDLTRRRE 334
V +CP V DL D A R + V R C C EC+ + G + + +R +
Sbjct: 222 VRSCPKRVLDL-DAADR-------IQVVRKDLCDFCDECVTKANYDFKAKGMITVKQRTD 273
Query: 335 HFVFSVESSGVRPPVDLFRDALDVLVAK 418
F+VES+G RPP D+ A+ V K
Sbjct: 274 VVHFTVESTGARPPEDIVMAAIKVFKEK 301
[172][TOP]
>UniRef100_UPI00017936CF PREDICTED: similar to DNA-directed RNA polymerase n=1
Tax=Acyrthosiphon pisum RepID=UPI00017936CF
Length = 325
Score = 82.4 bits (202), Expect = 1e-14
Identities = 46/139 (33%), Positives = 75/139 (53%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQEI+++ A++G+ + HAK+ V TA+YRM+P + L + +A L + P
Sbjct: 178 IAKLRPGQEIELKMFAVKGIPKDHAKFQSVCTAWYRMMPNIKLLDEIKGNDAVLLQSCFP 237
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V L+ V G V R R R + + L++ ++HF+F++ES
Sbjct: 238 KGVIGLKSVKG-----VLIAFVEDSRKDNSSRNVFRYKQFDNKILLSKIQDHFIFTIESV 292
Query: 362 GVRPPVDLFRDALDVLVAK 418
G P +F +AL++L K
Sbjct: 293 GAMDPSLIFLEALNILTRK 311
[173][TOP]
>UniRef100_B6KGB1 DNA-directed RNA polymerase II, putative n=2 Tax=Toxoplasma gondii
RepID=B6KGB1_TOXGO
Length = 484
Score = 82.0 bits (201), Expect = 2e-14
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPL---ASAEASTLVA 172
+ KLR Q +++ A +G+G+VHAKWSPVATA Y+ PE+ L A AE +A
Sbjct: 302 IVKLRKNQSVNMRMTATKGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIA 361
Query: 173 A-CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCREC-IRLPELA--GAVDLTRRREHF 340
A CP VF D GG + V C C +C ++ EL V + F
Sbjct: 362 ASCPREVFSFIDDTATGGTG--VLRVENKMNCIFCDQCKVKAQELGFRRLVRVEPNERKF 419
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
F+VES+GV P + A D+L+ K
Sbjct: 420 HFTVESTGVMPAEQIVEMAFDILLNK 445
[174][TOP]
>UniRef100_B9PNQ8 DNA-directed RNA polymerase II, putative n=1 Tax=Toxoplasma gondii
GT1 RepID=B9PNQ8_TOXGO
Length = 484
Score = 81.6 bits (200), Expect = 2e-14
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPL---ASAEASTLVA 172
+ KLR Q +++ A +G+G+VHAKWSPVATA Y+ PE+ L A AE +A
Sbjct: 302 IVKLRKNQSVNMRMTATKGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIA 361
Query: 173 A-CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCREC-IRLPELA--GAVDLTRRREHF 340
A CP VF D GG + V C C +C ++ EL V + F
Sbjct: 362 ASCPREVFSFIDDTATGGTG--VLRVENKMNCIYCDQCKVKAQELGFRRLVRVEPNERKF 419
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
F+VES+GV P + A D+L+ K
Sbjct: 420 HFTVESTGVMPAEQIVEMAFDILLNK 445
[175][TOP]
>UniRef100_C4V751 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01
RepID=C4V751_NOSCE
Length = 293
Score = 81.6 bits (200), Expect = 2e-14
Identities = 53/139 (38%), Positives = 72/139 (51%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKL P Q + IE A + VGRVHAKWSPV TA YR++P + + EA L
Sbjct: 147 IAKLAPKQALIIEMVACKNVGRVHAKWSPVCTAAYRLMPIIKI-EDFYDEEAEKLQKCFS 205
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
V L G+ + V+ PR T+ RE R E V L R+ +HF+F+VES
Sbjct: 206 PGVISLVK-----EGESYKAIVSEPRKDTVSREVFRHKEFENKVFLGRKNDHFIFTVESL 260
Query: 362 GVRPPVDLFRDALDVLVAK 418
V P+ L + AL ++ K
Sbjct: 261 -VLDPIYLVKKALQIINKK 278
[176][TOP]
>UniRef100_Q39212 DNA-directed RNA polymerase II subunit RPB3-B n=2 Tax=Arabidopsis
thaliana RepID=RPB3B_ARATH
Length = 319
Score = 81.6 bits (200), Expect = 2e-14
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----RPLASAEASTLV 169
+AKLR GQE+ ++A A +G+G+ HAKWSP AT Y P++ + L E L+
Sbjct: 154 IAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLI 213
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF ++ V G+ V V P A T E I+ E G +++ + + F
Sbjct: 214 ESSPTKVFGIDPVTGQ-------VVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSF 266
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
VF+VES+G L +A+D+L K +
Sbjct: 267 VFTVESTGALKASQLVLNAIDILKQKLDAI 296
[177][TOP]
>UniRef100_A8B9C8 DNA-directed RNA polymerase subunit D n=1 Tax=Giardia lamblia ATCC
50803 RepID=A8B9C8_GIALA
Length = 350
Score = 80.5 bits (197), Expect = 5e-14
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 14/161 (8%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVT------LRRPLASAEAST 163
LAKL PGQ I E + +G+GR+HAK+ PV TA+Y+M ++ L+ P + +
Sbjct: 184 LAKLAPGQRIFCEIYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKDALLQHPEVNGDVDK 243
Query: 164 LVA----ACPANVFDLEDVAGRGGGDGFGV-SVARPRACTMCRECIRL---PELAGAVDL 319
LV CP NVF DV + + F V R ACT+CRECI + + L
Sbjct: 244 LVTKLHKVCPVNVF--ADVTRQLDIEDFSVHHPDRTEACTLCRECIAAFTDEQNQCGIRL 301
Query: 320 TRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+ H VF++ES D++ +AL V+ K ++ +L
Sbjct: 302 ELVKTHLVFTIESCSWYRARDIYLEALTVMQQKAALLKSSL 342
[178][TOP]
>UniRef100_Q54DH7 DNA-directed RNA polymerase II subunit rpb3 n=1 Tax=Dictyostelium
discoideum RepID=RPB3_DICDI
Length = 302
Score = 79.0 bits (193), Expect = 2e-13
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR----PLASAEASTLV 169
+ KLR GQEI + A A +GVG+ HAKWSP A Y+ P + L + L + V
Sbjct: 149 IVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWV 208
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLT---RRREHF 340
+CP V+ V++ P C C EC + E G DL ++++ F
Sbjct: 209 GSCPTKVYSYSPHQSTQ-----QVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKF 263
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
+F+VESSG P D+ A+ ++ K
Sbjct: 264 IFTVESSGALKPEDIVLYAIQIIKRK 289
[179][TOP]
>UniRef100_A9SHD1 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SHD1_PHYPA
Length = 324
Score = 78.6 bits (192), Expect = 2e-13
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV----TLRRPLASAEASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT ++ PE+ L L E +
Sbjct: 157 IVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWI 216
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF+L+ V+ + V V P A T E ++ E G V++ + + F
Sbjct: 217 DSSPTKVFELDPVSQQ-------VVVVDPEAYTYDEEVLKKAEAMGKPGLVEIYSKEDSF 269
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G +F +A+++L +K V
Sbjct: 270 IFTVESTGAIKASQMFLNAIEILKSKLDAV 299
[180][TOP]
>UniRef100_C1MVZ5 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545
RepID=C1MVZ5_9CHLO
Length = 333
Score = 78.2 bits (191), Expect = 3e-13
Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 7/149 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQ+I++ A +GVGR HAKW PVATA YR PE+T+ L + E V
Sbjct: 171 IVKLRRGQQINMRCVARKGVGRDHAKWQPVATATYRFEPEITINEELMATLTEEEKMAFV 230
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE---LAGAVDLTRRREHF 340
+ P +F ++ R D + + R+ EC++ E G VD+ + + F
Sbjct: 231 ESSPTALFRYDEATRRVVVD----APDQARSYGYDGECLKKAEELGKPGLVDIRAKEDAF 286
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQV 427
F+VES+G P ++ +AL VL K +V
Sbjct: 287 HFTVESTGALRPEEIVVNALKVLERKMEV 315
[181][TOP]
>UniRef100_Q4UFV7 DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative n=1 Tax=Theileria annulata RepID=Q4UFV7_THEAN
Length = 329
Score = 78.2 bits (191), Expect = 3e-13
Identities = 50/146 (34%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----------RPLASA 151
+ KL PGQEID+ + +G+G+VH+KWSPV+TA Y+ +P++ L +
Sbjct: 181 ITKLGPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMPKIVYNVDILLEFSADHKLTAT 240
Query: 152 EASTLVAACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRL-PELAGAVDLTRR 328
E L CP NVF G+ V++ P CT CR C+ L P+ LT
Sbjct: 241 EKKNLPKICPMNVFSYSK------GE---VNIENPLNCTSCRRCLELYPKKIIISKLTNH 291
Query: 329 -------REHFVFSVESSGVRPPVDL 385
HF S+ESSG DL
Sbjct: 292 IICTFQYFNHFSVSIESSGSVTSYDL 317
[182][TOP]
>UniRef100_O28002 DNA-directed RNA polymerase subunit D n=1 Tax=Archaeoglobus
fulgidus RepID=RPOD_ARCFU
Length = 264
Score = 76.6 bits (187), Expect = 8e-13
Identities = 45/139 (32%), Positives = 75/139 (53%)
Frame = +2
Query: 8 KLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPAN 187
+L GQ++ +EA A G GR HAK+ PV+ Y+++PE+ + + ACP N
Sbjct: 129 ELFEGQQLMLEAVARLGTGREHAKFQPVSVCVYKIIPEIVVNENCNG--CGDCIEACPRN 186
Query: 188 VFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGV 367
VF+ DG V V AC+MC EC+ + E+ A+ + +F+F+VE +G
Sbjct: 187 VFE---------KDGDKVRVKNVMACSMCGECVEVCEM-NAISV-NETNNFLFTVEGTGA 235
Query: 368 RPPVDLFRDALDVLVAKCQ 424
P ++ + AL++L +K +
Sbjct: 236 LPVREVMKKALEILRSKAE 254
[183][TOP]
>UniRef100_B9HS44 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9HS44_POPTR
Length = 346
Score = 76.3 bits (186), Expect = 1e-12
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV----TLRRPLASAEASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + PE+ L L E + +
Sbjct: 158 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWI 217
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VFD++ V + V V P A T E I+ E G +D+ + + F
Sbjct: 218 ESSPTKVFDIDKVTQQ-------VVVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSF 270
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +A+++L K V
Sbjct: 271 IFTVESTGAVKASQLVLNAIEILKQKLDAV 300
[184][TOP]
>UniRef100_UPI00005A26F4 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 2 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F4
Length = 281
Score = 75.9 bits (185), Expect = 1e-12
Identities = 35/75 (46%), Positives = 51/75 (68%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+A+LRPGQEID+ H ++G+G+ HAK+SPVATA YR+LP++TL P+ A L
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 182 ANVFDLEDVAGRGGG 226
V ++++V GR G
Sbjct: 259 PGVIEVQEVQGRTFG 273
[185][TOP]
>UniRef100_C6LSX9 DNA-directed RNA polymerase subunit D n=1 Tax=Giardia intestinalis
ATCC 50581 RepID=C6LSX9_GIALA
Length = 350
Score = 75.5 bits (184), Expect = 2e-12
Identities = 58/172 (33%), Positives = 80/172 (46%), Gaps = 25/172 (14%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVT------LRRPLASAEAST 163
LAKL PGQ I E + +GVG HAK+ PV TA+Y+M +V+ L+ P A
Sbjct: 184 LAKLAPGQRIFCEIYCHKGVGHTHAKFQPVGTAWYKMKTQVSLDKDALLQHPEIGGNAGK 243
Query: 164 LV----AACPANVF-------DLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGA 310
LV CP VF D+ED + R R ACT+CRECI AG
Sbjct: 244 LVEKLHKVCPVGVFAGVDRQLDIEDFSTR--------HPERVEACTLCRECI-----AGF 290
Query: 311 VD--------LTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
D + + H VF++ES D++ +AL V+ K ++ +L
Sbjct: 291 TDEQSQCGVRIELIKTHLVFTIESCSWYRARDIYLEALTVMQQKAVLLKSSL 342
[186][TOP]
>UniRef100_A1RWW0 DNA-directed RNA polymerase, subunit D n=1 Tax=Thermofilum pendens
Hrk 5 RepID=A1RWW0_THEPD
Length = 283
Score = 75.1 bits (183), Expect = 2e-12
Identities = 52/146 (35%), Positives = 70/146 (47%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV-TLRRPLASAEASTLVAAC 178
+ KL GQ+I + A A G GR HAKW PV Y+ P V LR L EA +++ C
Sbjct: 131 ILKLGKGQKISLTAIARMGTGRQHAKWQPVGPVGYKYKPVVRILREDLPEDEALKIISTC 190
Query: 179 PANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
P VF G DG ++V C++CREC + G V++ + + +VES
Sbjct: 191 PRRVF--------GYVDG-KLTVINEMQCSLCRECEE--KFPGIVEVDGDPSNIILTVES 239
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLD 436
G PP L A DVL K L+
Sbjct: 240 IGCLPPEKLLAVAADVLSKKLDNFLE 265
[187][TOP]
>UniRef100_Q8LAJ1 DNA-directed RNA polymerase II, third largest subunit n=1
Tax=Arabidopsis thaliana RepID=Q8LAJ1_ARATH
Length = 319
Score = 74.7 bits (182), Expect = 3e-12
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR----PLASAEASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + P++ + L+ E L+
Sbjct: 154 IVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLI 213
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF ++ V + V V P A T E I+ E G ++++ + + F
Sbjct: 214 ESSPTKVFGMDPVTRQ-------VVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSF 266
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +A+D+L K V
Sbjct: 267 IFTVESTGAVKASQLVLNAIDLLKQKLDAV 296
[188][TOP]
>UniRef100_Q2MGQ5 RNA polymerase, dimerisation n=1 Tax=Medicago truncatula
RepID=Q2MGQ5_MEDTR
Length = 318
Score = 74.7 bits (182), Expect = 3e-12
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + P++ + L + E V
Sbjct: 153 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWV 212
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VFD++ V + V V P A + E I+ E G +++T +++ F
Sbjct: 213 DSSPTRVFDIDPVTQQ-------VMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSF 265
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +++++L K V
Sbjct: 266 IFTVESTGAVKASQLLLNSIEILKQKLDAV 295
[189][TOP]
>UniRef100_Q39211 DNA-directed RNA polymerase II subunit RPB3-A n=1 Tax=Arabidopsis
thaliana RepID=RPB3A_ARATH
Length = 319
Score = 74.7 bits (182), Expect = 3e-12
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR----PLASAEASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + P++ + L+ E L+
Sbjct: 154 IVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLI 213
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF ++ V + V V P A T E I+ E G ++++ + + F
Sbjct: 214 ESSPTKVFGMDPVTRQ-------VVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSF 266
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +A+D+L K V
Sbjct: 267 IFTVESTGAVKASQLVLNAIDLLKQKLDAV 296
[190][TOP]
>UniRef100_C1BZA1 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
lucius RepID=C1BZA1_ESOLU
Length = 239
Score = 73.9 bits (180), Expect = 5e-12
Identities = 32/52 (61%), Positives = 43/52 (82%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEA 157
LAKLRPGQE+DI H ++G+G+ HAK+SPVATA YR+LPE+TL +P+ E+
Sbjct: 176 LAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKPVEGGES 227
[191][TOP]
>UniRef100_A7P9N6 Chromosome chr3 scaffold_8, whole genome shotgun sequence n=1
Tax=Vitis vinifera RepID=A7P9N6_VITVI
Length = 318
Score = 73.9 bits (180), Expect = 5e-12
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + PE+ + L + E ++ V
Sbjct: 153 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWV 212
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VFD++ + + V VA A T E ++ E G V++ + + F
Sbjct: 213 ESSPTKVFDIDASSQQ-------VVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSF 265
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +A+DVL K V
Sbjct: 266 IFTVESTGAIKASQLVLNAIDVLKQKLDAV 295
[192][TOP]
>UniRef100_A5B429 Putative uncharacterized protein n=1 Tax=Vitis vinifera
RepID=A5B429_VITVI
Length = 318
Score = 73.9 bits (180), Expect = 5e-12
Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + PE+ + L + E ++ V
Sbjct: 153 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWV 212
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VFD++ + + V VA A T E ++ E G V++ + + F
Sbjct: 213 ESSPTKVFDIDASSQQ-------VVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSF 265
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +A+DVL K V
Sbjct: 266 IFTVESTGAIKASQLVLNAIDVLKQKLDAV 295
[193][TOP]
>UniRef100_A2F4R6 RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
n=1 Tax=Trichomonas vaginalis G3 RepID=A2F4R6_TRIVA
Length = 322
Score = 73.6 bits (179), Expect = 7e-12
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRP----LASAEASTLV 169
+ KL PGQ + + A+ +G+GR HAKWSPV + Y + + R + E +V
Sbjct: 170 ITKLAPGQTLRLAAYIRKGIGRNHAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVV 229
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAG---AVDLTRRREHF 340
A+CP + G + VA CT C +CIR E+ G A+ + +R F
Sbjct: 230 ASCPKKCLKM--------GLDDNIQVANFEDCTFCNQCIRTAEVHGHKDAIVIQSKRGLF 281
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
VF+VE+ G P ++ L K
Sbjct: 282 VFNVETIGSLSPENVVTRGFQALTNK 307
[194][TOP]
>UniRef100_Q4N9T5 DNA-directed RNA polymerase II, putative n=1 Tax=Theileria parva
RepID=Q4N9T5_THEPA
Length = 354
Score = 73.2 bits (178), Expect = 9e-12
Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV----TLRRPLASAEASTLV 169
+ KL+ G I+++ A +G+G+ HAKW VA Y+M P +L L+S E + +
Sbjct: 158 IVKLKRGHSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSSLMEQLSSEEKAGIA 216
Query: 170 AACPANVFDLEDVAGRGGG-----------DGFGVSVARPRACTMCRECIRLPELAGAVD 316
A+CP NVF V D G+ V AC C ECI G D
Sbjct: 217 ASCPRNVFKYTGVRSEAPSFLGPSDKTFKLDAAGLHVVDKLACIYCDECINYCRELGHKD 276
Query: 317 LTR---RREHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
L R F F++ES+G PP + AL VL K Q
Sbjct: 277 LIRIQPDESKFHFTIESTGAIPPEKILEIALVVLEKKLQ 315
[195][TOP]
>UniRef100_B9RYB6 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Ricinus
communis RepID=B9RYB6_RICCO
Length = 318
Score = 72.8 bits (177), Expect = 1e-11
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV----TLRRPLASAEASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + P++ L L+ E + V
Sbjct: 153 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWV 212
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE---LAGAVDLTRRREHF 340
+ P VFD++ + V V P A T E I+ E G V++ + + F
Sbjct: 213 ESSPTKVFDIDPNTQQ-------VVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKEDSF 265
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VES+G L +A+++L K V
Sbjct: 266 IFTVESTGAIKASQLVLNAIEILKQKLDAV 295
[196][TOP]
>UniRef100_B8BWN8 RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit (Fragment) n=1 Tax=Thalassiosira pseudonana
CCMP1335 RepID=B8BWN8_THAPS
Length = 297
Score = 72.4 bits (176), Expect = 1e-11
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRP----LASAEASTLV 169
+ KL PGQ + ++A A G+ + HAKW PVA A YR P +T+ L + LV
Sbjct: 151 IVKLGPGQHLKLKAIARMGISKEHAKWCPVAVATYRFWPIITINEEACNMLTLEQKQELV 210
Query: 170 AACPANVFDLEDVAGR--GGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFV 343
ACP + +L+++ G + + ++ T+ + PE V++ + + FV
Sbjct: 211 EACPDRILELDEITGNLVAVENAYEMATFTEDLKTVQNAMKKRPEDDDFVNVVQSTDRFV 270
Query: 344 FSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
FSVES+G DA ++L++ +V+ D L
Sbjct: 271 FSVESTGA-------MDAEEILLSSLRVLKDRL 296
[197][TOP]
>UniRef100_B6TCC3 DNA-directed RNA polymerase II 36 kDa polypeptide A n=1 Tax=Zea
mays RepID=B6TCC3_MAIZE
Length = 328
Score = 72.4 bits (176), Expect = 1e-11
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + P++ + L E +L+
Sbjct: 168 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLI 227
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF+L+ V V A T E I+ E G V++T + + F
Sbjct: 228 ESSPTKVFELDSAN--------QVVVKNAEAYTYDDEVIKHAEAIGKPGLVEITAKEDSF 279
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
VF+VE++G +L +A+ VL K V
Sbjct: 280 VFTVETTGAITAYELIMNAITVLRQKLDAV 309
[198][TOP]
>UniRef100_Q4UFZ3 DNA-directed RNA polymerase ii, putative n=1 Tax=Theileria annulata
RepID=Q4UFZ3_THEAN
Length = 354
Score = 72.4 bits (176), Expect = 1e-11
Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVT----LRRPLASAEASTLV 169
+ KL+ GQ I+++ A +G+G+ HAKW VA Y+M P + L L+S E + +
Sbjct: 158 IVKLKRGQSINMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSALMEQLSSDEKAGIA 216
Query: 170 AACPANVFDLEDVAGRGGG-----------DGFGVSVARPRACTMCRECIRLPELAGAVD 316
A+CP NVF V D G+ V C C ECI G D
Sbjct: 217 ASCPRNVFKYTGVRSENPSFLGHSDKTFKLDAGGLQVVNKLDCIYCDECINYCRELGHKD 276
Query: 317 LTR---RREHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
L R F F++ES+G PP + AL VL K Q
Sbjct: 277 LIRIQPDESKFHFTIESTGSIPPEKILEIALIVLEKKLQ 315
[199][TOP]
>UniRef100_B8D6F8 DNA-directed RNA polymerase subunit D n=1 Tax=Desulfurococcus
kamchatkensis 1221n RepID=B8D6F8_DESK1
Length = 280
Score = 71.6 bits (174), Expect = 2e-11
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 1/148 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-RRPLASAEASTLVAAC 178
+ KL Q I +EA+A G G+ H KWSPV+TA ++ +P +T+ AE S V AC
Sbjct: 134 ILKLIKDQSIRLEAYARLGRGKEHIKWSPVSTAAHKYVPAITIDSEKCKGAECSRCVNAC 193
Query: 179 PANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVES 358
P N+F+ G + V + CT CR C + AV ++ R ++ +E
Sbjct: 194 PKNIFE-------AGNNSVRVKEDKILECTFCRLCENICP-TQAVKVSWRENEYILYLEL 245
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+G ++ +A+++L K +D L
Sbjct: 246 TGALNARNILIEAINILSRKLDAFIDEL 273
[200][TOP]
>UniRef100_A4I451 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
infantum RepID=A4I451_LEIIN
Length = 337
Score = 71.2 bits (173), Expect = 3e-11
Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----RPLASAEASTLV 169
L L Q +D+ + + + HAK+ PVAT R PE+ L + L A+A V
Sbjct: 141 LVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWV 200
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-------RLPELAGAVDLTRR 328
A CP NVF + G+ V V AC CREC RLPE V +
Sbjct: 201 ARCPRNVFRFVERTGQ-------VEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKN 253
Query: 329 RE---HFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+ F F+VES+GV P + + DA+ V+ K Q V + L
Sbjct: 254 KMGYFDFTFTVESTGVLPVLQIVYDAVTVVRRKLQRVSEGL 294
[201][TOP]
>UniRef100_C1BYW4 DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Esox
lucius RepID=C1BYW4_ESOLU
Length = 263
Score = 70.9 bits (172), Expect = 4e-11
Identities = 31/52 (59%), Positives = 42/52 (80%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEA 157
LAKLRPGQE+DI H ++G+G+ HAK+SPVATA YR+LPE+TL + + E+
Sbjct: 200 LAKLRPGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKTVEGGES 251
[202][TOP]
>UniRef100_Q4FY45 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania major
strain Friedlin RepID=Q4FY45_LEIMA
Length = 337
Score = 70.9 bits (172), Expect = 4e-11
Identities = 54/161 (33%), Positives = 74/161 (45%), Gaps = 14/161 (8%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----RPLASAEASTLV 169
L L Q +D+ + + + HAK+ PVAT R PE+ L + L A+A V
Sbjct: 141 LVTLGRSQVLDLHVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWV 200
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-------RLPELAGAVDLTRR 328
A CP NVF + G+ V V AC CREC RLPE V +
Sbjct: 201 ARCPRNVFRFVERTGQ-------VEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKN 253
Query: 329 RE---HFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
+ F F+VES+GV P + + DA+ V+ K Q V + L
Sbjct: 254 KMGYFDFTFTVESTGVLPVLQIVYDAVAVVRKKLQRVSEGL 294
[203][TOP]
>UniRef100_Q4PBM5 Putative uncharacterized protein n=1 Tax=Ustilago maydis
RepID=Q4PBM5_USTMA
Length = 320
Score = 70.9 bits (172), Expect = 4e-11
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+AKLRPGQE+D+E H +G+G+ HAK+SPVATA YR+LP + L +P+ V+ P
Sbjct: 242 IAKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQLLQPIPDESIDKFVSCFP 301
Query: 182 ANVFDLE 202
V ++
Sbjct: 302 PGVIGVQ 308
[204][TOP]
>UniRef100_Q3ECL4 Putative uncharacterized protein At1g60850.3 n=1 Tax=Arabidopsis
thaliana RepID=Q3ECL4_ARATH
Length = 302
Score = 70.5 bits (171), Expect = 6e-11
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV 124
+AKL PGQEI++EAHA++G+G+ HAKWSPV TA+YRM PEV
Sbjct: 234 IAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEV 274
[205][TOP]
>UniRef100_O26144 DNA-directed RNA polymerase subunit D n=1 Tax=Methanothermobacter
thermautotrophicus str. Delta H RepID=RPOD_METTH
Length = 264
Score = 70.1 bits (170), Expect = 7e-11
Identities = 45/144 (31%), Positives = 65/144 (45%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL E+++EA A GVGR HAKW P Y+ P + E + ACP
Sbjct: 127 LVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYKYYPRIEFSED--CDECLECIEACP 184
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
DV G G V + C+MC+ C+R + A+D+ F+F +E+
Sbjct: 185 ------RDVLGEESGKPVVVDLEN---CSMCKSCVRACD-KRAIDVGYEEGKFIFRIETD 234
Query: 362 GVRPPVDLFRDALDVLVAKCQVVL 433
G P D+ A D+L K + V+
Sbjct: 235 GSVDPKDVLLKACDILRDKAEQVI 258
[206][TOP]
>UniRef100_C4PY29 DNA-directed RNA polymerase I, putative n=1 Tax=Schistosoma mansoni
RepID=C4PY29_SCHMA
Length = 490
Score = 69.7 bits (169), Expect = 9e-11
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 3/141 (2%)
Frame = +2
Query: 8 KLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPAN 187
KL G EI+ A++G+GR HAK+SPVA A+Y+ P + L R + +A L + +
Sbjct: 202 KLALGDEIEARCVAVKGIGRDHAKFSPVAAAYYKFHPIIKLLRTIEGEQAIKLQKSFASG 261
Query: 188 VFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELA-GAVDLTRRREHFVFSVE--S 358
V + G+ V R RE +R PE + + H +F+VE +
Sbjct: 262 VIGINSKTGQ-------AFVDNARLDNGSREHMRHPEFRDDVIFVGMDSSHCIFTVETIA 314
Query: 359 SGVRPPVDLFRDALDVLVAKC 421
G RPP L R AL V+++KC
Sbjct: 315 PGSRPPSSLVRCALGVMISKC 335
[207][TOP]
>UniRef100_Q2NFZ6 DNA-directed RNA polymerase subunit D n=1 Tax=Methanosphaera
stadtmanae DSM 3091 RepID=RPOD_METST
Length = 270
Score = 69.7 bits (169), Expect = 9e-11
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ +LR G+E+++EA A G+G HAKW T Y+ P++ + + + V CP
Sbjct: 129 IVRLREGEEVELEAIAELGLGSEHAKWQATTTCGYKYYPKIEIDTEKVN-DLEEYVEECP 187
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL-AGAVDLTRRREHFVFSVES 358
NV +ED + V C+ CR C RL E A+ + ++F +E+
Sbjct: 188 RNVLQIEDDT---------LVVGNIENCSTCRTCQRLSEKDDNAIVVDFEESKYIFKIET 238
Query: 359 SGVRPPVDLFRDALDVLVAKCQVVLD 436
G P D+ A D+L K +++
Sbjct: 239 DGSLKPFDVLTIACDILSEKADNIIN 264
[208][TOP]
>UniRef100_P16925 Conjugation stage-specific protein n=2 Tax=Tetrahymena thermophila
RepID=CNJC_TETTH
Length = 310
Score = 69.7 bits (169), Expect = 9e-11
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 10/149 (6%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLAS---AEASTLVA 172
+ KL GQ+I E A +G+G++H+KW+PV + + + PE+ + + + + LV
Sbjct: 151 IIKLSKGQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQNLDIEQKKALVN 210
Query: 173 ACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-------RLPELAGAVDLTRRR 331
ACP VF + + V C C EC+ + P+L + + ++
Sbjct: 211 ACPTKVFGINPHTNT-------LEVQDHMKCMYCEECVYKCAEDFQKPKL---IKIDHKK 260
Query: 332 EHFVFSVESSGVRPPVDLFRDALDVLVAK 418
+ F F VE++GV PV++ R L K
Sbjct: 261 DKFFFKVETTGVMKPVEVLRRGFSTLRQK 289
[209][TOP]
>UniRef100_Q6YX88 Os09g0110400 protein n=2 Tax=Oryza sativa RepID=Q6YX88_ORYSJ
Length = 330
Score = 68.6 bits (166), Expect = 2e-10
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + PE+ + L E LV
Sbjct: 169 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLV 228
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF+++ + V V A T E I+ + G +++ + + F
Sbjct: 229 ESSPTKVFNIDPNTQQ-------VVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSF 281
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VE++G +L +A+ VL K V
Sbjct: 282 IFTVETTGAITAYELIMNAITVLRQKLDAV 311
[210][TOP]
>UniRef100_C5X7D7 Putative uncharacterized protein Sb02g014460 n=1 Tax=Sorghum
bicolor RepID=C5X7D7_SORBI
Length = 328
Score = 68.2 bits (165), Expect = 3e-10
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KLR GQE+ + A A +G+G+ HAKWSP AT + P++ + L E L+
Sbjct: 168 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERRRLI 227
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL---AGAVDLTRRREHF 340
+ P VF L+ V V A T E I+ E G V++ + + F
Sbjct: 228 ESSPTKVFKLDSAN--------QVVVDNAEAYTYDDEVIKHAEALGKPGLVEINAKEDSF 279
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
+F+VE++G +L +A+ VL K V
Sbjct: 280 IFTVETTGAITAYELIMNAITVLRQKLDAV 309
[211][TOP]
>UniRef100_Q4XZH2 DNA-directed RNA polymerase I, putative (Fragment) n=1
Tax=Plasmodium chabaudi RepID=Q4XZH2_PLACH
Length = 297
Score = 68.2 bits (165), Expect = 3e-10
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVT--LRRPLASAEASTLVAA 175
+ KL GQEI++ +G+G+ HAKWSPV TA Y+M P + + E LV
Sbjct: 192 ITKLGSGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPSFNFDVHEKFTNNEKKDLVNI 251
Query: 176 CPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI 286
CP VFD+E+ + P C+ CR CI
Sbjct: 252 CPKKVFDIEETG--------NLVAKNPLDCSSCRACI 280
[212][TOP]
>UniRef100_C8S812 RNA polymerase insert n=1 Tax=Ferroglobus placidus DSM 10642
RepID=C8S812_FERPL
Length = 262
Score = 68.2 bits (165), Expect = 3e-10
Identities = 45/141 (31%), Positives = 70/141 (49%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ +L GQ++ +EA A G G+ HAK+ PV+ +Y+++P + + V ACP
Sbjct: 125 IVELYEGQQLMLEAVARLGTGKEHAKFQPVSICYYKIIPRIEITEDCNL--CMKCVDACP 182
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
NV D V V C+MCR+C+R+ E A A+ L F+F+VE
Sbjct: 183 RNVLK---------NDNGKVVVENVLECSMCRDCVRVCE-ANAI-LIEETGDFLFTVEGV 231
Query: 362 GVRPPVDLFRDALDVLVAKCQ 424
G P + R AL++L K +
Sbjct: 232 GQLPVRTVMRKALEILKEKAE 252
[213][TOP]
>UniRef100_B7G229 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1
RepID=B7G229_PHATR
Length = 320
Score = 67.4 bits (163), Expect = 5e-10
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----RPLASAEASTLV 169
+ KL PGQ + ++A A G+ + HAKW PVA A YR PE+ + L + LV
Sbjct: 162 IVKLGPGQRLKLKAIARMGISKEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQKQELV 221
Query: 170 AACPANVFDLEDVAG--RGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFV 343
CP + +L++V G R + + + + PE V +T+ ++ F+
Sbjct: 222 DTCPDRILELDEVTGDIRAVDNAWDICTYTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFI 281
Query: 344 FSVESSGVRPPVDLFRDALDVL 409
F+VE++G ++ A+ VL
Sbjct: 282 FNVETTGAMDADEILLSAIRVL 303
[214][TOP]
>UniRef100_B7XIP8 DNA-directed RNA polymerases I, II, and III, subunit 3 n=1
Tax=Enterocytozoon bieneusi H348 RepID=B7XIP8_ENTBH
Length = 282
Score = 67.0 bits (162), Expect = 6e-10
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ KL P I ++ G+G+ H KWSPVA +R+LP + L R +A L AC
Sbjct: 146 ICKLAPKNTISMKLRIAEGIGKTHVKWSPVALCTFRLLPHIKLNRKFTGEDAVRLKNACS 205
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELA-GAVDLTRRREHFVFSVES 358
V ++ + + F V PR TM RE +R E + G+V+L+R H+ F VE
Sbjct: 206 QGVIEIVN------DEAF---VKNPRLETMSREVLR--EFSDGSVELSRVAGHYCFCVEG 254
Query: 359 SGVRPPVDLFRDALDVLVAK 418
+ P+ + + A+ VL K
Sbjct: 255 L-LENPLVILQKAILVLKEK 273
[215][TOP]
>UniRef100_A0DID7 Chromosome undetermined scaffold_51, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0DID7_PARTE
Length = 308
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL----RRPLASAEASTLV 169
+ +L Q + + HA++G G++HAKW+P+ A +R E+ + L+ E ++
Sbjct: 154 ITRLGKNQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIR 213
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE---LAGAVDLTRRREHF 340
+CP NVF ++ + V C C ECIR E + + ++ +
Sbjct: 214 DSCPMNVFAMD--------ANQDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKY 265
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
+F+VES+G D+ + AL VL K
Sbjct: 266 IFTVESAGQLKAADIVQKALIVLRKK 291
[216][TOP]
>UniRef100_A0CLS1 Chromosome undetermined scaffold_204, whole genome shotgun sequence
n=1 Tax=Paramecium tetraurelia RepID=A0CLS1_PARTE
Length = 297
Score = 66.6 bits (161), Expect = 8e-10
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL----RRPLASAEASTLV 169
+ +L Q + + HA++G G++HAKW+P+ A +R E+ + L+ E ++
Sbjct: 143 ITRLGKNQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIR 202
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPE---LAGAVDLTRRREHF 340
+CP NVF ++ + V C C ECIR E + + ++ +
Sbjct: 203 DSCPMNVFAMD--------ANQDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKY 254
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
+F+VES+G D+ + AL VL K
Sbjct: 255 IFTVESAGQLKAADIVQKALIVLRKK 280
[217][TOP]
>UniRef100_Q8SSL9 DNA-DIRECTED RNA POLYMERASE I n=1 Tax=Encephalitozoon cuniculi
RepID=Q8SSL9_ENCCU
Length = 305
Score = 66.6 bits (161), Expect = 8e-10
Identities = 43/141 (30%), Positives = 71/141 (50%)
Frame = +2
Query: 8 KLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPAN 187
+L GQ+I E + VG+VHAKWSPV A YR++P + + + +A L
Sbjct: 162 RLARGQKISAELVCTKNVGKVHAKWSPVCPATYRLMPLIEI-GDIFDEDAYKLQKCFSEG 220
Query: 188 VFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGV 367
V D+ GR V+ PR +M RE +R E + + RR ++F+F++ + +
Sbjct: 221 VIDVRPSDGR-----MKAYVSNPRLDSMSREALRHEEFKDKIFIGRRSDYFLFTINTVFL 275
Query: 368 RPPVDLFRDALDVLVAKCQVV 430
P+ L A+ VL+ K + +
Sbjct: 276 -DPLYLLEKAVSVLIEKSRAL 295
[218][TOP]
>UniRef100_A9SM40 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens
RepID=A9SM40_PHYPA
Length = 385
Score = 65.9 bits (159), Expect = 1e-09
Identities = 55/162 (33%), Positives = 74/162 (45%), Gaps = 23/162 (14%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTL----- 166
+AKL GQEI + A A +G+G +HAKWSPVAT + PE+ + EA TL
Sbjct: 170 IAKLYKGQEITLRALAKKGMGSLHAKWSPVATVTFHHEPEIYINE--EKMEALTLAEKQN 227
Query: 167 ---------------VAACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPEL 301
V A VF L+ + V V P A T +E R E
Sbjct: 228 WVESSLDLPQNQSFPVPATLVKVFKLDPATSK-------VMVVSPGAYT-SQELQRNVEA 279
Query: 302 AGAVDLTR---RREHFVFSVESSGVRPPVDLFRDALDVLVAK 418
AG +L R + F+FSVES+G P + DA+++L K
Sbjct: 280 AGMAELVEIAWRDDSFIFSVESTGAIAPAKICVDAVNILKKK 321
[219][TOP]
>UniRef100_B6AI35 DNA-directed RNA polymerase II subunit RPB3, putative n=1
Tax=Cryptosporidium muris RN66 RepID=B6AI35_9CRYT
Length = 348
Score = 65.9 bits (159), Expect = 1e-09
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRP----LASAEASTLV 169
+AKL PGQ + A +G+G+ HAKW PVATA + ++ + + ++ +V
Sbjct: 150 IAKLGPGQSLTARMTATKGIGKFHAKWIPVATATFTNEADIRINQSSMTNVSLKHRREIV 209
Query: 170 AACPANVFDLE---------DVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVD-- 316
+CP NVF L D + + V C C EC+ G ++
Sbjct: 210 NSCPKNVFGLSASKSEFGMFDKPVEKSTNIPDIEVLNSSDCIFCNECVNTCRNLGYINPP 269
Query: 317 ---LTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQ 424
+ + + F F VES+G P + AL++L K Q
Sbjct: 270 LIRVDTKPDKFHFVVESTGAMPAEQIIEMALEILQEKLQ 308
[220][TOP]
>UniRef100_A7AWB4 DNA-directed RNA polymerase II, putative n=1 Tax=Babesia bovis
RepID=A7AWB4_BABBO
Length = 382
Score = 65.5 bits (158), Expect = 2e-09
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASA----EASTLV 169
+ KL+ GQ + ++ A +G+G+ HAKW VA Y+M P +T+ R +A E + +V
Sbjct: 197 IVKLKRGQCLSLKMTATKGLGKFHAKWM-VANVAYKMEPVITINRQVAEKMNLNEKTQIV 255
Query: 170 AACPANVFDLEDVAGR-GGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTR---RREH 337
+CP VF L + G + + C C EC+ G DL R
Sbjct: 256 QSCPRKVFKLSNPHGAYSTATKAEIVIDNNLNCIYCDECLNQAREMGYRDLIRVQPDETK 315
Query: 338 FVFSVESSGVRPPVDLFRDALDVLVAK 418
F F++ES+G P + LD L K
Sbjct: 316 FHFTIESNGAISPEKILEICLDTLEEK 342
[221][TOP]
>UniRef100_A7SL38 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SL38_NEMVE
Length = 342
Score = 65.1 bits (157), Expect = 2e-09
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Frame = +2
Query: 23 QEIDIEAHAIRGVGRVHAKWSPV--ATAFYRMLPEVTLRRPLASAEASTLVAACPANVFD 196
QE+DI+ HA++GVG+ HAK+SPV +TA YR+LPE+TL +P A L A V
Sbjct: 200 QELDIKMHAVKGVGKDHAKFSPVGKSTASYRLLPEITLLKPCEDELADKLAACFSPGVIK 259
Query: 197 LEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTR----RREHFVFSVESSG 364
++ V + + V + R + + + ++ R + + SVES G
Sbjct: 260 VKTVNEKNHTNDQNVGL---------RSLCNIISVYISENIIRNEFVEKNYTNVSVESIG 310
Query: 365 VRPPVDLFRDALDVLVAKCQVVLDAL 442
P L +A+ VL++KC+ + L
Sbjct: 311 ALRPEVLVCEAIKVLISKCRQFISEL 336
[222][TOP]
>UniRef100_Q4DWU1 DNA-directed RNA polymerase II subunit 3, putative n=1
Tax=Trypanosoma cruzi RepID=Q4DWU1_TRYCR
Length = 363
Score = 64.7 bits (156), Expect = 3e-09
Identities = 50/162 (30%), Positives = 75/162 (46%), Gaps = 15/162 (9%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEAST-----L 166
L L QE+++ + + + HAK+ PVAT R ++ L P A+ T
Sbjct: 166 LLTLGRSQELNLRVVIRKNIAKTHAKFMPVATVAMRYASDIVLN-PDGFAKLDTEHRRQW 224
Query: 167 VAACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIR----LPELAGAVDLTRRRE 334
V CP VF +D G+ V +A P AC CREC+ +LA + R ++
Sbjct: 225 VERCPRQVFRYDDRTGQ-------VLLADPDACIFCRECLLKEPPFNKLAEPLVFVRHKK 277
Query: 335 H------FVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
F F+VES+G P + + DA++VL K + V D L
Sbjct: 278 DKRGYHDFTFTVESTGALPVLQILYDAVEVLRRKLERVRDGL 319
[223][TOP]
>UniRef100_B0EHR6 DNA-directed RNA polymerase subunit D, putative n=1 Tax=Entamoeba
dispar SAW760 RepID=B0EHR6_ENTDI
Length = 283
Score = 64.7 bits (156), Expect = 3e-09
Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR----PLASAEASTLV 169
+ +L P Q I + + +G G+ HAKW+P ++ L ++ + L + T
Sbjct: 133 ITQLGPRQNIHMVCYVKKGTGKFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFC 192
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAG---AVDLTRRREHF 340
CP VFD ++V G V + C C EC G V +T + + F
Sbjct: 193 EQCPQKVFDYQEV-------GEKVFIRGDENCIFCNECTVYARDIGQRNLVTVTPKTDQF 245
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
VF VE +GV PP + L+ + K
Sbjct: 246 VFKVEGTGVYPPKQIIELGLEEMKKK 271
[224][TOP]
>UniRef100_A4HH22 DNA-directed RNA polymerase I-like protein n=1 Tax=Leishmania
braziliensis RepID=A4HH22_LEIBR
Length = 337
Score = 64.7 bits (156), Expect = 3e-09
Identities = 53/164 (32%), Positives = 72/164 (43%), Gaps = 17/164 (10%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----RPLASAEASTLV 169
L L Q +D+ + + + HAK+ PVAT R E+ L + L A V
Sbjct: 141 LVTLGRSQVLDLNVLIRKNIAKTHAKFMPVATVAMRYAAEILLNPNGFQALGKTNAREWV 200
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-------RLPELAGAVDLTRR 328
A CP NVF + G+ V V AC CREC +LPE + R+
Sbjct: 201 ARCPRNVFRFVERTGQ-------VEVQDEGACIFCRECTSQEPPFDKLPE---PLVFVRQ 250
Query: 329 REH------FVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDAL 442
R+ F F VES+GV P + + DA+ VL K Q V + L
Sbjct: 251 RKSKMGYFDFTFVVESTGVLPVLQIVYDAVAVLRKKLQRVSEGL 294
[225][TOP]
>UniRef100_A7IAH5 DNA-directed RNA polymerase n=1 Tax=Candidatus Methanoregula boonei
6A8 RepID=A7IAH5_METB6
Length = 276
Score = 63.9 bits (154), Expect = 5e-09
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ KL GQ++ IEA A+ G+VHAKW P Y+ P +T+ P A V CP
Sbjct: 125 IVKLIKGQKLVIEARAVLNKGKVHAKWQPTLVCGYKNYPVITI-SPTCDA-CGMCVDECP 182
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAG-----AVDLTRRREHFVF 346
+ L+ G V R C+MC+ C R +G A+ ++ + ++F
Sbjct: 183 RTILALK-------GKKVEVIEGRLPDCSMCKLCERACLASGIGEEPAIRISAEPDRYIF 235
Query: 347 SVESSGVRPPVDLFRDALDVLVAKCQ 424
SVES G P ++ AL + A+ +
Sbjct: 236 SVESDGSLPVKEIMVQALGFVKAQAE 261
[226][TOP]
>UniRef100_C4M554 DNA-directed RNA polymerase II subunit, putative n=1 Tax=Entamoeba
histolytica HM-1:IMSS RepID=C4M554_ENTHI
Length = 283
Score = 63.5 bits (153), Expect = 7e-09
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR----PLASAEASTLV 169
+ +L P Q I + + +G G+ HAKW+P ++ L ++ + L + T
Sbjct: 133 ITQLGPRQNIHMVCYVKKGTGKFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFC 192
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAG---AVDLTRRREHF 340
CP +FD ++V G V + C C EC G V +T + + F
Sbjct: 193 EQCPQKLFDYQEV-------GEKVFIRGEENCIFCNECTVYARDIGQRNLVTVTPKTDQF 245
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAK 418
VF VE +GV PP + L+ + K
Sbjct: 246 VFKVEGTGVYPPKQIIELGLEEMKKK 271
[227][TOP]
>UniRef100_Q5CSH3 RNA polymerase II B3 subunit n=1 Tax=Cryptosporidium parvum Iowa II
RepID=Q5CSH3_CRYPV
Length = 355
Score = 62.0 bits (149), Expect = 2e-08
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 24/163 (14%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLAS----AEASTLV 169
+AKL PGQ I + A +G+G+ HAKW PV+ A + +V + L+S + +V
Sbjct: 151 IAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIV 210
Query: 170 AACPANVFDLEDVAGR-----GGGDGFG----------VSVARPRACTMCRECIRLPELA 304
CP +VF L + + + V ++C C EC+ L +
Sbjct: 211 NCCPKDVFALGGSTSKTEYALNKNSAYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNY 270
Query: 305 GAVD-----LTRRREHFVFSVESSGVRPPVDLFRDALDVLVAK 418
G ++ + + + F F VES+G P + A ++L K
Sbjct: 271 GYINPVLIRVDTKPDKFHFLVESTGALPVESIVELAFEILQEK 313
[228][TOP]
>UniRef100_Q5CNH1 Conjugation stage-specific protein n=1 Tax=Cryptosporidium hominis
RepID=Q5CNH1_CRYHO
Length = 355
Score = 61.6 bits (148), Expect = 3e-08
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 27/166 (16%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLAS----AEASTLV 169
+AKL PGQ I + A +G+G+ HAKW PV+ A + +V + L+S + +V
Sbjct: 151 IAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIV 210
Query: 170 AACPANVFDLEDVAGRGGGDGFGVS------------------VARPRACTMCRECIRLP 295
CP +VF L G + ++ V ++C C EC+ L
Sbjct: 211 NCCPKDVFAL---GGNTSKTEYALNKNSTYSTKTKTEELPDLEVVSSKSCIFCNECVNLT 267
Query: 296 ELAGAVD-----LTRRREHFVFSVESSGVRPPVDLFRDALDVLVAK 418
+ G ++ + + + F F VES+G P + A ++L K
Sbjct: 268 KNYGYINPALIRVDTKPDKFHFLVESTGALPVESIVELAFEILQEK 313
[229][TOP]
>UniRef100_UPI00005A26F6 PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 4 n=1 Tax=Canis
lupus familiaris RepID=UPI00005A26F6
Length = 296
Score = 61.2 bits (147), Expect = 3e-08
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +2
Query: 71 HAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAAC-PANVFDLEDVAGRGGGDGFGVSV 247
H W P+ + PE T+R L+A P DL +G G V
Sbjct: 172 HMTWVPLGNQA-DLFPEGTIR----PVHDDILIAQLRPGQEIDLLMHCVKGIGKKVA-RV 225
Query: 248 ARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQV 427
A PR T RE R +L V L R R+H++FSVES+GV PP L +A+ VL+ KC+
Sbjct: 226 ANPRLDTFSREVFRKEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRR 285
Query: 428 VLDAL 442
LD L
Sbjct: 286 FLDEL 290
[230][TOP]
>UniRef100_A8BBI3 DNA-directed RNA polymerase RPB3 n=2 Tax=Giardia intestinalis
RepID=A8BBI3_GIALA
Length = 326
Score = 61.2 bits (147), Expect = 3e-08
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-----RRPLASAE-AST 163
+ KL PG+ I+ +A + G++HAKW P A R L + L R P + A T
Sbjct: 148 ILKLAPGESINALLYARKDRGKIHAKWCPAACVVLRPLARIILCDEFERLPQQHNDVART 207
Query: 164 LVA-ACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVD-------- 316
++ CP NVF +E+ V V +C C +C +P G
Sbjct: 208 YISETCPRNVFTIENRR---------VVVKDSNSCIFCNDCFNIPISLGEQGDNANTIWH 258
Query: 317 ---LTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVLDA 439
+T++ F FS+ES+G D+F A D + A+ +L A
Sbjct: 259 PALVTQQPNAFYFSIESNGSISAYDIFLMACDEISARADEILAA 302
[231][TOP]
>UniRef100_UPI0000D6145A DNA-directed RNA polymerases I and III subunit RPAC1 (RNA
polymerases I and III subunit AC1) (DNA-directed RNA
polymerase I subunit C) (DNA- directed RNA polymerases I
and III 40 kDa polypeptide) (RPA40) (RPA39) (RPC40)
(AC40). n=1 Tax=Homo sapiens RepID=UPI0000D6145A
Length = 210
Score = 60.8 bits (146), Expect = 4e-08
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +2
Query: 71 HAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAAC-PANVFDLEDVAGRGGGDGFGVSV 247
H W P+ + PE T+R L+A P DL +G G V
Sbjct: 86 HMTWIPLGNQA-DLFPEGTIR----PVHDDILIAQLRPGQEIDLLMHCVKGIGKKVA-RV 139
Query: 248 ARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQV 427
A PR T RE R +L V L R R+H++FSVES+GV PP L +A+ VL+ KC+
Sbjct: 140 ANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRR 199
Query: 428 VLDAL 442
LD L
Sbjct: 200 FLDEL 204
[232][TOP]
>UniRef100_UPI000059D8D9 UPI000059D8D9 related cluster n=1 Tax=Homo sapiens
RepID=UPI000059D8D9
Length = 169
Score = 60.8 bits (146), Expect = 4e-08
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +2
Query: 71 HAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAAC-PANVFDLEDVAGRGGGDGFGVSV 247
H W P+ + PE T+R L+A P DL +G G V
Sbjct: 45 HMTWIPLGNQA-DLFPEGTIR----PVHDDILIAQLRPGQEIDLLMHCVKGIGKKVA-RV 98
Query: 248 ARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQV 427
A PR T RE R +L V L R R+H++FSVES+GV PP L +A+ VL+ KC+
Sbjct: 99 ANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRR 158
Query: 428 VLDAL 442
LD L
Sbjct: 159 FLDEL 163
[233][TOP]
>UniRef100_Q5JTD9 Polymerase (RNA) I polypeptide C, 30kDa (Fragment) n=1 Tax=Homo
sapiens RepID=Q5JTD9_HUMAN
Length = 168
Score = 60.8 bits (146), Expect = 4e-08
Identities = 46/125 (36%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Frame = +2
Query: 71 HAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAAC-PANVFDLEDVAGRGGGDGFGVSV 247
H W P+ + PE T+R L+A P DL +G G V
Sbjct: 44 HMTWIPLGNQA-DLFPEGTIR----PVHDDILIAQLRPGQEIDLLMHCVKGIGKKVA-RV 97
Query: 248 ARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQV 427
A PR T RE R +L V L R R+H++FSVES+GV PP L +A+ VL+ KC+
Sbjct: 98 ANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRR 157
Query: 428 VLDAL 442
LD L
Sbjct: 158 FLDEL 162
[234][TOP]
>UniRef100_B9AE53 Putative uncharacterized protein n=1 Tax=Methanobrevibacter smithii
DSM 2375 RepID=B9AE53_METSM
Length = 274
Score = 60.8 bits (146), Expect = 4e-08
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL+ G++++IEA A G G+ HAKW P Y+ PE+T + ACP
Sbjct: 124 LVKLKEGEKLNIEAVAKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGI--DYECADACP 181
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP--------ELAGAVDLTRRREH 337
V + + + + C MC+ C+R + +++
Sbjct: 182 RGVLKSDKRSKE-------IKILDIENCAMCKSCVRASIRNAQSEGKDESYINVGYHEND 234
Query: 338 FVFSVESSGVRPPVDLFRDALDVLVAK 418
F+F +E+ G PP ++ A D L K
Sbjct: 235 FIFRIETDGSMPPKEVLLQACDELGEK 261
[235][TOP]
>UniRef100_A5UN55 DNA-directed RNA polymerase subunit D n=1 Tax=Methanobrevibacter
smithii ATCC 35061 RepID=RPOD_METS3
Length = 274
Score = 60.8 bits (146), Expect = 4e-08
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 8/147 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L KL+ G++++IEA A G G+ HAKW P Y+ PE+T + ACP
Sbjct: 124 LVKLKEGEKLNIEAVAKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGI--DYECADACP 181
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP--------ELAGAVDLTRRREH 337
V + + + + C MC+ C+R + +++
Sbjct: 182 RGVLKSDKRSKE-------IKILDIEDCAMCKSCVRASIRNAQSEGKDESYINVGYHEND 234
Query: 338 FVFSVESSGVRPPVDLFRDALDVLVAK 418
F+F +E+ G PP ++ A D L K
Sbjct: 235 FIFRIETDGSMPPKEVLLQACDELGEK 261
[236][TOP]
>UniRef100_C3MJP7 DNA-directed RNA polymerase subunit D n=3 Tax=Sulfolobus islandicus
RepID=RPOD_SULIL
Length = 265
Score = 60.5 bits (145), Expect = 6e-08
Identities = 42/138 (30%), Positives = 69/138 (50%)
Frame = +2
Query: 11 LRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANV 190
L Q+I +EA G G+ HAK+ PV+ A R P+V + L + E + V CP V
Sbjct: 133 LGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI---LGNCEKAATV--CPEGV 187
Query: 191 FDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVR 370
F+L+D G+ +SV ACT+C EC+R G + ++ + ++ +ES G
Sbjct: 188 FELKD--GK-------LSVKNELACTLCEECLRY--CNGLIRISSIEDKYILELESVGSL 236
Query: 371 PPVDLFRDALDVLVAKCQ 424
P + +A ++ K +
Sbjct: 237 KPERILLEAGKSIIRKIE 254
[237][TOP]
>UniRef100_C3N054 DNA-directed RNA polymerase subunit D n=3 Tax=Sulfolobus islandicus
RepID=RPOD_SULIA
Length = 265
Score = 60.5 bits (145), Expect = 6e-08
Identities = 42/138 (30%), Positives = 69/138 (50%)
Frame = +2
Query: 11 LRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANV 190
L Q+I +EA G G+ HAK+ PV+ A R P+V + L + E + V CP V
Sbjct: 133 LGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI---LGNCEKAATV--CPEGV 187
Query: 191 FDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVR 370
F+L+D G+ +SV ACT+C EC+R G + ++ + ++ +ES G
Sbjct: 188 FELKD--GK-------LSVKNELACTLCEECLRY--CNGLIRISSIEDKYILELESVGSL 236
Query: 371 PPVDLFRDALDVLVAKCQ 424
P + +A ++ K +
Sbjct: 237 KPERILLEAGKSIIRKIE 254
[238][TOP]
>UniRef100_Q5TY08 AGAP012796-PA (Fragment) n=1 Tax=Anopheles gambiae str. PEST
RepID=Q5TY08_ANOGA
Length = 234
Score = 60.1 bits (144), Expect = 7e-08
Identities = 25/45 (55%), Positives = 36/45 (80%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRR 136
++K+RPG E DI+ A++GVG+ HAK+SPVAT YR+LP++ L R
Sbjct: 190 ISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNR 234
[239][TOP]
>UniRef100_B8YB56 RNA polymerase subunit 3 n=1 Tax=Sulfolobus shibatae B12
RepID=B8YB56_SULSH
Length = 265
Score = 60.1 bits (144), Expect = 7e-08
Identities = 42/138 (30%), Positives = 68/138 (49%)
Frame = +2
Query: 11 LRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANV 190
L Q+I +EA G G+ HAK+ PV+ A R P+V + L + E V CP V
Sbjct: 133 LGANQKISLEARLRLGYGKEHAKFIPVSLAIVRYYPKVEI---LGNCEKGATV--CPEGV 187
Query: 191 FDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVR 370
F+L+D G+ +SV ACT+C EC+R G + ++ + ++ +ES G
Sbjct: 188 FELKD--GK-------LSVKNELACTLCEECLRY--CNGLIRISSVEDKYILELESVGSL 236
Query: 371 PPVDLFRDALDVLVAKCQ 424
P + +A ++ K +
Sbjct: 237 KPERILLEAGKSIIRKIE 254
[240][TOP]
>UniRef100_Q01F02 Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) n=1
Tax=Ostreococcus tauri RepID=Q01F02_OSTTA
Length = 301
Score = 59.7 bits (143), Expect = 1e-07
Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEV----TLRRPLASAEASTLV 169
+ KLR Q++ ++ A +G G+ HAKWSPVATA ++ P V L + L+ ++ +V
Sbjct: 147 IVKLRNKQQLLLKCIARKGTGKDHAKWSPVATAVFKHDPVVHVNQELLKTLSGSDKRAIV 206
Query: 170 AACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-RLPELA--GAVDLTRRREHF 340
+ P+ +F + D +S+ +CT E + ++ E+ G +D+ + F
Sbjct: 207 ESDPSQMFKYD-------ADLDTISLTSTGSCTFDGEIVKKVNEMGKHGLIDIRPCFDSF 259
Query: 341 VFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
F VES+GV ++ A+ +L K V
Sbjct: 260 TFHVESTGVLDAEEIVLQAVHILQTKLDTV 289
[241][TOP]
>UniRef100_P95989 DNA-directed RNA polymerase subunit D n=2 Tax=Sulfolobus
solfataricus RepID=RPOD_SULSO
Length = 265
Score = 59.7 bits (143), Expect = 1e-07
Identities = 41/138 (29%), Positives = 71/138 (51%)
Frame = +2
Query: 11 LRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANV 190
L Q+I +EA G G+ HAK+ PV+ + R P+V + LA+ E + V CP V
Sbjct: 133 LGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYPKVEI---LANCEKA--VNVCPEGV 187
Query: 191 FDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVR 370
F+L+D G+ +SV +CT+C EC+R G++ ++ + ++ +ES G
Sbjct: 188 FELKD--GK-------LSVKNELSCTLCEECLRY--CNGSIRISFVEDKYILEIESVGSL 236
Query: 371 PPVDLFRDALDVLVAKCQ 424
P + +A ++ K +
Sbjct: 237 KPERILLEAGKSIIRKIE 254
[242][TOP]
>UniRef100_A4RSP9 DNA-directed RNA polymerase II subunit 3 n=1 Tax=Ostreococcus
lucimarinus CCE9901 RepID=A4RSP9_OSTLU
Length = 318
Score = 59.3 bits (142), Expect = 1e-07
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL----------------- 130
+AKLR Q++ ++ A +G G+ HAKWSPVATA ++ P + +
Sbjct: 147 IAKLRKNQQLSLKCIARKGTGKDHAKWSPVATAVFKYTPLIDINHGLLNSLNGKSQTRIL 206
Query: 131 ----RRPLASAEASTLVAACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECI-RLP 295
+R A E + +V + P+ +F + D ++ P +CT E + ++
Sbjct: 207 YHNFKRHNAGPEKAAIVESDPSKMFKYD-------ADTDTFTLTSPESCTYDGEVMKKVN 259
Query: 296 ELA--GAVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQVV 430
EL G +D+ + F F VES+GV ++ A+ +L +K +
Sbjct: 260 ELGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVLQAVHILQSKLDTI 306
[243][TOP]
>UniRef100_A8MR04 Uncharacterized protein At2g15400.2 n=1 Tax=Arabidopsis thaliana
RepID=A8MR04_ARATH
Length = 235
Score = 58.9 bits (141), Expect = 2e-07
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLR----RPLASAEASTLV 169
+AKLR GQE+ ++A A +G+G+ HAKWSP AT Y P++ + L E L+
Sbjct: 154 IAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLI 213
Query: 170 AACPANVFDLEDVAGR 217
+ P VF ++ V G+
Sbjct: 214 ESSPTKVFGIDPVTGQ 229
[244][TOP]
>UniRef100_A3DMQ6 DNA-directed RNA polymerase, subunit D n=1 Tax=Staphylothermus
marinus F1 RepID=A3DMQ6_STAMF
Length = 280
Score = 58.5 bits (140), Expect = 2e-07
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Frame = +2
Query: 11 LRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-RRPLASAEASTLVAACPAN 187
L QEI +EA+A G G+ HAKWSPV+ A ++ + ++ + + + CP N
Sbjct: 137 LGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIADIYIDEKKCLGENCKKCIEVCPRN 196
Query: 188 VFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGV 367
+ E+ V+ + C++CR C A+ + R ++ ++ES+G
Sbjct: 197 ILSFEN-------GKIIVNTNKIFDCSLCRICEEYCP-TDAIRVGWRENEYILTIESTGS 248
Query: 368 RPPVDLFRDALDVLVAKCQVVLDAL 442
PP + +A+ +L K ++ L
Sbjct: 249 LPPKRILIEAVKILENKIDDFIENL 273
[245][TOP]
>UniRef100_C6LU00 DNA-directed RNA polymerase RPB3 n=1 Tax=Giardia intestinalis ATCC
50581 RepID=C6LU00_GIALA
Length = 326
Score = 57.8 bits (138), Expect = 4e-07
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTL-----RRPLASAE--AS 160
+ KL PG+ I+ +A + G++HAKW P A R L ++ L + P + S
Sbjct: 148 ILKLAPGESINALLYARKDRGKIHAKWCPAACVVLRPLAKIILCDEFEKLPQQHNDIARS 207
Query: 161 TLVAACPANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLP-ELAG---------- 307
+ CP VF +E+ V V P C C +C +P L G
Sbjct: 208 YISDTCPRKVFTIENRR---------VVVKDPNNCIFCNDCFNIPISLDGQNTDANTIWH 258
Query: 308 AVDLTRRREHFVFSVESSGVRPPVDLFRDALDVLVAKCQVVL 433
+T++ + F FS+ES+G D+F A D + ++ VL
Sbjct: 259 PALVTQQPDAFYFSIESNGSLSAYDIFLMACDEISSRADEVL 300
[246][TOP]
>UniRef100_Q387X6 DNA-directed RNA polymerase, alpha subunit, putative n=1
Tax=Trypanosoma brucei RepID=Q387X6_9TRYP
Length = 337
Score = 57.0 bits (136), Expect = 6e-07
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L +L PGQ + + A AI+G+G VHAKW+PVA FY M ++ A AE S A+
Sbjct: 183 LTRLGPGQRLKLRAIAIKGIGAVHAKWTPVAACFYEM------KQAKAGAEDSDGRASGR 236
Query: 182 ANVFDLEDVAGRGGGDG--FGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
+GRG D + RPR+ + E V R F+VE
Sbjct: 237 G-----RSRSGRGRVDANEEESNATRPRSASGNHSHEPHRETVNEVIAKRDTSSVRFTVE 291
Query: 356 SSGVRPPVDLFRDAL 400
S G VD+FR AL
Sbjct: 292 SIGQLYAVDVFRQAL 306
[247][TOP]
>UniRef100_Q2HQ76 RNA polymerase I subunit RPC40 n=1 Tax=Trypanosoma brucei brucei
RepID=Q2HQ76_TRYBB
Length = 337
Score = 57.0 bits (136), Expect = 6e-07
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L +L PGQ + + A AI+G+G VHAKW+PVA FY M ++ A AE S A+
Sbjct: 183 LTRLGPGQRLKLRAIAIKGIGAVHAKWTPVAACFYEM------KQAKAGAEDSDGRASGR 236
Query: 182 ANVFDLEDVAGRGGGDG--FGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
+GRG D + RPR+ + E V R F+VE
Sbjct: 237 G-----RSRSGRGRVDANEEESNATRPRSASGNHSHEPHRETVNEVIAKRDTSSVRFTVE 291
Query: 356 SSGVRPPVDLFRDAL 400
S G VD+FR AL
Sbjct: 292 SIGQLYAVDVFRQAL 306
[248][TOP]
>UniRef100_D0A0L6 DNA-directed RNA polymerase, alpha subunit, putative n=1
Tax=Trypanosoma brucei gambiense DAL972
RepID=D0A0L6_TRYBG
Length = 337
Score = 57.0 bits (136), Expect = 6e-07
Identities = 47/135 (34%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
L +L PGQ + + A AI+G+G VHAKW+PVA FY M ++ A AE S A+
Sbjct: 183 LTRLGPGQRLKLRAIAIKGIGAVHAKWTPVAACFYEM------KQAKAGAEDSDGRASGR 236
Query: 182 ANVFDLEDVAGRGGGDG--FGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVE 355
+GRG D + RPR+ + E V R F+VE
Sbjct: 237 G-----RSRSGRGRVDANEEESNATRPRSASGNHSHEPHRETVNEVIAKRDTSSVRFTVE 291
Query: 356 SSGVRPPVDLFRDAL 400
S G VD+FR AL
Sbjct: 292 SIGQLYAVDVFRQAL 306
[249][TOP]
>UniRef100_P39471 DNA-directed RNA polymerase subunit D n=1 Tax=Sulfolobus
acidocaldarius RepID=RPOD_SULAC
Length = 264
Score = 56.6 bits (135), Expect = 8e-07
Identities = 39/132 (29%), Positives = 63/132 (47%)
Frame = +2
Query: 23 QEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACPANVFDLE 202
Q+I +EA G G+ H K+SPV+ + R P+VT+ L + E + V CP VF +E
Sbjct: 137 QKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTV---LGNCEKA--VEVCPEGVFAME 191
Query: 203 DVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESSGVRPPVD 382
+ + V +C +C EC++ AG+V + F+ +ES G P
Sbjct: 192 NNK---------LVVKNELSCILCEECLKY--CAGSVSIESVENKFILEIESVGSLKPER 240
Query: 383 LFRDALDVLVAK 418
+ +A L+ K
Sbjct: 241 ILIEASKSLLRK 252
[250][TOP]
>UniRef100_Q0W1V3 DNA-directed RNA polymerase, subunit D n=1 Tax=uncultured
methanogenic archaeon RC-I RepID=Q0W1V3_UNCMA
Length = 262
Score = 56.2 bits (134), Expect = 1e-06
Identities = 35/121 (28%), Positives = 62/121 (51%)
Frame = +2
Query: 2 LAKLRPGQEIDIEAHAIRGVGRVHAKWSPVATAFYRMLPEVTLRRPLASAEASTLVAACP 181
+ +L+ GQ++ A G + HAK+ PV A Y+ +P VT+ +A + CP
Sbjct: 125 IIELKQGQKVVASGTARLGFTKEHAKYQPVCAAGYKNVPIVTVSDKCDQCKA--CIDECP 182
Query: 182 ANVFDLEDVAGRGGGDGFGVSVARPRACTMCRECIRLPELAGAVDLTRRREHFVFSVESS 361
VF +E + V C+MC+ C+ + + AGA+D++ ++ F+F+VE+
Sbjct: 183 RGVFKIEKNK---------LVVTDQYKCSMCKLCVDVCD-AGAIDVSADKKAFIFTVETD 232
Query: 362 G 364
G
Sbjct: 233 G 233